LOCUS       DAPOLW010000001        50003 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.001, whole genome shotgun sequence.
ACCESSION   DAPOLW010000001 DAPOLW010000000
VERSION     DAPOLW010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 50003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 50003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..50003
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.001"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            356..1606
                     /gene="purD"
                     /locus_tag="ROE18_000001"
     CDS             356..1606
                     /gene="purD"
                     /locus_tag="ROE18_000001"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HDX3650232.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSESFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHSKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            1603..2055
                     /locus_tag="ROE18_000002"
     CDS             1603..2055
                     /locus_tag="ROE18_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HDX3650233.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIVGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAVRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            2045..4093
                     /locus_tag="ROE18_000003"
     CDS             2045..4093
                     /locus_tag="ROE18_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HDX3650234.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVIIFS
                     DFYFITANKAIYNEKTGDVELFGDVNILRGQNERSHSDYAKINLNSNQADFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKVSAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYIDTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNNPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYVLPGAKSGKITQDYLEEYDKENEHTSLYAVQYFYNNEGQK
                     KLKHRISLDYLNKQNEFYELENLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNT
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYIATPNYNLFGGIWFDTQRAHANMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGVYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            4163..6322
                     /locus_tag="ROE18_000004"
     CDS             4163..6322
                     /locus_tag="ROE18_000004"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HDX3650235.1"
                     /translation="MQYSIEINKNTEIFNIDKVAKQAAGAVLMRQGKSVVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     AYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHEKNSQIELKNEIEYPEILAFIENNFQKQ
                     IKEAINQMAKSERASELNKIAKEISNLEIAKEWSEESVLNTLAKVKRKLIREQILNEG
                     KRADGRSLNEVRPINIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLEDH
                     DGDMDFKVAGSKDGITALQMDIKLGGIDQEILKQALYQAKEGRIHILNIMEEAAKEII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGSKDKDISGFELGQEFQGIVKKIAPFGAFVELKNGVD
                     GLLHSSKSKHLNLSENQSLKVKISEIKNGKISVDLCE"
     gene            6319..6801
                     /locus_tag="ROE18_000005"
     CDS             6319..6801
                     /locus_tag="ROE18_000005"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HDX3650236.1"
                     /translation="MSEFLTHPFEPFFDKDSKILILGSFPSVKSRQDGFYYQHPRNRF
                     WPILETLFDVRLENITEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANDLSPIL
                     SQTKIQAIFTTGQSAYKFFIKFHPRLKAIALPSTSPANLNFSFEQLLQNYEIIKKFTK
                     "
     gene            complement(6840..7502)
                     /locus_tag="ROE18_000006"
     CDS             complement(6840..7502)
                     /locus_tag="ROE18_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HDX3650237.1"
                     /translation="MEMILFVLVMILLVLLFVVLFRQYKSPKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDAYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     IN"
     gene            complement(7520..8704)
                     /locus_tag="ROE18_000007"
     CDS             complement(7520..8704)
                     /locus_tag="ROE18_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDX3650238.1"
                     /translation="MENFNRTLLVCWFGVFTTSMGLSQIAPILPFYIKELGHVDTSEI
                     AFYSGLAFGITPLFMAVFSPLWAFLGAKYGYKNMLLRASFGMSVLTLWLSFAHSALEV
                     VFVRGLTGIISGFTSAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGFVAEF
                     FSISTVFDMVAFLIACSFVTIYFFIHERKIQKEAKKNTQKVKENKTLIIVLFITTFVI
                     QFGTFGVMPILSIYVEQIHQGGNLALWAGIVVAASGISNLFFAPKLGKIADKIGPSKI
                     IFGALIFCGICFYLQAVVSNVYTLIFVRLLIGVGLGGLLPCVNALLKKSVSAKNLSVI
                     FGFNQTCQFLGNFCGAFGGGIMASHFSVEFVFTFVCLIFIINAFIFLAFEKKYIFSNQ
                     GL"
     gene            8758..9213
                     /locus_tag="ROE18_000008"
     CDS             8758..9213
                     /locus_tag="ROE18_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HDX3650239.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFISSAGTSG
                     EHDGEGMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTN
                     TQNKVLKITDFSPSLNYDEVPDPWYSGNFDETYKILSLACKNLLVFLSK"
     gene            9465..10742
                     /locus_tag="ROE18_000009"
     CDS             9465..10742
                     /locus_tag="ROE18_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major outer membrane protein"
                     /protein_id="HDX3650240.1"
                     /translation="MKLVKLSLVAALAAGAFSAANATPLEEAIKDVDVSGVLRYRYDT
                     GNFDKNFVNNSNLNNNKQDHKYRAQVNFGAAIADNFKAFIQFDYNAVDGGTGVDNVTN
                     AEKGLFVRQLYLTYTNEDVATSVIAGKQQLNLIWTDNAIDGLVGTGVKVVNNSIDGLT
                     LAAFAVDSFMAAEQGADLLGHSNTSTATPNQAPFKVDSVGNLYGAAAVGSYDLAGGQF
                     NPQLWLAYWDQVAFFYAVDAAYSTTIFDGINWTLEGAYLGNSLDSELDDTTHANGNLF
                     ALKGSIEVNGWDASLGGLYYGDKEKASTVVIEDQGNLGSLLAGEEIFYTTGSRLNGDT
                     GRNIFGYVTGGYTFNETVRVGADFVYGGTKTEAANHLGGGKKLEAVARVDYKYSPKLN
                     FSAFYSYVNLDQGVNTNESADHSTVRLQALYKF"
     gene            complement(10857..11978)
                     /gene="dnaJ"
                     /locus_tag="ROE18_000010"
     CDS             complement(10857..11978)
                     /gene="dnaJ"
                     /locus_tag="ROE18_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HDX3650241.1"
                     /translation="MEISYYEILEITQNADKETIKKAYRKMALKYHPDRNQGDKEAED
                     KFKLVNEAYEVLSNDEKRAIYDRYGKDALKGGGFGSSSSGFGGFEDLGDIFSSFFGEG
                     FGSSRRRKSSNDEKIPSDFIVNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDGK
                     LQTCPKCQGRGQVGVSQGFITFAQTCPDCQGIGEKASEKCSDCKGLGYNESKDSVELN
                     IPEGVDTGMKLRVNAKGNILKNGTRGDMYVKIIAAEDDTFIRDDDDIYIEFPVFFTQA
                     ILGESIKVPTIRGEATLNLPKGAKDGQRFVLEKEGVKDVHSSRMGNQIVQISIKFPTS
                     LNDEQKELLEKLSESFGIKDGMHQEQKGLFEKITNWFKS"
     gene            12135..12806
                     /locus_tag="ROE18_000011"
     CDS             12135..12806
                     /locus_tag="ROE18_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDX3650242.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            12803..14038
                     /locus_tag="ROE18_000012"
     CDS             12803..14038
                     /locus_tag="ROE18_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDX3650243.1"
                     /translation="MTKNYSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAIQNPNLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLKSLEP
                     LKKLRRQVAEVANGEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     STILEEAKEHLMIDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNALKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFFGDKEK"
     gene            14038..14610
                     /gene="recR"
                     /locus_tag="ROE18_000013"
     CDS             14038..14610
                     /gene="recR"
                     /locus_tag="ROE18_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HDX3650244.1"
                     /translation="MVKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCEQCGALSENELCEICSDKERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDATIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(14607..15143)
                     /locus_tag="ROE18_000014"
     CDS             complement(14607..15143)
                     /locus_tag="ROE18_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HDX3650245.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHSEFTLDFVDG
                     GTLALQLSYIIARYDRLIVLDCIEAQGASIGDVFFFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLSKEGFAYE
                     KIADFSLQELADISYKNY"
     gene            complement(15140..15832)
                     /gene="cybH"
                     /locus_tag="ROE18_000015"
     CDS             complement(15140..15832)
                     /gene="cybH"
                     /locus_tag="ROE18_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HDX3650246.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVILGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKFVKEEQH"
     gene            complement(15843..17558)
                     /locus_tag="ROE18_000016"
     CDS             complement(15843..17558)
                     /locus_tag="ROE18_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HDX3650247.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALSADVKKASDEAFKYTSNPYATGVDKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLSPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANVV
                     VNYAKGNQNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGVGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDTKGNNLSEYK
                     VNVNL"
     gene            complement(17561..18700)
                     /locus_tag="ROE18_000017"
     CDS             complement(17561..18700)
                     /locus_tag="ROE18_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HDX3650248.1"
                     /translation="MIDYHQIESRLSALEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLESAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKMASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(18821..20662)
                     /gene="mnmC"
                     /locus_tag="ROE18_000018"
     CDS             complement(18821..20662)
                     /gene="mnmC"
                     /locus_tag="ROE18_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HDX3650249.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNFKDGLNESKFVYTHSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRFLETTPSKRPKKLFYISVEAFYIEKEQLREIYQKL
                     EFYEEFKELLEQFLKFYPKAKEGIYRFYFEDCFLDLVFEDIAVLKELDFKADVWYLDG
                     FSPNKNSQMFDENLIFEVARLSKKNTQICTFSSASFLQKNLKKYGFRVEKTKGFRKRE
                     MIKAYLENELEFKDKEAYFSRTFSSLKNKKVAIIGAGISSAVLAYELSLRGFEIDIFE
                     KHLELGKGASGNESGILSSLILKPKVNLGEFSELSFIEASRFYRQILDLEFKGVVEFA
                     HNDLMQERFDTQRENVLFKISKNQAFLEEGGVIFPKKLVKNLFEKSKACIYFNHEFQA
                     YKFENGCFSLKFKNDVVKSDYAVLIYAMGADAKDFVFYDEMKLSKVRGQVTHLKPFLD
                     TPFPLSSKAYICPVKDDLQVIGASYDRLNASLESKEEDDKQNIENIADFMDKNTKLEI
                     IGSKVGFRSYSSDRFMIVGNAYDEAFYKEEYKALLWTKNKEQKPAKMSCNLYFNFAHG
                     SRGFSTSVLAARYLCALINNEPLCLEKKYIHAIHPARFLIRKLKKGL"
     gene            complement(20659..22638)
                     /locus_tag="ROE18_000019"
     CDS             complement(20659..22638)
                     /locus_tag="ROE18_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDX3650250.1"
                     /translation="MAKIFVFLVFVFTTLFGVYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVINEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISETSINALRKA
                     VIKDIKVQNISQDTEKSTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKSSIVSK
                     AKSDDKIYVLKSSKTNQGVEFELNADLDKDQLKSFALDEKGNYRFISDFDGVLEGGKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKIIFSKETTSQKKTEQVSKI
                     SEKKQDQKTEIKTKVLETKKQDKKTNNEKENQEPLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNVITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNNNLTLGFYIQTTNQNANKKATQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(22638..23729)
                     /locus_tag="ROE18_000020"
     CDS             complement(22638..23729)
                     /locus_tag="ROE18_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HDX3650251.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRMGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLDKLISVKELMEKLVNGE"
     gene            complement(23726..24931)
                     /locus_tag="ROE18_000021"
     CDS             complement(23726..24931)
                     /locus_tag="ROE18_000021"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HDX3650252.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIENLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYKTQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQGNLHPKKAKENLALEITERFHSKEEANNAKSEFDRIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMYLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(24943..27138)
                     /locus_tag="ROE18_000022"
     CDS             complement(24943..27138)
                     /locus_tag="ROE18_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HDX3650253.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKALLFEICGHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPILVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPCLDWLTDISMQSINN
                     LENAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLVRRIRQVATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITMEIPDNINPDSVKDRLKSRCKILDFTSLNDAYKES"
     gene            complement(27122..27346)
                     /locus_tag="ROE18_000023"
     CDS             complement(27122..27346)
                     /locus_tag="ROE18_000023"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HDX3650254.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKLADIALYEIAENKITLEGLVETNR"
     gene            complement(27357..28076)
                     /locus_tag="ROE18_000024"
     CDS             complement(27357..28076)
                     /locus_tag="ROE18_000024"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HDX3650255.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSTVKNN"
     gene            complement(28128..29321)
                     /locus_tag="ROE18_000025"
     CDS             complement(28128..29321)
                     /locus_tag="ROE18_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDX3650256.1"
                     /translation="MRKNILIFFCFFLFVDISLANAINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLTSQNEDLLKSKSN
                     MEGKLISLMAKDFAYDLPIPQGYIESEESFMAFEILGSLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQIKKINESLKDYNAQLAKLQSLKQKQISEINKQKTDRAIYAKKLDDLQAQ
                     QEELRKTLNQLKIINDKEDANSNKNDTKIVKNNQKIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(29318..30124)
                     /locus_tag="ROE18_000026"
     CDS             complement(29318..30124)
                     /locus_tag="ROE18_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDX3650257.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILITNATLKHYEELVNKDYNI
                     IVVSKTELDQNVVKTKVPFFAGLESLDPKDLIDRLKNDVSEKNLKVLKDSLPKFYTLK
                     LNSLPDQNELNSIKNQLLNIVGVSKVETFSKTHDKIYSLLILMKFVFWLFLFIIILLA
                     FVLFLKQMRIWLYEHTDRIEIMCLFGAPFWFRSFMLYKVVVVDCFIAFVILLAFFTQI
                     FDLSIIQESLKAVDIIFPPINFILHLTLIFLATLFICLLCVNTVMFKVKR"
     gene            complement(30111..30776)
                     /locus_tag="ROE18_000027"
     CDS             complement(30111..30776)
                     /locus_tag="ROE18_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDX3650258.1"
                     /translation="MPNLIQANKLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKST
                     LLKSFYGDLEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVM
                     LPLMIKGYSKKVCHDQATKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMN
                     EIF"
     gene            complement(30846..32024)
                     /gene="trmB"
                     /locus_tag="ROE18_000028"
     CDS             complement(30846..32024)
                     /gene="trmB"
                     /locus_tag="ROE18_000028"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HDX3650259.1"
                     /translation="MPNFKSKKIKEINLPYSKDDVEFLWLAKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEGFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSRLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKAQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLVQNGRFELRTDSFEYFNFTLEQFLTFPAPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECKNYELNEFNLSSVEFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFAFKEPFKIQENIKAINELKEILKVQFKI
                     "
     gene            complement(32024..33259)
                     /locus_tag="ROE18_000029"
     CDS             complement(32024..33259)
                     /locus_tag="ROE18_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HDX3650260.1"
                     /translation="MMKRFRLSFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKV
                     ESLKSLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDGKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     GSSQVVSSTSKALPPQVEHLSASTDGSSKIILTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDTRAVEYEVRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDSAGLRSEPSSKVKAAQ"
     gene            complement(33204..34172)
                     /locus_tag="ROE18_000030"
     CDS             complement(33204..34172)
                     /locus_tag="ROE18_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDX3650261.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIISIASLKLCNEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGAILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINVVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRYILGDSLYGYKGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFEQINLGENDEKISLEFLLEFFNSFA"
     gene            34250..35350
                     /locus_tag="ROE18_000031"
     CDS             34250..35350
                     /locus_tag="ROE18_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HDX3650262.1"
                     /translation="MFRLDRRILTHFDYIQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGVHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
     gene            35404..35480
                     /locus_tag="ROE18_000032"
     tRNA            35404..35480
                     /locus_tag="ROE18_000032"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:35438..35440,aa:Ile,seq:cat)
     gene            complement(35589..35664)
                     /locus_tag="ROE18_000033"
     tRNA            complement(35589..35664)
                     /locus_tag="ROE18_000033"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(35629..35631),aa:Phe,seq:gaa)
     gene            35804..37147
                     /locus_tag="ROE18_000034"
     CDS             35804..37147
                     /locus_tag="ROE18_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HDX3650263.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVVKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLTMRFALEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGFIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKMVVVASIFLIFSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FNTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGTLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            37158..37808
                     /locus_tag="ROE18_000035"
     CDS             37158..37808
                     /locus_tag="ROE18_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HDX3650264.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(37805..38476)
                     /locus_tag="ROE18_000036"
     CDS             complement(37805..38476)
                     /locus_tag="ROE18_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthetic enzyme MqnA/MqnD family
                     protein"
                     /protein_id="HDX3650265.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGYKASMEYKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTSNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSKYIDLCAKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQNYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(38482..39108)
                     /gene="upp"
                     /locus_tag="ROE18_000037"
     CDS             complement(38482..39108)
                     /gene="upp"
                     /locus_tag="ROE18_000037"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HDX3650266.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEV
                     SKDFSLKEIEISTPIQKTIVKKLDEKIMICPILRAALGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIDACNFLKSQGVKKIKFISIL
                     AAPQGLKKFSQMHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(39105..40340)
                     /locus_tag="ROE18_000038"
     CDS             complement(39105..40340)
                     /locus_tag="ROE18_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDX3650267.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSHDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEIDVHSVEEIVNFCKALAPTVGGINLEDIAAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFAVDSKEKTLKEVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDTIVGTGRSDYPNQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFNEKAYFESLK"
     gene            complement(40342..41733)
                     /locus_tag="ROE18_000039"
     CDS             complement(40342..41733)
                     /locus_tag="ROE18_000039"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDX3650268.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDEGKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGRYREFTGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVRFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNAKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VCEKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFINKNNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLEVDEC
                     KKRIENFLKVRGK"
     gene            41798..42613
                     /gene="salC"
                     /locus_tag="ROE18_000040"
     CDS             41798..42613
                     /gene="salC"
                     /locus_tag="ROE18_000040"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HDX3650269.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKAL
                     KIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSK
                     NQSYEQFRANFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANI
                     YLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGGFSPILNGKNGY
                     ELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR"
     gene            complement(42650..43981)
                     /locus_tag="ROE18_000041"
     CDS             complement(42650..43981)
                     /locus_tag="ROE18_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HDX3650270.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIITAAEIAEADAIFPGYGFLSENQNFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSEIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPPYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(43983..44438)
                     /gene="accB"
                     /locus_tag="ROE18_000042"
     CDS             complement(43983..44438)
                     /gene="accB"
                     /locus_tag="ROE18_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HDX3650271.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSVKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
     gene            44587..45147
                     /locus_tag="ROE18_000043"
     CDS             44587..45147
                     /locus_tag="ROE18_000043"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HDX3650272.1"
                     /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDNVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            45198..46202
                     /gene="pseB"
                     /locus_tag="ROE18_000044"
     CDS             45198..46202
                     /gene="pseB"
                     /locus_tag="ROE18_000044"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HDX3650273.1"
                     /translation="MFNKKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNAPCMRYFIGDVRDKERLSAAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPVNLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLISEGAKELPITDTRMTRFWISLEDGVKFVLSNFERM
                     HGGEIFIPKIPSMKITDLAHALAPHLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKLVDKDNDFSINALGEKGQKVKDGFSYSSDNNPLWASEKELLEIINHTEGF
                     "
     gene            46204..47334
                     /gene="pseC"
                     /locus_tag="ROE18_000045"
     CDS             46204..47334
                     /gene="pseC"
                     /locus_tag="ROE18_000045"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HDX3650274.1"
                     /translation="MLTYSHQNIDQSDIDALTKALKDEILTGGKKVNEFEEALCEYMG
                     VKHACVLNSATSALHLAYTALGVQEKIVLTTPLTFAATANAALMAGAKVEFIDIKNDG
                     NIDEKKLEARLLKESENIGAISVVDFAGNSVEMDEISNLTKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNEELIDKIKLLRSHGIVKKRLWDS
                     DMVELGYNYRLSDVACALGINQLKKLDHNLEKREEIANFYDKEFEKNPYFSTIKIKDY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGIGVQVHYKPTYEFSFYKKLLGEIKLQN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCG"
     gene            47327..48634
                     /locus_tag="ROE18_000046"
     CDS             47327..48634
                     /locus_tag="ROE18_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
                     /protein_id="HDX3650275.1"
                     /translation="MDKLDFRSQDFSQTGKAMYELACELFPIPRSITGQGFRDSLEIL
                     NKTLGGGILKFHSIKSGTKVFDWIVPDEWNVKEAYIITPKGEKICDFKKHNLHLLNYS
                     EAIDQEIELEELQDHLYSIEEMPDAIPYVTSYYKRRWGFCLTHNERKKLKKGKYKVYI
                     DAKHDENGVLDYADFILPSTQNSKDEILISTYLCHPSMANNELSGPVVSIFLAKWLLG
                     LKERRYNYRFVIIPETIGSIVYLSKHLECLKKHVKAGFVLSCLGDDHTYSLIHTVKEN
                     TLSDKVALHTLKNKENFKAFSFLDRGSDERQYNAPLVNLGIVGVCRTRYGDYDGYHNS
                     KDDLNFISEKGLMGGLQSMQEMILNLEINAVYENTIVCEPNLGKRGLYHTLSTTNDIP
                     LACNFLAYCDGENDIIDIANILNMQAYEFKELLEKIKFYGLVK"
     gene            48631..49422
                     /locus_tag="ROE18_000047"
     CDS             48631..49422
                     /locus_tag="ROE18_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside N(3)-acetyltransferase"
                     /protein_id="HDX3650276.1"
                     /translation="MKYFLEHNGKKYSDKDLIDAFYQLGIKRGDILCVHTELMKFGKA
                     LLTKNDFLKTLLECFFKVLGKEGTLLMPTFTYSFCKNEVYDKVHSKGKVGVLNEFFRT
                     SGGGVRRTSDPIFSFAVKGAKADIFLKENSSCFGKDSVYEILTREGGKFMLLGLNYGH
                     ALTHYAEERNTSFCRYFKEFKGFVIDELGQKREKRINYYVRDLEKAYVCSLDKINEIV
                     RQTRYYKSIKFAGDFLESYDAKEYVKAIGNALKQDKFAIYEKLLL"
     gene            49443..>50003
                     /gene="legH"
                     /locus_tag="ROE18_000048"
     CDS             49443..>50003
                     /gene="legH"
                     /locus_tag="ROE18_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase LegH"
                     /protein_id="HDX3650277.1"
                     /translation="MKYLLEFENKKYSTYDFIETFYKLGLQKGDTLCVHTELFNFGFP
                     LLSRNEFLQTILDCFFEVIGKEGTLIMPTFTYSFCKNEVYDKINSKTKMGALNEYFRK
                     QTGVKRTNDPIFSFAIKGAKEELFLKDTTSCFGENCVYEVLTKENGKYMTFGGQGHTL
                     THYAEEQFNVFYRYHKIFSGILIDENN"
BASE COUNT        16960 a         8874 c         7196 g        16973 t
ORIGIN      
        1 acacctttga tatagtctat attgatgaaa aacatgtttg ggaaaatgtt gccgatatta
       61 ttttacaagg aaagcatttt gacaaatcag gaaaaaccaa atttaaactg atttaagaca
      121 tagaaattta agctaaatta agttataatt tccttgccta aacagtttgt agtatttaaa
      181 gtgatccaac acatttttat taactgcgat tgtgtgattt accgtgttct gtggcatcgt
      241 ttgagctttg aaaaaagtga gaagttgcag cctttaaaaa ttacctagcg gttttctttg
      301 actttttggg gtcaatcttt gttaaacggc tgtttgggtt taaaaggaga tataaatgaa
      361 aataatgatt ttgggtagtg gtgcaagaga atattctatt gctttagcct taagaagagt
      421 agacaaaaat ttagagtttt attttgctcc tggaaatggc gctaccgaaa gtcttggaac
      481 aaatttaaac ctaaaagatc cagtagtttt agcaacctat gcaaaagaaa aaggttttga
      541 tctttgtata gtaggaagtg aaagtttttt agctgaaggg gttgtagata tttttaaaca
      601 acaaggactt gctatttttg ggccaagtaa agctgctgca atgcttgaaa cctcaaaatc
      661 ttttatgaaa agctttctta aaaaataccg tatcaaaaca gccaaatttt taaacacaaa
      721 tgacattgaa aaagcaaaaa attttatata tagtttaacc cctcctatag tagtaaaagc
      781 cgatggactt tgcgcaggaa aaggtgttat catagctaaa actcatgaag aagccataga
      841 agaaacagct aaaatgctga gcggagaaag ctttggagat gctggaaaac tcgttgtaat
      901 tgaagaattt ttagatggtt atgaattaag catttttgca gtatgtgatg gcaatgattt
      961 tgttttactt cctgcagcac aagatcacaa aaaattactc gataatgatc aagggccaaa
     1021 tactggtgga atgggtgctt acgctcctag ctctttggcg aatgaaagct tgcttagaaa
     1081 agttcaaaaa gatattattt taccaacttt agcaggtatg aaaaaagaag gagcggaatt
     1141 ttgtggtgtt ttatttatag gtgctatgat cgttggaaat aaaccttacg tattagaatt
     1201 taacgttcgc tttggcgatc ctgaatgtga agttttaatg cctttaatcg aagatccttt
     1261 agagcttatt ttagctgcta ctcaaagacg cttaagacac tcaaaaatca aaatcaaaaa
     1321 agaatttgca gtaggggttg tatgcgcgag tgaaaactat ccttacaaaa gttcaccaaa
     1381 aagtgaaatt accgtaaata acattcctga aaactctcat atttcttatg ctggagtaag
     1441 cctagaagat ggcaaattaa tggctgatgg tggaagagtt ttagtttgcg ttggcacagg
     1501 aaaaagtata gaagaagcgc aaaaaaatgc ttataaactt tgtgataatg taaatttcaa
     1561 aggaaaacaa tacagaaaag acatcgctca tcaggttctg aaatgaaaga aaatttacaa
     1621 gaccgcttag agcgtgaaaa tctaaaaata gcaagttttg gaaaaagagt tctagctttt
     1681 ttaatcgatg atatggttat ttctttgatt gtgtttatca ttttttatga tcgtctaatc
     1741 caagcaaaag atttatttga aacaactcaa attgtaggaa atttttacct tggcttcatc
     1801 ttgcttcatt ttagttatca agcaattttt acttatcttt atggggcaag tttgggaaaa
     1861 atattatgca aaattatcat cttggatgaa aatcttcttg ataaacccaa tctcattcaa
     1921 agttgcatca ggtctgccgt aagacaagtt agtgctatgg cgtttatgct tggatttgct
     1981 tgggctttaa gcaatgattt acgcaaagct tgggaggatt atctagcaag gacaatagta
     2041 gtcgatgtgg cgtaaatttt ccctattgct aggaactagc atagctttaa atgcagcaca
     2101 agttgatatt tacgctcttg atgcaaaaaa agaaggtgat attcttactg cgaacaatga
     2161 tgttattatt ttttctgatt tttatttcat cactgccaat aaagcaattt acaatgaaaa
     2221 aaccggagat gttgagcttt ttggcgatgt taatatccta aggggacaaa acgaaagatc
     2281 acattctgat tatgctaaaa tcaacctaaa ttccaatcaa gccgatttta gtaatttttt
     2341 cttttccaat aacaatcttg aagtatggtt tcaaagcaaa acaagccatc taaatgataa
     2401 agtctttgaa agcaaagttt cagcagtttc aagctgcaat gttgaagatc ctgattggga
     2461 aattcgtttt tcaaaaggct ggcttaaccg ggaaaccaat tttgttcatc tttacaatgc
     2521 aagattatat gttaaaaata ccccagtttt ttatctacct tattttggat ttagcgctga
     2581 tactcataga caaagcgggc ttttaatccc aaaaatcgtt ttaaaaagta gcgaaggctt
     2641 atactatgaa caacctattt atatagccac tcaagaaaat tgggatttag aacttgatcc
     2701 acaaattcga acaaaccgtg gttttggact ttattctact ttaagatttc ttgattctcc
     2761 atattcaaca ggagaattaa attttggtgc ttttagggaa aatagctcct attttcacga
     2821 tgaaaatttg aaaaatcaaa cccactatgg aatagaacta aaatactcaa gagatgattt
     2881 aatcaaatct ttactcagtg ataattttca agaaggtcta tggatagatg caacctatct
     2941 caacgatgtg gattatttaa atttaggaag tagggattat cgagatctta actcgcttgt
     3001 aacctccaaa atcaattatt ttttagctga tgaaaacaat ttttacggag cttatgcaag
     3061 atattatatc gacacatcta aacttagcaa caatacaacc ttacaagaat atccaagctt
     3121 tcaatatcat agatttttaa ataacctttt tgatgaacgc ttgcgttatt catttgatgc
     3181 ttcatttcat aatttttacc gacctgctgg ttcttatgca aatgagctaa atttagactt
     3241 gcctatctcg tatcacaacg ctttttttgg agacttttta cactttactt ttacagaaag
     3301 attttatgct tcttttgtaa attatagcaa caatcccgaa agaaaccatg agcattattt
     3361 cagaaacact catgatttta atctctacac cgatctttca aaagcttatg aaaatttctt
     3421 tcatacttta aatttagggg tgaattacgt tttgccagga gcaaaatcag gtaaaatcac
     3481 gcaagattat cttgaagaat acgacaaaga aaacgagcat acaagtcttt atgctgtgca
     3541 atatttctat aacaacgaag gacaaaaaaa actcaaacac agaatttcgc ttgactatct
     3601 caataaacaa aatgaattct atgaacttga aaatctttta acttattatt ttaatgaaaa
     3661 catcaatctc aacagcgaag tgctttactc ttatgaacaa agtcgcttta ccaatgtcat
     3721 cagccaaata gaagtcaata caaattcaaa atttaattgg atgttttctc atgcttatca
     3781 aaacgatgag tatggaaaat atagctttat tggtacaaga gcaaattata ttgccacacc
     3841 taattacaat ttatttggtg gaatttggtt tgatactcaa agagctcatg caaacatgtg
     3901 ggaacttggc tatacctacc aaagaaaatg ttggaactat tctttaatgt atagagaaag
     3961 aatcgatcca caacttacaa gtggtggtat cacagctaaa aatcaaagcg gagtttattt
     4021 tattttcaac ttctatcctt taggaggagt aaaatacgat ttctctttag cagaaagtga
     4081 aaacaaaatt taaaaaggat gaaatttgct aaatatttta aaaaatttta cgaatttatt
     4141 atctggtaaa aaaggaaaaa taatgcaata cagcatagaa attaacaaaa atacagaaat
     4201 atttaatata gacaaagtcg ccaaacaagc tgccggtgct gttttaatga gacaaggcaa
     4261 aagcgttgtt ctagctacag ttgcaagaga agaaaaacaa gttgaagaag attttttacc
     4321 tctaaccgtc caatacatcg aaaaagctta tgccgcagga aaaatccctg gtggttatgt
     4381 caaaagagaa accaagccaa gcgatgcaga aaccttaaca gcacgcatta ttgatagaag
     4441 cttacgccct ctttttccaa aaggctatgc ttatccgact caaatcgttg tgatggttct
     4501 ctcagctgat cctaaagtag atttgcaagt aatgagctta aatgccgcaa gcgtggcact
     4561 ttatcttagt gatataccta tgaaagctcc agtatgtggt gtgcgtatag gaaagataga
     4621 tggaaatttc atactcaatc caaacaatga agagcttcaa aatagcaccc tagatctcta
     4681 tgtagcaggt gtaaaagatg agcttttgat gatagaaatg agagccttac ctgatcaaaa
     4741 agaaaatgaa atctttatcg aagctcctta tgctgatgtt ttaactcaaa ccacttcaca
     4801 aaatatgaat gaacttagcg aagatgaaat tttagaagct ctaaatttag ctcaaaaagc
     4861 tatattaaat ggttcaaatg cttatgaaga agcctttagc aaacacgaaa aaaattctca
     4921 aatcgaacta aaaaatgaga ttgaatatcc tgaaatttta gcttttatag aaaataattt
     4981 ccaaaaacaa atcaaagaag ccatcaacca aatggcaaaa agcgaaagag caagcgaact
     5041 aaataaaatc gctaaagaaa tttcaaatct tgaaatcgct aaagagtgga gcgaagaaag
     5101 tgtcttaaat accttagcta aagtcaaacg caaacttatt cgtgagcaaa ttttaaatga
     5161 aggcaaaaga gctgatggta gaagtttaaa cgaagtgcgt cctattaata tagaaaccaa
     5221 catcttacca aacgctcatg gttcttgtct tttcactcgt ggacaaactc aagccctagt
     5281 ggttgcaacc ttaggcggag aaaacgatgc tcaaatgata gacttgctta cagaaaaaaa
     5341 tcctataagc gaacgcttta tggtaaatta taattttcca ggtttttcag taggcgaagc
     5401 aagtcctatc aaagctccag gaagaagaga actaggacat ggaaatttag ccaaaagagc
     5461 actttatcca agtgtggatg aaaactatcc ttatgtaatc cgcttagtca gtgaaatttt
     5521 agaaagcaat ggctcaagtt ctatggcaac ggtttgcggc ggatctttag ccttaaaagc
     5581 agcaggagtg ccaagcttaa aacttgttgc aggagtagcc atggggctta tctttgaaga
     5641 taacaagtat gctgttttaa cagatatcat gggacttgaa gatcatgatg gggatatgga
     5701 ctttaaagta gcaggaagca aagacggcat tacggctctt caaatggata taaaactagg
     5761 tggaatcgat caagaaatac taaaacaagc tttataccaa gccaaagaag gaagaattca
     5821 cattctaaat atcatggaag aagccgccaa agaaatcata gtcaatgaag aagttttacc
     5881 taaacttgag ctttttagcg ttgatccttc aaaaatcgtt gatatcatag gacaagccgg
     5941 aaaaaccatc aaagaaatcg tagaaaaatt tggcgtttct atagacttag atcgcgaaaa
     6001 aggtgaagta aaaatagcag gtagtcaaaa cgaacaaatc aaagccgcaa aagactacat
     6061 cataaacatc acaagctctc aaaaaggaac taaaaaaggc tctaaagaca aagatatatc
     6121 aggctttgaa cttgggcaag aatttcaagg tattgttaaa aaaatcgctc cttttggagc
     6181 ctttgtggaa cttaaaaatg gtgttgatgg tttattgcat agttcaaaaa gcaagcatct
     6241 taatttaagc gaaaaccaaa gcttaaaagt taaaatcagc gaaattaaaa acggaaaaat
     6301 ttctgtggat ttgtgtgagt gagtgaattt ctaactcatc cttttgagcc tttttttgac
     6361 aaagattcta aaatcttaat tttaggatct tttccttcgg taaaatcaag acaagatggc
     6421 ttttattatc aacacccaag aaatcgtttt tggcctatac tagaaacact ttttgatgta
     6481 agattagaaa atatcacaga acaacaagcc tttttaagaa aaaaacatat cgctctttgg
     6541 gatgtacttc aaagttgcaa gataaaaaat tcagatgata aaactataag ttatgcaaaa
     6601 gccaatgatt taagcccgat cctttctcaa accaaaatcc aagccatttt tactactgga
     6661 caaagtgctt ataaattttt tattaaattc caccctcgct taaaagccat agccctaccc
     6721 tcaacttctc ctgcaaattt aaatttttct tttgaacagc ttttacaaaa ctatgaaata
     6781 atcaaaaaat ttacaaaata acaaactaag cattaccccc aagtaaaaca agaaaaaagc
     6841 tagttaatat ctagcttttg cgtgttatcc ttgaattcaa attccactct cttagctcca
     6901 aaacctttag caatagcttc taaagtatcc ttagcacttt tatgaatttt gctttctaaa
     6961 ttttggataa gatttaaaga caagtcttta acctcatctt tggcttcttt tatgagtttg
     7021 tttttatcac tttcgctaaa actaatcccc gtactattga tagaatcagg cagtaaaaaa
     7081 ggtaaaaatt tagcattttt ttcatcataa aatttcatat ctatgatgct gtgtttgtat
     7141 ctacactctg gcatgatgat cttataagca tcgtccccta aaggcaaaat atcaaagttt
     7201 ttatccctta aatcatacaa gaaagtgatc tcaaattcaa aaatcaaagc aatctgtctt
     7261 tcactcaaag accatcctaa aagatttttc caaattccat taaaagcgct atctttttta
     7321 gtaacaatct ctttactaaa aacttgaaaa acacttaatt ctcctatgga tttaagctgc
     7381 atgatatcgc taaaactttg cgtgcttttt tcttctattt tagggctttt atactgccta
     7441 aaaagcacta caaacaaaag tacaagtaaa atcatcacta aaacaaataa aatcatttcc
     7501 attttaaacc tttctaaatt tataaacctt gatttgaaaa gatatatttt ttctcaaacg
     7561 ctaagaaaat aaaagcatta atgataaaaa tcaaacacac aaaagtaaaa acaaattcca
     7621 cgctaaaatg tgaagccata atccctccgc caaaagctcc acaaaaattt cccaaaaatt
     7681 gacaagtttg attaaaacca aaaatcacac ttaaattttt agcactcaca ctttttttaa
     7741 gcaaggcatt cacacaaggc aaaagccctc caagtcctac acctataagt aaacgcacga
     7801 aaataagcgt ataaacatta cttactacag cctgcaaata aaagcaaatt ccacaaaata
     7861 tcaaagctcc aaaaataatc ttactaggcc ctatcttatc ggcgattttt ccaagttttg
     7921 gtgcgaaaaa aagattgcta atcccacttg cagccactac tatacccgcc caaagagcca
     7981 aatttccacc ttgatgaatt tgctcaacat agatacttaa aatcggcatc actccaaaag
     8041 taccaaattg tatcacaaaa gtagtgataa aaagaacgat aataagggtt ttgttttctt
     8101 tcactttttg agtatttttc ttcgcctctt tttgaatttt tctctcatgg atgaaaaaat
     8161 aaatcgtcac aaaagaacaa gcgatcaaaa aagccaccat atcaaaaacc gtactaatac
     8221 taaaaaattc agccacaaag ccaccaaaca aaggcccaag caaacttcca cttatagaag
     8281 ccgtagaaag agttcctaaa gcataagcca ctttttcttt aggtgctatc acagcgataa
     8341 acacaacagc agcagaagta aaacctgaaa ttatccctgt taaaccccgc acaaaaacta
     8401 cttctaaagc actatgagca aagctaagcc ataaggttaa aaccgacatc ccaaaacttg
     8461 cacgaagaag catattttta taaccatact ttgcacccaa aaaagcccac aaaggtgaaa
     8521 aaacagccat aaaaagtgga gtgatcccaa aagcaagccc tgagtaaaac gctatttcac
     8581 tcgtatcaac atgtcctagt tctttgatat aaaaaggcaa aatcggagcg atttgactaa
     8641 gccccatact tgtggtaaaa acaccaaacc aacacacaag caaagttcta ttgaaatttt
     8701 ccatggattt attgtatgat attttttata atttttaatt aaaactcaag gataaaaatg
     8761 aaaaaaatac tctttatatg cttaggcaat atatgccgtt cgcctatggc agaatttatc
     8821 atgaaagatc ttgtcaaaaa agcaaattta gaaaaagaat tttttataag cagtgctgga
     8881 acttcaggag aacacgatgg agaaggtatg cactatggca ccaaaaacaa acttgctcaa
     8941 cttaacatag aacacaaaaa cttcacaagc aaaaaactca ctcaaaagct ttgcgatgaa
     9001 agcgattttt taatcaccat ggacaattct aacttcaaaa atgttttaaa aaacttcacc
     9061 aacacccaaa acaaagtttt aaaaatcact gattttagtc ctagtctaaa ctacgatgaa
     9121 gtccctgatc cttggtatag cgggaatttt gatgaaactt ataaaatttt atccctagct
     9181 tgtaaaaatt tacttgtttt tttatcaaaa taatttaaaa caactatata ttacttctcg
     9241 tttacttttt aggcttatac ttctaaacga accgaaaaac attcataaga aaaactcctt
     9301 aaaattacac gcctagctta aatcccttta gctaggcttt tctttagatg tttttatcct
     9361 tcggatttaa aatttttact attttaagcg cttcttaaga aaaaactcca aatttatgtg
     9421 ctacaattac aatgttttat taatttttga caaggagaat tctcatgaaa ctagttaaac
     9481 ttagtttagt tgcagctctt gctgcaggtg ctttttcagc agctaacgct actccacttg
     9541 aagaagcgat caaagatgtt gatgtatcag gtgtattaag atacagatac gatacaggta
     9601 attttgataa aaatttcgtt aacaactcaa atttaaacaa caacaaacaa gatcacaaat
     9661 atagagcaca agttaacttc ggtgctgcta tagctgataa cttcaaagct ttcattcagt
     9721 ttgactacaa cgctgttgat ggtggcactg gtgttgataa cgtaacaaat gccgaaaaag
     9781 gactttttgt tcgtcaatta tacttaactt atacaaatga agatgttgct acaagtgtaa
     9841 tcgctggtaa acaacaatta aaccttatct ggacggataa cgctattgat ggtttagttg
     9901 gaacaggtgt taaagtagta aataatagca tcgatggttt aactctagct gcttttgccg
     9961 tagatagctt catggctgca gagcaaggtg cagatttatt aggacatagt aatacttcaa
    10021 cagcaacacc aaatcaagct ccttttaaag tagattcagt aggaaatctt tacggtgctg
    10081 ctgctgtagg ttcttatgat cttgctggcg gacaattcaa cccacaatta tggttagctt
    10141 actgggatca agtagcattc ttctatgctg tagatgcagc ttatagtaca actatctttg
    10201 atggaatcaa ctggacactt gaaggtgctt acttaggaaa tagccttgat agcgaacttg
    10261 atgatacaac acacgctaat ggcaatttat ttgctttaaa aggtagcatt gaagtaaatg
    10321 gttgggatgc tagccttggt ggtttatact acggtgataa agaaaaagct tctacagttg
    10381 taatcgaaga tcaaggtaat cttggttctt tacttgcagg tgaggaaatt ttctatacta
    10441 ctggttcaag actaaatggt gatactggta gaaatatctt cggttatgta actggtggat
    10501 atactttcaa cgaaacagtt cgcgttggtg ctgacttcgt atatggtgga acaaaaacag
    10561 aagctgctaa tcatttaggt ggtggtaaaa aacttgaagc tgttgcaaga gtagattaca
    10621 aatactctcc aaaacttaac ttctcagcat tctattctta tgtgaaccta gatcaaggtg
    10681 taaacactaa tgaaagtgct gatcatagca ctgtaagact tcaagctctt tacaaattct
    10741 aagaagcttt caagtctaac ttcaaggcgg ggttttgctc cgcctttttt tatgcctgat
    10801 ttttaaaact taaatttata taaaaaattt tcccaagcta aaacgcttta ggaaaattaa
    10861 gacttaaacc aattagtgat tttttcaaaa agcccttttt gctcttgatg cataccatct
    10921 ttgatgccaa aactttcact tagtttttct aaaagttctt tttgttcatc gtttaaagaa
    10981 gttgggaatt tgatagaaat ttgaacgatt tgatttccca tgcgagaact atgaacatct
    11041 tttacccctt ctttttcaag aacaaatctt tgtccatctt tagcaccctt tggtaaattt
    11101 aaggtcgctt caccgcgtat ggtgggtact tttatactct ctcctaagat agcttgagta
    11161 aaaaacactg gaaattctat atatatatca tcatcatctc tgataaaagt atcatcttca
    11221 gcggcgatga tcttaacata catatcccct ctagtaccat tttttaagat attaccttta
    11281 gcattgacac gaagcttcat acctgtatct acaccttctg ggatattaag ctcgacacta
    11341 tctttgcttt cattataacc caaaccttta caatcactac atttttcact agctttttct
    11401 ccaattcctt gacaatcagg gcaagtttgt gcaaaagtga taaaaccttg agaaacccca
    11461 acctgtcctc taccttgaca ctttggacaa gtttgaagct ttccatcttt agcccctgtt
    11521 ccattacaag ttttacaaga gcatttataa gtaaagtcta tatttttctt acaaccaaaa
    11581 accgcttctt taaaacttaa ttttaaatta acgataaaat ctgaagggat tttctcatca
    11641 tttgaacttt ttctacgacg cgatgagcca aagccttctc caaaaaaact agaaaatata
    11701 tctcctaaat cctcaaaacc accaaaacct gagctactag aaccaaatcc accgcctttt
    11761 aaagcatctt ttccgtatct atcataaata gctcgctttt catcattgct taaaacttca
    11821 taggcttcat taacaagctt gaatttatct tctgcttctt tatcaccttg gtttctatca
    11881 ggatgatatt ttaaagccat ttttctatag gcttttttta tggtttcttt atcagcattt
    11941 tgcgtgattt caagaatttc ataataactt atttccacat tattccttta aaaaatttaa
    12001 aattttacta gaattttaat tttaaaaatt caaaaatata attttagcaa aaataaaatc
    12061 aataatttat caaattttaa ataaaattat gtaaagattt taaagactac ataaaaattt
    12121 acaaggacac tagaatgatt aatgtgttga tgatagaaga tgatcctgac tttgcacaat
    12181 tattatctga atatttagcg caatttaata ttaaaatcac aaattttgaa aatcctaaaa
    12241 gtgctttaaa tgtgggtatt caaggctatg attgtctgat tttagattta actttacctg
    12301 gaattgatgg tcttgaagtt tgtagagaaa tccgacaaaa aagcaatatt cctattatca
    12361 tctcatcggc tagaggtgac ttaagcgata aagttgtggg gcttcaaatc ggtgctgatg
    12421 attatctacc aaagccttac gatccaaaag aaatgtatgc aaggattatg agtcttattc
    12481 gtcgcacaaa aagagttgaa cacactaata atgaaaatat taactctgct ttcaaaattg
    12541 atgaaagaag acatgagatc acctatgaag ataaggtttt aacacttact cctgctgaat
    12601 ttgaaatttt agaatacctt atccaacaac acggatatag tgtttcaaga gaacagcttg
    12661 taagtcgctg taaaaatcta aaagataaag attctaaaag ccttgatgtt atcatcggtc
    12721 gcttaagggt aaaaatagga gatagttcaa aatctccaaa acatattttt tctgttagag
    12781 gtataggata taaactgata ggatgacaaa aaattattct attcatacca aactgattat
    12841 tttatttgtt gttacttttt tcttggtttg tgtgcttttt atcgttcttt taaaaataga
    12901 agggaatacc tataatgaag aagaaagttt aaaacaagaa aatcttataa aaaatttact
    12961 catctcctat gaaaacactt caggtgttga aataggagct tatcttggaa acagcggttt
    13021 taacgctata caaaatccca atcttgtaaa agctataaga aataatggac aatcactttt
    13081 taaagcaggc ggagagcttt gtactctttc ttctttaaaa tatcatagca atctttattt
    13141 tgatgttcaa tgtaaagatt ttgatggctt gtatgaagaa aatactagtg atagggttta
    13201 taatctttta ttgataggat ttttctcttt ttctttgttg gttgttttta tgtatttttc
    13261 tgtattaaaa tccttagaac ctttaaaaaa attaagaaga caagttgccg aagttgcaaa
    13321 tggggaacaa cctgattttc tagactatca agaagatgaa gtaggcaaga tcgcctttga
    13381 atttcaaaaa gctttcaaga aaaaccaaga attaattcaa tcaagacaac ttttcctaag
    13441 aacaatcatg catgagttaa aaacccctat aggaaaaggg agaatcattt ctgaaatgat
    13501 caaagaagac agacaaaaag aaagacttat cgctatattt ttacgcatgg attctttgat
    13561 caatgaattt gccaaaatcg aaaatttatt ttcaaaaaac tacaacttac actttaaacc
    13621 tagtcgtttt agcactatac ttgaagaagc taaagaacac cttatgatag atgattttaa
    13681 taaagttgta aaagtcgata taagatatga cgctttaatc aatgttgata tggaaatttt
    13741 ctctgtaatt ttaaaaaatc ttatcgataa tgccttaaaa tactcaaaca atggcacttg
    13801 tgagcttttt tgttgtaaag aatgttttac cattaaaaat ccaggcaaac ctttagcaga
    13861 gcctatagag cattatcttg aagcttttac aagagaaaaa cacaatcaag tcaaaggtat
    13921 gggactagga ctttatatag tttcagaggt atgtaaactg cataattttg atttgattta
    13981 tttttatgat gatggaaagc attgctttaa aattttcttt ggagataaag aaaaataatg
    14041 gtaaaaggcc tggaaaaatt caatgaactt gttgaaagtt ttgcaaattt acctaccata
    14101 ggaaaaaaaa ccgccataag gcttgcttat cacctttgca taaataatca aatcgatggt
    14161 atgaaactcg cacacaatat agaaaatgct atccgcttta taaaaccttg tgagcaatgc
    14221 ggtgctttaa gcgaaaatga gctttgcgaa atttgtagcg ataaagaaag aaataaaaac
    14281 attttatgta tagttgaaag cccaaaagat atactaacac tcgaagagag tcaaagttac
    14341 aatgggctat attttgtttt agatgagtta aatgaagaaa aacttgaaaa actaaagcaa
    14401 atcatactta agctaaatat ctctgagctc atttttgcat tgacacatag cattaattct
    14461 gatgcaacca tcttttttat agaggataaa tttaaaggct taaacctaac ttttagtaaa
    14521 atcgctcaag gaattccaag tggtgtaaat ttagaaaatg tggatttaat ctctttaaat
    14581 aaagctatga attttagaac aaaaatttag taatttttat aagaaatatc ggctaattct
    14641 tgcaaagaaa aatccgcaat cttttcataa gcaaaacctt ccttgcttaa aaaatcaagt
    14701 aaagtttttt ccatgatttt agctccttgt ataagctcat ctgaaagctt aaaactcatc
    14761 gcttcaatac gctttggcac acaagctaag atgtgtgttt taggcaaatc tcctgcaagt
    14821 tccatgtatt gtaaggtttg aagcatttct atttcatggg cacttccact ccagctaatt
    14881 ttattaggca tagcatcata aggaaagaaa aatacatctc ctatactcgc accttgcgct
    14941 tctatacagt ctaaaacgat aagtctatcg tatcgagcga tgatatagct aagctgcaaa
    15001 gccaaagttc caccatcaac aaaatctaaa gtaaattcag aatgagtgaa tttgtagttt
    15061 ttttcaagtt gtttgcaaag atgaacgcct aagccttcat ccgcaaacat gatattacct
    15121 attccaagga ctaagaattt caatgctgtt cttcttttac aaatttatat ccgctaataa
    15181 tagcatccat agcaccatct ttacctttta ctgcgttaaa aatcgccatg taaatatgta
    15241 ctggcacaaa aatcataatt acccacatca aaattctatg ataagttctt acatcggcca
    15301 aaccgcccat tgcagcttca agcggtctta aaatatgata taaaagccca cctaagccct
    15361 catggtaagt atgagtataa agaataagcc ctgtaagaat gatacctaat atcacaagat
    15421 aaaagaaaaa ataagttaca aattgcaaag gattataaac cccttttaaa tgcggatgtt
    15481 ttcctaagaa aatgtaaaat tttacttgtt ctatccataa tttgatatta aaaatatccc
    15541 atacacttct gcgttctttt gcgcttacct tatcgcagaa aaacaaatat actttaaaaa
    15601 taatacaagc gattaaaaca aaacccaccg cttgatgtac taagcggtat tttgcttgca
    15661 taaaatttac gggttcaccg ttactaatag ggctttggaa cacataggaa agataatacc
    15721 ctgtgccaat aagaatcact atagcaatag ctcttaccca gtgcgttaaa cgcaaaccta
    15781 tgctaaattc atattcagct tttctttgca atttttcttc tttgttttgc atgaaagcct
    15841 ccttataaat tgacattcac tttatattca cttagattat tgcccttagt atccattaca
    15901 tgcaccgcac aagcaataca aggatcataa gagtgaattt ttctaatgat ttcaagtggt
    15961 tgttttacat cagcgatttt aagtcctatc aaacattgct cataacttcc acctacgcca
    16021 tttgcgtctt ttggacttgc attccaagta gaaggcacca cagcttgcca attttcaata
    16081 acaccatttt taattctaca ccaatggctt aatgttccgc gtggcacatg ccccatatag
    16141 cgtcctttgt attctttaga attatcgatc acataaggag cacaagtact ctggtctact
    16201 tttaaatttt caactaaatt attaaacgct tttaaagcat tatttgcaac gatttttgct
    16261 tcaatacaac gagcagctgt tcttccaagt gtgctaaata cagcatttaa aggaagtcct
    16321 gtttctttta agaactcatc taccacagga acaacatttt gattaccttt agcataattt
    16381 acaacgacat ttgctaaagg tcctacttgc ataggatttc cttcatagcg tggagcttta
    16441 atccagctat atttaccctt agtatcaaac actttagaat ggacattatt tccatgatga
    16501 tctacgcttt ctccatctac aagtcctgta taatttggat ttgttttgcc atcataagga
    16561 tgtaaaggtt cattgtctgc ataccaagaa tgagttgcct cttcagtaat cttatcttct
    16621 tctacttcat aaaccttgct taaatctcca tttttgataa taccactttc aaaaagccat
    16681 tcatctcttc cgatttggaa ttctttaaag gtataaagat tatttacccc tatatcattt
    16741 aaaacacttg cttcatgtgc ataagctttt cctgccatca caagatcagg ataatacgca
    16801 cgattaacaa agtcttgcac ttcttggaat ttaaccatat attcacccat tcttgcagga
    16861 tcgagtaaat ccataacgca agttacacca ccaacggtta agctttgtgg atgtggattt
    16921 ttagctccaa aaatcgccat acattgagca atgattcttt gaattcttaa acattctaga
    16981 tagtgagaaa gaacgattaa attttgctca ggacttaaac gataagttgg atgaccataa
    17041 tacgcattag caaaaggtcc taaatttcct ttatctacaa aagttttaag tctttgttgc
    17101 acttcaagaa gtttatccac acctgttgca taaggatttg aagtgtattt aaaagcttca
    17161 tcgcttgctt ttttaacatc agcacttaaa gcacttacca catcagccca atcaagccca
    17221 tgaagttgat aaaaatgcac aatatgatcg tgtaaaaata aagccgcatt cattaaagtt
    17281 cttgttaaaa gcgcatttaa aggcggagta atacctaaag cattttcaac agcaactata
    17341 cctgctttat aatgtgaaaa agtacaaact ccgcaaattc tttgcgtcat aaaacccgca
    17401 tctcttggat cacgcccttt tactatggtt tcaataccac gccacaaagt agagcccgca
    17461 taagcttctt ttaccacatt gttatcatca acaacaactt caactcttaa atgcccttca
    17521 attcttgtaa taggatctac gattattttt tgactcattt ttattcctta tctttttgca
    17581 tggaagatat aactgcgtgt gctgctatag caacgcctgt gagtgtaagc acacctatac
    17641 cgattttatc tgaaacacta tccgcaccca aaccaaaaac ggtatcaaat ttacgactag
    17701 ccataggctc ttcaaaaggt cccatagtat cccaaaaatt aggctcagaa caacctatac
    17761 aaccatgccc tgcttgaata ggccaagaag tgtgctggtt aaatctctct cttgagcagt
    17821 tattaaaagt ataaggtcct ttacaaccta ctttataaag acaaaaacct tgttttgctc
    17881 cttcatcccc aaaagcatgt acaaattcac ccgcatcaaa atgtccgcgt ctttcacaaa
    17941 gatcatgaat tcttaaacca taagcccatt ttggtctatt atacacatca agtgctggta
    18001 actcaccaaa taataaataa tgaagtacat tacccactat atttttttca cttggaggac
    18061 agcctggaac attgatcaca gttttgcttg ttactttgct taaaggctgc gcgttgctag
    18121 gatttggtct tgcggcttga attcctccaa agctagaaca ggttcctata gcaaaaatcg
    18181 ccaaagcatt ttcacttgcc atttttgaaa gctcatagcc tgtttttcca tgtgcaccta
    18241 tggttaaaaa atgctctgta tcacccatag ggataccacc ttcaaccatt aaaatgtatt
    18301 tatttttatg cttttgaatg gcactttcta aattttcttc agcttgccaa cctgctgcag
    18361 ccatcactgt ttcgtgatat tctaaagaaa tataatcaaa aatcaaacta tcaatcgttg
    18421 gagtatcact tcttaacaaa ctctcgctac agcctgtaca ctcagccata tgaagccaca
    18481 caacaggaag cctatcagca agctcagcag cttttgccac cataggagta aaactcgctg
    18541 gcaaagccaa aaatgcagtc atagcacctg cccatttcat aaaatccctt ctagaaaaac
    18601 ctgacttttc taatgctttt gtaatactat cattgtcttt caaagaagga agcttttcaa
    18661 gagccgataa acgcgactct atttgatgat aatcaatcat tatatttcct ttataacatg
    18721 aaatttattc tctataaata ataaaataaa gaaagttaaa ataaagttaa aaacttactc
    18781 tcataagtaa atattagcat cactcttaat taaagcttaa tcataagcct tttttaagtt
    18841 tgcgaatcaa aaatcttgca ggatgaatag cgtggatgta ttttttttct aaacacaagg
    18901 gttcattatt tatcaatgca cacaaatacc ttgccgctaa aacacttgta ctaaaacccc
    18961 ttgacccatg agcaaaatta aaatacaaat tacaagacat tttagctggt ttttgctcct
    19021 tattttttgt ccataataaa gctttatatt cttctttata aaacgcttca tcataagcat
    19081 ttccaactat cataaagcga tcactcgaat aagatctaaa acctacttta gaacctatga
    19141 tttctaattt tgtattttta tccataaaat cggctatatt ttctatattt tgtttatcat
    19201 cttcttcttt tgattctaaa cttgcattaa gcctatcata acttgcacca attacttgca
    19261 aatcatcttt tacagggcaa atataagcct tagaagataa aggaaatggg gtatctaaaa
    19321 aaggttttag atgtgtaact tgacctctta ctttgcttaa tttcatctca tcataaaaaa
    19381 caaagtcttt tgcatctgca cccatagcat aaatcaaaac cgcataatca cttttaacaa
    19441 catcattttt aaattttaaa ctaaaacacc cattttcaaa tttataagct tgaaattcat
    19501 gattaaaata tatacaagct ttgctttttt caaaaagatt tttaaccaat ttttttggaa
    19561 aaatcactcc accctcttct aaaaaagctt gattttttga aattttaaac aaaacatttt
    19621 ctctttgcgt gtcaaatctt tcttgcatta aatcattatg tgcaaactcc accacaccct
    19681 taaattctaa atctaaaatt tgtctataaa aacgacttgc ctctataaaa gaaagctctg
    19741 aaaactcccc taaatttacc ttaggcttta agattaaaga gcttaaaatt ccactttcat
    19801 ttccacttgc acccttgcct aattctaaat gtttttcaaa aatatctatt tcaaaacctc
    19861 ttaaactaag ctcataagct aaaacagcac ttgatatacc tgcaccaata atagctactt
    19921 ttttattttt taaagatgaa aatgttcttg aaaaatacgc ttctttgtct ttaaactcaa
    19981 gctcattttc caaataagct ttaatcattt ctctttttct aaaacctttg gttttttcta
    20041 ctctaaagcc atattttttt aaattttttt gcaaaaaact tgccgaagaa aaggtgcaaa
    20101 tttgtgtatt ttttttagaa agccttgcca cttcaaagat taaattttca tcaaacattt
    20161 gcgagttttt atttggagaa aatccatcta aataccaaac atcagcttta aaatccaatt
    20221 cttttaaaac agctatatct tcaaaaacaa gatctaaaaa acaatcttca aaataaaaac
    20281 gataaattcc ttctttagcc ttaggataaa attttaaaaa ttgttctaaa agctctttaa
    20341 actcttcata aaattctagt ttttgataaa tttctcttaa ttgttctttt tcgatataaa
    20401 aagcttctac gctaatataa aaaagttttt taggacgctt agaaggggta gtttctaaaa
    20461 agcgtttcaa agtaagaaaa aaatttaaac ctatgccaaa accactctct gcgataataa
    20521 aattttcttg atttttccat tcaaaagaat gagtgtaaac aaatttgctt tcatttaagc
    20581 catctttgaa attaaaataa aaatcatcaa aatccaaaga aaaaggagta ttatccttaa
    20641 aaattagctt agcttttttc atcggttgtt ataaaaataa ctctcaactc catcagcaat
    20701 acccttaacc aataaatctt gaaaagcttt attggcgatt cttttgcctt catttggatg
    20761 tgtaatatag ccaatttcaa tcaaaattgc aggcatttgc gcacctacta aaacccaaaa
    20821 aggtgcttct cttacaccgc catctacaat tttatacttt ttgcgtgttt gagtgagtat
    20881 atttttttgt acatcaatgg ctagtttatt tgaagcaacg attttttcac gatttaagaa
    20941 atttaaaata ctttgttttg agaaataatt aatctcttca aaatcccctt gattttcttt
    21001 ttctgctgcc tttttacttc tttcacttct tgcaggactt aaaaagaaag tttccacgcc
    21061 ttcgctactt ttggcttttg tggcatttgg tgccgcgtta gcatgtatag aaataaacaa
    21121 atccgctctt ttatcattgg catatttggt tctatcacga agattgataa atttatccga
    21181 acttctagta taaagcactt tataaccgcg ttttttaagt tcatttccaa gttttaaagc
    21241 cgtacttaaa actatatctt tttcttttaa acttcctttt ttatcactta aagcaccgct
    21301 atcttttcca ccatgccccg catcgataac cacaagcttt cctgatttgt aatttgtatt
    21361 taaagtttta ctagaacttt gagttgcttt tttgtttgca ttttgatttg tagtttgtat
    21421 ataaaaacct aaagtgagat tattattatc caactccttt aaaagtttaa attctttagg
    21481 agcactcaaa accacacgaa cggtttttgg attgtattga gtaactgtaa tcacattttg
    21541 tccaaaagta aagctttttc tattaccttc taacacaccc ttaaaactta caacatatcg
    21601 gaatttttga tctttggtat caaatactgc tatttctttt tcatctaaat catcgcttaa
    21661 atttaacacc acagcattag aaattttatc cacatctaaa acatataaag gttcttgatt
    21721 ttctttttca ttattggttt ttttatcttg tttttttgtt tctaaaactt tggttttaat
    21781 ttctgttttt tgatcttgct ttttctctga aattttacta acttgctcag tctttttttg
    21841 gctagtagtt tcttttgaaa aaattatttt ttcttcttta aaagatatat caataggaat
    21901 tttttcttta gcataaacca ctatgcgtat ggttttggga ttaaattgtg aaatcactaa
    21961 acgatagtca tcaaatttaa actctttttt acccccttct aaaaccccat caaaatcact
    22021 aataaaacga tagtttcctt tttcgtctaa agcaaaactt tttaattgat ccttatccaa
    22081 atctgcattt agttcaaact ctacaccttg gtttgtttta cttgacttta aaacataaat
    22141 tttatcatcg ctttttgctt tagaaacgat actgctcttt ggtgcttgcg aagttttaga
    22201 atttgttttt tctgtatttt ttatttgttc gttagatgat tttttttcat ttttttgaac
    22261 tgtttttata ggttcaaaag ttgatttttc agtgtcttga gaaatatttt gaaccttaat
    22321 atctttaata acagcctttc ttaaagcatt aatacttgtt tcacttatac cactttcttt
    22381 taactcatta gcatatgact tgtcatctaa atttaaagta tttgaactga taatcaatct
    22441 ttttaaaatt tcaattttag ttttttcatc ttcattaata acactttgta tataaaggct
    22501 tttgagctga tggtgaaatt ttacttgcac ttcactttta gaaccgataa aatttttatc
    22561 aaaatttgca agttcatttt cataaactcc aaaaagagtt gtgaaaacaa atactaaaaa
    22621 tacaaaaatt ttagccatta ttcaccatta accaattttt ccataagttc tttaacactg
    22681 ataagcttat ctaaacgata tccatttgca cctgtaaaga aaagtcctgt ttcttttttg
    22741 cctgaccacg catcaaaaag cctatctgct atacaatacc ctactttagt cgcctctttt
    22801 ccacgtccac aaggcgctac acaattgctt atacaattaa tctttggacc cattctttta
    22861 tctaccaaat ttaaaagatt ggttctaact ccacgagcag gatagcccac aggagattta
    22921 ataagctcta tatcttcttc tttagaagct agcaaaacgc ttttaaactc ttcactcgca
    22981 tcacattcaa aagttcctat gaaacgcgtt cccatttgaa caccactagc ccctaaagaa
    23041 atagcatttt ctatatcttt tttatcccaa attccacctg cagcaatcac gggaaaagac
    23101 ccccaatttt tagcctcttc taccacagga gcgattaatt tttctagctg ataattcgga
    23161 tctaagcact gctcataagt aaaaccttga tgacctccac tttttggccc ttctaaaacc
    23221 actgcatcag gtaagcgatt gtaacggctt tgccatcttt tgcaaataat ttttaaagcc
    23281 tttgcagatg aaatgatagg cactaaagcc acatcaggaa aatctgcagt aaattcaggt
    23341 aaatttgtag gaagtccagc gcctgaaaca atcacattaa aaccaacctc acaagcatcg
    23401 cgtgctattc ttgcataatc attacttgca cataagatat tacaccccaa aggtgcatcg
    23461 ccacaaactt ttcttgcatt attaatcaaa gcttgcaaac ccttgcgtga gtaaaaattt
    23521 tcacttccat aaggcttagc gtttaattct ttacttgcat actttctttc ttcataatat
    23581 cctgttccca cagaagaaat aatcccaagt ccaccattta aagaaactgc agaagctaat
    23641 ctatcccagc ttatgcctag tcccattcct ccttgaaaaa tgggatattt tatagtatgt
    23701 tttcctattt gtaagggttg taaattcatt cttttacctt taattttgca aattttcttt
    23761 tacctatttg taagatgtat tctccttgtt ctaaatacat ttgctcgtcg ctaacttttt
    23821 gagaatttac acttactgca ttagcactga tgcttcttct tgccgcagaa gtagaacttt
    23881 ccaaaccaca ttcaaccaaa gccttagcaa gccaaatttt tccttgtatt tcaaactcag
    23941 ccatatcact tggcaaagca ttttgagaat gaattctatc aaattcagac ttagcattat
    24001 tagcctcttc tttggagtga aaacgctctg taatctctaa agctaaattt tctttagctt
    24061 ttttaggatg taaattgcct tgttctatat ctttttttat ttgcgcaatt tcttctagac
    24121 ttttttgact taaaagttca taatatctaa acatcaattc atcactaata cttaaaattt
    24181 tagcatacat atcattagct ttttctgtaa caccaatgta attatttaaa ctcttactca
    24241 ttttgtttac accgtctaaa ccttcgagta aaggcatcat aatcacagct tgttcttttc
    24301 ctatgttata aactctttga agctgtcttc ccatcaaaag attaaatttt tgatccgttc
    24361 cacccatttc aatatcgctt tttaaagcca cactatcata tccttgaagt aaaggataca
    24421 aaaactcgca aatcgaaata ggactttgct ctttaaatct cttggtaaaa tcgtcacgct
    24481 caagcattct agctacacta aaagttgaag taagctctac tatacccgcg gctccaagtt
    24541 cattaagcca agtagaatta aacttaatct gtgttttttc tttatccaaa accttaaaaa
    24601 cctgcgtttt ataagtttta gcattgatta aaacttgctc tttatccagc tttttacgcg
    24661 ttgcactttt tccacttgga tcgccaattt gtcctgtaaa atctccaatc aaaaactgca
    24721 caatagctcc atgtttttgc aaaaaagcca tttttgttaa aaccacgcta tggcctaaat
    24781 gtaaatcagg cgctgtagga tcaaaccctg cctttataaa gaaattttca cccttttcat
    24841 aataattttt aattaaattt tctattcttt cttcatcaat aagctctgca caaccacgct
    24901 taacttctgc taatattttt tttatatcca taataaacct ttttaacttt ctttataagc
    24961 atcatttaaa gatgtaaaat ctaaaatttt acaacgagat tttaacctat ccttgacact
    25021 atctggattg atattatcag gaatttccat tgtaatctca aaataatcta ccgccgaatt
    25081 taaatcactt gataaattaa ttgttaataa atttatctgc attttagcta aaaatgccaa
    25141 aaattccgct aaaacacctt ttttattttc caaagaaaaa atcaatttat aagatttagg
    25201 gatgttagaa tcccatttta taaataccat atcttgatta ttatctatca ttttatcagc
    25261 tctatcgcaa agcttatgat ggacaatagc gttaccacct ttaacaaaag ctaaaacagc
    25321 atcacctctt tttggatggc agcaaaaatc aaaatccaca ttagcgattt tatggttaca
    25381 atatagagta aaatttccta ttttttgctc tttaatctca tatttatcaa accaatatga
    25441 cttcttggcg tattttttaa gaccattaac tatatctttc aaataagcac tatctgttgc
    25501 tacttgtcta atacgtctga ctaaattttc tttttctatc caagtttcaa ttctgttttt
    25561 atcaactcca aaaataaaac ttaacatatt aatagaactt gctagattaa tctctctgat
    25621 tttttgcttg caaaattccc ttatacttgc ttttgctttt cctgttttaa cactatctat
    25681 ccaagaacag cgataaaatt tatcattgct agtaaccact cgcacaatat cgccattttt
    25741 aagctcggtt aacaaaggta ctttaatacg atttacataa gcactttttg catgaagccc
    25801 tactttggta tgcacttcat aagcaaaatc aagaaccgtt gcaccacgag gcaaagtgaa
    25861 aatttctccc ttaggagaat aaactgcgac atcttcaaca taaagactat ctttagcata
    25921 ttcataaagc tcaatagcat tataatcttc tgcattttca agattgttta tactttgcat
    25981 tgaaatatct gtaagccaat caagacaagg cgcaaccacg ctgccatctt ctttatattt
    26041 ccaatgcgct gctataccaa attccgcaat tttatgcata tcaaaagttc gaatttgtgc
    26101 ctctataata cttttagcat caaaaagtgt ggtatgtata gtttgataac cattttgttt
    26161 aggcaaggct atataatcct taaaacgcga aaccaaggga ttaaaatgtg tatgtaaaat
    26221 tcccaaagct aagtaacaat cacttacttt ttcaaccaaa attcttaccc caagcaaatc
    26281 aagaacttct tcaataccaa tgccttttct ttgcatttta agataaatag aatagctatg
    26341 tttaatgcgt ttttgaattt caaaactacc ttgtctaaag ccattactca aaaataaaag
    26401 ttcgattttg gaaataaatt catttaaacc taattgcatt tcttgattat tggaattgat
    26461 ataattgtca ataagcttat actcatctgg cataagatat ttaaaactaa gatcttccaa
    26521 ataatttttt atgcttgaaa taccaagtct atgggctatt ggggcatata caactaaagt
    26581 ttcttcgctg attctttttt gcttatcttc tcttagaata tcaagagtaa gcatattatg
    26641 cagcctatcg cataacttca caatcaaaac cccaacatct tcaatacttg ctaaaagcat
    26701 atttctgaaa gtcaaggctg atttagttaa acttttttta gattttgatg aaatgagatt
    26761 atcttctcta atttctataa ttttagtaag tcctaaaaca agttttaaaa cctcagaacc
    26821 aaactgctct ctaagttctt cttcagtgca gtttgtatct tcaatcacat catgcaataa
    26881 agcagctaaa atattgcttt tattttcact taaaaatcca accagtgttg ctactaaaat
    26941 aggatgtacc gcataaggct ctccactttt tctaaactgc ccttcatggc aaaatataca
    27001 gtaatctacc gctttttcaa gaatggcatc atggccacaa atttcgaaaa gcaaagcctt
    27061 agcagcttct aaatctttac aattttttac attatcgatt aattgttcaa gcaataattc
    27121 ttcatcgatt ggtttcaact aaaccctcta aagtgatttt attttctgca atttcatata
    27181 aagctatatc tgcaagttta tttttatttt tatcaaagtc taccaaaggg gttgctccat
    27241 ttgccaattg ttccgctctt tttgctacca ctaaagaaag gcgatatcta tcattaccca
    27301 ttttttccaa agcttttgcc gctacttctt ctattctttt atccataatt ttctccttaa
    27361 ttatttttaa cggttgaaca aaggctagta tcaccttgta tgattttaag taaattaccc
    27421 tcttcaaaca tattacaaac cacaatagga agtttgttat ctttagctaa agctatagct
    27481 gtatcatcca tcactttaat attatcttgc atagcctcat cataactcaa agtatttaaa
    27541 aatactgcat catcaaattg ttttggatct ttatcataaa ctccattaac ttttgtagct
    27601 tttattacca tatctgcatc aatttccaca gctcttaaaa tagctgttgt atccgtagta
    27661 aaataagggt ttccagtacc tgcagcaaaa accacaacac gacccttttc taagtgtctt
    27721 tgcgctcttc tcataatata agtttcacaa aatgcttcca tctgaatggc gctttgaacc
    27781 ctaacttcaa gtccagagct ttccaaagct tcttgtatag caatagcatt gataaccgta
    27841 gcaagcatcc ccatatgatc tccacttgtc cttttaatca atccgccctt agcagcactt
    27901 actccgcgaa taatattacc accgcctata actatgccta cttctatttg attttttata
    27961 agttctttaa tctctgaagc tatgaatttt aaaatagaat tttctatacc aaagccattt
    28021 tcacctgcta aagcctctcc tgaaaatttt actaaaactc tttttctctc ttgcattatt
    28081 tctccttatt taacttgaaa ttatatttta aattccatta aatttagcta atttaagcta
    28141 atgagttcca aaggattgat atgaaaattt ttttgagtta cttcaaaagt aagatcattt
    28201 tttattctac ccactacggc acctttttta atattcttac caactttaat attaggagca
    28261 atcttatcta aatgtgcgta tattgtatgt atgccattat catgttcaac aataacaact
    28321 cgagctagca tactagtatc tttagcaaaa actatttttc catctagcac atttttaaca
    28381 actgcatcgc ttttattgct tcttaaaact acattctcgt taaaaatttt aagattgtaa
    28441 acaggatcaa cataatttcc aaatttttgc ttcacagtaa aagaatccaa tggagctatg
    28501 gttttttttc ctgtgtaacg cttgactgaa cttccttgat agcttgaacc taattgtctt
    28561 attttttgat tattttttac tattttagta tcatttttgt ttgaatttgc atcttcttta
    28621 tcattaataa tttttaattg atttaatgtt tttctaagct cttcttgctg agcttgtaaa
    28681 tcatcgagtt tttttgcata tatagctcga tctgtttttt gtttattaat ttcgctaatt
    28741 tgtttttgtt ttaaactttg aagcttggct aattgagcgt tgtaatcctt aagactttca
    28801 ttgattttct taatctgagc ttgtttatca tcaataagcc tgcttactcc ctcataatct
    28861 ttagaaattt taaaaatttc ttcatttaaa actttgttta aacttcctaa aatttcaaaa
    28921 gccataaaac tttcttcact ttcaatatag ccttgaggga taggtaaatc ataagcaaaa
    28981 tctttagcca ttaaagatat aagcttacct tccatatttg atttactttt aagcaaatct
    29041 tcattttggc ttgtaagggt gtttaactct tgattttgag ccttagcact tgcttcaagc
    29101 ttagaagttt gtgaatttaa gctttcaatt tgcaaactta gatctttcaa acttttttca
    29161 ccatttaaaa tatcgctagc caaatcttca agttttttat ttaactgttc ttgtatgcgt
    29221 ttattttctt ctaaactttt tgttttttca tttatagcgt ttgctaaact tatatcaaca
    29281 aacaaaaaaa aacaaaaaaa gataagaata ttttttctca tcttttaacc ttaaacataa
    29341 ccgtatttac acacaacaag caaataaaca aagtagctaa aaaaattaaa gtcaaatgta
    29401 aaataaaatt aataggtgga aaaataatat ctacagcctt taaactttct tggataatag
    29461 aaagatcaaa aatttgggta aaaaaggcaa gtaaaataac aaaagcaata aaacaatcaa
    29521 ccacaaccac cttataaagc ataaaagatc taaaccaaaa cggagctcca aataaacaca
    29581 taatttcaat acgatcggta tgttcataaa gccaaattct catctgtttt aaaaacaaaa
    29641 caaaggcaag taaaataatg ataaacaaaa ataaccaaaa aacaaatttc atcaaaataa
    29701 gcaaagagta tatcttatca tgggttttgg aaaaagtttc aaccttacta acacctacaa
    29761 tatttaaaag ttgattttta atcgaattta gttcattttg atcgggtaaa gaatttaatt
    29821 ttaaagtata aaattttggc agagaatctt ttaaaacttt caaattcttt tcagaaacat
    29881 catttttcaa acgatcaatt aaatccttag gatctaaaga ttcaagtcca gcaaaaaatg
    29941 gtacttttgt ttttactaca ttctgatcaa gttcagtttt gctgacaact ataatattat
    30001 aatctttatt aacaagttct tcataatgct tcaaagttgc atttgtaatc aaaataaatt
    30061 caaaagcaaa catcataaaa agtaaaggta aaattaaaga taaatgtgtt ttaaaaaatt
    30121 tcattcattt ttccattttc tatattaaaa cgacgataat ccactcttaa attactagga
    30181 attctatgtg ttaccactat aacacaagtt cctaaaagct ctctagcaga ctttaaaaga
    30241 gtccatataa tatcagaaga atactcgtcc aaatttcccg ttggctcatc gcaaagcaaa
    30301 agctttggat tatgagctaa agccctagcc atagcgacgc gttgttgctc accaccgcta
    30361 agttgattag gcaatttatc tgctttaaaa gttaaattta catgctttaa aagcttagta
    30421 gcttgatcat ggcatacttt tttgctataa cctttaatca ttaaaggcaa cataacattt
    30481 ttttcaacac tatattcttg tacaagttta taatcttgaa aaataatccc tattctttga
    30541 cgtaatttta aaagttctaa atttccaatt ttattcatca aagatccaca tacttcaagt
    30601 ttaccagaaa taggttctaa atctccataa aaagacttta aaagcgtact cttaccactc
    30661 ccacttttac ccgtaataaa aacaaaatca tcatccttaa aagcaaaact cgcttcttta
    30721 ataactagtt catcataacc taaagtaagt ttatttgctt ggattaaatt aggcatcctt
    30781 tttccttaat ttcccttttt aaatttttaa attatgcttt atttttgctt aattttcaag
    30841 aaaaattata ttttaaactg aacttttaaa atttctttta attcatttat cgctttaata
    30901 ttttcttgaa ttttaaatgg ctctttaaaa gcaaaatcaa tcgttttatc aagatgcaaa
    30961 taacaatgtt caggcttatt aaaagctcca aaagcaacct ttaaaagcaa attctcatct
    31021 tgtttataga tgctttcaaa atgcaagaaa aaatcatctt tttttatagt aatattttta
    31081 aagttctgct ctattttttt caaatcctct ttagaaaatt caaccgatga gagattaaat
    31141 tcatttaact catagttttt acactcttgg ttaaaattcc acacccaaag atcatatata
    31201 tttttttctt gctttttcca tctatcttca tatttgcttg aaatttctaa attttcattt
    31261 tttctaaggc taaattttgg agcaggaaaa gtcaaaaatt gctctaaagt aaaattaaaa
    31321 tactcaaaac tatctgttct aagctcaaaa cgaccatttt gaactaaaac cctagcacat
    31381 tctttgcaaa aatctttccc aataactcgc ctatgaggct ttttatccca aggaacaggg
    31441 aaatgtaaaa aaatcttttc aactgatttt gattttaata cactcaataa caatctcgca
    31501 tcactttgga ttagcaaaat attatttaca ttttgtgctt tagcaagttt agccacttga
    31561 gttaaagctg ggttgtaaat ttccacccct aaaattaaaa catttggatt ttcttttgct
    31621 tgataaagca aatgtcttcc tgatccaaag cctatttcta tataaatttt accttgaagt
    31681 ctagataaaa gctcatcaaa attatcaacg ataaatggtg ttttttcaat taaagcatta
    31741 tttttaagtc caaaagcttc attgataata tcctcacaaa aaccttcttt aaagattttt
    31801 aaagcctttt gcaaataacc tattttagaa ggttttgtat gtttatcgcc tttaatcaca
    31861 aaaccatttt gtgctttttt aatctgcaga aaaaaactct cttcttgaac ctttgtataa
    31921 ataagactaa cattatcatt cttagcaagc caaagaaatt caacatcatc cttactataa
    31981 ggcagattta tttctttgat ctttttactt ttaaaatttg gcactactga gccgccttaa
    32041 ctttgcttga aggttctgaa cgaagcccgg ctgaatcaat agcaataact tcataactat
    32101 attccacccc tggcaaagct tttacatctt ttaatcgctt ttctttaatg cctttaaaaa
    32161 ctgcattttg ctccccgcca tagcgtctta cttcatactc aacagctcta gtatcattat
    32221 cactccattc taaatttatc ccttcgcttg tactttgagc caaaataata ctaggagcca
    32281 aagggttgcc taaagtttta ccttctacac catcttttgg cataggactt tcaagaccat
    32341 ctttatccac cattgttact ttataatact tgcttttacc tgctccttct actatatcct
    32401 cataagaatt tttatcagtc tttgccaaaa cactaaaagg aaggaagctt gagctcgtag
    32461 aataaacttt ataataagaa aaatcttcat acgtaggagc atcccaagtt aaaatgattt
    32521 tactagaacc atctgtgcta gcacttaaat gctcaacttg aggaggtaaa gccttgcttg
    32581 tagaacttac aacttgactt gacccactct ttatcccatt aaaactcaca gcaataattc
    32641 tataacttga attttcatta ggctttaaat cactatcgat gtattcagcg tttaaacgat
    32701 tttttacttc tgcaattttt ttaaattctt tatcatcacc tttggttctt tcaataatat
    32761 aagaatcaac cctaaaatca ggatgcggac gccaaataag tttaatacga ttaggcaaat
    32821 tagtcacagc ttgaacaaaa ggaacagctt caagtcttgg agctgtgctc acttctataa
    32881 ccttgccatc ttctgaaatt tgtccttgct cattaaagct tttcatcata taacgatact
    32941 tagtaccagg ctctaattta gtatctacat aatgagtttg aaacttatct ttaatagtgc
    33001 ctacaagttt aaaatcagga ttttcatcac tagaacgata caaataaaat cctttaatat
    33061 tttcattata taaaggctcc cattcaaaag caatattact catatcacta agacttttta
    33121 aactttcaac ctttggcaag ctttcattta cagcaggctc tttacttgaa gctagcgaat
    33181 tcatttgcga aacactacaa gcgctaagca aaagagttaa aaaactcaag taaaaactca
    33241 agcgaaatct tttcatcatt ctctcctaaa ttaatttgtt caaacataat atttttaaaa
    33301 tcttccatca aaggtgcttt aacaaaaatt tgttctttgg tttttggatg gataaaatac
    33361 aaaaaataag catgtaacat tatcctacaa tcatacttac ccttataacc atacaaacta
    33421 tcacctaaaa tatagcgatt taaactagcc aaatgcgctc taatttgatg agttcttcct
    33481 gtaaaaagct tagcagccat caaagttaaa ttttcagttt ttactacatt tataaaagct
    33541 gattttgcgt ttttactgaa tttattttcc ttatctatgg ctattttttt aatagcatta
    33601 gaaggcgaac gcattaaaaa tttttctact ataattttat cttcttttag tggcaaatca
    33661 attaacgcaa ggtaaattct tcccatgctt ttatctgcaa gctgttcact taatttttga
    33721 tgggtgaaat tatttttcgc tattagtata gctccgcttg tatctttatc taatctatgg
    33781 acaagaccag ctcttatctc tcctcctaaa tttgataaag tatatttttt ttctattaac
    33841 caatccacca aagtggcatt tttaacgcta cttgctccat gaacgactaa atttgaaggt
    33901 ttatttaaaa caagcaagtc ttcatcttcg tataacacat caatatcaaa atccacttca
    33961 aactgaggtt ttatctcatt gcaaagcttt aaacttgcaa tagaaataat atcaccattt
    34021 ttaagcttaa atgaattttt atcttgaatt ttatcattaa cctgtacaca atctttttct
    34081 ataagtaaag caacttgatt gcgactttgg tttaattttt tagccaaaaa tacatcaagc
    34141 cttgaatttt catctactaa aaaagtttgc attttttcct tagaggtttt gataaattta
    34201 aaattttagt ttataattat agctttatat taccaactga aggcaaattt tgtttagatt
    34261 agatagaaga attttaactc attttgacta tatacaaccc attttatttt tacccataat
    34321 tcttatttca tttttcttaa tctttgaagc taatcctttt ttagcagaaa aacagtttgt
    34381 ttatgcctgt gtgggattgt ttgcttttat ggtttttttc ttctttccca taaggaaatt
    34441 tatttggatt attcctgttg cttattggat taatattttt ttattgctaa gcgtagatat
    34501 ttttggggtt gaaaaattag gtgctaaaag atggcttgaa attcctttta ctcactttac
    34561 tatacaacct tctgaaattt ttaaacctag ttttatttta atgcttgcct atcttattta
    34621 tcaaaatcct cctccaaaaa atggatacaa acttaaacaa ttcatcaaac ttagctttta
    34681 catcatcttg ccttttttgc taattgcaaa agaacctgat ttaggaagtg ctatggtttt
    34741 actacttgtt ggttttggag tgctttttat catgggagtt cattataaaa tttggttaag
    34801 tattgttata gctataagtg ttagctctcc tattatttat acacatcttt taaaacccta
    34861 ccaaaagcaa agaattcatg attttatttc agaaaaacca agttatcaag tagcccaatc
    34921 aatgatagct attggaaatg gtggtttaac cggaaaatct caagatgaag ctacgcaaac
    34981 tcattttaaa tttttaccta tttcaactag tgattttatt ttcgcttaca tgatagaaag
    35041 atttggattt attgggggat tgacattaat tatattttat attttactta tttttcatct
    35101 acttagttta aattataaac ttaaagatga ttattttgct agagttgcta ttaattgtgt
    35161 tgcattattt atttttattt atgcggcagt aaatatttca atgactatag gttttgcacc
    35221 agtagttggg atccctttgc ctttttttag ttatggtgga agttctttta ctatttttat
    35281 gatttttttt ggaattttac agcatttaat cacttttaga tatttttgga cggatataaa
    35341 ggctaaataa aatattttta agcattaata agatataatt ttatctttta attcaactta
    35401 ggcggattta tagctcagtt ggttagagca accggctcat aaccggttgg tcgcaggttc
    35461 gagtcctgct aaatccacca ttctacatat aagctataga ctctttcttt aaaaaataac
    35521 ttttagttct ttaaatattt caatcttata taaaaaaagt atgtgatgtg attttttgaa
    35581 agataaagtg gtggttagag gcagaatcga actgccgaca cgcagatttt cagtctgctg
    35641 ctctaccgac tgagctatcc aaccacaatg tttgataaag taaaaatgta attgtatctt
    35701 tttttcttta atttaagttt aaatacaaaa ataaaatttt atttccctta aagttttaat
    35761 aagatagaat acccgcttta gatcattatc aaatggaaat tttttgaaac aatttggact
    35821 agatagacga acttttaaaa ttttactagc tggttatatt attattgcat tgtttggggc
    35881 tttattgcta cattcaagct gggcacatac aactcctatt gattttttag atgccttttt
    35941 tacaagcaca tctgctgtta gtatgacagg attagtagtt aagaacactg cggttgattt
    36001 taccttagca ggacaaatta ttatcttagc tttggtgcaa attggaggct tgggatatat
    36061 gggtataggt ttatttgttt atatactcat acgcaaaaaa gttggtttta gtgcaagaaa
    36121 tttactaaaa gagtctttat tttatccatc aatggatggt ttatttaaat tttttaaaaa
    36181 ggttttgctg ttcattttta ctatagaatt gataggtgct atacttctca ccatgcgttt
    36241 tgcccttgaa atgaatttta agaaagcttt atggtttgga atttttcatt ctattagcgc
    36301 ttttaataat tctggattta ctatatttga acatggattt atagcttata aacatgatat
    36361 agcaattaat cttattatca cttctttgat tattattgga gggcttggat attttgtttt
    36421 ggttgaatta tacttttttc aaagaaaaaa attgcaaaat ttaagcctac atacaaaaat
    36481 ggttgttgtt gcaagtattt ttcttatttt ctcttcaacg cttattattt ttgcttttga
    36541 atactcaaat cctcaaacta taggacattt ttcatttttt gataaaattt taagctcata
    36601 ttttatcgct attaattacc gcacagcagg atttaatacc ttagatatgg gacatttgca
    36661 tgatgcaagc ttattttttg gatcattgtt tatggttatt ggtggtgcac caggtggaac
    36721 agctgggggt atgaaagtaa caactgtaat ggttttattg ctctatgctt attggagtat
    36781 ccgcgatgga agagttagaa tttttggaca tgaaattcca agagaaacta tatctaaagc
    36841 ttttattata gctgtaggtt cagctgttta tatagtaata gctgttattt tgctttcctt
    36901 gctagagtca aaatttgatt ttatagcctt gctttttgaa acttcttcgg cttttgcaac
    36961 cgtaggaatt tcagtgggaa atggtggaac tttatcttta tgtgctttat ttagtgatcc
    37021 tagtaaggtg attatcatca ttatgatgct aagtggcagg ataggtgttt ttgctttttt
    37081 actctcggta ttcaaacaag acaaagctat tcatttaaaa ttccctgaag gaaaggttaa
    37141 tttataaagg taaaatcgtg aaaaatctta attatggaat cataggactt ggaaaatttg
    37201 gctcagttgt agcagatgaa ctcattgctg gaggtcatac tgttatcgtt gcggataaag
    37261 atgaggaagc tttaaaaagt atacaaaatc ctccaagcta tgcttatatt ttagattcta
    37321 caaatatttc agccctaaaa gaagcaggct ttcatgatgt tgaagttgtt attgttagca
    37381 taggagaaaa tgttgaaaaa tcaatcctta ctcttatggc gcttaaagat ataggtgtta
    37441 aaaatatcat tgctaaagca acctctaata tccatggtca aattctttct aagttaggtg
    37501 caacaaaggt tatttatcct gaaaaagaaa gtgctaaaag actagtaaaa gaatttttaa
    37561 ctaaagatgc tgattatgaa gtttttgatc tttcagcaaa tactatacga gctattaaga
    37621 tcaatataga tgaaaaatta gcaggaaatt ctttaaaaca tgtagcacaa aatatgaaag
    37681 tgatttctta taaaaaatta aatagtgact gggaaatact acctgattta gaaaccacga
    37741 cagtttatag tggagatgtt gtaatactcc ttggaacagt taaagaactt agagaatttg
    37801 aacactaagc aagatttaaa gccttacaag cctttacaaa acgctttaag gctgtttttt
    37861 ctttggtaga aattttatga tatataactt catctaaata atatctaaca tcttttatat
    37921 ctaaatccct tgttttggca taattttgca gtatataata aggaatttta atctttgttt
    37981 ttggaaattt tttcaaaatt tgtttatata aagctttttt ttgcacacaa gaaaatctag
    38041 caaaaacaaa aggcaatcct gttttttcgt gccattttgc acataaatcg atatatttag
    38101 aaggatcttt tagataaagc tttaaagcct tatcacctat aattactttt ccatcttgtt
    38161 ttaatacttt agccagagcg tttgaagttg ctgaacttgg atctttggca tttgatgtat
    38221 ttttttctac taatacactt aaaactcttt tattggcaca aatacccaaa tctaaatttt
    38281 tatatttttt tctagcactt tctatgcttg aaatgatagc tgcatcaatt cttctataaa
    38341 ataaatcttt atttagctta cttggaactc cttttttata ctccatactt gctttataac
    38401 cattaggtag gggatatttc ttaagatata tatgtaaagg taaaagatta atataatcaa
    38461 tttttccaaa aatcatctct tttatagagt gttaaacact ctatctcctg catctccaag
    38521 ccctgggata atataacctt tttcatttaa accttcatca atacaagcca caaaaacttc
    38581 tacatcatca tgcatttggc taaatttttt caaaccttgt ggagcagcaa gtatggatat
    38641 aaattttatt tttttaactc cttggctttt taaaaaatta caagcatcta tagcagtccc
    38701 acctgtagca aacataggat ctataacaat agcagtgcgt ttttttgcat ctttgggaag
    38761 tttttgaaaa taaaaatccg cctttaaagt ttcttcattt ctcacaaacc ccaaaaaccc
    38821 aacacttgca tcaggaatca tcttaaaaac actttcaagc attcctaatg cagctcttaa
    38881 aataggacaa atcataatct tttcatcaag tttttttact atagtttttt gtataggtgt
    38941 tgaaatttca atttctttta aagaaaaatc tttactcact tcaaaaagca aaaaagatga
    39001 aatttcatcg attaacatac gaaattgaaa gggctttgtc tctttagccc ttaaaattcc
    39061 taacttatgt tcgatcaatg gatgattgat acaatgaata tttttcattt taagctttca
    39121 aaataagctt tctcgttaaa attttttacc ttagccacac catcttttac cgcagctgct
    39181 gctacagctg tacttactgc agcttttact ctttcatcaa aaggttttgg tatgacataa
    39241 tctcttccaa attctaaggt acttaaatta taagcctttt taactgcatc acttacagga
    39301 agttttgcaa gatctgctaa tgctttagca gccgctactt tcatattttc agtgatttta
    39361 cttgcacgca catctaaagc cccacggaaa ataaaaggaa aacctaaaac attattgatt
    39421 tgatttggat aatcacttct tcctgttcct acaatcgtat cttttctaag tctagctaca
    39481 tcttcaggca tcacttcagg aataggattt gccaaagcaa aaatcacagg atcttttgcc
    39541 atgcttaaaa ccatttcatc atcaagaatt tttggcgcac taagtcctag gaaaacatca
    39601 gctcctttta aaacttcttt taaagtcttt tccttagaat caacagcaaa ttcaagcttt
    39661 tgaggagtta aatcatttct atctttagaa atcactcctt tgctatctac taaaataata
    39721 ttttcaaccc ctaaatttct atacatctta gcacttgcta tacctgcggc acctgcgcca
    39781 cttacaacca ccttaatgtc tttaaatttt ttaccgctta tctccattgc attcataagc
    39841 cctgcagttg aaataatagc tgttccgtgc tgatcatcgt gcattacagg aattcctaaa
    39901 tcttgtaaag ccgcttcgat ttcaaaacat tttggagcag ctatatcttc taaatttatc
    39961 ccgcccacag ttggagccaa agctttgcaa aaatttacaa tctcttccac actatgaaca
    40021 tcaatttcta tatcataagc attaacattt gcaaattttt taaacaaaca agccttacct
    40081 tccataacag gttttgaagc ctgcgctcct atgtttccaa gtcctaaaac agcagaacca
    40141 tcactaacta tagctactaa attagcctta tttgtataag tataagcaag ctcattatct
    40201 ttagcgattt caaggcaagg ttctgcaact cctgggctat acgccaaaga tagatcatgg
    40261 cttgtagcca ttggcttact tggtacaata tcaattttcc cacctaaatg gtattttaaa
    40321 gcttcttctt ttaaattcat tttattttcc tctaactttt aaaaaatttt ctattctttt
    40381 tttgcactca tcaacctcta aaaattctaa tacttcaaaa atactaggac ttaccgcact
    40441 ccctgttaaa gctatgcgta taggctgagc caaatctttt aactttgctt cttttttttc
    40501 taaaaaatca tttgtaaaat cttcaaaatc tttacctgtt ttttgatctt taagtgtatt
    40561 agcaaatgct tggagcaatt ctaaattatt tttgttaata aatttttgta ctgcattttc
    40621 atcataattt tgcggcgcat taactatact ttttgcacca ttgataatat catgcaaggt
    40681 ttttgcacgc tctcttaata aatcaagtaa aaatcctgcc ttttcacaaa cagataaatc
    40741 aaagccaaga tccttaagct gacggttaat ctcttcaaaa ggcaaagttt taatataatg
    40801 agcgttaagc cattcaagct ttttagcatt ataacaagat gcgcttttat taatatgata
    40861 agggtcaaaa agttttttca aatcttctaa tgaaaaaacc tcatcatcac catggctcca
    40921 acctaaacgc acaagaaaat taagcaaagc ttgaggtaaa attcccattt ctttgtattc
    40981 cataacatca gttgccccat gtctttttga aagcttttta ccatcttctc catgtatcat
    41041 agccacatga aaaaatttag gaattttaaa acccaatgcc tcataaagca caatttgttt
    41101 aggagtattt gaaagatgat catctccgcg aatcacatca cttaccccca ttaaagcatc
    41161 atcaataaca acagtaaaat tataagttgg agttccatca cttcttgcaa tgataaaatc
    41221 atccattata tcctctgctt taaatctcac ctcgccttta accccatctt caaaaacaat
    41281 ctcaccgctt tgaggtgctt taatacgcac aacaggctct ataccctgag gtggcgtgcc
    41341 tgtaaattct ctatatcttc catcatatct tgggcgctct ttggcagctt cttgcttggc
    41401 gcgcaattct tctaattctt ctttactcat ataacaataa tacgctttac cttcatctaa
    41461 aagcttttta acatattctt tataaagatc aaaacgctct gattggtaag ttacttctcc
    41521 atcatgttct aaaccgcacc atttaaaagc ttcgataatt gctttagtag cttctttgga
    41581 atttcttttt aaatccgtat cttcgatacg aagtaaaaaa tttccaccat tttttctagc
    41641 gtataaataa ttataaagag ctgttctaag tccacctatg tgcaaatacc ctgttgggct
    41701 tggagcaaaa cgcgttgtaa gtttttcgtg cattttttgc cttttcttaa atttttattg
    41761 atataatgcg atatttatac ttaaacaaag gtttgaaatg aaaaaaattt tattaagttt
    41821 tgcatttttt gcaagtttag ctagtgcaaa taccattaat gctatagctg tagttgtaga
    41881 taaagagcct atcacaactt atgatataga tcaaactatg aaagcactta aaattgatag
    41941 aaataaagct ttaggcgtac tcatcaatga aaaaatggaa atttcacaaa tgaaacaact
    42001 aggtattgta gtcaatgatc tagagcttga tgatgctata aataaaatgc ttgctcaaaa
    42061 caaaacgact ttaaatgctt tcaaagcaaa tttaaaatcc aaaaatcaaa gctatgaaca
    42121 atttcgtgca aattttaaaa aagatttaga aaaaagaaag ctttatgaaa aaatcgcaag
    42181 tatggcaaaa actgatttta gtgatgatgg agcaaaaaaa tttttcgaac aaaataaaga
    42241 taaattcact ttttatacac aaattaatgc aaatatttat ctatcaaaca atcctcaaac
    42301 tttagaaaat atcaaaaata caaaaaaaac aatccttaaa ccacaaaatg catctttaaa
    42361 cacaagtaat gccgatccaa gacttttagg gcttttatca caaattcctg ttggaggctt
    42421 ttcccctatt ttaaatggaa aaaatggcta tgaactctat gaagttaaaa gcaaagatgg
    42481 ggcacaaact cctgaatatg aacaagttaa aaatgaagtt ttaaacgctt atgtaagcga
    42541 acaaagacaa aatttcatac aggattattt tgataaactc cgctctaaaa tcaatataga
    42601 atatttaaga taaaaattac aattaaaatt tccctttaat agggaaattt taatgtcttg
    42661 caagataatt tgtatcgtag ttattattaa taaaatcagg attttccatc atagaaagat
    42721 gaaaatcttt ggttgttttt atcccactta taagcaactc atctaaagct actttcattt
    42781 ttgcaatagc tttattacga tcttctgccc aaactacaag tttgcctatc atagaatcat
    42841 aataaggagg cacgctatag tcttgataac aatgactttc cattctgaca ttgcgtcctg
    42901 cgggtggaat gtatttagta atcttacctg gacttggcaa gaaagttttg gaatcttcag
    42961 ctgtgattct acattctata gaatgcccat ttaatttaat actttcttga gatggtaaag
    43021 cataaccttc tgctacttta atcatttgtt ctatgatatc aatctcactt accatttcac
    43081 ttacacagtg ttcaacttgc aaacgcgtat tcatttctat aaaataaaaa tccaaatttt
    43141 tatctaccaa aaactcaaaa gttcccgcac cttcatatcc tatagcttta gctgccttaa
    43201 tagcagtttc atgaagtcta gtgcgtgttt tttcatcaag caaaatcgca ggggattctt
    43261 ctataagttt ttgatggcgt ctttgcatag aacaatctct ttcgcccaca tgaatcacat
    43321 tgccaaaact atctcctata acctgcactt ctatatggcg tggattttgt atgtattttt
    43381 ccatatacat agttccatcg ccaaatgctg tcatagcctc gctttcagcc gaccaatacg
    43441 ctttttcaag atctttttca ttttcaacca cacgcatacc acgaccacca ccacctgcag
    43501 ctgcttttaa aatcacagga taacctattt ctttggcaag ttttttagct gcttcagctc
    43561 ctgccaaagc cccatcgctt cctgggatca caggtacgcc tgctctttgc atgacttgtt
    43621 ttgcttttga tttatcactc attaaattca tagcttccac agaaggacct ataaatttga
    43681 tgttatgttt agcacaaatt tcaacaaaat tttgattttc acttaaaaat ccgtatcctg
    43741 gaaaaatcgc atctgcttca gcaatttcag ctgctgtaat aatagctggg atatttaaat
    43801 agctttcaga acttcttgct ttgcctatac aaatgcttgc atcagcgtat tttaaataca
    43861 aagcatcttt atctgcttca gaatacacac aaattgcttt tttacccatt tctttaatcg
    43921 ttcttaaagc acgcagtgct atttctccac gattagcaat taatatgctt ttaatttcca
    43981 ttttataatt tctccaccgc aaataaaggc attccaaatt ctacaggctg accatcagca
    44041 actaaaattt cagcgatcct acaatcaaat tccgcttcaa tttcattcat gattttcatc
    44101 gcttcgataa tagctatagt atcgcctttt ttaaccgtac tacctacttt tacaaaaggt
    44161 gctgcacctg gacttggagc ttgatagaaa gttcctacca tagggctgtt tatacttggt
    44221 ttgtttgatt ttacactttg actaggttga gcttcgttta caacgcttac attgataggt
    44281 tgtggagctg gaactggagg acaaacagga gctggaacat cgcagcacat atctctttca
    44341 agttctattt caaaaccatc ttgttctttg atcttaattt tactaatatt tgcttcagca
    44401 aaaaggttga ctaactcttt aatttcttct tttgtcataa aattctccta caaaatttaa
    44461 gaacttaacc ttgtattata taaaaaaact tgaaatttaa ctttaaaaaa gaaaaaaatc
    44521 ataaaaaata tagatttttt aggttataat ccttacaaaa aattacaaat attaaaaagg
    44581 ttaaaaatgg gcttaaaagc ggataattgg ataagaaaaa tggcattaga acacaagatg
    44641 atcgaaccat tttgcgaagc aaatatagga aaaggtgtgg taagctatgg actttcaagc
    44701 tatggttatg atatacgtgt agggcgtgag tttaaaattt ttaccaatgt taattcaact
    44761 gtagtggatc caaaaaattt cgtagaagaa aatgtagtag attttgaagg cgatgtatgt
    44821 atagttcctg caaattcttt tgccctagct agaactatag agtattttaa aatgcctgat
    44881 aatgtcttag ctatttgtct tggcaaaagc acttatgcaa gatgtggcat catcgtcaat
    44941 gttacccctt ttgaaccagg ttttgaagga catatcacta tagaaatttc aaatactaca
    45001 cctttacctg caaaaattta tgccaatgaa ggtatagcgc aagtgttgtt tttgcaaggc
    45061 gatgaaaaat gtgacaccac ttataaagat aaaaaaggca agtatcaagc ccaaactggc
    45121 ataaccttgc caagaatttt aaaataggaa cacttattgc tttaatttta aaaaaaactt
    45181 aagcaaagga aggcaaaatg tttaacaaaa aaaatatctt aatcacgggc ggaacaggct
    45241 cgtttggaaa aacttatact aaggttttgc tagaaaacta taaacctaat aagattatca
    45301 tttattctcg tgatgagctc aaacaatttg aaatggcaag cgtttttaat gctccttgta
    45361 tgcgttattt cataggagat gtaagagata aagagcgttt aagtgctgct atgcgtgatg
    45421 tggattttgt tatacatgct gctgcaatga agcatgtgcc tattgctgaa tataacccta
    45481 tggaatgtat aaaaacaaac atacacggtg cgcaaaatgt catcgacgct tgttttgaaa
    45541 atggggttaa aaaatgtatc gctcttagca cagacaaggc ttgcaatcct gtaaatttat
    45601 acggcgcaac caaacttgca agcgacaagc tttttgtcgc tgcaaacaat atagcaggca
    45661 acaaacaaac acgctttggt gttacaagat atggcaatgt tgtaggttca agaggatcgg
    45721 tagtaccttt ctttaaaaaa ctcatcagcg aaggagctaa agaacttcct atcaccgata
    45781 caagaatgac tcgtttttgg atcagccttg aagatggagt gaaatttgta ctgagcaatt
    45841 ttgaaagaat gcacggagga gaaattttca tccctaaaat tccttcgatg aaaatcaccg
    45901 atctagctca tgctttagct cctcatttaa gtcataaaat cataggtatc agagcaggag
    45961 aaaaactaca tgaaatcatg atttcaagcg atgatagtca tttaacctat gaatttgaaa
    46021 actactatgc cataagccct agcattaaac ttgtagataa agataatgac tttagtatca
    46081 atgccctagg cgaaaaagga caaaaggtaa aagatggttt ttcttatagt tcggataata
    46141 atcctttatg ggcaagcgaa aaagaacttt tagaaatcat caatcacacc gaaggttttt
    46201 aaaatgctta cttattctca tcaaaacatc gatcaaagcg atatagatgc gcttacaaaa
    46261 gctttaaaag atgaaatttt aacagggggt aaaaaggtaa atgaatttga agaagccctt
    46321 tgtgaatata tgggcgtaaa acacgcttgt gtattaaact cagccacttc agcccttcat
    46381 cttgcctaca cagcactagg tgtccaagaa aaaatcgttt taactacccc tttaaccttt
    46441 gccgctacag ctaatgcggc cttaatggct ggagctaagg tagagtttat cgacattaaa
    46501 aacgatggca atattgatga aaaaaaacta gaagcaagac ttttaaaaga gagtgaaaat
    46561 ataggagcta ttagcgtggt agattttgcg ggcaatagcg ttgaaatgga tgaaatttca
    46621 aaccttacta aaaaatacaa tatcccttta atcgatgatg caagccatgc tttaggtgct
    46681 ttgtataaaa gtgaaaaagt aggaaaaaaa gccgatcttt ctatattttc ttttcaccct
    46741 gttaagccta tcactacttt tgaaggtggg gctgtggtga gtgataatga agagcttatc
    46801 gataaaatca agcttttaag aagccatggt attgttaaaa aaaggctttg ggatagcgat
    46861 atggtagaac ttggctataa ttaccgctta agtgatgttg cttgtgcttt agggataaac
    46921 cagcttaaaa aactcgatca caatcttgaa aaacgcgaag aaatcgcaaa tttttacgat
    46981 aaagaatttg aaaaaaatcc ttatttttcc acgataaaaa tcaaagacta taaaaaaagt
    47041 tcaagacatt tatatcctat tttgcttttt cctgaatttt attgtcaaaa agaagaactt
    47101 tttgaaagct tacttcatgc aggaattggc gtacaggtac attataaacc aacttatgag
    47161 tttagttttt ataaaaaact cttgggggaa atcaaactcc aaaatgcaga taatttttac
    47221 aaagctgaac ttagtatacc ttgtcatcaa gaaatgaatc taaaagatgc aaaatttgtc
    47281 aaagatactt tatttagcat tcttgaaaaa gttaaaaagg gatattgtgg ataagctaga
    47341 ctttagaagc caagatttta gccaaactgg aaaggctatg tatgaactag cttgtgaact
    47401 ttttcctatc cctaggagta tcacagggca aggttttaga gatagcttag aaattttaaa
    47461 taaaactctg ggggggggta tactcaaatt tcactctata aaaagtggca caaaggtttt
    47521 tgactggata gtccctgatg aatggaatgt taaagaagcc tatatcatca ctccaaaagg
    47581 agaaaaaatt tgtgatttta aaaagcataa cttgcacctt ctaaactata gcgaagccat
    47641 cgatcaagaa atcgaactag aagaacttca agatcatctt tactccatag aagaaatgcc
    47701 cgatgctatt ccttatgtaa cgagttatta taaaaggcgt tggggatttt gtctcacgca
    47761 caacgaaaga aaaaaactca aaaaaggcaa atacaaagtc tatatcgatg caaaacacga
    47821 tgaaaatgga gttttagatt atgctgattt tatcctacct agtacgcaaa actcaaaaga
    47881 tgaaatttta atttcaacct atctttgcca cccttccatg gcaaataatg agcttagtgg
    47941 ccctgtagtg agtattttct tagcaaaatg gcttttgggt ttaaaagaaa gaagatataa
    48001 ttaccgcttt gtcatcatcc ctgaaaccat aggctctata gtctatctta gcaaacattt
    48061 agagtgttta aaaaaacatg ttaaagcagg ctttgtgctt tcttgcttag gcgatgatca
    48121 tacttactca ctcatacaca cagttaaaga gaacactcta agcgataaag tcgccctgca
    48181 tacgctcaaa aataaagaaa atttcaaagc ttttagtttt ttagatcgtg gaagtgatga
    48241 aagacaatac aatgccccac ttgtaaatct tggcatagta ggggtatgtc gcacaaggta
    48301 tggtgactat gatggatatc ataactcaaa agatgatctc aattttatct ctgaaaaagg
    48361 tttaatgggt ggacttcaaa gcatgcaaga aatgatttta aatctagaaa tcaacgccgt
    48421 atatgaaaac accatagtat gcgaacccaa tcttggcaaa agaggattat atcacaccct
    48481 tagcactacc aatgacattc ctttggcttg taattttttg gcttattgcg atggagagaa
    48541 tgatatcatc gatatagcca atatcttaaa tatgcaagct tatgaattta aagaactttt
    48601 ggaaaaaata aaattttatg gactggtaaa atgaaatatt ttttagaaca caatggcaaa
    48661 aaatactccg ataaggattt aatagatgct ttttatcaac taggtataaa aaggggtgat
    48721 attttatgcg tacatacaga acttatgaaa tttggcaaag ctttgcttac taaaaatgat
    48781 tttttaaaaa ccttacttga atgctttttt aaagtactag gcaaggaagg cactcttcta
    48841 atgccaacct ttacttatag tttttgcaaa aatgaagttt atgataaagt gcattctaaa
    48901 ggcaaagtgg gagtgctgaa tgaatttttt agaactagcg gggggggggt taggcgaact
    48961 agcgacccta ttttttcctt tgctgtgaag ggtgctaaag cggatatttt tttaaaagaa
    49021 aactcaagct gttttggaaa ggatagtgta tatgaaattt taactaggga aggtgggaaa
    49081 tttatgcttt taggcttgaa ttatggacac gccctaacgc attatgctga agagagaaat
    49141 accagctttt gcaggtattt taaggaattt aagggctttg tgattgacga gctaggacaa
    49201 aaaagagaaa aaaggataaa ttattatgta agagacttgg aaaaagccta tgtatgcagc
    49261 cttgataaga taaatgaaat cgtgcggcaa acaaggtatt acaaaagcat aaaatttgca
    49321 ggagattttc tagaaagcta tgatgctaaa gaatatgtca aagccatagg caacgccctt
    49381 aagcaggata aatttgccat atatgaaaag cttcttttat gaaaaacatt taaaggtagt
    49441 ttatgaaata tttacttgaa tttgaaaata aaaaatactc cacttacgac ttcatagaaa
    49501 ctttttacaa actaggacta caaaaaggcg ataccttgtg tgtgcatact gaacttttta
    49561 atttcggttt tcccttgctt tctagaaatg aatttttaca gactatatta gattgttttt
    49621 ttgaagttat aggcaaagaa ggcactttga tcatgccaac ctttacttat agtttttgca
    49681 aaaatgaagt ttatgacaaa ataaattcca aaacaaaaat gggagcatta aatgaatatt
    49741 ttcgcaaaca aacaggagta aaacgcacaa acgatcctat attttctttt gctataaaag
    49801 gagcaaaaga agaattattt ttaaaagata caacaagttg ttttggggaa aattgtgttt
    49861 atgaggtttt aaccaaagag aatggaaaat atatgacatt tggaggccaa ggacacacac
    49921 taacacatta tgcagaagaa caatttaatg tattttacag atatcataaa attttctctg
    49981 gaattttaat tgatgaaaac aat
//
LOCUS       DAPOLW010000002        32770 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.002, whole genome shotgun sequence.
ACCESSION   DAPOLW010000002 DAPOLW010000000
VERSION     DAPOLW010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 32770)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32770)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32770
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.002"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..415)
                     /locus_tag="ROE18_000049"
     CDS             complement(<1..415)
                     /locus_tag="ROE18_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650278.1"
                     /translation="MLFGFDDKQEFIPQIYRYLNNQELMLTFLTQYNASVDSALKIPL
                     LYAKNTKSLKMIFGNFLHNIMHVSFGKIQNINIKLNTYAFYFQKRKSLIFNTKISKNV
                     DLLRLLRIYLYGICFDAQILFSSYVYDKVSFQNNGK"
     gene            complement(418..732)
                     /locus_tag="ROE18_000050"
     CDS             complement(418..732)
                     /locus_tag="ROE18_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HDX3650279.1"
                     /translation="MSVLVIGADEITPIRAVLHDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLNKEFSCY
                     KG"
     gene            903..2327
                     /locus_tag="ROE18_000051"
     CDS             903..2327
                     /locus_tag="ROE18_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HDX3650280.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSGAYGEIKITADLSAYTKAKIFQKGEVTPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGI
                     KNLTNQEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLT
                     KIWPHSFVPLMDIGEMILNKNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDK
                     SYLEPDLVLEGVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKII
                     TRALKHFEKISPDYAKGIKKALEK"
     gene            2384..2854
                     /locus_tag="ROE18_000052"
     CDS             2384..2854
                     /locus_tag="ROE18_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HDX3650281.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNEYENLKIMIEAGLNVNLK
                     THKGDSLLMLAAYNNSYESAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGRKDVAEFLLKKSKNNFLKKMSLKILKFIKKF"
     gene            complement(2855..3511)
                     /locus_tag="ROE18_000053"
     CDS             complement(2855..3511)
                     /locus_tag="ROE18_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDX3650282.1"
                     /translation="MDEGQKQQFIKLTYFLGEVLGEQYEIVFHVITEDGAYIAAIANN
                     HISGRSLDSPLTAFASELMQNKKYLEKDFLCDYKALVGKSKLIRGSTFFIKNHDKLVG
                     ILCINHDTSIMRDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDILVQSV
                     DSSYLNSDYQLSIAQKEEIAEKLYEKGIFNIKGAVPIVAKFLKISEPSVYRYLKKFKK
                     "
     gene            3679..4041
                     /locus_tag="ROE18_000054"
     CDS             3679..4041
                     /locus_tag="ROE18_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDX3650283.1"
                     /translation="MSNYPKAIGPYSAYREVNGLLFISGQLPINPASGEIESSDIKEQ
                     TKQSLKNIGAILEENGISYDKVIKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEIIAQKG"
     gene            4045..5484
                     /gene="dcuC"
                     /locus_tag="ROE18_000055"
                     /pseudo
     CDS             4045..5484
                     /gene="dcuC"
                     /locus_tag="ROE18_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            5497..6659
                     /locus_tag="ROE18_000056"
                     /pseudo
     CDS             5497..6659
                     /locus_tag="ROE18_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
     gene            6669..8036
                     /locus_tag="ROE18_000057"
     CDS             6669..8036
                     /locus_tag="ROE18_000057"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDX3650284.1"
                     /translation="MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFRVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELDRHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLEVPNISWQSTRDRFIELGFVLGNINATFNKIAHQLLILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLDTLKGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEQQKTFKEVLLADTRVSQVLKEKDIDALLDATSYVGYAPKLVDEFLAKIKN
                     SAILK"
     gene            8045..9385
                     /locus_tag="ROE18_000058"
                     /pseudo
     CDS             8045..9385
                     /locus_tag="ROE18_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
     gene            9465..9689
                     /locus_tag="ROE18_000059"
     CDS             9465..9689
                     /locus_tag="ROE18_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HDX3650285.1"
                     /translation="MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDTSCVILRSDEAKTIEVNLI"
     gene            9686..11527
                     /gene="feoB"
                     /locus_tag="ROE18_000060"
     CDS             9686..11527
                     /gene="feoB"
                     /locus_tag="ROE18_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HDX3650286.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIH
                     KFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGI
                     IAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGF
                     GCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGI
                     YILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAG
                     TFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFQPLELDWKL
                     SVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIY
                     NPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN"
     gene            complement(11524..13017)
                     /locus_tag="ROE18_000061"
     CDS             complement(11524..13017)
                     /locus_tag="ROE18_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HDX3650287.1"
                     /translation="MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLS
                     LGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEHVLEEDFILAVEGGIAAIDTFFLTIGAQGESGYEILEKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEE
                     LKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYTFIEQ
                     NFDENPMPSKDFWKYLEISFILVKGEFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAE
                     KPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKTFGDNITKISSLKAS"
     gene            complement(13021..13845)
                     /gene="fabI"
                     /locus_tag="ROE18_000062"
     CDS             complement(13021..13845)
                     /gene="fabI"
                     /locus_tag="ROE18_000062"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HDX3650288.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVA
                     KAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            complement(13849..14520)
                     /locus_tag="ROE18_000063"
     CDS             complement(13849..14520)
                     /locus_tag="ROE18_000063"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HDX3650289.1"
                     /translation="MIFAANLKCNHTRASFKIYAKILNKTMGVKCDDIIVFPPSIAFL
                     ENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGV
                     SAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFI
                     KLIKG"
     gene            complement(14517..15719)
                     /locus_tag="ROE18_000064"
     CDS             complement(14517..15719)
                     /locus_tag="ROE18_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HDX3650290.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKT
                     KAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            complement(15722..16720)
                     /gene="gap"
                     /locus_tag="ROE18_000065"
     CDS             complement(15722..16720)
                     /gene="gap"
                     /locus_tag="ROE18_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HDX3650291.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDD
                     ERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
     gene            16780..17325
                     /gene="nadD"
                     /locus_tag="ROE18_000066"
     CDS             16780..17325
                     /gene="nadD"
                     /locus_tag="ROE18_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HDX3650292.1"
                     /translation="MKIALFGGSFDPPHNGHNSVILEALEKLDIDKLIIMPTYINPFK
                     QNFSADEKQRFLWVKKLWGHFPKVEICDFETKQKRPVPSIESVKYLYKLYNPSKFYLL
                     IGADHLEKLHLWHDFEKLNSLVEFVIANRNDIEIPKNFKDLKTDKKIASSFIRNTLNT
                     NEVCEEIKDEVKKYYEKLQKN"
     gene            17353..17679
                     /gene="rsfS"
                     /locus_tag="ROE18_000067"
     CDS             17353..17679
                     /gene="rsfS"
                     /locus_tag="ROE18_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HDX3650293.1"
                     /translation="MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGER
                     HALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLEN
                     LKKGRV"
     gene            complement(17710..18087)
                     /locus_tag="ROE18_000068"
     CDS             complement(17710..18087)
                     /locus_tag="ROE18_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 family protein"
                     /protein_id="HDX3650294.1"
                     /translation="MKKILVLLLLCAFAFGASECDRKIDRINKEISFSKAHNDTARTL
                     SLELALKQVQNDCAKDPMFYDKKLEAKKLKEQEVEKIEKELDALKEQKDYMSKAEYKA
                     KKEALKEQKEKIKKEIKEYIDNL"
     gene            complement(18135..19505)
                     /gene="pgmL"
                     /locus_tag="ROE18_000069"
     CDS             complement(18135..19505)
                     /gene="pgmL"
                     /locus_tag="ROE18_000069"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase PgmL"
                     /protein_id="HDX3650295.1"
                     /translation="MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVS
                     VGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSH
                     NPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILSLYVKFMCE
                     QFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAKPDGQFPNHAPDPTEEE
                     NLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTYVFCGDELCYLFAKNIPNPRILGE
                     VKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDG
                     IYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGAL
                     KGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESTVFSLFNEI
                     KARLKN"
     gene            19627..20163
                     /gene="fliL"
                     /locus_tag="ROE18_000070"
     CDS             19627..20163
                     /gene="fliL"
                     /locus_tag="ROE18_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HDX3650296.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            20163..20510
                     /locus_tag="ROE18_000071"
     CDS             20163..20510
                     /locus_tag="ROE18_000071"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HDX3650297.1"
                     /translation="MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLA
                     GLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSIS
                     HDNGFAIAIVAIV"
     gene            complement(20511..20930)
                     /locus_tag="ROE18_000072"
     CDS             complement(20511..20930)
                     /locus_tag="ROE18_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650298.1"
                     /translation="MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFIISRNLDKQTIGK"
     gene            complement(20927..22288)
                     /locus_tag="ROE18_000073"
     CDS             complement(20927..22288)
                     /locus_tag="ROE18_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HDX3650299.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMS
                     SKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQVLS
                     DIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSL
                     TWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFF
                     AREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPF
                     GVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSK
                     RKL"
     gene            complement(22285..23406)
                     /locus_tag="ROE18_000074"
     CDS             complement(22285..23406)
                     /locus_tag="ROE18_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HDX3650300.1"
                     /translation="MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSYAFNIKADLSKIE
                     KNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIK
                     FGKESIYQLITGYYPFFYVLFSLLFSLVLAFESFAFLQNYMHFSLAIIIGCFLGFLLN
                     HFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYE
                     LVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKL
                     EFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKI
                     KRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI"
     gene            complement(23478..24662)
                     /gene="kpsS"
                     /locus_tag="ROE18_000075"
     CDS             complement(23478..24662)
                     /gene="kpsS"
                     /locus_tag="ROE18_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HDX3650301.1"
                     /translation="MRFSTKIKKEFSGKNILLLQGPVGNFFHHLAVKMRKNQTKVFKL
                     NFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKIDAILMYNDCRIIHAKAIKVAKE
                     LGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
                     MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIY
                     NLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRG
                     YKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTK
                     VCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFL
                     DK"
     gene            complement(24659..26728)
                     /locus_tag="ROE18_000076"
     CDS             complement(24659..26728)
                     /locus_tag="ROE18_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HDX3650302.1"
                     /translation="MKHYSISKKLIANVRNFYTISLYKKNSKINKDDLFLGWGRKKSG
                     LKAINLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATAPSKLENLL
                     NTYEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDASL
                     EFGLAKGFKTVDMIKDAIKENPKSKIYIKIHPDVLSGKKQSDLDINSLPKECILITEN
                     FNPVALLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKR
                     SLEEVFYVAYILYAEYFNPYLNQKSNIFDTIQTLAKYKDIEKANSNRLFFFGFSKWKR
                     KFVKPFFIAKNNEIIFLDFLDCLKNIQLKENDKFFIWGKRIDYNALKTTLIKKAQDEN
                     LLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFD
                     ENMLNRAKNIIKILLENRFSKYNGLKHEDLKINAKIGQKIILIPAQVEDDASMILGGF
                     GLSTLDLLKEVRAKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSA
                     IKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRTRKLSLEELV
                     AGALIAYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRF
                     YEFLAKK"
     gene            complement(26725..27237)
                     /locus_tag="ROE18_000077"
     CDS             complement(26725..27237)
                     /locus_tag="ROE18_000077"
                     /EC_number="2.7.1.224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine diphosphoramidate kinase"
                     /protein_id="HDX3650303.1"
                     /translation="MINSPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDEL
                     REILGHYAYDRQGRIDMALKRAKFAKFLNDQGMMVIVTTISMFNEIYDYNRKQLKNYY
                     EIYIECDMHELIQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVINNSCRNNLEEK
                     VELIIKKLAL"
     gene            complement(27227..27988)
                     /locus_tag="ROE18_000078"
     CDS             complement(27227..27988)
                     /locus_tag="ROE18_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP:phosphoglutamine cytidylyltransferase"
                     /protein_id="HDX3650304.1"
                     /translation="MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSA
                     GINEIAVVGGYLNEVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFILKCIEEKQ
                     DLIISYADIVYFQDCVQKLINAKEELAIVVDKSWRKLWSKRFANPLEDAETLKMTNGY
                     IIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYGMLDRDILYDNKNFENMYMTSF
                     LQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIDK"
     gene            complement(27990..28592)
                     /locus_tag="ROE18_000079"
     CDS             complement(27990..28592)
                     /locus_tag="ROE18_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HDX3650305.1"
                     /translation="MFIGITQRLICNDSYHEERECLALDWGKLFNKDLFKNFTPLPLS
                     YEIDFSYYKHLIKAVILSGGNDLSFYSPNVLSKKRDLYEKQVIEICLEEKIPLLGICR
                     GAQMIAHYFNSHISPCENHIGKHEIFFSKEKFISNSFHNFAIEKLGEDLVELCLAKDN
                     TIEAFKHKYENIFGIMWHIERENGLNNIQILKEWFSLIKE"
     gene            complement(28583..30922)
                     /locus_tag="ROE18_000080"
     CDS             complement(28583..30922)
                     /locus_tag="ROE18_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650306.1"
                     /translation="MAELNFKTKAQNLKNLQTKLKKAKVLPLVLTSLEELISNEDKVL
                     QDIQTLKANRLIIRSSSLSEDSMKNSNAGAFLSLANIKADSKDELLKALYEVANSMPS
                     KSDEILVQPMLENITLCGVGFSVDKDNFSPYFCLQYDENGSNSSITDGSSKSAKTYYH
                     YRNYLEFKDIRLQKIIELIKELEVLYDCHFLDVEFAFAIQDDKEELFCLQVRPLVMHE
                     KNNLFHSLPKEALYRFYKRFESLKESRSRVLGDKAIFGVMPDWNPAEIIGLRPKRLAF
                     SLYKEIITDNIWAYQRDNYGYRDLRSHPLIHSFLGIPYVDVRLSFNSFIPKKLDENIA
                     QKLVNFYLDKLNKNHELHDKIEFNIVYSCYDFNSSKKLEELLNHGFNENEIKRLEFSL
                     LELTNKIINPRSGLYLKDIQKAYKLKERYDGIINSNFSLIDKIYWLIEECKRYGTLPF
                     AGVARAAFVAMQLLNSLVEIDFITKEEKDDFLNSLNTVSKNLSKQTNHLNFHNKDQFL
                     KDFGHLRAGTYNILSPRYDEDFELYFDVDQKDSKVYLQDKAFVFSKEKTKALNALLRE
                     HGLEINACEFFDFLKQAIEGRELVKFEFTRLLSKAIVYIEELGKYYGIEKEDLAHLDI
                     KSILNLYSSLYSINPKEQFVEEINRNKKEYELTQAIKLPSLLCNADEIFSFYNHSIIP
                     NFITQKSITAFTAKENDKDLEGKIVLIYAADPGYDYLFTKNIAGLITCYGGANSHMAI
                     RASELGMPAVIGVGEENFEKYLKAKKINIECESEQIFCL"
     gene            complement(30937..31698)
                     /locus_tag="ROE18_000081"
     CDS             complement(30937..31698)
                     /locus_tag="ROE18_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HDX3650307.1"
                     /translation="MQKLVEQVWDYTKHAKFYSYRPNYAPKTIDMLISLVGKKDIKVA
                     DIGAGTGNLSIMLLERGCKVVSVEPNDAMREIGIERTKDQKIDWVRATGLNSTLQNSE
                     FDWVTFGSSFNVMDRNEALEEAHRLLKSEGYFSCMWNHRDLNDPVQKIAEDTIVEFVP
                     NYTRGTRREDQRPIIESRKDLFDNIVYIEEDFYFHQSIENYINAWKSVKNPYWDLETD
                     EGSELFNKISNKISQRLPKEFSIKYTTRCWSAKKI"
     gene            complement(31751..32524)
                     /locus_tag="ROE18_000082"
     CDS             complement(31751..32524)
                     /locus_tag="ROE18_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDX3650308.1"
                     /translation="MKQGDFTKVAKHYHNRPAYSPFLLEKLVACINDKNKNLKDLNIV
                     EVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQKFTQNLSNISWHKGSGEETCMSN
                     NQADWVIMASSFHWTDPKKSLPEFNRILTGGGYFTAIWNPRHIVEGSVFDEIEKEIKH
                     IVPDLARVSSGTQNVKKWEEILVSTGDFIDCFFMECDYKEFWDKERYLGAWHSVNDIQ
                     AQAGEKRWKEILEMIEAKISHMQSIEIPYKIRAWTARKA"
     gene            complement(32591..>32770)
                     /locus_tag="ROE18_000083"
     CDS             complement(32591..>32770)
                     /locus_tag="ROE18_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HDX3650309.1"
                     /translation="FKEKDVLNYLKENKELRVKLKNILDKELVHIKQHRPDIVASWKY
                     YQEFEQMCKELNGNI"
BASE COUNT        11241 a         5619 c         4463 g        11447 t
ORIGIN      
        1 tttttccatt attttgaaaa gaaaccttat cataaacata ggagctaaat aaaatttgcg
       61 catcaaaaca aatgccataa agataaattc ttaaaagtct taaaagatcg acattcttag
      121 atattttagt attaaaaatc aagctttttc ttttttgaaa gtaaaaagcg tatgtattaa
      181 gcttgatatt tatattttga atcttaccaa atgaaacatg cattatatta tgcaaaaaat
      241 ttccaaatat catttttaaa ctcttggtat tttttgcata taaaagagga atttttagag
      301 cactatcaac gctcgcatta tattgagtta aaaaagtcaa cataagctct tgattgttta
      361 aatagcgata aatttgcggt ataaattctt gcttatcatc aaatccaaat aacatcttta
      421 acctttatag caagaaaatt ctttattaag attaaaaatt ttacaatatt cacaatacac
      481 acaacttaca cttctttttg cacaaactaa tggaatttta cgctttttag cttcattttt
      541 gatttttttc atagtattat gatttaaaaa gcttgttaac attactatac attctgtatc
      601 acaaggaatc ggcttgcgat taactctatt ttcattacgt gcatcccagt gttctatttt
      661 tttagcacct aaatcatgta aaacagctct aataggagtg atttcatctg caccaataac
      721 caaaactgac ataaattctc ctttgtgatt tttaaaatat attttgataa ttattattat
      781 aatataaaaa aactaaattt attttgaaat ttattatcaa taaaatgcaa ttattcagtt
      841 aattttaatt tttaatagat ataatttact aattaataaa atttattatt taggagaaaa
      901 caatgaaaaa attgactaac gattttggaa acattatagc tgataaccaa aattcattaa
      961 gcgcaggcgc aaaaggacct ttacttatgc aagattatct tttgcttgaa aaacttgctc
     1021 atcaaaatag agaaagaatt ccagaaagaa ccgttcatgc taagggaagt ggagcttatg
     1081 gcgaaataaa aattacagca gacttaagtg cttataccaa agctaaaatt tttcaaaaag
     1141 gcgaagttac tccattattt ttacgctttt caacagtagc aggtgaagca ggtgcagcag
     1201 atgctgaacg cgatgtgaga ggttttgcta ttaaatttta cactaaagaa ggaaactggg
     1261 acttggtagg aaataacact ccgacattct tcatccgcga tgcttataaa ttccctgatt
     1321 tcatccatac tcaaaaaaga gatccaagaa ctcatctaag aagtaataat gctgcttggg
     1381 atttttggag tttatgtcct gaaagtttac atcaagtaac cattcttatg agcgatagag
     1441 gaattcctgc aagttatcgt catatgcatg gatttggaag ccatacttat agttttatta
     1501 atgataaaaa tgaaagattt tgggtgaaat tccattttaa aacccaacaa gggattaaaa
     1561 atcttaccaa ccaagaagct gccgagctta tagcaaaaga tagagaaagt catcaaagag
     1621 atctctataa tgctatagaa aataaagatt ttccaaaatg gaaagttcaa gttcaaattc
     1681 ttgctgaaaa agatatagaa aaacttggat ttaatccttt tgatttaaca aaaatttggc
     1741 ctcatagttt tgtacctttg atggatatag gcgaaatgat tctaaacaaa aatcctcaaa
     1801 attattttaa tgaagttgaa caagctgcct ttagtccaag caatatcgtt cctggaattg
     1861 gctttagccc tgataaaatg ttgcaagcta gaattttttc atatcctgat gcacaaagat
     1921 atagaatagg aactaattat catcttttac cagtaaatcg tgcaaaaagc gaagtgaata
     1981 cttacaatgt cgctggtgct atgaattttg atagttataa aaatgatgct gcttattatg
     2041 aaccaaacag ctatgataat agcccaaaag aagacaaaag ctatcttgaa cctgatttag
     2101 tcttagaagg cgtagcacaa agatatgctc cactagataa tgacttttat actcaaccaa
     2161 gagctttatt taatcttatg aatgatgatc aaaaaactca actttttcat aatatcgccg
     2221 cttctatgga aggagttgat gaaaaaatta tcactagagc tttaaaacat tttgaaaaaa
     2281 tttcacctga ttatgcaaaa ggaattaaaa aagctttaga aaaataattt ttacttgcca
     2341 cttttggtgg caaactaaag attataataa ttaaggaaaa acaatgacaa ctcttagttt
     2401 agaagaagaa aaaagatttg aagagctttg taaaatggct tttaattttg caagaaataa
     2461 tgaatatgaa aatcttaaaa tcatgataga agcaggttta aatgtaaatt taaaaactca
     2521 taaaggcgat agcttgctta tgcttgcagc ttataataat tcttatgaaa gcgctaaaat
     2581 gcttttagaa aaaggtgcaa aagtagatga aaaaaacgat cgtggacaaa ccccattagc
     2641 gggagtttgt tttaaaggat acttacctat gtgtgaactt ttagttaaat atggagcaaa
     2701 tattgacgaa aacaatggtt taggaatgac accttatacc tttgctatta tgtttggacg
     2761 caaagatgtg gcagaatttt tactcaaaaa atctaaaaat aattttttaa agaaaatgag
     2821 cctaaaaata ctaaaattta tcaaaaaatt ttagttattt tttaaatttc ttcagatacc
     2881 tataaacact aggttctgaa atttttaaaa attttgctac gataggaacc gctcctttta
     2941 tattaaaaat acctttttca tatagctttt cagcaatttc ttctttttga gcaatgctta
     3001 attgataatc agaatttaaa taactagaat ctacactttg aactaaaata tcctctatcg
     3061 agtgacttaa tgtttctatg cttgaatcat tttgagaaaa actaatattt cctaaaatat
     3121 cacccatatc tccaattttt tctaaatcaa tcatcttgca tattaaatct ctcataatgc
     3181 tagtatcatg attgatacac aaaataccta ctaatttgtc atgattttta ataaaaaaag
     3241 tagatcctct aattaatttt gattttccaa caagagcctt ataatcacat aaaaaatctt
     3301 tttctaaata ttttttattt tgcataagct cacttgcaaa agcagtcaag ggagaatcta
     3361 aacttctccc actaatgtga ttgttagcaa ttgccgcaat ataggcccca tcttcagtaa
     3421 ttacatgaaa aactatctca tattgctcac ctaaaacttc tcctaaaaaa tatgtcaact
     3481 ttataaattg ttgtttttgt ccctcatcca taaaactgcc ttcaataaaa aattaatata
     3541 atattaaatt ctactcttta tactttaaaa catttcttaa aaataaaatt ttattattat
     3601 gataataaac tattgacaaa ttattattgt agtgataaaa tgcattctgc ttaatctata
     3661 tttaacaaag gagaattcat gtcaaactat ccaaaggcca ttggtccata ctcagcttac
     3721 agagaagtaa atggactttt atttatatca ggacaacttc ctatcaaccc tgcttcagga
     3781 gaaatagaaa gctctgatat caaagaacaa accaaacaat ctttaaaaaa tatcggtgct
     3841 atcttagaag aaaatggtat cagttatgat aaagtgatta aaaccacttg ctttttagct
     3901 gatattaatg attttgtagc attcaatgaa atttatgctg aattttttaa agctccttat
     3961 ccagcaagaa gtgcttttgc ggtaaaagat ctaccaaaaa aagctaaagt agagatagag
     4021 atcatcgctc aaaaaggata aaacatgcta ggtattgttt tttctttatt tagtgttttt
     4081 ttgcttgttt ttatgcttta taaaaaaatc aatgctcaca tggcattgct tttaagtggt
     4141 ttacttttac tttccttagc tgctcttttt ggactttctc cacatattgt cgctaaaggt
     4201 tctttaaatt taggtttttt tgatattttt caagttttca atcaaaccat gtcaagtaca
     4261 ttagtagggc ttggacttac acttatgact atagcaggtt tttctgctta tatggatcat
     4321 gtaggggctt cttatgcact ttttaaagtt tttgaaaaac ctttaaaagc cgtaaaatct
     4381 ccttatgttt tactcatagt tgcttatttt atcgtgcaac ttttagttct tttcatccct
     4441 tctcacgcag gcttggcact tttacttatg gttactatgt atcctatact tgtacttctg
     4501 gtgtttcaaa actttctgcc ttaagtgtga ttgcgatttg tcaatatatc gatcatggac
     4561 ctggaagtgg aaatgtgatc atggcatcaa aagtagctga agttgatcct gcaatttatt
     4621 ttgttcatta tcaactccct acaaccttgc ctatcattat agctgtaggt attgcgatat
     4681 atctttgcaa taaatttttt gacaaaaaag ataattttgc cttcaatgca caagaaattg
     4741 aaaaagaact aaatgaaaat gaaggtaaag aaaaagaact taaaaagcct cctagaattt
     4801 atgcgatttt acctataatt cctttggttt taatcctagg atttagttcc gtgcttgata
     4861 gcatcttggt tttaatggga ataagtagtg cccaagaagt taaagcagct gctagcactg
     4921 caattaaaat gaatgttcca gtaagcaatg gtgatttcaa cttttgtggc tattattttt
     4981 gaaatgatac gctataaaag cgttgtagaa actcttaatt ctattatgat tttctttaaa
     5041 ggaatgggac atttatttgt tatcacagtt tcactcatcg tttgcggtca agtatttgca
     5101 agtggtcttt tatctgtagg ttttgtagat actttaatag aattttgcaa aaatgcagga
     5161 tttggagttt tggctattat tatcgccgtt tcaatcttgc ttgcggtttg tgctttctta
     5221 atgggttcag gaaatgcggc attttttagc tttgctccac ttatcccaaa tatagcaaaa
     5281 cactttggag ttgaaactat caccatgata gcaccaattc aaatcatgac gggctttgga
     5341 agatgtgtta gtcctattgc accagcgatc ttagctatct cagctattgc aaaagtaagt
     5401 ccttttgccg tagttaaaag aacagctatt cctatgcttg tagcggctat tgtaaatgtt
     5461 attatgactt atatttatct ttaaaaagga gaaaaaatga actcaaaaac taaacttatt
     5521 cattgtggca gaggcgatca aggtgctgaa gtaagatcag tcaatcctac acttatgcgt
     5581 gcatcaacca tactttttaa agatcacgca acttggaaaa atacagagaa ttaagaaaaa
     5641 cagatcgtgt tttaagctat ggagctagag gaacaacaac caattttgaa cttgaaaaac
     5701 ttatttgcac tctagagggt ggttatagag cacaactttt tccaacagga cttgcagcat
     5761 tagccatggt acttttaaac tatgcaagca aagatgcaca ttttttaatc actgatgcaa
     5821 tttatgggcc tgtaagaacg atttgcgaat tatttttaga caaaataggc gttgaaattg
     5881 attttttaaa agctgatgca agtgatatag aagaaaaaat caaacctaat accaagctta
     5941 tcctatgcga aagtccaggt tctatacttt atgaaatcat agatttacca aaactttgca
     6001 aaattgctca tgcatataat atccctgtag ctattgacaa tacttattct agtggatatt
     6061 ttctaaatcc tttagaactt ggagtagaca tttcagttat cgccgctaca aaatatctta
     6121 gtggacactc tgatgtaacc atgggtatag tagtaatcaa cgaaaaagaa tggaaaaatt
     6181 ttgacaaact tccagaagct ttaggcttta caacaagtcc tgatgatgct tacttagtac
     6241 ttcgtggtat gagaacacta gatgtaagaa tgaaagctca tgaaaaaagt gctgatgaaa
     6301 ttgtagagtt tttacaaagc agaaaagaaa ttaaaacaat tttctatcca aaactcaaat
     6361 cccacccaaa tcatgaaatt ttcatgcgtg atcataaagg tgcaaatggt atgattacca
     6421 tagaatttgc agaaggttat aacaaagatg atgctattaa atttgtagat aaactagaat
     6481 acttttcaat tggtgctagc tggggtggat atgaaagctt agccaccgta actactccgc
     6541 ctagaactgc aacagaccta agtgcaagag gactatttgt aagatttcat ataggtcttg
     6601 aagatactaa agatttaatt gctgatttaa cacaagcttt tgatagtatt aaaaaataag
     6661 gagataagat gacaggaatt agcgtatttg atcatagatt actagcagac tcatggagca
     6721 cgcaggaaat gcgtgctatt ttttgtgaac aaaaccgcat acaaaaatgg ctcgatgttg
     6781 aagcagcttt agcaaaagca caagcaaaac ttaaaattat ccctaaaaaa gcagctgatg
     6841 agatcgcaaa aaaagctcat tataaattta tggatatgga ctttatcttt gctgaattta
     6901 aaaagaccaa acacccttta gttcctactg taagaggatt agaaaaagct tgcgataata
     6961 atttaggcga atatgtacat tttagagtaa ccactcaaga tatcatcgat acaggactgg
     7021 ttttacaatt taaagaagca atgactcttg taaaaagcga attaaaagct atcgcaaaag
     7081 ccttagcgaa actagctaaa acccataaaa acactgctat gatgggaaga actcttgctt
     7141 tacaagcttt accgatcacc tttgggcata aggtagccat ctggcttagc gagcttgatc
     7201 gtcattttga aagaatactt gaacttgaaa aaagacttta tgtaggcagc atagtaggag
     7261 ctgttggaac caaggcgagt ttaagcgatg aatgcaacga agtagaaaag ctaactttag
     7321 agaatttagg acttgaagtg cctaatatct cttggcagag cacacgtgat cgctttatag
     7381 agcttggttt tgtactaggc aatatcaatg caacttttaa caaaatcgct catcaattac
     7441 tcatactctc acacaatgaa atcgatgaag tagcagaacc ttttggcaaa ggacaagtag
     7501 gatctagcac tatgccacac aaaagaaatc ctgcagtaag cgaaaatgca gttacagtaa
     7561 gcaatgcctt taaggcaaat ttagccattt taagcgatat tgaaagacac gagcatgaaa
     7621 gagatgggca agtttggaaa atggaatgga aacttttacc tgaaatgttt ttaatgcttt
     7681 ctgtggtttt agcaaatatg aaatttgctc ttagtgacct agaagttaaa aaagataaaa
     7741 tgcttaaaaa tcttgacact cttaaaggct ttgtactggc agaacgcgtt atgtttgcac
     7801 taagcgatca ttacggcaaa caacacgctc atgaaatcgt ttatgaaaac gctatgctag
     7861 gtatcgaaca acaaaaaact ttcaaagaag tattgcttgc agatacaaga gtatctcaag
     7921 tcttaaaaga aaaagatatc gatgctttac ttgatgcaac aagttatgta ggatatgcac
     7981 caaaacttgt agatgaattt ttggcaaaaa tcaaaaatag cgctatctta aaataggaaa
     8041 aatcatgttc tatagcgaaa ttttggcgga ttttattttc aatcttcagt atgaaaatat
     8101 ccctaataca gttgttcaaa gagctaaaga gcttatgctt gatagccttg gaacggctat
     8161 agcagcgagt aaggaagaat gcgttttaaa tgcctttaaa gcttttgaaa atttaagcac
     8221 agaaaaaaat acccctgtat gggtacatga taaaaaatta gatcccattt atgcagccat
     8281 gctaaatggc attgcttctc atgcacttga ttttgatgat acgcatacag aagctatttt
     8341 gcacgcaagt gcgattttaa ctcctctttg tttaagttat ggttttcatg ttagcaaaga
     8401 tgcgaaaaaa atcatcaaag cttttataat aggctgggaa attgcagcta gagtaggcat
     8461 tgcaagcaaa ggcacttttc ataagcgtgg ttttcatacc actgctattg caggaatttt
     8521 tggaagtgtg agtgcaagtg caatcttgct ggatcttaac aaagaacaaa tcatcaatgc
     8581 tttaggactt gctggaagtt ttgcaagtgg gattaatgag ttcttatcca atggctctaa
     8641 ttcaaaagtc ttacatatag caaatgccat taaaaatgga attttaatcg ctaactttgc
     8701 taaaaataac atgagtgaac ctctaagcat ttttaaaggt agggataata tctttaaatg
     8761 ttttggtata gaacaagaat gcgataaaac agaacttgat aaaggcttgg gtgaaattta
     8821 gcaaagtatg caagtttcta taaagcctta tccaagctgc cattttgctc atggtcttat
     8881 tgattgtgcc atagctttaa aaaatgatgg cttaaaagca gatgaaatca aaagcattcg
     8941 ttgttttgta gatgaagttc ctatttcttt tatttgcgat cctttagaag caaaatacac
     9001 tccaaacagt gcttatgagg ccaaattttc catgcctttt ttaatggctc taggattctt
     9061 tgatggtaaa atcactcttg aatcttatga aaatttaaag cgtgaagaag tactagaatt
     9121 tgctaaaaaa atcagttaca aaaaaaggaa atctcaaggc tttccaaaat attttccagg
     9181 gcatttagaa gccagtttgc aagatggacg cataatccaa aaagatgttt ttatcaataa
     9241 aggtaatttt gataatccac taagttttga agaattaaaa gctaaatttt tagccaatgc
     9301 acaaatttac cttgataata ctaaagctaa caaaattcta gatcaaatca tcaatctaga
     9361 aaatttaaac cacttttctt tttaaatatt tatccttctt tttaagaagg ataatttcat
     9421 tacacttttt tattataata tttattatta atttaggaat tacaatgact ttaaacgagt
     9481 taaaagatgg acaaaaggct attattgtca atttaaacgc tcacaaagaa ctcaaaaata
     9541 gacttttaag ctttggattt attaaaaata aaaacttgaa aaaaattcac tcctctttaa
     9601 aaaatgccac cataatggta gaacttgata caagttgtgt tatcctaaga tctgatgaag
     9661 ctaaaaccat agaagtgaat cttatatgaa aaaaatcaaa atagctcttg taggtcagcc
     9721 taatgtaggc aaaagtcttc ttattaatgc actttgcaaa gccaatatga aagtaggaaa
     9781 ttttagcgga gttactatag aaaaagcaag cgcaaaaact ttttataaaa actatgaatt
     9841 tgaagtcatt gatttgccag gaacttattc tttagatgga tatagcgaag aagaaaaaat
     9901 cacacgtcat tttttaaatc aaaatgacta tgatgttatt gttaatgttt tagatgctac
     9961 caatttagaa cgcaatctta tccttagtgc agaactttta agccttaata aaaaaatgct
    10021 tttagcttta aatatgtgcg atgaagccaa aaaagaaggt atagagcttg acacttctat
    10081 tttaagccaa gaatttcaaa gtcaagttgt tgaaatttca gcaaaaacaa aagaaaattt
    10141 agaacttttg ctgcaaaaaa ttattatttt atttgaaagt aaatttattc caagatctca
    10201 attttacact ccgctttgcg aaaaaagtcc ggaaaaagaa gatttattat attttattaa
    10261 tgaactttca aaaaaaatta ttacacacaa aaaagaagaa agaaatttaa ccaaaaaaat
    10321 cgatgcctta cttatccata aattctttgg cttacctata tttttatttt taatgtggct
    10381 tttatttcaa ctcaccttta gcttagggca aattcctatg gattatatag aatcgggctt
    10441 taatacctta ggtgaatttg ttaaaaacaa tatttctaat acctttatcg cttcagcttt
    10501 ggctgatggg attatcgcag gtgttggtgc tgtgatactt tttttgccta atataatgat
    10561 tttattttta ggcatagctc ttttagaaac cacaggctat atgtcaagag tagctttttt
    10621 acttgatggg attttacata aatttggttt gcatggtaaa agttttattc cgctaatcac
    10681 tggttttggt tgttcggtac ctgcttttat ggctacacgc actcttaaga acaaaagaga
    10741 taggctttta actctttttg tgatcaattt tatgagttgt ggggcaagac ttcctgtata
    10801 tgtgcttttt atcggtgctt tttttccaag tgaaaaagca ggaaattatc tttttggaat
    10861 ttatatttta ggtgcgattt taggactttg tgctgcaaaa tttttaagaa tgacagcatt
    10921 tcgtggactt gatgaacctt ttgttatgga aatgccaaaa tatcgtatgc caaattggca
    10981 tttagtttgg tttatggttt ataataaagc caaaatgtat cttaaaaaag caggaacttt
    11041 catacttttg gcctctttgc tcatatggtt tgctagcaat tttccaaaaa gtgaagaaaa
    11101 tttaaatgat tttaatgctc aagaaagagc tatagaacaa agttatttag gacaatttgg
    11161 caaaggcata gaacctattt ttcaacccct tgagttagat tggaaattaa gcgtatcttt
    11221 aatcagtggt ttggctgcta aagaagtgat gatctcaact atgggcgtgc tttattcact
    11281 aggaaaagat gtagatgaaa caaataatga tttaaaagga attatcgcta aaaacatacc
    11341 tataccaagt gcagtggctt ttattttatt tgtaatgatt tataatccct gctttgcagc
    11401 aactatagtt ttttcaaaag aaagtggaaa gctaaaatat actctctttc tctttctttt
    11461 tacctgcaca agtgcttata tagtagcttt tatagggctt catattgcta aaattttatt
    11521 aaattaactt gcttttaatg atgaaatttt agtgatatta tccccaaaag tttttaaaat
    11581 actataagca ataccttcaa aatcaagccc accgcaaaga tagatcaaag tcatacgaaa
    11641 agatttactc acatcaagct ttggtttttc agcgttcata tttaacttaa aatcataagg
    11701 acttgcatgt ttaaaagcat aattttttgc cgcaattaaa aaatcattct tatcttttaa
    11761 aaactctcct ttaactaaaa taaagcttat ttcaagatat ttccaaaaat cttttgaagg
    11821 cataggattt tcatcaaaat tttgctctat aaaagtatag tttttttcaa aggatttttt
    11881 ataattttct acaagcaaag cacctaattt atttttagct atattttgta aaataagttt
    11941 tatattgctt tcaaattcaa aatctatttg ttctaaaatt ttaatttgct cttctagaaa
    12001 aaattcttgt tttaactctt cattacaaag tttagcgtaa gaaaaaatat ttgccatagg
    12061 cttttcataa ttcccaaact catcccaaaa atttttctca ctacaggcta tacaaccatg
    12121 tcctgcggcc actggccaag aagttttagc attgaatttc actttaggac agttattgta
    12181 agtataaggt cctttacaac ctatcttaaa taaacaagct ccattctttg cagcctcatc
    12241 gtcaaaatgt tcagcaaaaa tcccactttc aaattttgcc tttctttcac acatatcatg
    12301 caggcattta ccataagccc aaacaggacg attttgctca tcaagttcag gtaaaactcc
    12361 aaataaagca aaaaaactta aagtcgcaat gatatttata tcacttggag gacaacctgg
    12421 gatatttact actttctgac ttaaaacttc actaatacca caagttttac taggatttgg
    12481 ataagcagcc tgaataccac cataacttga acaagtaccc actgcaaaga tagccttggc
    12541 tttagcggct agtttttcta aaatttcata gccactctct ccttgtgctc ctatagtaag
    12601 aaaaaaggta tcaatggctg caataccacc ttcaaccgct aaaataaaat cttcttctaa
    12661 aacatgctct aaaagctctt cagctttagt gccatttgct gccattaaag tttcatgata
    12721 ttctaaagaa aaaaaatcaa aaataagctc atcaaaactt ggcaactcag aacgcaacaa
    12781 actctcacta caccctgtac attcacaaag atgaagccat actaactttg tcttaggtgc
    12841 gatttgaaaa aatctttgag caagagctgg aatttcattg cctaaagata aatgcctagc
    12901 aagaattttt acactttctt cattaataac cttatcctct tttaaagtag aattttcaag
    12961 ttttttaatg cgatcttcaa gtatattttt taattcttca ttgctaagct ttgccatttt
    13021 ttatcctttt tgattatccc aacaaagaac agtttgccct tcttcatttt tttcaacatc
    13081 acccataccc atgatgttat atcctgcatc gacataatgt atttcacctg taacaccatt
    13141 tgccaaatcg ctaagtaaat acatagccga atttcctaca tcttctatac taacattgcg
    13201 ttttaaagga gaattgattt cattgtattt taaaatcatt ctaaaatccc ctattccact
    13261 tgctgccaaa gttttaatag gacctgctga aatagcatta acacggattc cttttacccc
    13321 taaatctctt gccaaataac gcacagaact ttcaagtgca gcttttgcta cacccataac
    13381 attataatga ggcacatatt taacccctcc aagataactt aaagtcaaaa tcgaaccctt
    13441 atcttttaaa ataggtaaaa ctgcacgcgt taaagaaagt aaagaataca cagaagtttg
    13501 catagctata tcaaaagctt cttttgaagt ttctaaaaaa gaattttcta aagcttcttt
    13561 tggagcaaaa gcaaccgcat gcactacaaa atcaatctcg cctaaatctt ttttgatttt
    13621 ttcagcgata gaatctaaat gctcgttatt atttacatca agctcataaa caaaattaga
    13681 attaaactct tgtgctatag gttctacgcg tttttttaaa gcatcattta aaaaagtaaa
    13741 agcaagctcg gctccttgat caaaacatgc ttttgctatg ccataagcaa tagatttatt
    13801 atttgcaacc cctacaataa ggcctttttt acccttcata atcatctttt atcctttgat
    13861 taattttata aaattttcta cttttaaagc tgcagagcct atcaaaactc caccacaatg
    13921 atttacactt aaaatttctt tgatattatt ttcattcaca cttccaccat aaagcaaagg
    13981 tactttggtt aaactcgcta aaaattcaag cactttagcg atatctgtac tttgtgcgct
    14041 cactcccgtt cctatagaat aaataggctc ataagcgatg atgagttttt cataatttaa
    14101 atcaataatt tcaagttgtt tttttaaaaa ctctaaagtc ttgcctgaat tttttgtatc
    14161 taaattttca cctatacaaa aaacaatttt ataaccatgc tctttagcaa aatcaaattt
    14221 agccttaata aattcttcat ctcctaaagc tcttctttca gaatgcccga ttaagacaca
    14281 tttaatccca aattcgtcca aatgttcttt tccaagctcg cctgtaaaag caccattaac
    14341 acaaggataa aaattttgcg ctccttgtat gaagttattt tcattttcta aaaatgctat
    14401 actaggtgga aaaacgataa tatcatcgca ttttaccccc atagttttat ttaaaatttt
    14461 agcataaatt ttaaagcttg ctcttgtgtg attgcatttt aaatttgcag caaagatcat
    14521 tcattttcct tagatcttaa agcttttaca cctggaagtt ctttgccttc tataagttca
    14581 agagaagcac cacctccagt agaaataaaa gtcatttcat ctgcatcacc tgcacgcgca
    14641 accacatcag ccgtatcacc gcctccaaca acagaagttg catgtccttc gctgatataa
    14701 tgactcattt taatgctacc ttttgaaaat ttatcaattt caaaaacacc cataggtcca
    14761 ttccaccaaa tcgtttgcgc atcagaaatc acctccttaa aaagtctcac actcgcaggt
    14821 cctatatcta aacccatcca accatttgga atttcttgcg ctggaacaaa tttcatcggc
    14881 gcatcttgtg agcacgcagg agcggctaca acatctactg gaagataaat tttcactcct
    14941 aaatttttac ccttggtaag aattttatta gcttcttcta aaagttcttc ttctaaaagt
    15001 gaatttccta tatcataacc taaagctttt aaaaaagtaa atgccatacc tccgcctatg
    15061 attaatttat ctacctttgg taataaattt gtcaatgctt gaagttttcc acttaccttt
    15121 gaacctccaa caacagcgac aaaaggacgt gctggatgtt tgataagatt gcttgcaaaa
    15181 tcaatttctt tttggagtaa aaatcctgcg cctttgtgtt tttcatcaaa aaatttagta
    15241 atcgcctcta cactagaatg tgctctatgg catactccaa aagcatcatt gatataaact
    15301 tgaaccatag aagcaagttc tttggctaaa ttttcatcat ttttagtttc gcctttttca
    15361 aaacgcaaat tttcaagaag taaaatttca cccgctttta aattcatagc tttggttttt
    15421 gcatcttcgc cgataacatc ttttgccata acaatttctt tatctaaaag tctagcaaga
    15481 cgcttagcca caggttctaa agaatattta gagctaattt cttttggacg ccctaaatga
    15541 gaggctaaaa tcacactaca accattatcc aaacaatatc ttatcgtagg aatagctgat
    15601 cttatgcgtc tatcatcagt gatatttaaa aaatcatctt gaggaacatt aaaatcacat
    15661 cttataaaaa cttttttctt agctaaatca atgtctttta tagaaataat atcactcatg
    15721 attaagcctt atttgcaata tatactgcca tatctactag acgacttgaa tagccccatt
    15781 cattatcata ccaagcaatt accttgataa aatcatccgc aatcacttga gttaaatcac
    15841 ttgctacaat agctccataa gaacaagtga taaaatcgct tgaaactctt tcatcatcat
    15901 ctaccattaa aatgcctttt aaatttgtag ctgcagcttt tctgaaagct tcattgattt
    15961 catctttgct aactttacgg cttagttgtg cagttaaatc cacgcttgat acatcaatca
    16021 ctggcacacg catactttgt ccatgaagct tgccattaag ttcaggcata acaagtttca
    16081 tagcttttgc tgcgcctgta gaagttggaa tgatattttg cgctgcagca cgagaacggc
    16141 gtttatcttt agctttagca tcaataatac tttgtccatt tgtataagca tgtattgttg
    16201 tcataagtcc tttttctatg ccaaaattat cttgtaaaac acgacaaaca ggacctaaac
    16261 aatttgttgt acaacttgca ttagaaataa tgctttcacc cttgtaaagt tctgaattta
    16321 ctcctaaaac ataagtagga gtatcatctt ttgcaggagc actcatgatc actttttgta
    16381 ctcccatatc tataaattct tgacattttg ccatagttaa atgcgctcct gtgcactcta
    16441 aaacaatttg tgcgccgtgt tttgcaaagt caagatcttt tacattgcga cttttaaata
    16501 ctttgatttt tttaccattt accactaaat catcgccttc actatcaaca ctgcctttaa
    16561 attcaccatg tactgtatcg tatttaaaaa ggtattttgt aagttcaata tccgtagtat
    16621 catttatcgc cacaagctca atatcatttc tttctaagat gattcttgca acacatctgc
    16681 ctatgcgtcc aaaaccattt atagcaactt ttacagccat ttaatttcct tttgcaaaat
    16741 ataatgctaa tattctacaa aaaaaaggtt aaaattttaa tgaagatagc actttttggt
    16801 ggcagttttg atccaccaca taatggacac aatagcgtta ttttagaggc tttggaaaaa
    16861 ttagatattg ataagcttat tattatgcct acttatatca acccttttaa acaaaacttt
    16921 agtgctgatg aaaagcaaag attcttatgg gttaaaaaac tttggggaca ttttccaaaa
    16981 gttgaaattt gtgattttga aaccaagcaa aaacgccctg ttcctagcat agaaagtgtt
    17041 aagtatcttt ataagcttta taatcctagt aaattttatc ttttaatcgg cgcagatcat
    17101 ttagaaaaac ttcatctttg gcatgatttt gaaaaactta attctttagt agaatttgtt
    17161 attgctaatc gcaatgatat agaaattcct aagaatttta aagatttaaa aaccgataaa
    17221 aaaatcgctt cttctttcat acgcaacact ttaaatacaa atgaagtttg cgaagaaatt
    17281 aaagatgaag taaaaaaata ttatgaaaaa ttacaaaaaa attgatacaa tttcaaaaat
    17341 taaaggacaa taatgcaaga aagaatagat ttaatcgtta aaattttaga tgaaaaaaaa
    17401 gctgaagata tcaaaaccat tgacatgagc gagcaagaat actttgtaaa atatgtcatt
    17461 atcgcagcta ctttaggaga aagacacgct ctatccttga tcgatgagct taaaacacaa
    17521 cttaaagcca aaggtgagga atttttaaac atagatagta gcgaagaatg gagtgtgatt
    17581 gatcttggtg atattttaat ccatctttta acaccagaac acagaggaat ttataatata
    17641 gaagaattac tagaaaatct taaaaaaggt agggtttaaa aaggctaaat ttaattagcc
    17701 ttttaatttt tagagattat caatatattc tttaatttct tttttgattt tctctttttg
    17761 ttcttttaaa gcttcttttt tagctttata ctcagcctta ctcatataat ctttttgttc
    17821 ttttaaagca tcaagttctt tttcgatttt ttctacttct tgttctttaa gttttttagc
    17881 ttctaacttt ttatcataaa acataggatc tttagcacaa tcattttgta cttgttttaa
    17941 agcaagctct aagcttaaag ttctagctgt atcattatgc gctttagaaa aactgatttc
    18001 tttattgata cgatcaattt ttctatcaca ttcacttgcg ccaaaagcaa acgcacataa
    18061 caaaagtaga acaagtattt ttttcatttt taattccttt ttaaaataaa tttaaatcgc
    18121 gaaatattat ctcatcaatt cttaagccta gcttttatct cattaaacaa actaaatacc
    18181 gtactttcaa gctcttttgc tctttctaaa gaagttgctt caaagcgtgt gataagataa
    18241 gggctggtgt tagatgcacg aagcaaagcc catccatcgc caaaatctat cctagctcca
    18301 tcaatttcac aaagactttt aacacctttt aaagctcctt tttcaatctc tttttgaaat
    18361 tcttccacaa gtttaaattt ttcttcttca tttacaggaa ttttaatttc aggtgtagta
    18421 taaagttttg gtaaagcttt aatcatactt tctaaatcaa aacctttata aacaagttct
    18481 aaggctctta aaaatgcgta aattccatca tcataaccaa aatatctatg tttaaagaaa
    18541 atatgtccac tcacttcagc agctaaatca atatcttttt ctttcatcat ttttttgata
    18601 ttagaatgtc ctgtttttcc cataaaaata gttccaaatt tagccacttc atcaaaaaga
    18661 tttttagaac attttacctc acctaaaatg cgtggattag gaatattttt agcaaacaaa
    18721 taacaaagct catctccaca aaatacataa gttttactca aagcaaccat tctatcagca
    18781 tccccatcaa aagcaaaagc taaagaataa tcttgatttt gatttaaaaa ctctctaatc
    18841 gcacttaagt tttcttcttc tgtaggatct ggagcatggt ttggaaactg tccatcaggc
    18901 tttgcaaaca ttacatgagc ttttaaattt aaagccttga ttaaaggctt tatcaccact
    18961 ccagccgcac catttgtgca atcaacacca aatttataat taaaatcctt taaaaaacta
    19021 aattgctcgc acataaattt cacataaagg cttaaaatat cgtatttttc tacttctaaa
    19081 ttttcttcaa tatcatcatc taaatgctta taaacttctt ttgaaaactc ttttaattcc
    19141 acgccaaaaa aactttcttt attgatagtg attttaaaac cattataatc ttttgggtta
    19201 tgagagcctg ttatcataac atttgcatca aatttcaagc cctcataaag actaaaatat
    19261 cccaatggag ttggtacaag ccctatatca tagattttta ttcccgcttt gttaagtcca
    19321 ctcactagat aattaaaaag ttcatttgca ctatatcttg catcatagcc cacacttaca
    19381 tttttacagc ctttatttag catggtttgt cccaagcaaa aacctatagc cttaacactt
    19441 ttttcattta attctttgcc ataaagccct cttatatcat attctctaaa aatcacatct
    19501 aacatttttt tccttcaaat tcatctcttc tttgacctaa atttatcgtt tttctaaagc
    19561 aaatttggat agaaaagaaa tttttgctac aattttacat taatttcact aaatgaagga
    19621 aaatttatgg atgaagaatt agaaaacgaa gaaacgaaaa agaaaaaagg tggttcactt
    19681 gtaattatta ttgttatttt actttttgtt ttacttctta gtattatggg agtgattgct
    19741 tggcttattt caagcagttc aagtgatgaa agcgaagtca aagaagctcc aaaagaagaa
    19801 gcaaaagccg ataaacctaa agtttcagct cctactcaac gaggtagtga ttttgctaat
    19861 ataggtccta tgtatccact tgatcctttt accctaaatc tacttagcga tagtggctca
    19921 agatatgtaa aatgcactat agaactagaa caaaatagcg aacttttaaa acctgaactt
    19981 gataaaaaag tcccggtgat tcgtgatatt attattcgta cattaacagc taaaactttt
    20041 gaagaagtaa gtacacaaaa aggcaaagaa cgtttaaaag atgagctagt tggaaaaatc
    20101 aatgaaattt taaccgatgg ctttattaaa aatgtttatt ttacggattt tgtagtttct
    20161 taatgcgtgt aggctgtgat atcatcgcca tttctaggat agaaaaaatt cattctagac
    20221 atggcaaaaa ttttttggat aaatttctaa gcccaaaaga acaaatactc attaaaaatc
    20281 cagcaactct agcaggtctt tgggctgcta aagaagccgc tagcaaggct ttaggtgttg
    20341 gaatttgtga attatgcagt ttttttgata ttgaaatatc aaaagatgaa aaaaacgcac
    20401 ctaaattaaa atattctcaa aaaattacaa aagattttaa tatcactcaa acttccctaa
    20461 gcatttctca tgataatggt tttgctatag ccatagtggc tatagtttga ttattttcct
    20521 atagtttgct tgtctaaatt tcttgaaatt atgaaatcta ccacaggttg ttctctttta
    20581 tttgctcttt tacaatgatc tttttgaaaa aaatctgtga tttttataac aatccttgcc
    20641 cattttttac gatttctttc acgccacgca tgagaagaaa cgctctccca agcatagcca
    20701 ttaaacaagc ttgcatttac aaaatgatct aaggctctaa caccctgtct tgctcgtgcg
    20761 gtattaaaaa aagttcctat aatcacgata aaaagatatc ctaaaactgc taaaggtact
    20821 attgcacaaa gcaaaatagt acctgctaat ttttctttta agcttccttt taaggtgcgt
    20881 tttacacgac gacgaaaatt ggcgcgaatt ttagttctaa ctcttttcat agctttcttt
    20941 tgctaaattt tatcctcata ccattagccg aacgcactgt taaacgccct actacatcag
    21001 gtacaaaacc ttcttcaagt tctagtttgt aagtttttaa aatattagcc aaaatcaaaa
    21061 tcgcttcttg catagcaaaa ccttgtccta tacaaattct ttcccctacc ccaaaaggca
    21121 aataagcatc ttttttgtac tctccttcaa aacgagaagg attaaatcca tgcggatttg
    21181 tccaaaattc ttcatgtctg tgtatcagcc aaggagcaat caccacccca gaaccttttt
    21241 taataagctt atctctaact tgggtatctt tttttgcctc tcttgcaaaa aaaccaacag
    21301 gaggataaag tcttaaagat tctttaaaaa tatttgttaa gtatttaaac tgtcttagat
    21361 gcgaaatttc aatggctcca ccctgtaaaa cctgagtaat ctcctcgtaa gctttttctt
    21421 gctccttagg ataaagactg agcaaataaa gcgtccatgt caaagaactt gctgtggttt
    21481 catgtcctgc taaaaaaagc atagccactt gatctaaaat ttcctcaaaa gaaaaacgct
    21541 tatttgtatc agcatccact actaaaagca aagatcctaa aatatcttca aattctgcat
    21601 tatctgccat atcatatctt ggttttatga tatcacttaa aacctgtctg atcacatctc
    21661 cggctttagc acgcttacga tctcctaaca cataagaaag ccattttgga aaacgaaaca
    21721 tacgacgcat ggctgtatgc acgctttgct cttgaaaagt cacaaatgcg tttaagattt
    21781 ttttaccttt ttcctcatcg agttttgaag acataatggt gcgaaaaatc acatcagcgg
    21841 taataaaagt catagcttca tctacttcga taacagcatg atttggatac ttgctaaaac
    21901 gatccatcat atctgccaca gcttcactca taagattaaa cactttattg atacgagtca
    21961 tttcaaaact tggacgcaaa agctctcttt gttttttcca aacttcacca tttgtagtaa
    22021 aaatactctc ccctaaaagc ggacttaaaa gctcatgtaa aaatgcactt ttaggaaatt
    22081 ctctaacctc atcaaccatc attcttttaa cttctttagt gtcatttatg acataaagat
    22141 caaaatttgg catcttcaca tagcctgttt gcattttata actacgctca taaagcccgt
    22201 caagccaaga tctacgcttt aacaaaaaag ttaaaagcgt agaagcttta tttttataag
    22261 gttttggaaa aaaggggcat tcactcatat ttttaccttt tcttctaaaa atttaggcat
    22321 tatgatgaaa gaaaaaaaat cataatcacc tttaacacta atactataaa gatataaaaa
    22381 gtgcgctttg tttttatctc tttttatttt tttatactca tgtttttcat ataaagtgtg
    22441 aaatttagca cttaaaaatg ggggtgtaaa tttagcattt acgccactcg tgcggaaaaa
    22501 atccacttga ggaaaacatg ctccatcaat aatcgatgta taatcatacc attttaaatc
    22561 aaaccttgaa acaaattcaa gcttctttct aaattcatcc gctttttttt gataactcac
    22621 taaaggaatg cattctccta gagtaagaat ttttaactta tgaagtaaag ataaatctaa
    22681 attttgtctt aaaatacact ccaaaacttc tatacaaact atagttccaa cactatgtgc
    22741 tactaaaaca agttcataat cttgtttatt ttcattttgt tttagcttat ctactatggt
    22801 attcgcaaaa agcttgattc tttcttgcat agtgcctgtt tttttatctt gccaagtagc
    22861 acaaaaagca caaattcttg ctatccaaaa tacagctaat ttcttaccta atttaaataa
    22921 aaaatgattt agtaaaaatc ctaaaaaaca tcctatgatg atagctaaag aaaaatgcat
    22981 ataattttgc aaaaaagcaa aactttcaaa agccaaaacc aaagaaaata gtaaagaaaa
    23041 taacacataa aaaaaaggat aataacctgt gataagttga taaatcgact ctttaccaaa
    23101 tttaataaaa agccctgtga tagtataaat tctaaaaaaa ctataacaat ctgccaaagc
    23161 atctttataa ttttctgacc aatttttctt aacaatatca ttccatgtta aaaaatgata
    23221 tttagtttgc actccttcgc aagaaatttg aaaaaaagga aattgttcat ttttttcaat
    23281 tttacttaaa tcagctttaa tgttaaaagc ataagaataa tcttttaggt tttttttaaa
    23341 taaatcataa taaaatctat aacttttagg atcatatcct gctatataaa atacttccct
    23401 atccatacaa tatttctttt tgcttttaat tataacaact ttgctttaaa agctctctta
    23461 atcaaagttt tttagtctta tttgtctaaa aagaaatttt tataaaaatt gccgttgaat
    23521 tgattagttt gtaaaagata ttttttaaaa ttacatacca aaacaggatt gggtttataa
    23581 gcatgagctt cacgccaaaa aaattgaagt ttttttggat aagataagcc ttcaaaatca
    23641 taaaaagcat tgccacaaac cttagtcgga cagccttcta aaatagcact aagacctact
    23701 gttgaattta tagtaataca acccaaagcc tttcttaaaa gaactggcaa gtgggtatca
    23761 tgaacatata aaacccttcc ttctacatga tatttttgac ttaaatcatt tatgagttta
    23821 gaataattct tatagcccct atccatggga tggtgtttaa aaactagata agatttagct
    23881 cttgcatggt ttgcaaaaga aagtatggtt tcctctataa agtgctctat gctttttttg
    23941 taatgatatt taatttgcgt atcgctataa acttgtaaaa tcgccaaaaa gtactttttt
    24001 tctaaattat aaatcttttc atttagtttt ttttctgtaa tcttataaag atactttcta
    24061 tacaatgatc taaaccaaaa taaaaattca aaaggatata aagtgcgatg atgaagtttg
    24121 ttgttaaaaa atggagccaa aataaaagca aacaaccaat acaaaaaagc atcaaaagcc
    24181 ataaatttaa atccacctgg aatttctttt atgctttctt tggtaaaaat attttgagaa
    24241 agataaaaat ttttatcacg cggtaaagaa gaatttgcat tcaccccatc tttttccaaa
    24301 gtaatacaat aaggccttaa atatccttct tcaaaaatcc atatttcaat tcctaattct
    24361 ttagccactt taatagcctt agcatgtata atgcgacaat cattatacat taaaatagca
    24421 tcgatttttt tattttgaaa aaaatctcta tagaaatttt caagatcttt ttcatcacac
    24481 ttacacctcg ttccgctagg atagaaaaaa aaatctccgc cgttaaaatt gagtttaaaa
    24541 actttggttt ggttttttct cattttcact gcaagatgat gaaaaaaatt tcccacaggc
    24601 ccttgcaaga gtaaaatatt tttaccgcta aattcttttt taattttagt gctaaatctc
    24661 atttctttgc taaaaattca taaaatcttc ttatttttct aagcataaaa gttttaaaat
    24721 ctattgccaa ttttatatat ttttttgaaa aataagcttt ttgtaaattt agcattatat
    24781 ctaaacaaac ttcaatttca cataaagttt ttgttttagg atttatatat cttggatatg
    24841 ctatcaaagc acctgctaca agctcttcta ggcttagttt tcttgttctt ctttcgcatc
    24901 tatatttatc ttttgttaaa ccccagcccg cataaaaagg cataccataa gtaaaaactt
    24961 ttttagctct taaaagagca tcaaaaccac ttgtagaagt aatagtgtga atttcatcag
    25021 caatttttat agcactatcg atactgcaat cttttacaat ctcatcacaa aattccaaga
    25081 tgagtgtttc atcttttaaa cctacacggt tgccacttaa cacatcagga tgaggcttaa
    25141 agatgatata agcatcttga tttttagcac gcacctcctt aagcaaatca agagtagata
    25201 agccaaaacc ccctaaaatc atcgaagcat catcttcaac ttgagcaggg attaaaataa
    25261 tcttttgtcc tattttggca ttgattttta agtcttcatg ctttaagcca ttgtattttg
    25321 aaaagcggtt ctcaagtaag atttttataa tattttttgc cctatttagc atattttcat
    25381 caaaaatttc gttttgcaaa agctcttcta atttacttgc tttatttgga tctatgtaaa
    25441 gtcctttatc atcaacaatt aaagaaaaag ggcgtgtaag atcagaacct aaagagattg
    25501 agcgaataaa tccatcttca actaaagaaa ttttgggagt aaaatggagc aaattctcat
    25561 cttgcgcttt ttttataaga gtagttttaa gagcgttata atctatcctt ttaccccaaa
    25621 tgaaaaattt atcattttct tttaattgta tattctttaa acaatctaag aaatctagaa
    25681 atatgatttc attgttttta gctataaaaa aaggttttac aaatttcctt ttccattttg
    25741 aaaatccaaa gaaaaaaagt ctattagaat ttgccttttc tatatcttta tattttgcta
    25801 aagtttgaat agtatcaaaa atattacttt tttgatttaa ataaggatta aaatactcag
    25861 cataaagtat ataagcaaca tagaaaactt cttctaaact tcttttttgc atccttcttt
    25921 tacactctaa tttatctttt gttagacccc aacctgcata aaaaggcata ccataacaaa
    25981 tacattcaca ttcttgcatc aaagcttcaa aacccatacc agaagttttg gtataaacct
    26041 tatcaaaaaa ctcaagcaag gctacgggat taaaattttc agtaattaaa atacattctt
    26101 taggtaagga atttatatct aaatcacttt gttttttacc gcttaaaaca tcgggatgga
    26161 tttttatata aattttagat ttaggatttt cttttatggc atcttttatc atatcgacgg
    26221 ttttaaaacc tttagcaagc ccaaattcaa gtgaggcatc attggccgtt tgggtgatga
    26281 ttaaaaccct tttttcatct ttttgaaaat aatcatctgg aatatcaaga ttgttattat
    26341 acttgctaat tttatatttt ttgataagct ctatagcttt tttagcttgc ttgatttctt
    26401 catctttaaa ttcataagta tttaaaagat tttcaagctt tgaaggtgct gttgcatcat
    26461 aataaatgcc tatatcatct ttaaccatag aaaaacttgg gctattttca acccctaagt
    26521 ttaatgagcg gataaatcca tcttctaaaa gtatgaattt agccttatat tttttagcta
    26581 aatttatagc ttttaaacct gattttttgc gtccccagcc aaggaaaaga tcatctttat
    26641 ttatttttga atttttctta tacaaagaaa tggtgtaaaa atttctaaca ttagcaataa
    26701 gtttttttga tattgagtaa tgcttcacaa tgccaatttc tttattataa gttcaacttt
    26761 ttcttctaaa ttatttcgac aagaattatt gatcactaaa tcagcctctg gtttatcaaa
    26821 ttctatatca acaccaacta cattatcaat ttctttattt aaagccttag tataaagccc
    26881 tttttgatct ctttgtatta attcatgcat atcgcattct atataaattt cataataatt
    26941 ttttaattgc tttctattgt aatcataaat ctcattaaac attgaaatcg tagtgacaat
    27001 aaccatcata ccttgatcgt ttaaaaattt tgcaaattta gctcttttca aagccatatc
    27061 tatgcgacct tgtctatcgt atgcataatg tcctaatatt tctcttaact catctccatc
    27121 tagataaata aggtttttat attttagttt taatttctca tacaaagctt gacctatagt
    27181 tgtttttcca cttccagcta aaccagtaag ccaaataata taaggactat ttatcaattt
    27241 gcacctctaa atcactcata aaatcaattt cacaccaatt gccatcaatt tccactgctt
    27301 ttgcgttgtt gtatttttca attaaagctt gcaaaaaact tgtcatgtac atattttcaa
    27361 aatttttatt atcatataaa atatctcgat caagcattcc ataaaaagca ataacttcgg
    27421 aaagaaattg ataagaaaat ttaaaaagtc ctatatattg agcttctatc tcatcatagg
    27481 cattagcttt ttttccaagt tctataatat aaccatttgt catctttaat gtttcagcat
    27541 cttctaaagg atttgcaaag cgtttgctcc aaagcttacg ccaggactta tcaactacta
    27601 tagcaagttc ttctttggca tttataagct tttgcacgca atcttgaaaa taaacaatat
    27661 ccgcatagga aataatcaaa tcttgttttt cttcgatgca ttttaatata aaatctttag
    27721 cgcaaaaaaa agtatgaacc atattggttt tatcatattt tgaattaata aaaaaatgct
    27781 cgatatcata tttattaaga taatttttta gcacttcgtt taaatatcca cccacaacag
    27841 ctatttcatt tatacctgct gattttaaag cttcgatttc ataatctatg atttttttat
    27901 tcttatactc aaccatacac tttggttgat cttttgttaa aggcatcagc cttgatccaa
    27961 aacctgctgc taagataatt gcattcatat tattccttga ttaaactaaa ccactctttt
    28021 aaaatttgaa tattattaag tccattttct ctttcaatat gccacattat accaaaaata
    28081 ttttcatact tatgtttaaa agcttctata gtattatctt ttgctaagca aagttctaca
    28141 agatcttcgc ctaatttttc aatagcaaaa ttatgaaaag aattacttat aaatttttct
    28201 tttgagaaaa atatttcatg tttgcctata tgattttcac aaggacttat atggctgtta
    28261 aaataatgag ctatcatctg agcccctctg caaattccta aaagtggtat tttttcttct
    28321 aaacaaattt ctataacttg cttttcatat aaatctctct ttttggataa aacattagga
    28381 ctataaaaac ttaaatcatt gccaccgctt aatatcacag cttttattag atgtttataa
    28441 taagaaaaat ctatttcata gctaagagga agaggagtaa aatttttaaa taaatcttta
    28501 ttaaataatt ttccccaatc caaagccaaa cattctcttt cttcatgata actatcgttg
    28561 caaataagcc tttgagtaat acctataaac aaaatatttg ctcactttca cattctatat
    28621 ttattttttt agcttttaaa tatttttcaa aattttcttc tccaactcct ataacagcag
    28681 gcattccaag ttctgaggca cgaatggcca tatgcgaatt agcaccccca taacatgtaa
    28741 taagtcctgc tatatttttt gtaaataaat aatcatatcc gggatctgcc gcataaatta
    28801 aaacaatctt tccttctaaa tctttatcat tttcctttgc cgtaaatgca gtaatactct
    28861 tttgtgtaat gaaatttgga ataatgctat gattataaaa agaaaaaatt tcatcggcat
    28921 tgcaaagcaa agaaggaagt tttatagctt gtgtaagttc atattctttt ttattgcgat
    28981 taatttcttc tacaaactgc tcttttggat ttatagaata aagactagaa taaagattta
    29041 aaatgctttt tatatcaaga tgagccaaat cttctttttc aatgccataa tatttgccta
    29101 attcttctat ataaactata gctttagaaa gcaatctagt gaattcaaat ttaacgagct
    29161 ctctaccctc gatagcctgt tttaaaaaat caaaaaattc acaagcatta atctctaatc
    29221 catgctctct aagtaaagca tttaaagctt ttgtcttttc ttttgaaaaa acaaaagctt
    29281 tatcttgtaa ataaacttta ctatcttttt gatccacatc aaaataaagt tcaaaatctt
    29341 catcatatct tggagataaa atattataag ttcctgctct taaatgtcca aaatctttca
    29401 aaaattgatc tttgttgtga aaattaagat ggtttgtttg tttgcttaaa tttttgctca
    29461 ctgtattgag tgaatttaaa aaatcatctt tttcctcttt ggttataaaa tcaatctcaa
    29521 ctaaagaatt taaaagttgc attgctacaa atgcagccct agccaccccc gcaaaaggca
    29581 aggttccata acgcttgcat tcttcaataa gccaataaat tttatcaatt aaagaaaaat
    29641 tagaattaat aatgccatca tatctttctt ttagcttata agctttttgt atatctttta
    29701 aataaagccc tgatctagga ttaataatct tatttgtaag ttctaataat gaaaattcta
    29761 atcttttgat ttcattttca ttaaaaccat gatttaaaag ttcttctaat tttttagaac
    29821 tattaaagtc ataacaagaa taaacaatat taaattcaat cttatcgtgc aattcatgat
    29881 ttttattaag cttatctaag taaaaattga caagtttttg tgcgatattt tcatctaatt
    29941 tttttggtat aaaagaatta aaagataatc ttacatccac ataaggaatg cctaaaaaag
    30001 aatggattaa aggatgggat cttagatctc tataaccata attatctctt tgatacgccc
    30061 agatattatc cgtaatgatt tctttatata aactaaaagc taaacgctta ggtcttaacc
    30121 ctatgatttc agctggattc caatcaggca ttaccccaaa aatggcttta tctcccaaaa
    30181 ctctagatct tgattctttt aaagactcaa aacgtttata aaatctatat aaagcttctt
    30241 ttggtaaaga atgaaataaa ttattttttt catgcataac caaaggacgc acttgtaagc
    30301 aaaaaagttc ttccttatca tcttgaatag caaatgcaaa ttcaacatct aaaaaatgac
    30361 aatcatataa aacttctaat tcttttataa gttctataat tttttgaagt ctaatatctt
    30421 taaattctaa ataatttctg taatgatagt aagtttttgc actcttactg cttccatctg
    30481 taatagagct atttgaacca ttttcatcat attgaagaca aaaataaggg gaaaaattat
    30541 ctttatcaac actaaaacca actccacaaa gagtaatgtt ttcaagcata ggttgaacta
    30601 aaatttcatc gctttttgat ggcatagaat tggcaacttc atataaagct tttaataact
    30661 catctttaga atcagcttta atatttgcca aagaaagaaa agcacctgca ttggagtttt
    30721 tcatactatc ttcacttaaa gaagaacttc ttataatgag tctattagcc tttaaggttt
    30781 gaatgtcctg taaaacttta tcttcatttg atattaattc ttcaagcgaa gttaaaacca
    30841 aaggtagaac ttttgctttt tttaattttg tttgtaaatt ttttaaattt tgtgctttgg
    30901 ttttaaaatt taactccgcc atgtttttcc ttagttttat atttttttag cactccaaca
    30961 acgagtggta tattttatgc taaattcctt aggaagtctt tgtgaaattt tattactaat
    31021 tttattaaaa agttcacttc cttcatcagt ctccaaatcc cagtaaggat ttttaacact
    31081 tttccatgca ttaatataat tttcaatgct ttgatgaaaa taaaaatcct cttcaatata
    31141 aacaatatta tcaaaaagat cctttcgact ctctataatt ggtctttgat cttctcttct
    31201 tgttcccctt gtataatttg gtacaaattc tacaatagta tcttcagcta ttttttgcac
    31261 aggatcgttt aaatccctgt gattccacat acaagaaaaa tatccctctg attttaataa
    31321 gcgatgcgct tcctctaagg cttcatttct atccattaca ttaaaactac taccaaaagt
    31381 cacccaatca aattcactat tttggagtgt tgagtttaag cctgttgctc taacccagtc
    31441 aatcttttga tccttggttc tttctatccc gatctcacgc atcgcatcat ttggttctac
    31501 agatactacc ttacatcctc tttctaaaag cataatactt aaatttccag ttcctgcacc
    31561 gatatcagcg actttaatat ctttttttcc aactaagcta ataagcatat ctatagtttt
    31621 tggagcataa tttggtctat agctataaaa tttagcatgc ttggtataat cccacacttg
    31681 ttctactagt ttttgcattt tatttccttt ttttcatctt tgacaagctt gatgaaaaaa
    31741 aggaggtatt ttatgctttt ctagctgtcc atgctcttat tttataagga atctctatac
    31801 tttgcatatg agaaatttta gcttctatca tctctaaaat ttccttccat cttttttcac
    31861 ctgcttgtgc ttgtatatca tttacagaat gccaagctcc aagataacgc tctttatccc
    31921 aaaactcttt atagtcacac tccataaaaa agcagtctat gaaatctcct gttgaaacaa
    31981 gaatttcttc ccatttttta acattttgag tgccactgct tacacgagca agatctggaa
    32041 caatatgttt aatctccttt tcaatttcat caaaaaccga accctctaca atgtggcgag
    32101 gattccaaat cgcagtaaaa tacccccccc ctgtcaatat acgattaaat tctgggagag
    32161 attttttagg atctgtccaa tggaaagaac tagccatgat gacccaatca gcttgattat
    32221 tgctcatgca ggtttcttcg ccactccctt tatgccaaga aatatttgat aaattttgtg
    32281 taaatttttg cccttcttca cgcatattat cgtttggttc cacagcacta atttggcatc
    32341 caaacatttc tcccaacatc ttagtaagtt ttccagttcc agctcctact tcaacaatat
    32401 ttaaatcttt taaattttta tttttatcat tgatacaagc tacaagtttt tcaagtaaaa
    32461 acggactata agcaggtcta ttgtgataat gttttgcaac ttttgtaaaa tccccttgtt
    32521 tcatattgat tcctttctct aattttaaac acaattatat ctttttttta ttaatttaca
    32581 aatctttctc ctaaatatta ccattcaact ccttgcacat ttgttcaaat tcttgatagt
    32641 atttccaaga agctactata tctggacgat gttgtttaat atgaacaagt tctttatcta
    32701 atatgttttt taacttaact cttaattctt tattttcttt taaatagttt aacacgtctt
    32761 tttctttaaa
//
LOCUS       DAPOLW010000003        27597 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.003, whole genome shotgun sequence.
ACCESSION   DAPOLW010000003 DAPOLW010000000
VERSION     DAPOLW010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27597
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.003"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(14..2113)
                     /gene="copA"
                     /locus_tag="ROE18_000084"
     CDS             complement(14..2113)
                     /gene="copA"
                     /locus_tag="ROE18_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HDX3650310.1"
                     /translation="MEELRIKIGKMTCVNCSNAIERACKKIDGVKDASVSYVNSSGVF
                     LLEDQKKRKDIIAKIKNLGFEILEDEQSLNAYKAKKHLELRKNLLLSIVLSVIIMYFE
                     MFVKSSFSQNIQMALSFFGIFYCGRDFFSHAFLGFKSKNLDMNTLVALGTLSAFVYSF
                     LVYLQIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEISSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGAVVLNGALRIKANKKAMDSTLEQIKNLVFEAGSIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWVLKADLNTAFLHSCAVLLISCPCALGLATPIALVVASANAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKENLSIFKHNLSKDDFDKLCQIESLSSHPIAKALH
                     KDHFFDLKGEGRVIVGSGIKYKEDNDNYLVGNAQFLHENEIDTKESDIFFDTFKEYVR
                     VYFAKNKKCLGGVLLSNALKDGAKELVLNLKKQNLKTFILSGDHVKNVEKIAKELQID
                     EFHAQLKSEEKLQIIQKFKKTLFVGDGINDAAALSAASVSMSFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRGIIKLNLFWAFIYNVLCIPIAAGFIPFISLSPHIAALAM
                     CFSSITVVLNSLRLKRI"
     gene            complement(2113..2307)
                     /locus_tag="ROE18_000085"
     CDS             complement(2113..2307)
                     /locus_tag="ROE18_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal transport/detoxification protein"
                     /protein_id="HDX3650311.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLEQKILSLNLEEN
                     QVSNFTKEFQDLGFEIVERL"
     gene            complement(2297..3247)
                     /gene="czcD"
                     /locus_tag="ROE18_000086"
     CDS             complement(2297..3247)
                     /gene="czcD"
                     /locus_tag="ROE18_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HDX3650312.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSVDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIIGGIVVYFSDIVYIDTILAIVLSILLL
                     RWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCNLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSENEI"
     gene            complement(3323..3586)
                     /locus_tag="ROE18_000087"
     CDS             complement(3323..3586)
                     /locus_tag="ROE18_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HDX3650313.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQAPRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            complement(3656..4150)
                     /locus_tag="ROE18_000088"
     CDS             complement(3656..4150)
                     /locus_tag="ROE18_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HDX3650314.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIVLAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            complement(4147..4923)
                     /locus_tag="ROE18_000089"
     CDS             complement(4147..4923)
                     /locus_tag="ROE18_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HDX3650315.1"
                     /translation="MEKPDIQRLTNFLIVYTKTLLGAGTYTARVAKCVGRIAEVYGYE
                     ININFFFHHITLNVVDMDDNSIQRTYVIPNHHAHVNFKLIFDLSALSWAIYDHKYDLE
                     KVKVVFEQISQQKKHSYLLNLLFVSMANSAFCRLFGGDFGAGNLVFFATFVGLLLRYI
                     LTKAKIDLRIQYILCSFISSWFVFFGLDMGYTNTSDVALGSSILYLIPGVFFINSVID
                     ILKDHILMGLSRIISVAILICCIALGIYMTLSISDFGILR"
     gene            4990..5916
                     /locus_tag="ROE18_000090"
     CDS             4990..5916
                     /locus_tag="ROE18_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HDX3650316.1"
                     /translation="MAKIGIVGLGYVGAANAYSIVTQGICSELYLYDIKQDLALAHAR
                     DLEDMSAIHFSYTKIFHVPNLENLASCDIIILAFRKESLKELPSRLVELQNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKFLAKD
                     LNINSKDIFACMIGEHGDSQFAALSNASVLGQNLLDFYKQKLGKDLDIQELEKAVISE
                     GYFIYERKGRTEFGIGTSCVNLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKDGIEK
                     VFELKFNEKEKIKLENSKQQIKNAIQSVKDKI"
     gene            complement(5913..6515)
                     /locus_tag="ROE18_000091"
     CDS             complement(5913..6515)
                     /locus_tag="ROE18_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDX3650317.1"
                     /translation="MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGELDITLCILSGTLGSVLGALINYYICFFWGKNFVLKWGKYFGINEVKFAKFEE
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLVNFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(6596..6823)
                     /locus_tag="ROE18_000092"
     CDS             complement(6596..6823)
                     /locus_tag="ROE18_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650318.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(6834..8279)
                     /locus_tag="ROE18_000093"
     CDS             complement(6834..8279)
                     /locus_tag="ROE18_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HDX3650319.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAQI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVSGQD
                     YSANNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMGWSGTPYDLDAGRNTRSSGP
                     VIYVDRAYLDYYITPEWIATVGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPEGLQDHKVAIRAAYGKTYQWDEEGKVRDWMSDQKDADANLYYAAVEGELPIEGM
                     GDNLILFNIAYLSDFALPLNNGPIGLPSNGVTTILDDDGVVNLGDLTIANLHFENYKA
                     FGTNFNYFLSLGYSHGNNNQLSPVLSGILQKQGYGNGAFNEEDGYAVHVGGRYDFTKA
                     LKVGYEFFWGSRYWYTMSRPSINDPLNIRMTRGTAHDFYVIYQLDRYQFLRLSYTNIQ
                     NIWGNRGLPFGGAKKDKARADNIMLMYNVKF"
     gene            complement(8443..8925)
                     /locus_tag="ROE18_000094"
     CDS             complement(8443..8925)
                     /locus_tag="ROE18_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDX3650320.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGVGGPGYEIICECDDQEHKHECGALSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
     gene            complement(8935..9642)
                     /locus_tag="ROE18_000095"
     CDS             complement(8935..9642)
                     /locus_tag="ROE18_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDX3650321.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFTRKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIETKGLVLKKAGLEYMPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNID"
     gene            9751..10092
                     /locus_tag="ROE18_000096"
     CDS             9751..10092
                     /locus_tag="ROE18_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDX3650322.1"
                     /translation="MNIAKKELFVAWFFLIAAIVFEVLGTSFLKMENQVLGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIILSIVG
                     IIMINIGEVKE"
     gene            10092..10400
                     /locus_tag="ROE18_000097"
     CDS             10092..10400
                     /locus_tag="ROE18_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDX3650323.1"
                     /translation="MYIFIIVLSALLDIVANLLLKKSDGFKHKIWGLAAIVNAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(10418..12010)
                     /locus_tag="ROE18_000098"
     CDS             complement(10418..12010)
                     /locus_tag="ROE18_000098"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HDX3650324.1"
                     /translation="MKSIIFNEIKKILECDFALENPKDKNLAHFATPLAFSLAKELKK
                     SPMLIASDLASKFQNHDCFESVEAVNGYLNFRISKTFLNELANQALTNPNDFTKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLL
                     GLSILLSVKESILHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSEENIPSLADWAK
                     DKMLVLIKQNLEQAKIKIDSYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSQK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVNEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSL
                     VALSIKTAFSLMGIEAKNKMEH"
     gene            complement(12022..12261)
                     /locus_tag="ROE18_000099"
     CDS             complement(12022..12261)
                     /locus_tag="ROE18_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HDX3650325.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTNADASIDETKKA"
     gene            complement(12263..12886)
                     /gene="gmk"
                     /locus_tag="ROE18_000100"
     CDS             complement(12263..12886)
                     /gene="gmk"
                     /locus_tag="ROE18_000100"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDX3650326.1"
                     /translation="MKLQGFVLLISGPSGAGKSTLLKKLFDEFEDELYFSISSTTRKP
                     REGEKNGIHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSLKHTQNALDNGKIVVFD
                     IDVQGFKIARKKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKE
                     LSEYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            complement(12883..14202)
                     /locus_tag="ROE18_000101"
     CDS             complement(12883..14202)
                     /locus_tag="ROE18_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650327.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVEDIDAQILQKPFLPTDFLNLLNNKDANKH
                     TSIDLPMLSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDDAQDDNAN
                     KTLETQNLEHDNLEQETIKEQTQEDTQIDLDLTLEDGESEKEDLSQEHTALDTEPSLD
                     ELDDKNDEDLEDNKELQANISDFDDLPEVEEQEKEMDFDDLPEDAEFLGQAKYNEESE
                     ENLEEFAPVVEEDVQDEIDDFASNLSTQDQIKEELAQLDELDYGIDSDNSSKVLEDFK
                     DEPILDDKELGTNEEEVVVPNLNISDFDTLKESDIQEALGEEILEKNEEPIVSDVTKD
                     DNSEEIVNELSQSIAGAITSSIKDDTLKAALKGMNMNININISFKED"
     gene            complement(14259..15026)
                     /gene="fliR"
                     /locus_tag="ROE18_000102"
     CDS             complement(14259..15026)
                     /gene="fliR"
                     /locus_tag="ROE18_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HDX3650328.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGMMAGLMLQIIFAIIMMAGEQIAF
                     TMGFTMASILDPSSGTSMPITAQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFS"
     gene            complement(15013..15648)
                     /locus_tag="ROE18_000103"
     CDS             complement(15013..15648)
                     /locus_tag="ROE18_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDX3650329.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLTLNTKDCIAIQGSSGCGKSTL
                     LHILSSLLIPKKGEVFFKGSSLYQIDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQDLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDSKLASFCDKTYTINANGIC"
     gene            complement(15661..16734)
                     /locus_tag="ROE18_000104"
     CDS             complement(15661..16734)
                     /locus_tag="ROE18_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HDX3650330.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSTEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIIPGKMNSFIADNSQLDSKLTLMGQFYVMDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(16734..17525)
                     /gene="rpsB"
                     /locus_tag="ROE18_000105"
     CDS             complement(16734..17525)
                     /gene="rpsB"
                     /locus_tag="ROE18_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HDX3650331.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALANEEKEITDEEKKEVLDEAMSEEDFGEEQE"
     gene            complement(17641..18804)
                     /locus_tag="ROE18_000106"
     CDS             complement(17641..18804)
                     /locus_tag="ROE18_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDX3650332.1"
                     /translation="MLEKQMIKFILSKWNYGNFRIVFWDQEEFHVGNQPAKFSLIFKE
                     KIPFLKLFSDTSLVFAKHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNTEDILSKIAQ
                     KQESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLK
                     EGEKLLDIGCGWGWLSIMAAQKYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQ
                     NYQDLEFENYFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSILAMFEGKT
                     NAWIDKYIFPGGYLPSLREVVSAMSEWDFHLLLAESLRMHYAKTLDLWDENFNEVLDK
                     VREKYDEEFIRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSLTKDYIYK"
     gene            complement(18932..20056)
                     /locus_tag="ROE18_000107"
     CDS             complement(18932..20056)
                     /locus_tag="ROE18_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDX3650333.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDFAVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFAK
                     GDAKKGKEFFENNCFACHGVKEDGIAANITDSSMGVIPPDLSAAGAIFDEKFLAALIM
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQKAALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVILSIFAIGWKRSVWSKLH"
     gene            complement(20053..21303)
                     /locus_tag="ROE18_000108"
     CDS             complement(20053..21303)
                     /locus_tag="ROE18_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HDX3650334.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFVTGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIASIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWVGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            complement(21305..21808)
                     /gene="petA"
                     /locus_tag="ROE18_000109"
     CDS             complement(21305..21808)
                     /gene="petA"
                     /locus_tag="ROE18_000109"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HDX3650335.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGIFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            complement(21899..23184)
                     /locus_tag="ROE18_000110"
                     /pseudo
     CDS             complement(21899..23184)
                     /locus_tag="ROE18_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
     gene            complement(23185..25044)
                     /gene="mnmG"
                     /locus_tag="ROE18_000111"
     CDS             complement(23185..25044)
                     /gene="mnmG"
                     /locus_tag="ROE18_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HDX3650336.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     TRNKLLKLPNLEISQEQASVLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVN
                     PKAFSFRSRNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQIQMLRSVKGFENAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVVKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLG
                     LLSEQDFTYIQNIANNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDIEKLKKLDPIFETMDHYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPEN
                     FDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDILQIYIKMQKKKA"
     gene            complement(25132..25629)
                     /gene="cetB"
                     /locus_tag="ROE18_000112"
     CDS             complement(25132..25629)
                     /gene="cetB"
                     /locus_tag="ROE18_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HDX3650337.1"
                     /translation="MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDVNNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRAEQQQGLNKGVEMLKNFCKDADKTYNELIFS
                     LQEAK"
     gene            complement(25647..27026)
                     /gene="cetA"
                     /locus_tag="ROE18_000113"
     CDS             complement(25647..27026)
                     /gene="cetA"
                     /locus_tag="ROE18_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HDX3650338.1"
                     /translation="MVKNGLLLTIFLSVIGVLGVIFIHIFVGAIIFVLIAVLMIYLLR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLRE
                     INTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMD
                     LSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDV
                     VNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRL
                     EENSSALGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQD
                     ERAQGVINELSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQRS
                     AEILAKLKI"
     gene            complement(27147..>27597)
                     /gene="cetC"
                     /locus_tag="ROE18_000114"
     CDS             complement(27147..>27597)
                     /gene="cetC"
                     /locus_tag="ROE18_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HDX3650339.1"
                     /translation="TDLKGNIIYANNDFLKYAGYKVDELLYKSHNIVRHEDMPRTVFK
                     CLWDYIQKGDEIFAFVKNKSKDGNFYWVFANVSASFDANGDIVNYYSVRRAPNRKSLS
                     IIEEVYKILLEKEQKSGINAGVSALMDIVSSYKMTYNELIFNLQENN"
BASE COUNT         9514 a         5136 c         3458 g         9489 t
ORIGIN      
        1 aaaaattaaa tttttaaatt cttttaagtc ttaaagaatt aagcactaca gtaatagaac
       61 taaaacacat tgcaagtgct gctatatgag gacttaaaga gataaaaggt ataaatcctg
      121 ccgcgatagg aatgcaaagc acattataaa taaaagccca aaaaagattt agcttaataa
      181 taccgcgtgt ttttttagca agtttaaaac atttaaaaat cgctgataaa tcatctttta
      241 tcaagataaa atctcctgtt tttttagcaa gttcatttgc ctttgaaaaa ctcatactca
      301 cacttgcagc agataaagcc gccgcatcat tgatcccatc tcctacaaaa agagtttttt
      361 taaatttttg aatgatttgt agtttttctt cactcttaag ctgagcgtga aattcgtcta
      421 tttgtaattc tttggctatt ttttctacat tttttacatg atcgccgctt aaaataaaag
      481 ttttaagatt ttgctttttt aaatttaaca caagctcttt ggctccatct tttaaagcat
      541 tgcttaacaa aacaccgcct aaacactttt tattcttagc aaaatacacc ctaacatatt
      601 ctttaaaagt atcaaaaaag atatcacttt cttttgtgtc aatttcattt tcgtgcaaaa
      661 actgtgcatt gcctacgaga taattatcat tatcttcttt gtattttata ccagaaccca
      721 caatcactct tccctcaccc tttaaatcaa aaaaatgatc tttatgtaaa gccttagcta
      781 taggatgaga gcttaaactt tcaatttgac ataatttatc aaaatcatct ttagaaagat
      841 tgtgtttaaa aatactcaaa ttttcctttg ttaatgtacc cgttttatca aaaaaagcat
      901 acttaactaa ggctaatttt tctaaagcag caggattttt aataagaatg aaattttttg
      961 ccgcatttgc acttgccaca accaaagcta taggcgttgc aagacctaaa gcacaaggac
     1021 aagagatcaa aagcacagca caagagtgta aaaaagctgt atttaaatct gcttttagca
     1081 cccaaaaaac aaaaactaaa aaagcaaaaa atattatacc ccctacaaag tatttagaaa
     1141 tttgatctgc taaatttgcc aaaggacttt tgatacttcc tgcttcaaaa actagatttt
     1201 tgatttgttc taaagtacta tccatggcct ttttgtttgc tttgatcctt aaagcaccat
     1261 ttaaaactac tgctcctgct tgaacttcat cgccttcttt ttttaaaaca ggcaaaaact
     1321 ccccatttaa aaaactcata tcaagctctg cactccctaa aagcactact ccatctgcaa
     1381 caatgctttc tccttctttt accaaaagta catcgccact tttaacaaaa gaacttgaaa
     1441 tttctttgat actttcatct tcaagcaaaa tttttgtctt ttttgtgtct atattttcta
     1501 aaattctttg ataatcttgt gccttaaatt tagccttact ttcaagatat tttcctaaaa
     1561 gcacaaagga aataatcatc attgcaccac taaaatacaa atcttcttct ttaaaaattt
     1621 gcaaatacac caaaaaagaa tacacaaaag cactcaaagt ccccaaagct acaagggtat
     1681 tcatatctaa atttttgctt ttaaagccta aaaaagcatg agaaaaaaag tctctcccac
     1741 aataaaatat cccaaaaaaa ctcaaagcca tttggatatt ttgagaaaaa gaacttttaa
     1801 caaacatttc aaaatacata ataatcacac tcaaaactat acttaagagc aaattttttc
     1861 ttaattctaa gtgttttttt gccttgtatg cgttcaagct ttgttcatct tctaaaattt
     1921 caaagcctaa atttttaatt tttgcgatga tatccttgcg ttttttttga tcttcaagta
     1981 aaaaaacccc gctagaattc acataagaaa cactagcatc tttaacacca tcaatttttt
     2041 tacaagctct ttctatagca ttagaacaat taacgcaagt cattttgcct atttttatac
     2101 gcaattcttc cattataaac gctctacaat ctcaaaacct aaatcttgaa attcttttgt
     2161 aaaatttgat acttgatttt cttctaaatt taaacttaaa attttttgct ccaaatccac
     2221 ttctatattt ccaaattcat cttcaagaga atttttgatc aaatttacac aattcatgca
     2281 attaacattt tttactttaa atttcatttt cactccttat aggttgtatg gtaatatgcc
     2341 cgatttcaaa ttcatgcaac aacttatgag ataaatcctg agatagtttt tcaaattcct
     2401 ttagattgca aactcttact tttaaatgca tagaggctac tagcatttta ttagtgattt
     2461 gagtaatatg caaatccact acctcatcca cactaggatt taaaagcaaa acttgtctta
     2521 ctttttctat atccacagga gaactttcaa gcaagacatt agcactttgt ttaagcaaga
     2581 taatcgccca tcttaaaagc aagattgata atacaatagc taaaatcgta tctatataaa
     2641 caatatcact aaaatacacc acaatcccac ctataataac cgctaaagaa cccaataaat
     2701 cgctcatcat atgcaaaaaa gcggacttca tattgacatt ttctaaattt gcacccttaa
     2761 acatcatcaa agcattaatc ccatttacca aaaagcccaa aatagctaca attatcatgg
     2821 ttttagcgtc aatttctttt ggattgataa atttttctat agcctcataa atgataaata
     2881 aagccgataa aataatggtt aaagcattga taaaagccac taaaacttca agacgaaaat
     2941 acccaaaggt cttttgatga tcttgccatt tttctacagc tataatggct aaaaaactaa
     3001 gagctaaggc aaaaacatca gaaaacatat gcaaagtatc gcttaaaagt gccaaagaat
     3061 ttgaaaggat tgaataaata aattgcacaa gcatcataga aaaagtcatt aaaagagaaa
     3121 tttttaaaat ctttttatcc acactccttg catcggcatg ggaatgatga tgttcatgag
     3181 aatgttcttc gtgattatga tgacaagatt tgttagctaa aggctcgtgt gataaaaatt
     3241 tatacatctt atatcctttt ttgcttgaca ttttaagata ttaagctaaa aaggatataa
     3301 atatttgtta tttttataaa aattaaaagt caaaaagctc gcctagccaa ctttctttct
     3361 ttttcttttt ataatagtca ttgtgctgat gataagctga gtcattatat cttgactctt
     3421 gtcttggagc ttggttaaaa tttgctgtat tagggacact gcgttctatg attttgtcaa
     3481 gctctccacg atcaagccaa acgccacgac actttggaca ataatcaatc tcaactccac
     3541 tcctatcact cataaccaaa tctacattac aaactggaca taacatacaa tacctttttt
     3601 taaatttttg acttaaaatt ataaaaagaa atattaaaca aatttacaac aagttttaat
     3661 gtttttttgc atgtctagtc atcataaaac tttgttcaaa aaatataagc aaggtaacac
     3721 tcactcctat agctagagcc aaagtcacag aaacagttgt aaaaaaataa tcaaaaaatt
     3781 gaactaaaaa ttcagactta gccttcaaat catcactgcg tataaaagaa ataagataca
     3841 aaatcgcttt ataagcataa attccaggta tcataggaat aagagcaggg aaagcgataa
     3901 tttcagcagg agttttgatg atttttgcta aaacaattcc taaacatcct atgcaaaatg
     3961 aagcaacaaa agttgcaatt gctaaagttt gaaaatgaaa atattccacc aaggtaaaac
     4021 gaagtccatg tgcaattgcc gctaaaagag cagataaaat aagggttttt aaaggtggat
     4081 tacaagcata agcaaagcca aatcccgcca cagcagcaaa aaacatatct cttaaaataa
     4141 attcaatcat cttaaaatcc caaaatccga aatactaagc gtcatgtaaa ttccaagtgc
     4201 tatacaacaa atcaaaatag ccacgctgat aatacggcta agccccatta aaatatgatc
     4261 ttttaatata tcaatcacag aatttataaa aaatacccct ggtataagat acaagatact
     4321 agaacccaaa gccacatcag aagtattggt atatcccata tccagtccaa aaaatacaaa
     4381 ccatgatgag ataaaagaac aaaggatgta ttgaattctt aaatcaatct ttgctttagt
     4441 taaaatatat cttaataaca atcccacaaa agttgcaaaa aatactaaat ttccagcacc
     4501 aaaatcacca ccaaaaagcc tgcaaaaagc cgaatttgcc atagaaacaa ataaaagatt
     4561 aagcaaataa gaatgctttt tttgttgaga aatttgctca aaaacaactt ttactttttc
     4621 aagatcgtat ttgtgatcat atatagccca gcttaaagca cttaaatcaa aaataagctt
     4681 aaaattaaca tgggcatgat gattaggtat aacataagtt ctttgaatgg agttatcatc
     4741 catatccaca acatttaaag taatatgatg aaaaaagaaa ttgatattta tctcatagcc
     4801 ataaacctca gctattcttc ctacgcattt tgccacccta gctgtataag ttccagcacc
     4861 tagtaaagtt ttagtatata cgattaaaaa attagttaat ctttgtatat caggtttttc
     4921 catattttaa taatctttga ttgaatttgt tataattata gcaaatttta aaataaataa
     4981 ggagaaaaaa tggcaaaaat cggtatagtt ggtttaggtt atgtaggagc tgctaatgct
     5041 tatagcatag ttactcaagg aatttgctca gaactttatt tatatgatat aaaacaagat
     5101 ttagctctag ctcatgcaag agatttggaa gatatgtcag ccattcattt ttcttataca
     5161 aaaatttttc atgtgccaaa tttagaaaat ttagcttctt gcgatattat cattttagct
     5221 tttagaaaag aaagcttaaa agaattacct agtcgcttag tagaacttca aaacaatatc
     5281 ctcgaactta aagacattgt cttaacctta aaaaatgcta attttaaagg caaatacatt
     5341 gtcgcaacaa atccaaatga caccataact tactacactc aagtattaag ccaattacct
     5401 aaaaatcatg tttttggtag tggaacaaat ttagatagtt caagacttaa gaaattttta
     5461 gccaaagatt taaacataaa ttcaaaagat atttttgctt gtatgattgg tgaacatgga
     5521 gattctcagt ttgcagcact ttctaatgca agcgttttag gacaaaattt attagatttt
     5581 tataagcaaa aattaggcaa agatttagac atacaagaac tcgaaaaagc cgtgattagc
     5641 gagggatatt tcatctatga acgcaaagga agaacagaat ttggcatagg aacttcttgt
     5701 gtaaatttgg ccaaagccat cctagaagat agaaaaagtt tacatcctgt aagtgtggtt
     5761 tttgatgata tagctttttc aatgcccgct atcataggaa aagatggtat agaaaaggtt
     5821 tttgaattaa aattcaatga aaaagaaaaa ataaaattag aaaattcaaa acaacaaatc
     5881 aaaaacgcca tacaaagcgt aaaagataaa atttaagcct ttttaaaagg ctttttgatt
     5941 ttgatataaa ttaaacttgc taaaatcaca aaaacaatta taatgattaa aatttgagtt
     6001 aaataagttt taatcaactc ttcattttgt cctatataat aacccaaaaa tacaagtata
     6061 gccacccaaa tagcactacc aagtgcagta aaaagtataa aatttacaag tttcattttt
     6121 accaaacctg caggcataga aatatactga cgaatccctg gcaaaagacg acaagtaaag
     6181 gttgaaaatt ccccatgttt gttaaaaaat tcttcaaatt tagcaaattt gacttcgttt
     6241 ataccaaaat acttacccca ttttaataca aaatttttac cccaaaaaaa gcaaatataa
     6301 taattaatca aagcccctaa aacagaacct aaagtcccac taagtataca aagagtgata
     6361 tcaagttcgc ctttatgtgc caaatatcca gcaggtatca taacaacttc acttggaaaa
     6421 ggtataaaac aactctctaa ggtcattaag ataataatac ccaaataccc ccaagcacta
     6481 gccgtctcaa caataaaaga aatgatttct tgcatattag ccttatttga agaaaatttt
     6541 aaaaaattgt agcttaaaag attaaacagt aaaaagcggt tttataccgc tttttttatt
     6601 tacctgcaac tgaaacttga tttggattgt ccgctgcacg agcgatcata cactctttta
     6661 aaacagcagc atcagctgga tcgctaactt ttttattaat ccagcgttca acttgtttca
     6721 ttgtttttga ctctggctct ggagcttcgt attttgccat caaacttgca caatcagcca
     6781 aagcaatgat aggtaataaa cttgcaaaaa gtatttttct catcttttgc tccttagaat
     6841 tttacattat acattaacat gatattatca gctcttgctt tatctttttt cgctccacca
     6901 aatggtaagc cacgattacc ccaaatattt tggatattag tataacttaa gcgtaagaat
     6961 tgatatctat caagttgata aatcacataa aaatcatgtg ctgttcctct tgtcattctt
     7021 atattaagcg gatcgttgat acttggacgg ctcatagtat accagtatct acttccccag
     7081 aaaaactcat accctacttt taaagccttg gtaaaatcat agcgtccgcc tacatgcaca
     7141 gcatagccat cttcttcatt gaacgcacca tttccataac cttgcttttg aagaattcca
     7201 cttaatacag ggcttaattg attgttgttc ccgtgagaat aacctaaaga tagaaaataa
     7261 ttaaaattcg ttccaaaagc tttgtaattt tcaaaatgaa gatttgctat agttaaatct
     7321 cctaaattta ccaccccatc atcatcaaga atagtagtaa caccattact aggtaaacca
     7381 attggaccat tgttaagtgg taaagcaaaa tcacttaaat atgcaatatt aaataatatt
     7441 aaattatctc ccataccttc tataggaagc tctccttcta ctgcagcata gtaaagattt
     7501 gcatcagcat ctttttgatc gctcatccag tctcttacct tgccttcttc atcccattga
     7561 taagttttac cataagctgc acggatagct actttatgat cttgcaaacc ttcaggttta
     7621 taagtgatca ctgctgcatc acctagagca ttaatcgcta aggctggata agttgattgt
     7681 cttaaagcat tgtttctaag attacttcct gggccatcgg ttcctggttg tcttcctaca
     7741 gtcgcaatcc attcaggtgt gatgtagtag tcaagataag ctctatctac ataaattaca
     7801 ggcccgcttg atcttgtgtt tcttcctgca tctaagtcat aaggagtacc actccaaccc
     7861 atttgagacc aatttttagc catagataaa cgaccataga atttggtttt atcattaata
     7921 tcagcattca tatttaaatg aagctcattc atccatttgt tattagcact ataatcttgt
     7981 ccgctaactt tatagtttgt atttgaaact gctgttgaaa actcaagtcc aaatttaacc
     8041 ttgctcaaag cagcttggaa ttctgtttca tcggctctat cattaagatc agcaagttca
     8101 gcttttacag cttcattttg cttagcttga gcttcccttt cttttctgat ttgtgcaagt
     8161 tcagcttgaa tttgtgcaag ctgtttttga agcttggtta tctcatcatc tgtattttta
     8221 gcaaaaagtg aagatgaaag aagacaagca cttaaaataa gtgaaaactt agttttcata
     8281 atcataactc cttgtaattt tgttacattt agcaaattaa aattgtgatt atagaaaaaa
     8341 aagtttaaaa aaaaattata cattaatcat ttttagctag tcaaacttat gactagcttt
     8401 gtaaatatta tagtttcaaa aaagttttaa agttttaaat ttttaaattt tatcgcaaat
     8461 ttttatgtct aaaattttat ctccttggcg tatagagtct aaaacttcta aactttcttc
     8521 atcttttgga tcaatttgcc caaaaacagt atgaacccca tctaaatgag cttgagggct
     8581 gtgacaaatg aaaaattgag aaccacccgt atcgcgtcct gcgtgtgcca tagataaggc
     8641 tccacactca tgtttatgct cttgatcatc acattcgcaa atgatttcat atccaggccc
     8701 acctacacca ttgccgtgtg gacaacctcc ttgtatgaca aaatttggga tcacacgatg
     8761 aaaatttaaa tctttataaa atccctcatt agccaaagta gcaaaattac aaaccgtttg
     8821 cggagcctca tcgccaaaaa gttttaattt cattgtgcct ttttcagttt ctataagagc
     8881 aaatttgtat tcatttactt tgcttgtgtc gattgttttt atcattattt ctccttaatc
     8941 tatatttgta taaacagctt gaacatcatc atcatcttct aacttatcta aaagtttttc
     9001 tatatcgcta agctgttctt cgctaaagct tacaggattg tttggcatat actcaagtcc
     9061 tgctttttta agaactaaac ccttagtctc tatagcagaa cttagctcac caaaggcagt
     9121 ataatcacca ctaattacta actcttcttc attttgttct aattcttcaa gccctgcatc
     9181 gatcaaatca agttctaatt cttctaaatc tcctgcaaat ttttcaagat gaaaaaccgc
     9241 ttttctagta aacataaagc ctaaagatcc attttgtaaa acttctccac catttttgct
     9301 aaaaatggct ttaacattag ccacggtgcg cgtagggtta tcgctcatac attcaactat
     9361 aaccaaagct ccatgtgcag cttttccttc ataatgaatg tttttaatat ctgcgctatc
     9421 ttttccactc gcacgcttaa tagccgcatc tatattatct tttggcatat tatttgcttt
     9481 tgctgtggct atagcacttc ttaattttgg attcatatca ggatcagtgc caccttcttt
     9541 agcagctact tgtatggctt tagcaagctt aggaaaaagc ttactcattt tatcccatct
     9601 agcctcttta gaagctcttc ggtattcaaa cgctcgtccc ataaattctc actttcttta
     9661 aagattttta aacttaaaag tataaactaa aaaggctaat taaagcttta aatggtatga
     9721 ttttaccatt tatttttggg gagaagcttt ttgaatatcg caaaaaaaga actttttgtt
     9781 gcttggtttt tcttgattgc tgctattgta tttgaagttt taggcactag ttttttaaaa
     9841 atggaaaatc aagttttagg ctatatattt atggctttat ttatagcttt ttcttatttt
     9901 tttatgggca aggcgattaa aaaaattcaa gtaggcatag cctatgctgt atgggagctt
     9961 ttagggatta ttcttatact tttagtttct tttatagttt ttaaagagag tttaacctta
    10021 actcaaattc taggcattat tctttctatc gttggaatta tcatgattaa tataggcgag
    10081 gttaaagaat aatgtatatt tttatcattg ttttatcagc attgttagat atcgtagcaa
    10141 atttattgct aaaaaaatca gatggtttta agcataaaat ttggggcttg gctgcgattg
    10201 tcaatgctat acttgctttt tttctacttt ctttttcttt aaaatatgtt cctttaagca
    10261 tagcttactc aacttggggt gctataggca tcataggaac ttgtcttggt ggatggattt
    10321 tatataaaga aaaattaaac aaaataggaa ttttaggtat cattatcgta ataatagcag
    10381 tatttttgct aaattattaa aacagcaaaa tgcggtttta atgttccatt ttgttttttg
    10441 cttcaatacc cattaaagaa aatgcggttt taatactaag agcaaccaaa gaaaataatt
    10501 taagcaaatc attttcattt gcagagccta caactttatt ttcattgtag aatttatgaa
    10561 aatttgcagc taaattttta agataatcag gaattttttg caaagctcta gcctcaaaag
    10621 catcgtttaa aacagccttt aaattcaaag cttcaaaaag caaatttacg ccatcttgat
    10681 ttaaactttg taaatcagct ttcattacat catcgatttt tttaccagct ttagcaaata
    10741 cttgatgaat tctagcgtgt gcatagttga tataatacac aggattagaa ctatcttctt
    10801 tttgcaaatc actaatatca aattccaaat gcgtatcgca ttttttgctc aaaaagatat
    10861 aacgcaaagc atcacttcct atctcattaa ccacatcgct catcaagata aaatttcctg
    10921 ctcttttact cattttataa ggttctccat ctttaagtag ggaaaccatt tgtgctaaaa
    10981 taatctcaag attattagag tcaaatccca aaaattccat cgcagctttc attctaggga
    11041 tataaccatg atgatctgct ccccaaatat taatacactt tccataacca cgactcattt
    11101 tatctttatg ataaacaata tctgctgcca aataagtccc gcgtccatct tcacggataa
    11161 ttactctatc tttttcatcg cctttttgcg aagaagcaag ccaaatttta ccttcttgct
    11221 cgtaaattcc tttatgctct tttaaagatt ctaaagttgc atttaaagca tcataatacg
    11281 atctttcgct tacatagctg tcaattttaa tctttgcttg ttctaaattt tgtttaatca
    11341 aaacaagcat tttatctttt gcccaatcag ccaaactagg gatattttct tcgctaaaaa
    11401 attctttacc aaatttttca aaagcttctt ttgctaaatc cgctatatac tcgcctttgt
    11461 aatattgctc tggatattca acattttcat gaagtatact ttctttcaca cttagtaaaa
    11521 tagaaagccc tagtaaataa atttgattac ccgcatcatt gacatagtat tctgtattaa
    11581 atttatagcc caaatgtctt gcaagtcttg ttaaggtgtc tccaaaaaca gcgcctcttg
    11641 catgtcctat gtgtaaaggc ccagtaggat ttgcactcac atattcaagc aaaaaacttt
    11701 cttgtttttt ttctccttta gtaaaatcat ttggatttgt taaagcctga tttgcaagtt
    11761 catttaaaaa agttttggaa attctaaaat ttaaataccc atttacagct tcaactgatt
    11821 caaaacaatc atgattttga aatttgctcg ctaagtcgct agcgatcaac ataggggatt
    11881 tttttaattc cttagccagt gaaaaagcca aaggggtagc aaaatgtgct aaatttttat
    11941 cctttggatt ttcaagcgca aaatcacact ctaaaatctt tttaatttca ttaaaaataa
    12001 tacttttcaa aagactaaac cttaagcttt ttttgtttcg tctatacttg catcagcatt
    12061 tgtattatta gttgtgtttt tattttcttc tattttttga gtattttttg ctacttcatc
    12121 atcattattc atttcatctt taaaagtttt aatacctttg cctaaaccct ttgcaagttc
    12181 tggaattttt tttgctccaa aaagcaatac aacaatcaat aaaataatca accaatgact
    12241 tggacttgac caaccaccca ttttattctc cttcattcca aatattttga atttgcccta
    12301 gattctgccc tttggttcta aatttatggg cgattaaaat cgctcgcaat gcttcataac
    12361 tttgctttaa ctcatcgtta atgataagat aatcatactc gctaagctct ttcatctcat
    12421 cactagcgtt ttgtaatctt ttttctagtt gtattattgt atcagtattt cgcttaataa
    12481 gtcttttttt taactcatct ttattttttg tagtaataaa aacagaaaca atcttatcag
    12541 ccattttttt tctggctatt ttaaatcctt gcacatcaat atcaaaaaca actatttttc
    12601 cattatctaa agcattttga gtgtgcttta aagaagtacc ataaaaattt tcatgcactc
    12661 tagcccattc taaaaaatga tcactatcta tacctttttg aaattcttca tgggatataa
    12721 aatgataatg tattccattt ttttcaccct ctcttggttt gcgagttgtt gaagaaatag
    12781 aaaaataaag ctcatcttca aattcatcaa aaagtttttt taaaagagtt gattttccag
    12841 caccactagg acctgaaatc aacaaaacaa aaccttgcaa tttcaatcct ctttaaaact
    12901 aatgtttata tttatattca tattcatacc cttaagagca gcttttaagg tatcatcttt
    12961 aatacttgaa gtgatcgctc ctgctatgct ttggctaagc tcattaacta tctcttcgct
    13021 attatcatct ttagttacat cacttactat aggctcttcg tttttttcta agatttcctc
    13081 tccaagagct tcttgtatat cactttcttt caatgtatca aaatcactta tatttaaatt
    13141 tggcacaacc acttcctctt catttgttcc taattcttta tcgtctaaaa ttggttcatc
    13201 tttaaaatct tctaagacct tgctactatt gtcactatca ataccataat caagctcatc
    13261 aagttgagct agttcttctt tgatttgatc ttgagtactc aaatttgaag caaaatcatc
    13321 tatttcatct tgaacatctt cttccacaac aggagcaaac tcctctaaat tttcctctga
    13381 ttcttcatta tattttgctt gacctaaaaa ttcagcatcc tcaggaagat catcaaaatc
    13441 catttctttt tcttgctctt caacctcagg aagatcatca aaatcgctta tattagcttg
    13501 taattctttg ttatcttcta aatcttcatc atttttatca tctagctcat ctaaactagg
    13561 ctcagtatcc aaagctgtat gttcttggct taagtcttct ttttcgcttt caccatcttc
    13621 taaagttaaa tctaaatcaa tttgagtgtc ttcttgagtc tgttctttaa ttgtttcttg
    13681 ttctaaattg tcatgttcta aattttgagt ttctaaagtt ttgtttgcat tatcatcttg
    13741 agcatcatca tcaaaactca aatcttccat tccctctgaa tttatatcta aagaattttc
    13801 atcaggcaaa tcatctaaat ttaaattatc taaatccaag cttatatcag cataaggatt
    13861 ttcatcattg cttaacattg gcaaatcaat agatgtatgc ttgttcgcat ctttattatt
    13921 aagtaaattt aaaaaatctg taggtaaaaa aggtttttgt aaaatttgcg catctatatc
    13981 ttctacattt tgatttcgcg gggctaaaaa aatcaatcta tcgcattttt ctttaagaat
    14041 ttttaaaggt gctggagtat cactatctac aacaatcaca tcataattac ccaaattttc
    14101 actataagca ttaagttctt caaaatcata agacattttt ttagcactaa ggcttacaag
    14161 tcttgaaact acagggtttt catttaaaag taaaattttc atcactttaa tccttaaaaa
    14221 ataatcgcta ttttacgata atttcattta tcctttcctt aggagaaaaa aagagtttgc
    14281 atatgagtaa aaagttctaa aattaaattt ttaaaatatt gcatcataac tagtaaaata
    14341 gcaattaaaa ctacaaaacc tagagctatc tttataggat agccaataac taaaagatta
    14401 aattgtggca ttgttttcat caaaagtcca aaaataacat cggctaaaag tgaaattcca
    14461 agtataggaa agctcatagt aaaacctatg atgaaaatat taaacatacc catatttaaa
    14521 taatgcatta aattctcatg cggataaaat ccacctaaac taatataacc caaagaatga
    14581 cttaaaaaca aaagcattaa atgatggcca tcaaaagcaa gaaaaaacat caaagcaagt
    14641 aaatttaaaa tttgtgccgt aataggcata ctcgttccag aacttggatc taatatactt
    14701 gccatagtaa atcccatagt aaaagcaatc tgctcacctg ccatcataat aatagcaaaa
    14761 ataatttgaa gcattaatcc tgccatcatt ccaaaaatca cttcactaat aagctgtaaa
    14821 acaaaaaaac tatctaaatg caaagattct aatctagcca aaggatataa atacatagtc
    14881 aaaaataaaa ctatagtact ttttattacc ataggaatag aattatgtga aaaaaaagga
    14941 aaaaaaacta taagaccact cattctagca agaagcaaca taaaagttac aacattttta
    15001 tcacctaaat aattaacaaa ttccattggc gtttatagta taagttttat cacaaaaact
    15061 tgcaagcttg ctatcgtgag ttacaaaaaa taaagctgca tcattttctt taacatagga
    15121 aattaaaagc tcgataacat ttttagcatt atcaaaatcc aaatttccag ttgcttcatc
    15181 agcaaaaata atctttggtt ttttacaaag cacacgtgcg atactcacac gctgttgttg
    15241 tccgccgcta agctttccta ttttttgatg taaaagcgta tcaataccta acctttttaa
    15301 aattttctca tctaaatctt gacccgataa aacactagca agttcgatat tttctaaagc
    15361 cgaaaaacct ttaaaaagat aatgtgtctg aaaaataata ccaaaatcat aacggcgaat
    15421 ttttaatctt tcgttttcat ctatctgata aagactagaa cctttaaaaa aaacttcacc
    15481 tttttttgga atcaataaag aagaaagtat atgcaaaaga gtagatttac cacaaccgct
    15541 actcccttga atagcaatgc aatctttggt atttaaagta agatttaaac cctcaaaaag
    15601 cggataatca aaactatggc ttaaattttc cgctcttaag agttccattt ttaaccgttt
    15661 ttaaagttgt gcagcaactt cagccgcaaa atcttcagtt ttcttttcta aaccttcgcc
    15721 aacttcaaag caaataaatt caacaatttt aatttttccg ccaaattctt tttctttttc
    15781 agcaattact tgttctacag tttttttatc atccattaca taaaactgac ccattaaagt
    15841 aagtttgcta tcgagttgag aattatcagc tataaaacta ttcattttgc ccgggataat
    15901 attgtcccaa attttttcag gtttaccttg agctttaagt tcttctttga ttttttcttc
    15961 agcttctttt aaaattgcat cgcttaattg tttgcgactt gcaaattgag gaattttatg
    16021 ttcaggttta tttggatctt tcagtctgcg tctttcttca ttttcttttt caagttcagc
    16081 aaccaaagct ttgtattcat tttcaacaaa agtcatatcc aaatcttcat aacttaaata
    16141 acttggtctc attgctgcaa tatgcataca aatttgtctt aacaaatctc ttgattttga
    16201 agccacttca gtgctatcac aagctgcagc gatcacaacg cccacacggc catttgtatg
    16261 gatataacca tttacaacgc cgttagcacc tgcttttaaa gttgcaaatc ttcttacaac
    16321 taggttttct cctatagttg caatttgact ttttaaatat tcttcaaatt ttacaccatt
    16381 aatcgtactt gagtgaagct cttccacact ttgcaagcta ttgctttgaa tatgagctgt
    16441 agtatctttt gttaaagcga taaactgatc attttttgcc acaaaatctg tttcggaatt
    16501 aatctcactt acagttgcgc ttgtaaaatc atcacttact tttacactta ctaaaccttc
    16561 tgcagcaagt ctatctgctt ttttagcagc cttacctaaa cctttttctc ttaaaagttg
    16621 tactgcttta tcaaaatctc cattagtttc actcaaagca tttttacaat ccatcatccc
    16681 cgcgcctgta ctttcgcgga gttcttttac cattgcagca gtaatttcag ccattattct
    16741 tgctcctcac caaagtcttc ttcgctcatc gcttcatcta aaacttcttt tttctcttca
    16801 tcggtgattt ctttttcttc atttgctaaa gcttcgccat cttgttctct taaagctttt
    16861 ccttcattaa tcgcttcagc catttcttgg cagaaaagtt gcactgaacg aattgcatca
    16921 tcatttcctg gaataggata agttaccaag tcaggatcgc agtttgtatc tagtggagct
    16981 acaacaggaa ttcttaatct atttgcttct tgaacagcaa ttttttcttt tactgtgtca
    17041 ataacaaaaa tcatatcagg ttgagttttc atataacgaa ttccacctaa ataagctaat
    17101 aatttttctt tttttcttgt aagcattaaa gcttcttttt tagttaaaag tttaatactt
    17161 ccatcttctt ccattttttc aattacttct aattttctaa ttgattggcg aatggtacca
    17221 aaatttgtca tcataccgcc aagccatcta tgatttacat aaggcatacc gcatttttca
    17281 gcgtattctt taatcgctcc acctgcttgt ttttttgtcc cgacaaaaag tatagttttt
    17341 ccttcggcag cagcgtcacg aacgatatta taggtatatc taaaatatct taaagttttt
    17401 tgtaaatcaa ttacataaat accttttctc tcgccaaaaa tgaatttttt catctttgga
    17461 ttccagcgtc ttgtttggtg tccaaaatgc acaccgcatt ctaataaatc tctcatacta
    17521 accatgagtt tctccttata aatttagctt tattcctcca catcccttaa tttacacaag
    17581 ctaaaaagga ttgatgcgtg tgaaatgaag ctaagatttt atcaaattta agtttagttt
    17641 ttacttatat atgtagtcct tggtaagact tagattatta ttgatttctt ttgtgattaa
    17701 aaattgaaac aaatccacgc ttccaacacg aaaagcagag gcacaagaac gaaggtacaa
    17761 atcccacatt cttataaatt cttcatcata tttttccctt accttgtcca atacttcgtt
    17821 aaaattttca tcccataaat ctaaagtttt tgcatagtgc attcttaaac tttctgctaa
    17881 aagaagatga aaatcccact cactcatagc acttacaacc tctcttaaag aaggtaaata
    17941 tcctcctgga aaaatatatt tatctatcca agcatttgtt tttccttcaa acatggctaa
    18001 aatagaatgt aaaagcatag aacctccagg ttttaacact tgttttactt tcatgaaata
    18061 aagtcctaaa ttctctttgc ctacatgttc aaacataccc acagaaacaa ctttatcaaa
    18121 ataattttca aattctaaat cttgataatt ttgaagtctt atttctattt tatcttcaag
    18181 accaagttct tttactcttt ccttagcttt tttacactgc tcctctgaaa tagtaattcc
    18241 aacaacctta actccatact tttgagccgc cataatagaa agccaacccc agccacaacc
    18301 tatatctaaa agcttttctc cttcttttaa atcaagtttt ttaagagtat gttctatttt
    18361 gttaatttga gcttcataaa gagtattatt aggctcttta aaataagcgc aagaatagct
    18421 catagtatca tcaagccaaa gcttataaaa atcattacct atatcataat gacttttgat
    18481 atttttactt tcctgttttt gggctatttt actcaagata tcctctgtat tttttaaaaa
    18541 acgcttattt gaaaaataat acaaaacttt agctatttca tcataatcac cttctatttc
    18601 tagtttagac tccatataat gttttgcaaa aactaaactc gtatcactaa ataattttaa
    18661 aaaaggtatt ttttctttga aaattaaaga aaatttagca ggctgattac ccacatgaaa
    18721 ttcttcttga tcccaaaata caattctaaa atttccataa ttccattttg aaagaataaa
    18781 tttaatcatt tgtttttcaa gcataacata ctccaactaa taaaaattat tatttgatag
    18841 tatctcttaa ttatgtttaa aatttgataa aattgaagaa aagatagaat ttttgccaca
    18901 gatataaaat agtggcaaaa attttataat actaatgtaa tttagaccaa acagaacgct
    18961 tccaacctat agcaaaaata cttaaaatta caaagaatat cattacataa attcctgtag
    19021 tttttctttc ttcttttttg ctatcaccca cttgatcaat ataagataca accttagcct
    19081 gtgcagcttc tgttaaacct actcttggca tagcggttcc tggaagaagt ttttgagtat
    19141 tattaataaa atcatgtaaa tattgctcac cacgagatct tatcatcata gaaagatcag
    19201 gtggaacaga acctaaataa gtttttaaat cattttgatt tgatggagta aaaaagctat
    19261 cgtatttcat atcatgacaa cgtccgcaag cctcaataaa agttgcttta tctttagcaa
    19321 attttatatc tttttccatt aaagctgctt tttgagcact attttccatt ttagcatatt
    19381 ttgcctcaac atctttctta atagtagcat cttcattggc ttcaaattta acactcacat
    19441 ctttaagata agcaattaca ttggctatat ttgcatttgt agcttcttca ctttctcctg
    19501 aagtatcttt attgtaagct gtcataataa aagcatcacc aaatttatga tctactttta
    19561 aagcaagcgc aggatgcata atcaaagctg ctaaaaattt ttcatcaaaa atagcaccag
    19621 ctgcactgag atcaggcggt attactccca tagaagaatc agtaatatta gctgctattc
    19681 catcttcttt tacaccatga catgcaaaac agttattttc aaaaaattct ttaccttttt
    19741 ttgcatcacc cttagcaaaa tcgatctttg caacatctgc ccaaagtgtt tcaaccttgc
    19801 ttaattcttc ttttgctttt tcaagttctt tgtttgcact ctctattctt ttagcatctc
    19861 ctgaagcttg tgcatctttt agagctaatt ctttagcttc aactatacct tttgcaaaag
    19921 tagtatcttc aacagcaaaa tcaaaatttg caggagcaac atgaggcttc atcactgaat
    19981 gagcataagg ctctaccccc caatatacaa gtgcagtaaa aactactaca actaaaaata
    20041 tttttatttc tctcattgtt tagctccttt tctctccata atagtaataa ccggtaaaac
    20101 tacaataagt aaaagtaaaa atactataga agcgtaaaat cctacccaag catttacacc
    20161 tgttggaggt aattttccat aaactgttaa aacaattaaa tcgataagca atatccaaaa
    20221 ccaaatgaaa aataaaggtc tttcatgagc tggttttacc acatcacttc tatcaagcca
    20281 aggaagcaag aagaaaatca cttgagcaat accaaatgca gccaaaccta tatcaaaagc
    20341 tttaatactt gcaatatcaa agaaaaatcc tcttaaaact tcataactcc ataagaaata
    20401 ccactcagga taaatatgag ctggtgtttt aagcgcatta gctggatcaa aattaattgg
    20461 atccattgca aattcaaatt taaaacagac caaataaaag aagaaaatca taaaaaagct
    20521 tatatacata aaatcttttg ataaaaatcc tggccaaaaa ggaatcactt tagaaccctt
    20581 tgtgtcacct gccatatatt tctcagcctc taaatcaaag tcaagttctt cagaaatttc
    20641 attattaaca tgaggaattc ttaaagaata gaagtgaaat gctataatag caatgataac
    20701 tataggaagc aagcacacat gaagcataaa aaatcttgtt aaagttggat cagaaaccgc
    20761 ataatctcca cgaatccaaa tcacaagctc agggccaata aatggtatcc ctccaaaaag
    20821 attagtgatt acttgagctg cccaataact catttgtccc caaggaagca tatacccact
    20881 aaaagcttca gcagaaaata caacaaacaa aagcataccg ctaacccaaa tcatctcacg
    20941 acctttttta taagaaccgt aataaattcc tgttagcata tgtatgtata taatcaaaaa
    21001 tacaacagaa gcggcaacac catgcatgtg acgccaaagc catccatagt ccacctcttg
    21061 cataatagtc ttattcacac tatcaaaagc aagtgcagta tctggtttat aatacatcac
    21121 aagtaaaagt cctgtaacaa aaagcactgc aaaaagagtg gttaaaataa cccccattgc
    21181 ccaaagaaag ttaatttgct ttggtatcca atactttacc attaaaacat caagcagttt
    21241 atgtaccgca agtctttgat caagccaatc tacaagacca ttagcttttc taatttgtgc
    21301 catcttaagc ctccgctatc atttttttat attcaggacc ctcttcacct aaaacaagct
    21361 tggttccatc aattttaaaa ggaggaattt caagaggctt tggaggaggt ccaaagacat
    21421 tttttccact tgtgtcaaat tctccaccat gacaggcgca tttaaacaat tgctcacttg
    21481 gttggtaagc aggtatacaa cccaaatgcg tacaaagtcc tataaccaca gtataagctg
    21541 cgttatctac cacaacatca cgtttttcat cttttggcat actcgcatct ttttttaata
    21601 taaaaatagg ctttttacgc cattctatag ttctaagctc cccatcttgc attcctgata
    21661 aatctactgt agtaaaacct gcagctttaa cacttggaag cggatcccaa gtttttttca
    21721 tcgcaacaag tgagaaaata ccgcctacag cagctacgct tccaaatgca aagcccataa
    21781 agcttcgtct actctcagat gtagccataa cttgctcctt tcgattttat tttttaacca
    21841 agttaaaagt ttatcgaaat taaaataaat tttttctttg tttaacaagt tttgatattt
    21901 agacaataag agcaaaaaga gaaaaaacaa gcacaggtaa agttatcaaa aagccaaatt
    21961 tacaatattg ccaaaaagaa atattaatgc cttttctagc caaaactcca agccaaagca
    22021 aagttgctaa agaacctatt ggcgtaagtt ttggacctat atttacacct aaaagatgtg
    22081 cataaatcat caaagaatca aaagaaaaat tctcaaaata ttcttttaat gccaaatctc
    22141 cgattaaaac cataggcaaa ttattaaaca cagaagatcc aaaagctgaa atcaaggcca
    22201 caccaaaaat tccactctta tcttgcatca aaaaagcata gcttttaacc aaaatttcac
    22261 tcacacctat tttatgtaaa gcaaaaacca ccatataaag cccaaaacta aaaagcaaaa
    22321 ctccataagg tgcttcaaaa agaattttaa tactttttta ccttgaattt ttaaaataat
    22381 aagccaaaaa attcccgccc aaagcaaagc aaaaaaactt attttaatat taaaaatttc
    22441 acctataaaa aaactgataa caaaaagaaa taaaaatact atgcaaagaa aaaacaattt
    22501 caatgaaatt tgctcttttt tgattaattt aaattcaagc cttttaggta aaactctcac
    22561 ataaagcaca aaaaccgtaa ctatagtaga aagcaaaaca aaaaaatttg gcaaaaacat
    22621 atttttagca aattctaaaa attctatctt aaaataattt gctgtgatga tattggttaa
    22681 atttgaaata accaaagcgt ttgaacttgc atcacataaa aaagaaaggc taagtaaaaa
    22741 agaacttaaa ataaaagcat gatttttaca atctttaaga gttgaaaata aagctataat
    22801 aataggtgta atgattaaaa tcgctccatc gttagcaaaa aatgcagaaa gaaaaaatac
    22861 aaaaatcaac aaaaataaca tcattttttt tgtactgata taaatttttt cttgattttt
    22921 ctctctagaa aaatacaaaa ttttactcgc aataaaatca aaaaatccca aagcttccaa
    22981 gctaaaagaa aggataatca acccaaccaa agttaaagaa ctatcccaaa ccaaagaaaa
    23041 aataaaacaa gcatctttaa aatctaccaa ttgaaaaata aaaacaaaaa aagcccccaa
    23101 gctagaaaat acccaaatag gtaaatccca tggacgccaa aaaagtaaaa ctaaagtaga
    23161 taaaaaaata aaaaaagcaa gcatttaagc ttttttcttt tgcattttga tataaatttg
    23221 caaaatatcc aacgctgcag gagtgattcc actgatttga cttgcagcaa aaatggttgg
    23281 aggtttatga tgattaagct tttctacaac ctcattactc aaaccactta cacttttaaa
    23341 atcaaaattt tcaggaattt taagctcact aagatttttc attttttcta cttgagcttt
    23401 ttgcatacta atgtaatgat aatactttgc ctcatttaaa atctctctta aggagtaatg
    23461 atccatggtt tcaaatatag ggtcaagttt ttttaatttt tctatatcaa aacttgctct
    23521 tgcaacaatt ttttgaagat tgactataga agaaatttta tcttctccta aactctctag
    23581 aaaagcatta ttttggttgt taggcgtaaa ttctttagaa agtaaaaatt caagtccttt
    23641 ttgaagattg tttgcgatat tttgtatata agtaaaatct tgctcgctta aaagccctaa
    23701 atcatagcca tattttccaa gtctaagtat agcattttct tcccttaaaa gcagtctaaa
    23761 ttccgctctt gaagtaaaca ttctataagg ttcttttgtg ccttttacta ccaaatcatc
    23821 gattaaaact cctatataag cttcatcacg ccttaaaatc aaaggctctt tcatatctat
    23881 gcttaagctt gcattgattc ccgccataaa gccttgtgct gcagcctctt cataacctgt
    23941 agttccatta atctgtcctg cacaataaag atttttaatc tttttaagtt ctaaagtatg
    24001 cttaagttca gttggctcta tatagtcata ttctatagca taaccaaaac gggttatttt
    24061 agcattttca aaacccttta cagaacgcaa catttgaatt tgtacttcat aaggtaaaga
    24121 agtagaaaaa ccattgatat aatactccgt cgcatcgata gtttgaggct ctataaaaag
    24181 atgatggctt tctttgtcgc taaaacgatt gatcttatct tctatagaag gacaatacct
    24241 tggccccaca ccttcaatct gtcctgtaaa aagcggagca cgataaaaat tattcttaat
    24301 aatctcatgt gtagttgtat tagtgcgtgc gatataacaa ggaagttgag taggattgaa
    24361 atttcttgaa cgaaaactaa aagctttagg atttacatca ccatcttgaa tttcaagcac
    24421 gctaaaatca atgctttttg catccactct tgggcaagtt cctgttttta aacgtcccat
    24481 ttttaaaccc aaagtttgca gataatttcc taaatttacc gaagcaagct cccctaccct
    24541 tcctgcttga agtttgtttt cacctacgtg aataagtcca tttaaaaaag ttcctgttgt
    24601 aagtatcact tttttggcaa aatatatatt ttctaaattt gtttttacgc ctttaacttc
    24661 atcattttct acgattaaaa cactcgcttg ttcttgagaa atttctaaat ttggaagttt
    24721 taaaagttta ttacgtgtaa tgatacggta tttatccata tcaatttgtg ccctacttcc
    24781 ttgaacggct acacccttac tttcatttaa aatgcgaaat tgtatccctg cttcatcggt
    24841 gatttcaccc ataagaccac ccatggcatc aagttctttt accaaatgcc ctttagcaag
    24901 tccacctatg gctggattac aacttgccgc tcctatttgc tcaatcaatg tagttaaaag
    24961 taaggttttt ttacccattc tagcagcagc agcacttgct tcaacacctg catgtccacc
    25021 acctataaca atgacatcaa acatattttg ccttgaaaaa tgtgaatttt taaaagaaag
    25081 attatataat atttagactt aaaacaaact cgttttaagt ctaacaaaaa tttatttagc
    25141 ttcttgaaga gaaaagatta gctcattata agttttatct gcatctttgc agaaattttt
    25201 aagcatctca acacccttat ttaagccttg ttgctgttct gctcttaaaa gatcgctata
    25261 aagactttct attgtagaaa tagcgctttt atttggcata cgacgaacgg aataatagcc
    25321 tatgatatta ttattaacat ctattgatgg ggttacattt gcaaaaaccc aatagtaatt
    25381 gttatctttg gttttatttt ttacgtaagc aaaaatttct ttgccttctt tcatataatc
    25441 ccataaatat ttaaaaacag tttttggcat ctcttcatgt cttactatgt tatgaggttt
    25501 atttaaaact tcacccatgg tataacctgc atactttaaa aaatcatcat ttgcataaac
    25561 tattttacct tttaaatctg ttttagaagt aattaaacta tcttcttgta aaaaaatttc
    25621 tcttgacatt ttcccaccct cttaatttat atttttaatt ttgctaagat ttcagcactt
    25681 ctttgctcta gtgatttaat atcatttaca atcgcatcat aagctttttg atcgatataa
    25741 tcttgacttg attcttctat tgctttttta gcgttatctt ttataaattc tttagctaaa
    25801 tttaactcag tttcagaact aagctcatta ataacacctt gagctctctc atcttgacaa
    25861 agattagaaa ttggatctac actttcaaga ttgaaatttt gagccccatt taaatttaaa
    25921 tatatatttg atttataaag aatatgatcg attttaacca cagacaaaat caatctcttt
    25981 gcaaaggatc caaaattaac accaagagca ctactatttt cttctagacg tttaaaagct
    26041 tgagaaaatt tattaattct ttcttcagat tcactaacaa tgttaaaaac ttgctcactg
    26101 ccactttgga tatttacaaa atcttgttgc atagtctgaa ttgcaataga aatttcgctt
    26161 gtagatcttt gagttctttc tgctaacttt ctaacttcat cagccacaac cgcaaagccc
    26221 ctaccatgct ctcctgcacg cgcagcttca atagcagcat ttaaagctag aagattggtt
    26281 tgatcggcta tatcgcgtat tacttcaacc actgaagtaa tattttggga attagccaca
    26341 aaagtttgca ctgtttcctt gctcgaattt acaacatcca ttaaagaacc catagcactt
    26401 tgcaaagaat ccacctctga gccattttct gtagctgtat gagaaatggc atccactgta
    26461 tcatatacat ttttcatcat gctaatatct tgatttaatg agctagaaat ttgagacata
    26521 tctttatttt gatttccaag gcttaaatcc attaaagttc ttgataaagc atttttaaaa
    26581 gtagatcttg ctgtcacttc tatgtttgct aaagctttat ttataaattc gatattatga
    26641 gcaaaaattc cttttaaacc ttcaggcaaa gccttacgat aaaattcacc tttttgagaa
    26701 catgaaatag aagtattaat ttcccttaag taagcttcta gcccatcaat agtattgtta
    26761 agattatctg ctatttcggc taattttttg ctttttgttt ttacatagat gattctattg
    26821 tcgaaattac cctcctttaa ctctctacaa agaaccaaaa gtttatctat cattatttgc
    26881 tcatctttgt gttgtctaag caaataaatc attaaaacag cgattaaaac aaaaattatc
    26941 gctccaacaa aaatatgaat aaaaatgaca cctaaaacac cgataacact tagaaaaata
    27001 gttaataata atccattttt caccataaat ttaccccttt ttattgaaaa ttttttgaag
    27061 tcataaatca aaacaatact ttaataatat attactttaa tttctaggtg aaaattatac
    27121 aataaaaaag attaaatata tcttatttaa ttattttctt gtaagttaaa aataagttca
    27181 ttataagtca ttttataaga acttacaata tccattaaag ctgaaactcc agcattaatg
    27241 cctgattttt gctctttttc aagtaaaatt ttataaactt cttcaattat agaaagagat
    27301 tttctattgg gtgcacgacg aacagaataa taattgacga tatctccatt agcatcaaat
    27361 gaagcactta catttgcaaa aacccagtaa aaattaccat ctttggattt atttttcaca
    27421 aatgcaaaaa tttcatctcc tttttgaata taatcccaaa gacatttaaa tacagtgcgt
    27481 ggcatatctt catgtcttac tatattatga gatttatata aaagctcatc gactttataa
    27541 cctgcgtatt ttaaaaagtc attattggca taaatgatat tccccttaag atctgtt
//
LOCUS       DAPOLW010000004        26506 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.004, whole genome shotgun sequence.
ACCESSION   DAPOLW010000004 DAPOLW010000000
VERSION     DAPOLW010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26506)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26506)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26506
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.004"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..431
                     /gene="cmeD"
                     /locus_tag="ROE18_000115"
     CDS             <1..431
                     /gene="cmeD"
                     /locus_tag="ROE18_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HDX3650340.1"
                     /translation="QFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANA
                     RFSERKNKEELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQ
                     ALEAKFKAQSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
     gene            428..1168
                     /gene="cmeE"
                     /locus_tag="ROE18_000116"
     CDS             428..1168
                     /gene="cmeE"
                     /locus_tag="ROE18_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HDX3650341.1"
                     /translation="MKKILFLLLVFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLALDQESEKIALQNAQNSYQLALVEYENTKSRMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNKAKINIAYYNNIMAKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVRLGDDFFYKIDQNGTELKGKISLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            1171..4188
                     /gene="cmeF"
                     /locus_tag="ROE18_000117"
     CDS             1171..4188
                     /gene="cmeF"
                     /locus_tag="ROE18_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HDX3650342.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKINGDLNFVESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKIQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLEK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQTAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKD
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFQFCFKLDSKLRKIYEREKLN"
     gene            complement(4211..5017)
                     /locus_tag="ROE18_000118"
     CDS             complement(4211..5017)
                     /locus_tag="ROE18_000118"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDX3650343.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLNFEQNNMLKPMLFIKID
                     FAAGRILMKLSSNEKLFVTYIRNYFQDHNIEYNEMTNILILEYKNENTLELFEAFADE
                     SEHLKYCVNFEVDREEYKKFRQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDLSE
                     IRQKYLILVKLYHPDFHQGKSAIEKAYAREQFEKIQIAYDNLKALYKNNT"
     gene            complement(5018..5737)
                     /locus_tag="ROE18_000119"
     CDS             complement(5018..5737)
                     /locus_tag="ROE18_000119"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HDX3650344.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSRIEYKYIENCPKEINNGLIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSKSERRVINKNINTKVMLRTPNLSNEHL
                     FLYDKYHRFMEEKKNWKRYDLSFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDIL
                     EDGISSIYCFYDPDFSYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEVLWEK"
     gene            complement(5737..5988)
                     /locus_tag="ROE18_000120"
     CDS             complement(5737..5988)
                     /locus_tag="ROE18_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650345.1"
                     /translation="MDFLDSLKSIKKEMQANANTPKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNADIKKI"
     gene            complement(5992..7437)
                     /locus_tag="ROE18_000121"
     CDS             complement(5992..7437)
                     /locus_tag="ROE18_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HDX3650346.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDIARIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIAAIAATLKKIRESRE"
     gene            7577..8740
                     /gene="ftsW"
                     /locus_tag="ROE18_000122"
     CDS             7577..8740
                     /gene="ftsW"
                     /locus_tag="ROE18_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HDX3650347.1"
                     /translation="MVADKRLFYLSCILITIGIVFSYSLTAFTVLFLDYSEFHFFIRQ
                     LFFGISGILIMFFISRLDPDKALSKKIILAILIISFIFIIILPFLPSALATASGGAKR
                     WIRLGPLSISPVEFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGY
                     IYITQNDLGQSVISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIA
                     SWWGNIQDAFLPILPDWLANALRVSSNTEPYQISHSLNAIAHGGMFGEGLGLGTFKLG
                     FLSEVHTDFVLSGITEEIGLLGLGVICYIYLWMILRIFRIAGRCEEKQDFIFCSGIAL
                     LLLFSFFMNAFGIISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            8737..9753
                     /gene="murG"
                     /locus_tag="ROE18_000123"
     CDS             8737..9753
                     /gene="murG"
                     /locus_tag="ROE18_000123"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HDX3650348.1"
                     /translation="MTIVLTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDRAW
                     FESETRFKAKFFLSSRGVVNQNKLGKINSLLHTFKLSKECKQIFKDYDIKAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKEISPYPVADKFFD
                     NARIRKELKNIIFLGGSQGAHFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADIFDFSLNLEEKMKNADLAISRAGASTLFELCANTLPTIFIPYPYAAKNHQY
                     FNAKFLQDKALCQIFMQNNTYPDEILKAIFKLNLEDISTRLKDMAQKNGADILLEKAL
                     KLIK"
     gene            complement(9746..10906)
                     /locus_tag="ROE18_000124"
     CDS             complement(9746..10906)
                     /locus_tag="ROE18_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HDX3650349.1"
                     /translation="MLSFRKIFWLNVAIVIIVAFNLRAPITAIGPMIDIIQDEYNLNS
                     TLAGVLTSLPLIAFGSISFIVGYFSPIRAIIVGIFLIFIAELIRSYLGVYGLFLGMLG
                     IGCGIAIANVLLPSFIKEKFPKKMASMMGIYSLVLSISSIAGIALSMPLLNIFDLAGA
                     MVFWSVFSFIALMIYYPQAKNGRFFRIKKKAHKKINLLKNPTTWKITLFMGFQSFLAY
                     SLFFWYVQIIVEKGYDKDFATNMVLFSQLVAAPISLFGPLLLGKLKKSLHTPYIAILC
                     AMYAVSFGILLAFDTRFMIMLAAFIVGFPWGGVFGIALLFIAQKSSNAKIAARLSAFA
                     QGFGYLIAAQGQWIIGFFHDMFGNFTSSICILFIVGILVNIFGYLAYKSKVI"
     gene            complement(10914..11765)
                     /locus_tag="ROE18_000125"
     CDS             complement(10914..11765)
                     /locus_tag="ROE18_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDX3650350.1"
                     /translation="MKKYVLSLALLGSLLGASELKYQEFDGFKSPESIFVDKNYVYVS
                     NVGEKLEPLAKDNDGFISKLDKNGKVLEYKFLTHLNAPKGMMEIGKTLYVVDIDVLRG
                     FDLKTKKEIFNLPIKGAIFLNDIEKLDDNTLLVSDTGTGLILKVDLKTKQYDELLKLD
                     IAKFGGPNGLYLDRKNDKLFIAGYHPDGASGGVVMAYDLNDKKLSVIKNEKEAYDGIV
                     PYENALLVSSWGENLNGVIYRLEDDKALKLDLPSIKGPADIFIEGDTLWIPKMVEGKI
                     LKVELKN"
     gene            complement(11828..12718)
                     /locus_tag="ROE18_000126"
     CDS             complement(11828..12718)
                     /locus_tag="ROE18_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDX3650351.1"
                     /translation="MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVG
                     SHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSYTLSNVGLSKGVYEAYLFFFDNA
                     FLIELIYKYKDFFKLDQKFQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLK
                     FEEIFLHLLLNKNIYFISFLSGILKEFRLDLSQLFEYCGREFLSVNEMSNFAKLDLAT
                     FSKEFKKCFGQSPKKWLDEKRLQKAKILLKFSKKNINEIANECAFSSVAWFIERFKEK
                     YEQTPKQYQKTKNLYFLSKN"
     gene            complement(12715..13320)
                     /locus_tag="ROE18_000127"
     CDS             complement(12715..13320)
                     /locus_tag="ROE18_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDX3650352.1"
                     /translation="MWDKKIIAISDRKCVEIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICAKQKVTCFLHFFDRECLKLGHRYFHAPLSLLRKEPKLTKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVGHIFESSCKMGLEPKGIDFLKSLLEFSQIPLYAIGG
                     INAQNIENFKDINVVGVCMREILMKEKDLKKYLLECRQNLR"
     gene            complement(13310..14455)
                     /gene="thiH"
                     /locus_tag="ROE18_000128"
     CDS             complement(13310..14455)
                     /gene="thiH"
                     /locus_tag="ROE18_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HDX3650353.1"
                     /translation="MQDYMQYLPHMQEIKSEILNKVLSQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLNEAEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEDEYKILHEKGCDYVTVFQETYNPLKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFAALLGIDDFRKDALATALHAHFLQQAYSHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILAMLKRSNLQAVMSDSIYVG"
     gene            complement(14458..15234)
                     /locus_tag="ROE18_000129"
     CDS             complement(14458..15234)
                     /locus_tag="ROE18_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HDX3650354.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKAQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNAEEALRIARLSKELGCGELIKIE
                     VISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAAKAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPSQACEAMQMGVSAVMVNTAIAEAKDV
                     ALMAKAFSLAVNAGRAAFLAGLASVSKAKASSPLTGFLRD"
     gene            complement(15237..16040)
                     /gene="thiF"
                     /locus_tag="ROE18_000130"
     CDS             complement(15237..16040)
                     /gene="thiF"
                     /locus_tag="ROE18_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HDX3650355.1"
                     /translation="MMRVKFNGKELDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KIDEDNLKSLFKDIDIVCEAFDSAIAKAMIAQNFHRFYKDSVLICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKLGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(16037..16228)
                     /gene="thiS"
                     /locus_tag="ROE18_000131"
     CDS             complement(16037..16228)
                     /gene="thiS"
                     /locus_tag="ROE18_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HDX3650356.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGLKIELIALELNGEIIPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(16238..17335)
                     /gene="dapE"
                     /locus_tag="ROE18_000132"
     CDS             complement(16238..17335)
                     /gene="dapE"
                     /locus_tag="ROE18_000132"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HDX3650357.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFKDEGEHLAFGGHVDVVPAGEGWSNNAFVPMEKEGFIYARGAQDMKSGVA
                     AFVDAVKNADFKGARLSLILTSDEEGEAIYGTKAVLEWMQERDMLPDYAVVAEPTCVK
                     KIGDSIKIGRRGSINGKLLIRGKQGHVAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            complement(17339..17938)
                     /locus_tag="ROE18_000133"
     CDS             complement(17339..17938)
                     /locus_tag="ROE18_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HDX3650358.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLDNVIFMRFLAIFGFCFLTYMAYLMLRKKKESLNLEHKEF
                     KESLLKSYIKGAFLNGSNPFVIGFWLSAASVVLSSDHAYLMTLGLVVAILFWVSALAF
                     VVARYSHVFSAKVVFIINIISAIIIEYFALNLLYKTFLG"
     gene            complement(17931..18632)
                     /locus_tag="ROE18_000134"
     CDS             complement(17931..18632)
                     /locus_tag="ROE18_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HDX3650359.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSVTGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     VHLHGFLPELRCLKCEGIFNIGYEKITDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLNQTSLFISIGTSGAVLPVGRYASMCEKSILNIYEKDANLERYFDKIYIEDIISAID
                     KIALDIENFMKDGNV"
     gene            complement(18675..22496)
                     /locus_tag="ROE18_000135"
     CDS             complement(18675..22496)
                     /locus_tag="ROE18_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDX3650360.1"
                     /translation="MITKDNLKQVLENLGFKNKNENYVKTINNYTLLIDYKNQSINYP
                     KEIKIHDKTTSNFSHPENFVVFECVHRLLEKGYKAEYLELEPKWNLGRDKKGGKADIL
                     VKDNENNPYLIIECKTTDSKNSEFIKEWNRMQEDGGQLFSYFQQEKGVKYLCLYTSDF
                     SDKLEYKNYIIQAYDNEEYLKEKELQNSYKKSNNNIELFKTWKESYELQYFKQGIFEE
                     NVNAYKILEITPTFDNLKELKEEGKYHEFAKILRKHNISGKENAFDKLVNIFLCKIYD
                     ETFNKNNLKFGYFGVMADTYANMQDRLMWLYKEAMKEFLGEKITFVSNEDIEKDFKQL
                     KIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLTQNS
                     TNQFLGNLFELFLQKGMKQDEGQFFTPIQICEFIMYSLPLQEMLSKNSKALRVIDYAC
                     GAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILY
                     ADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSVKGFLETLSDKSKNTYKLF
                     NDDINIETNNSIECFFCERANQILNDNAKAAIILPSSILNKDSIYKNTREILFQNFDF
                     IAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAENLKDNENF
                     YQNYLSAYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYRNAFRQTSDYKKLKESKI
                     YKESKDKQDLEDKAFLAYTQAIEKDKLLYFCLSLNQEVLIIKSPSDIKEQKKFLGYEW
                     SNRKGDEGLKELHEPYLSPLFERGNPQNETKLNTLICKAFLKTLSDIPKDLQGYAGKA
                     RLIDMMDFEKVEFNKAISLNVKSRDELNPFKNSKYELVRLGEVCDLNKIRNQASATEI
                     EKMNLNSGNVKLLPSSKNYEWWTDEKTAGQFINEGEVITLGVARYANIKKHKGKFVSA
                     NNHILSVKDKSKIIFDFLYILLEICGQKLYKQGQQYPQFDTNIFYSFKIPLPPLEIQK
                     QIVAECEKVEEQYNTLSLSIKEYQNLIKAMLQKCGIIEDNQEYELNSILDKINNLCKI
                     NLDSEFLSSFNKTIKEYALSNPIFKLSIGKRVLNNELLENGQIPVYSANVLEVFGFVN
                     KEILQDYDNDSVLWGIDGDWMVGFIPKNKKFYPTDHCGVLRVDDTKINAKYISFILNE
                     AGKKQGFSRKLRASIDRIKALRVKLPSLEFQDQIADITDKIEKKINEYKIELDRLEKE
                     KEKILQKYLFS"
     gene            complement(22505..24715)
                     /locus_tag="ROE18_000136"
     CDS             complement(22505..24715)
                     /locus_tag="ROE18_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HDX3650361.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSNLHFKR
                     IHELCEVEFPTIPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     DSWLQKIEFVSGALELCLNFDEKGELKESLDERLVNLNAALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSNGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLAKNLPFLKFINTAFDLFDHYSARVLLAKKKDFEFVL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKASESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSKKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKFHKAIEEAKKTIQLK
                     DTKDKQRSLNKANELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPKPKISPKTSISVTKPSNLSVTLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLVYHGIGTGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVRL"
     gene            complement(24705..25055)
                     /locus_tag="ROE18_000137"
     CDS             complement(24705..25055)
                     /locus_tag="ROE18_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650362.1"
                     /translation="MSRFFLYLLIILILALITFALREKLGKKTKPFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            complement(25048..26346)
                     /locus_tag="ROE18_000138"
     CDS             complement(25048..26346)
                     /locus_tag="ROE18_000138"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HDX3650363.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITNELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLDDASVIIGAILKEFGSNMIYEESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYGNEVSKLHYAYTQFLDTAKIRVINAEDEFLKNYKNE
                     SIKLYPSKDIKNCTMCIENFKPFTSFELKDLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQEYAKLGGYK
                     KITAIFEPHRYTRLAANLKEFAKAFEGVDELIILPVYAAGEKPIELDLKAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
BASE COUNT         8861 a         4654 c         3518 g         9473 t
ORIGIN      
        1 atcaattctt agaaaaatat tctcaaggta atcaatttat tttaggtatg gaatggaaaa
       61 tttttgattt caatgcaagg gctaaagaag ttgaaaaaga gcgtttaaat gttcaaatag
      121 ccaatgcaaa tgcaagattt agcgagagaa aaaataaaga agaattaaat tatttagaca
      181 aaagtttaaa agttttacaa gaacaaattt tagctcttaa tcttagctta aatgctgcaa
      241 atttagcttt tgaaagtgta gataaaaaat accaagcagg acttgtttct tatgtagaat
      301 atcttcaagc tttagaggct aaatttaaag cacaaagcga tttagagctt gctaaaaatg
      361 aatttgaaat tactaaagca aattattatt ttaatgcggg tatagatctt aattcaaagg
      421 ttaaagaatg aaaaaaattc tatttttact tcttgttttt aattgcgcct ttggcgaaga
      481 aatttacgca agtttcaatg tagaagcatc aaaacaaagc aaacttgccc ttgaaagcat
      541 aggtttggtt caaaaaattc ctgtagaaat tggacaaaaa gtcagcaaag gagaactttt
      601 acttgctctt gatcaagaaa gtgaaaaaat agctcttcaa aatgctcaaa attcttatca
      661 gcttgccctt gtagaatacg aaaataccaa aagtaggatg caaaaaatca aagctgtaga
      721 aaatgttata gacaaacaaa gctatgaaga tatgaaagct aagtttgatg ctgctaattt
      781 aaatttaaac aaagcaaaaa tcaatatagc ttattataac aatatcatgg caaaaaaaga
      841 attacgcgca ccttatgatg ctattatcgc aaacaaattt atacaagtgg gcgaaggagt
      901 aggaggagta gctcaacctt taatagaaat tttttcctat ccacaaagca aactgatttt
      961 aagttttgat gaaaaatata aagataaagt tagattaggc gatgatttct tttataaaat
     1021 cgatcaaaat ggtacagaat tgaaaggaaa aatcagcctt atttatccaa gtatagaagt
     1081 aaaaacaaga aaaatttatg ctgaagtgca aaccacaaat ctaacaccag ggctttttgg
     1141 tgaaggtaga atcatcacta aagattaaaa atgtttaaac tagctataaa ccgacctatt
     1201 accgtgctaa tgtttttctt agctcttatg atttttgggc taatctctgc ttttagcatg
     1261 agtgtaaatt tatttcctaa tgtttccata cctcttataa aaatcacaag caagataaat
     1321 ggggatttaa atttcgtaga atcaaaagtc actaaagaaa tagaaaatgc tttaagtgaa
     1381 atcgatggag taaagaccat aacctcagct gcgtatgata attttagtgt gagtgtagtg
     1441 gagtttaaac tgggtaaaaa tcttgaagta gctgctaatg atgtgcgtga taaaatagga
     1501 actttaagcc taccttctaa gcctgaaatt gaaaaaatca gttcagattc tggttctgct
     1561 atttcgcttt ttttatattc taaagataaa atacaactca tgcgtgaaat caatgataaa
     1621 ataaaacctt ttttgcaaag agttgaagga gtaggtaaaa tcgaagctaa ggggttttta
     1681 gaaccccaaa ttcgcataga attaaaacca aacgaactta gaaaatacaa tcttaacgcc
     1741 cttgatgtag caaatatcat caaaagtcaa aattttaaac aagccctagg cgaacttaac
     1801 aacaatcaag ataactatat catcaaaggc tattttgaag ccacaaattt agaagaactt
     1861 agtaatcttc gcataaaaac aggggtattt ttaagtgata ttgctaatat ttcaagcctt
     1921 tatgaagatg aaaaacaaag tgctttatac gaaggtaaag aaggggtgct tttagaactc
     1981 ggaaaaatca caaattataa cacccttgaa atgattaaaa atgtcaaaaa tgccttgcct
     2041 attttagaaa aacaaattcc aaaagatata agcattaata tgctttatga taaaagctta
     2101 aatatccaca agcacctttc tcaagtgatt tttgatatgg ttttggggat ttttctaacc
     2161 cttgttatcg tgtttttatt tttaagaaat ttaagtgcaa ctctcattgc ttgcatagct
     2221 atacctactt ctatcatttc aacttttttt attatcgatc ttttaggcta tgatttaaac
     2281 cgcttaactt ttatagcttt aaccttaagc ataggaattt ttatcgatga tgctatagta
     2341 gtgattgaaa atattgctaa aaaactaaaa acttatccgc ctttacaagc tgctttttta
     2401 ggtatcaatg aaataggttt tagtgtttta agcataagta tagttttact ttgtgttttt
     2461 atccctattt cttatatgaa ctctatatca gggctttttt tcaatgcctt aggcataagc
     2521 gttgcaagtg ggatagttat aagctttttg gtttctgtat ttttaatacc tagtattggg
     2581 gcaagatttt taaatccaaa agaaaacaag ttttatgaaa aaacagaagc tttttttgaa
     2641 aaaatagagc aaaagtatga aaatttactc tataaaattt tacaaaataa agtaaaattt
     2701 atcctagcca ctcttgtttt tatagggctt tcttttgctt tagccactcg catagggctt
     2761 gattttttac ctatggaaga tgatagtgaa attcaagttt tgcttgaaag caaaaaggat
     2821 ttaagtttag aagccatgaa agaaaaaagt ttaaatttgc ttgaaaaaat caaaaatgat
     2881 agcaatgtca aatacgcttt tttacttgta ggctatgatg atgccaaaga tgctacaaag
     2941 gctaaaattt atgttaaact taaaaattta gacgaaagaa atttaagaca aactgccata
     3001 gtaagtttat atcgtcaaaa atttcaagat gaaagtttaa aaatcaaaat tttagaactt
     3061 ccaaagatag agggtgcagg cattgatgat cccgtgcaat ttttaatctt aggagatgat
     3121 ttaaacactc taaaagaagc tgcttctcag gcaaaagaaa ttttaggcac taatgcacgc
     3181 attgtagata taagtgataa tgctaatgct acaaaagatg aagtagcctt acacatcaac
     3241 aaagaaaaag ccaaactttt agatgtcaat cctcaatata tcgctggggt tttagggtat
     3301 tctttctcgc aacttagcgt aggaagcatg gatagaggca attcaaaaga tgatattatc
     3361 ctaagttttg ctccagaatt taaaaaagac atagaagctt taaagcgcat tagcattaaa
     3421 aacaaccaag gtataaattt agaactttca agcgtggtgg attttatata cagtaaagat
     3481 ttaaaaacta tcaatcgtta caataaaaac cgctctgtga aaatcacagc tggagtgaat
     3541 gatctttcct taggagcggt gcaaaaactt ttactagata atatggataa aattttaaat
     3601 aacaatccaa gtcttagcta tgctttttca ggctttatca atcttttagg tgaaaccgtg
     3661 caaggttttg ctatggcagt agcacttgct tttgttttaa tttatcttgt tttagccgca
     3721 ctttatgaaa gttttattct gcctttaatc atcatgataa ccatgccttt agcctttggc
     3781 ggagcttcta tagggctttt tatcacaggg cataattttt cactttttgt acttattgcc
     3841 atcatcttac tttttggtat ggtagggaaa aatgctattt tactcgtaga tgtagctaat
     3901 aaaaaatgcc atgaaggttt agatcccgat aaagctcttt taatcgctgg aaaatcgcgc
     3961 ttaagggcta tattgatgac aacttttgct atgatttttg ctatgctccc acttgctctt
     4021 tcaaggggtg cgggctatga agctaattct cctatggcaa tagccattat ctttggactt
     4081 ataagttcga ctttgcttac cttactcgta gtacctgcac tttttcaatt ttgttttaaa
     4141 ctagatagca aattaagaaa aatttatgag agagaaaaat taaattaacc caaatgatta
     4201 atttaatttt ttaagtatta ttcttataaa gtgcttttaa gttatcatag gcaatttgta
     4261 ttttttcaaa ctgctctctt gcgtaagctt tttctattgc actttttcct tgatgaaaat
     4321 caggatgata aagttttacc aaaatcaaat atttttgtct gatttcacta agatcatttt
     4381 gcggagtgca ttctaaagta ttaaaataat tactaaaaag cttagctaaa gcattaaatt
     4441 tccatttcat attttcttta ttgtgaatat tttggcgaaa ttttttatac tcttcgcggt
     4501 caacttcaaa attcacgcaa tattttaaat gctcgctctc atctgcaaaa gcttcaaaaa
     4561 gttcaagggt attctcgttt ttatattcta aaattagaat atttgtcatt tcattatatt
     4621 ctatattatg atcttgaaaa taatttctta tataagtaac aaataatttt tcattagagc
     4681 ttaacttcat caaaattcta cccgcagcaa aatcaatctt gataaacaac ataggcttaa
     4741 gcatattatt ttgctcaaaa tttaatctaa aagttttaaa atgagcatct tgtaaattct
     4801 ctataccttc atttgtgctt ttgcgatatt tttgatctaa aacttttaag aaataacggc
     4861 gctgaggaat ttcattttct tcaaaaaaag aaaaaatttt attttttcgc cctatgacct
     4921 ttgtgaaatt tttggtaatc aagtctttaa aatactgaaa tacgctaata tcatctgtat
     4981 taacattgat agtttctaaa gtttgcacga tttgcatcta tttctcccat aaaacctcat
     5041 tttcaaaaag ctctttggtg ccttttaaaa tttcattggg tgtataatcg gctttataag
     5101 ataaagattg acactttttt acaaaatacc caagataaat ataatctaag ttcatttttt
     5161 tagctatttg tatttcatta agcaaggaaa atttacccaa agaaaaatac gaaaaatcag
     5221 gatcataaaa acaataaatg cttgaaattc catcctctaa aatatcaatc aaatcaacac
     5281 aaacgagctt atcttctata taaaatgcaa gctcatatcc aaaattcata aaaccatcga
     5341 cataaagatt ataatactgc ttaaagctta aatcataacg cttccagttc tttttttctt
     5401 ccataaaacg atggtattta tcatataaaa acaaatgttc attgcttaaa ttgggtgttc
     5461 taagcataac tttggtgtta atatttttat ttataaccct tctttcactt tttgaaaaat
     5521 tatattcatt aactaaaatt ctaagactta aacattcatc acaatcttta caaatagggc
     5581 gtgaaaaata cctaccaaaa cgacgccaac ctcgttttat tagcccatta ttgatttctt
     5641 tagggcaatt ttcaatgtat ttatactcta ttcttgagcg tttatctttt aagtaaggac
     5701 actgatcttc aagagtacaa aaaccaatct caagcattaa attttcttaa tatctgcatt
     5761 tttgataaat tcggaaaatt catcctgtag tttttcttgc tttaagaaaa tttcttgcat
     5821 ttccttatct atgtttgttt cttgattttt ttcgcgaata tctttagcta gtttttctaa
     5881 attttttaca cttgcaccac tcttgcttga cttcttcgct aattttggag tattggcgtt
     5941 agcttgcatt tcttttttaa tacttttaag actgtctaaa aaatccatct attattctct
     6001 actttctcgt atttttttaa gcgtagcagc tattgcagct ataacttctt ctttattttc
     6061 ttgatgacga tcttctgttt tttctaataa ttcttgcata tgtgtttcta tgaaagaggt
     6121 gtctaaatac ccccttctaa attctcttgt ttttgtaata gcaattaaaa atggtattgt
     6181 tgttctaata tcatcaatca caaattcctt caaagcacgc tcaagtttat taaccgctaa
     6241 atcataactt gttgctttaa taataagctt tgcaagcatg gaatcataat aaggcggcac
     6301 agtatagtct ttataaatat gactatcaac cctaacagat ggtccaagag ctgggtagta
     6361 ttctcctatt tttccaggac ttggaataaa atttttccat acattttcag cagtaattct
     6421 agcttcaata gcaaaacccc taggtttaat atcgctttgt tctaagtcca aaatttctcc
     6481 tgctgcaata cgaatttgtc ttacaataag gtcaatacct gtaatttctt cagtaattgg
     6541 atgctcaact tgaattcttg tattcatttc cataaaataa aagcgattat aatcatcaag
     6601 caaaaactct atagttccag catttgtata acctacagcc ttagcagctg ccacagctgt
     6661 aacacccatg gtttttctaa gattatctga aattccaggg caaggtgcta tctcaattac
     6721 cttttgatgt cttctttgga tagaacaatc cctttcacaa agatggataa tatttccgta
     6781 gttatctcct aaaatttgaa attctatatg tcggggatta actacatatt tttccataaa
     6841 tacttcatca ttattaaagt atgttaaagc ttctcttttg caagattcaa aggcattttc
     6901 aagatcttgt tctttatgaa caacgcgaat tccgcgtcca cctccaccac ctgaagcttt
     6961 taaaataaca ggataaccaa tcttctcagc aaaaatttta atttcttcca tgctatagga
     7021 atttaatttt tcagtccctg gaacaatagg tatgccattt ttagccatta acttacgagc
     7081 gatattttta tttcccatct tatggattac ttcagatttt ggacctataa aaataattcc
     7141 agcatcttca caagccttag caaattcgta attctcactt aaaaatccat aaccaggatg
     7201 aatcgcatca gcaccacaag ccttagcaat ctcaacaata cgagcaatat ctaaatatcc
     7261 tcttatagca tccgttccta tgcgataagc ctcatctgcg atttttacat gcaaacattc
     7321 acgatcaggc tctgtaaaaa ctgcaacact tttaatatgc aaatctctac aagcacggat
     7381 tactctaaca gctatttcag ctctatttgc tatgagaatt ttatggattt gattcataat
     7441 ttgccttttt tgttatattt ttattgttaa ttttagcaaa ttttccttac aaaaacttag
     7501 caaaaaattt aatttatttt agttataata aaacttttta aaattttaat tccaataaag
     7561 aaaagttata attataatgg ttgctgataa aagattattt tatttaagtt gtattttaat
     7621 caccatagga atagtatttt catactctct tacagctttt actgttcttt ttcttgacta
     7681 tagcgagttt cattttttta ttcgtcagct tttttttgga attagtggca tacttataat
     7741 gttttttatt tctcgattgg accctgataa agcactttct aaaaaaatta ttttagctat
     7801 tttgattatt tcttttatct ttatcatcat tttgccattt ttaccttctg cattagcaac
     7861 agctagcgga ggagctaaac gctggatacg cttaggccca ctctctatct ctcctgtgga
     7921 attttttaaa ataggattga tttatttttt agcatggagc tatacaaggc gtattgatga
     7981 tagcaaaaaa gctatcagac acgaggcttt aattcttctg ccttattgca tcttagcttc
     8041 tatagttata ggatatattt atatcactca aaacgattta ggacaaagcg taatttcttt
     8101 ctttttgatt ctggctttag ctttttttgc aggagctagt aaaaggcttt ttgcttttgg
     8161 aactttaatc attatgatga taggtataat ggtaattttt agcaaccaaa gaagaattca
     8221 aagaatcgct tcttggtggg gaaatataca agatgctttt ttacctatac ttcctgattg
     8281 gctggcaaat gctttaagag taagtagcaa taccgagcct tatcaaattt cacactcttt
     8341 aaatgctata gcccatggag gaatgtttgg cgaaggctta ggacttggaa cttttaaatt
     8401 aggctttttg agtgaagtgc atactgactt tgttctttca ggaattactg aagaaatagg
     8461 actcttaggt cttggggtta tttgctatat ttatctttgg atgattttaa gaatttttag
     8521 aattgcagga agatgtgaag aaaaacaaga ttttatattt tgttcaggca ttgctttgct
     8581 tttactcttt tcattcttta tgaatgcctt tggtatcatt tctcttacgc ctttaaaagg
     8641 ggttgcggta cctcttttaa gctatggggg aagttcaatg tgggcaattt gtataggaat
     8701 tggatatgtt ttaatgattt caaaaaaggt taaattatga caatagttct aacaggtggc
     8761 ggaacgggtg gacacctagc cattgtgcga tgtttactag aaagtgcgat taaaaaaaat
     8821 atagagtgtg tttatatagg aagtcaaaat ggtcaagata gagcttggtt tgaaagcgaa
     8881 actcgtttta aagcgaaatt ctttttaagt tctcgtgggg ttgtcaatca aaacaaactt
     8941 ggaaaaatca attccttact ccacacattc aagcttagta aagaatgtaa gcaaatcttt
     9001 aaagattatg atatcaaagc ggtttttagc gtaggaggat acagtgctgc tcctgcttct
     9061 tttgctgctt tgttttcaca cttgcctctt tttatacatg aacaaaattc aaaaagcggc
     9121 tctttaaata tgcttttaaa acctttcgct acaaaatttt ttagcgcctt tgaaaaagaa
     9181 attagccctt atcctgtagc agataaattt tttgataatg ctaggattcg caaagaatta
     9241 aaaaatatta ttttcttagg aggatcacaa ggagctcatt ttatcaacga actagcttta
     9301 aatttagcac caaaacttca agaacaaaat atcaaaatca tccatcaatg tggaaaaaat
     9361 gattttgaaa agtgcaaaaa acattatcaa agcttaaata tccaagctga tatttttgat
     9421 tttagtttaa atttggaaga aaaaatgaaa aatgcagatc tagctatatc aagagcaggt
     9481 gcaagtactc tttttgaact ttgtgctaat actttgccca ctatttttat accttatcct
     9541 tatgcagcta aaaatcatca atactttaat gctaaatttt tacaagataa agctttatgt
     9601 caaattttta tgcaaaataa cacctatcct gatgaaattt taaaagctat attcaagcta
     9661 aatttagaag atatttctac aaggcttaaa gatatggcac aaaaaaatgg cgcagatatt
     9721 ttgcttgaaa aggcattaaa gcttatcaaa taactttgct tttataggct aaatatccaa
     9781 aaatattaac aagtatgccc acgataaaaa gtatacaaat agagcttgta aaatttccaa
     9841 acatatcatg gaaaaatcct atgatccatt gcccttgcgc tgcgattaaa tatccaaacc
     9901 cttgagcaaa agccgaaagt cttgcagcta tttttgcatt agaacttttt tgagcgataa
     9961 aaagcaaagc gatgccaaaa acaccacccc aaggaaaccc cacaataaat gcagcaagca
    10021 taatcataaa ccgagtatca aatgcaagta aaattccaaa agataccgca tacatcgcgc
    10081 acaatatagc tatataaggc gtatgtaaac tctttttaag ttttcctaaa agcaagggac
    10141 caaaaagaga gattggagcg gctacaagtt gagaaaaaag taccatattg gttgcaaaat
    10201 ctttatcata gcctttttct acgattattt gcacatacca aaaaaacaaa gaataagcca
    10261 aaaaactttg aaaacccata aaaagagtga ttttccaagt ggttggattt tttaaaagat
    10321 tgattttttt atgagctttt ttcttaatac gaaaaaatct accattttta gcttggggat
    10381 aataaatcat taaggcaata aaagaaaaaa ccgaccaaaa aaccatagca cccgctaaat
    10441 caaatatatt taacaaaggc atagataaag caattcctgc tatagaagaa atgcttaaaa
    10501 caagactata aattcccatc atacttgcca tttttttagg aaatttttcc ttaataaaac
    10561 ttggcaataa cacattggca atagctatac cacaacctat accaagcatt cctaaaaata
    10621 aaccataaac acctaaataa gaacgaataa gttctgcgat aaaaataaga aaaattccaa
    10681 caataatcgc acgaatagga gaaaaataac ccactataaa agaaatgcta ccaaaagcta
    10741 tcaaaggaag gctagtaagc acacctgcaa gagtggaatt aagattatac tcatcttgga
    10801 taatatcgat catgggtcct atcgcagtaa taggagccct aaggttaaat gctacaatta
    10861 tgacaatagc aacatttaac caaaaaattt ttctaaaaga aagcattaaa tccttaattt
    10921 ttaagttcta ctttaagtat tttaccttct accatcttag gaatccataa agtatcaccc
    10981 tctataaaga tatctgcagg acctttgata gaaggcaaat caagctttaa tgctttatca
    11041 tcttctaaac gataaatcac tccgtttaaa ttttcacccc aagaacttac aagcaaggca
    11101 ttttcataag gaacgattcc atcataagct tctttttcat ttttaatcac gcttagtttt
    11161 ttgtcattta aatcataagc cattacaaca ccgccactag caccatctgg atgatatcct
    11221 gctataaaaa gcttatcatt ttttctatct aagtaaagtc cattaggacc gccaaattta
    11281 gcgatatcaa gttttaataa ctcatcatat tgcttagttt ttaaatcaac ctttaaaata
    11341 agccctgtgc cagtatcgct aaccaaaagc gtattgtcgt ctaatttttc tatgtcattt
    11401 aaaaagattg cacctttaat aggtaaatta aaaatttctt ttttagtttt aagatcaaaa
    11461 ccgcgtaaaa catcgatatc taccacataa agagtttttc caatctccat catgcctttt
    11521 ggtgcattaa gatgggttaa aaatttatat tctagcactt tgccattttt atcaagctta
    11581 gaaataaatc catcattatc tttcgccaaa ggttcaagtt tttctcctac attagataca
    11641 taaacatagt ttttatctac aaaaatactt tcagggcttt taaaaccatc aaattcttga
    11701 tattttaatt cacttgcacc aagcaaactt ccaagaagcg ctaaacttaa aacatatttt
    11761 ttcatatttt ctcctttatt taaaaatatt ttcattgaat tatatttatt tagataaaaa
    11821 aaatgtgcta gttttttgat aaaaaataca agttttttgt tttttgatat tgcttaggag
    11881 tttgctcata tttctcttta aatctttcga taaaccaagc taccgaagaa aaagcgcact
    11941 cattagctat ttcattgata ttttttttag aaaatttaag taaaatcttt gctttttgca
    12001 accttttttc atctaaccat tttttaggac tttgtccaaa acatttctta aattctttag
    12061 aaaaagttgc taaatctaat ttcgcaaaat tagacatttc atttacgctt aaaaattctc
    12121 taccacaata ctcaaaaagt tgggaaagat caaggcgaaa ttcttttaaa attcctgata
    12181 aaaaactaat aaaataaata ttcttattta aaagcaaatg taaaaaaatc tcttcaaatt
    12241 tcaaactcac tataggatct aaaatttgcg tattttcttc aaaatgcggt gaaaaacttt
    12301 ccaaaattcc ttgcaaaatc ttatcatttt ttacccaaaa aatttcatag ttttgaaact
    12361 tttgatctag tttaaaaaaa tctttatact tataaataag ctcaattaaa aatgcattgt
    12421 caaaaaaaaa taaataagct tcataaactc ctttactaag tcctacattg cttaaagtat
    12481 agctcccagc ttttaaaaac aaagtttcat aagagttaat cttataatct tttgatgcag
    12541 tgtgtaaaat tttatatcct ttgcgaacaa aagttaaaag atgacttcct acattaacaa
    12601 aagtagaatg cgaagtatcc gtttgtgtat atttagcaaa agtgcaagat ttaatttttt
    12661 tataattgac accttttaat tgctttaaat cttctggtaa agaaagaatt ttattcatcg
    12721 taaattttgc ctacattcta aaagatactt tttaagatct ttttctttca ttaaaatttc
    12781 acgcatgcaa acacctacta catttatatc tttaaaattt tctatatttt gagcattgat
    12841 accgcctata gcataaagtg gaatttgact aaattcaagc aaggatttta aaaaatcaat
    12901 ccctttaggt tctaaaccca tcttgcaaga actttcaaaa atatgcccta caaaagcata
    12961 atttacctta tagctcatcg cctctaaaag ctcttctttg ctatggactg aagtaccaag
    13021 tatatgaaaa tattttgtta atttaggttc ttttcttagc aaagaaagcg gtgcgtgaaa
    13081 ataacgatgt cccaatttta aacactccct atcaaaaaaa tgcaaaaaac aagtcacttt
    13141 ttgctttgcg caaatgctta aaacttcttt tgctaagtca taatactcaa attcgcttaa
    13201 atctttttct cttaaaacta tagcatctac cttagcctta gcaagttttt caatctgctt
    13261 taaaaagtct atttctacac attttctatc gcttatggcg atgatttttt tatcccacat
    13321 agatactatc gctcatcaca gcttgtaaat tggatctttt aagcatagct aaaatttcat
    13381 ctacgcttct atcatctgaa atttcaaact gctcatcacc ctttttctca cccttatgct
    13441 cacctatacc cacactcact cctgcactca ttttagtagc accaagcttg ataacctcat
    13501 ctctaaaacc tattctttca cgacttgaaa tggtaatgcc cgcaaaaggc aaaaagagcc
    13561 tataagcaca aagtacttgc aaaaggcgtt tttcacttac atctttagga tggattttgg
    13621 cattattgat aataggtctt aaacgcggca ctgaaataga aatttcagca tgcgaataag
    13681 cttgttgtaa aaaatgtgca tgaagcgccg tagcaagagc gtcttttcta aaatcatcta
    13741 tacccaaaag tgccgcaaaa gccactccac gcatacccgc ttttaaagct ctttcttgag
    13801 cattaaagcg ataaggaaaa atgcgttttt caccagctaa atgaatttta gaatatttta
    13861 gaggattgta agtttcttga aaaacagtca cataatcaca acccttttca tgcaaaattt
    13921 tatattcatc ttcattcata ggataaattt caacgcccac aaccttaaaa tactctctag
    13981 ctattttaca agcatttgct atatattcta cacttgcaaa ctccctgccc tcgcctgtta
    14041 gcattaaaat ttcttctaaa ccacttttag caatggcttg catttcttcg tgaatttcag
    14101 cttcatttag cttagctctt gcgattttat tacctttttg aaaaccacaa taaacacatt
    14161 tagaattaca ataatttgac aaataaagtg gggtaaaaag agagatagaa tttccaaaat
    14221 atttttgctt gactttagcg gatttaaagg ctaattcttc tatgaaatct tctgctgcac
    14281 ttgaaagcaa ggcttttaaa tgctctatgc ttaaatgtgt ttgatttaaa gcatttttaa
    14341 catctttagc gctaaattga ctctcatcat agctttgaac ttgacttaaa accttattta
    14401 aaatttcgct ttttatttcc tgcatgtgag gtaaatactg catataatct tgcataatca
    14461 atcccttaaa aagcctgtta atggagaact tgctttagct ttactcacac ttgccaaacc
    14521 tgctaaaaaa gccgctcttc ccgcatttac tgccaaagaa aacgctttag ccattaaagc
    14581 aacatctttt gcttcagcta tggctgtatt taccatcacc gcacttactc ccatttgcat
    14641 agcttcacaa gcctgtgaag gacttccaat acccgcatct acaataatag gcaaatcaat
    14701 ttcattaagc aaaatttgta taaattcctt agcacataag cctttattgc tcccaatagg
    14761 tgctgctaaa ggcatgatag ccgcagctcc tgcatcacgc atagctttag ctgcgtaaag
    14821 atcagcatgc atgtaaggta gaggtgtaaa accctcttta gctaaaagct cgcaagcttt
    14881 aatcgtttca taattatcag gcagcaaata cctactatca cttatcactt ctatcttgat
    14941 aagttctcca caaccaagct cttttgaaag ccttgcaatg cgtaaggctt cttcggcgtt
    15001 tcttgcgcct gaagtgttgg gtaaaagtgt gatattttta gggatataat caagtatatt
    15061 agcaatttcc cctgtatttg cacggcgtaa ggctagagtg ataatctgtg ctttagcttc
    15121 ttctatagct gattttataa gctctagcga atattttcca gaacctaaaa taaatcttga
    15181 atcaaactcg tatttgccta tttttaattt atcgtttttt aaattttctt gcatttttac
    15241 tccttatttg ctaaaagctc taaaacaagg ttactttgat gtcctgcgca aatatttacc
    15301 cttggcgcca taagtccatt tcctagctta gcaccattta ccaaatcccc acacacatag
    15361 aaatttttag caatttttct tgtttgtatg ctgttgctat caccatagcc cgcaagccct
    15421 gaagcacaga ttaaaacact atctttgtaa aatctatgaa aattttgcgc tatcatcgct
    15481 tttgcgatag cactatcaaa ggcttcacaa actatatcta tatctttaaa caaagatttt
    15541 aaattatcct catcgatttt taaggtacaa atttcaacgc tgatataagg attaatttcg
    15601 ctaatttgct cttttaaagc ttcggtttta aatttaccca aatcacttac acgataagcc
    15661 tgacgattta aattactagg ctcaatcaca tcaaaatcaa tcaactttaa ataccccact
    15721 ccacttcttg ccaaatttat cgctatatgt gatccaagtc cgcctaaacc acacaccgcc
    15781 acgcgcccat ttttaagttt atcgtgaagc tttggtgtat gtcttgctct catcatagca
    15841 tctagtgcgt cttttggagg taaagtattt ttttctatac aaaaaagctc atcattttca
    15901 tttaaagcga tattctcttt tgttgcaaaa ccattgataa tccatacatc attttcattt
    15961 ttgctgatat tttcaaaaaa ttccaaactt gttttaaagt ctgtatcaag ttctttgcca
    16021 ttgaatttta ctctcatcat ccacctccta caaaacttac gatttcagct ttatcgtttt
    16081 cttttaaaat caaattttca aattcactct taggtataat ctctccattt aattccaagg
    16141 cgataagttc tattttcaag cctttttctt tgataaaatc cataaattta agctctttta
    16201 actcaagctt ttgtccattg ataatcattc taaaccttta aaaattttct atcaagtctt
    16261 taaaaacaag acaaagtttt tcaaattctt ctatacttac cctttcatca atagcgtgaa
    16321 ttctatcatt acaaacccca aattctacta cctttacacc gtattttgca aaataccttg
    16381 catcacttgt accgcctttg gtattaagct ctggcacttc atgagtgatt ttttgaacac
    16441 tttcattcat tttttgaacg attttattgt cgatatttgt caaaaaagct tcgcttgatt
    16501 gttttagctc taactcatag tttaaaccat gacaaatttt ttctacataa ctttttacat
    16561 cttctaagct tgtatcaggg gaattgcgaa cattaaacat aagttttaaa tcatttggag
    16621 taacattaca cacccccata cctccacgaa tatcagttat aacgattttt gaaggactaa
    16681 attcagcact tccaggatca agatcaaaac ccgctaaaag ctttaacact ggtgcaaaat
    16741 catgcacagg attgatacat ttttcaggat aagcaacatg cccttgtttt ccacggatta
    16801 aaagttttcc attgatagaa ccacgacgcc ctattttaat actatcgccg atttttttaa
    16861 cacaggttgg ctctgcaacc acagcataat caggtagcat atctctttct tgcatccatt
    16921 ctaaaacagc cttagttcca tatatagctt cgccttcttc atcacttgtt aaaataagac
    16981 taagtctagc tcctttaaaa tccgcattct ttaccgcatc tacaaaggct gctactccgc
    17041 ttttcatatc ttgagcaccc cttgcataga taaagccttc tttttccata ggcacaaaag
    17101 cattattact ccaaccctcg cctgcaggca ccacatctac atgcccacca aaagctaaat
    17161 gctcgccttc atctttaaat tttttagtga gtaaaaggtt tttaatgcct tctttttcta
    17221 taaaaaaagc ttcaaaatca ctcagttcca tagcgatgaa atttaaagct ccatcatcat
    17281 ttggcgtaac agatttaaat tttaaaagtt cgattaaaaa ttcttttgca ttcatttttt
    17341 atcctaagaa agttttatat aataaattaa gagcaaaata ctctataatt atagctgaaa
    17401 ttatattgat tataaaaaca acttttgcac taaaaacatg actatatctt gccaccacaa
    17461 aggctaaagc acttacccaa aaaagtatag ccacaacaag ccctaaagtc atcaaataag
    17521 catgatcgct gcttaaaacc acacttgcag cactaagcca aaatcctatc acaaaaggat
    17581 ttgaaccatt taaaaaagct cctttaatat aacttttcaa aagactttct ttaaattctt
    17641 tatgctctaa atttaagctt tctttctttt ttcttagcat caaatacgcc atataagtta
    17701 aaaaacaaaa accaaaaatc gccaaaaaac gcataaaaat gacattgtct aagaaattta
    17761 aaagcccaaa ttgaagcaaa aaaagataaa gcatatctat actaaatgct ccaagtccta
    17821 cagctatgga atttttaaaa gcttttagtg cataagttaa aatcaaaata tttacaggtc
    17881 caaaaggcac actcactcca aagcccaaaa aaactccact taaaaaagaa tcaaacatta
    17941 ccatctttca taaaattttc tatatcaagt gcgattttat caatagcgct tataatatct
    18001 tctatataga ttttatcaaa atatcgctct aaattcgcat ctttttcgta gatatttaaa
    18061 atactttttt cacacattga agcataacgc cctacaggca aaaccgcccc acttgtgcct
    18121 atgctgataa aaagcgaagt ttgatttagc aaagaataaa gcgtagcata agcaggagct
    18181 tgctcttcaa acatgactat attgtgtctt aaatccttac ttttgcattt tggacattgt
    18241 ttatctgtga ttttttcata gcctatatta aaaattcctt cacattttag gcaacgaagt
    18301 tcaggcaaaa atccatgcaa atgtactaca tctttacacc ctgcacgctc tagcaaatca
    18361 tctacatttt gcgtgatgac aaaaagattt ttaccccatt tttcttttaa ttgtgcgatt
    18421 ttttcatggg cgtgatttgg ctttacattt tgaagttgcg ctcttcttgc atcgtaaaaa
    18481 tcaagtactt ttttaggatt ttttctaaaa cccgttacag aacaaacctc catcacatcg
    18541 tattcttccc aaagtccatc attgtctcta aaagttttaa gcccacttgg agcagacaaa
    18601 cccgctccgc ttaatatcat aatgtttttc atcgctaaac cttataaaat ttacaaagtt
    18661 tagcgaaaaa tgctttaaga aaataaatat ttttgcaaga ttttttcttt ttctttttct
    18721 aatctatcaa gttctatttt atattcattg atttttttct caatcttgtc agttatatct
    18781 gctatttgat cttgaaattc taaagaagga agtttaaccc ttaatgcttt tattctatct
    18841 attgaagctc taagttttct tgaaaatcct tgttttttac cagcttcatt taaaataaaa
    18901 cttatgtatt tagcatttat ttttgtatca tcaaccctta ataccccaca atgatcagtt
    18961 ggataaaact ttttattttt tggtataaat cccaccatcc aatctccatc tataccccac
    19021 aaaacagaat cattatcata atcttgcaaa atttctttat taacaaatcc aaatacctcc
    19081 aacacatttg cactataaac aggaatttgt ccattttcaa gcagctcatt atttaaaact
    19141 ctttttccaa tacttagttt aaaaattgga tttgataaag catattcttt aattgtttta
    19201 ttaaatgatg ataaaaattc actatccaaa tttattttac acaaattatt aattttatct
    19261 aaaatagaat ttagttcata ttcttgattg tcctctataa taccacattt ttgaagcatt
    19321 gctttgatta ggttttgata ctcttttata ctcaagctta aagtattata ctgctcttct
    19381 accttttcac actctgctac gatttgtttt tgaatttcaa gcggtggaag tgggatttta
    19441 aaactataaa aaatattagt atcaaactgt ggatactgtt gtccttgttt atatagtttt
    19501 tgtccgcaaa tttctaataa aatatacaaa aaatcaaaaa taatcttgct tttatcttta
    19561 acactcaaaa tatgattatt tgctgaaaca aatttacctt tatgtttttt aatatttgca
    19621 tatcttgcca ctcctaaagt aattacttca ccttcgttta taaattgtcc agctgttttt
    19681 tcatctgtcc accattcgta gtttttagaa cttggtaaaa gttttacatt tccactgttt
    19741 aaattcattt tttcgatttc tgtcgcacta gcttgatttc taattttatt taaatcacac
    19801 acttccccta atctcaccaa ctcatactta gaattcttaa aaggatttaa ctcatctctt
    19861 gattttacgt ttaaacttat agctttatta aattccactt tttcaaaatc catcatatca
    19921 ataagcctcg ctttaccagc atagccttgt aaatcttttg gtatatcgct aagagttttt
    19981 aaaaatgctt tacaaattaa agtattaagc ttagtttcat tttgcggatt gcctctttca
    20041 aaaagtgggc tcaaataagg ctcatgcaat tcttttaaac cttcatcacc ttttctattg
    20101 ctccactcat aacctaaaaa tttcttttgt tcttttatat cacttggaga ttttatgatt
    20161 aaaacttctt gattaagact tagacaaaaa taaagcaatt tatccttttc tattgcttga
    20221 gtataagcta aaaaggcttt atcttctaaa tcttgcttat ctttactttc tttataaatt
    20281 ttagattctt taagtttttt ataatcactt gtttgcctaa atgcattgcg ataatcttta
    20341 aaggcttcta gctctgcaag tttagaatct aagtttccat ttaaaaaatt gctataaagc
    20401 tctttatcaa attttctaaa atcacaatac gcacttagat aattttgata aaagttttca
    20461 ttgtctttta aattttcagc ttctatgcgt tctttaatca aactataatc ttgagaaata
    20521 agatgatttt cttgtttaaa agtttctttt ttgcgtaaaa ataaaataat cgtatttgtc
    20581 cctgttgctc caaatgtttg attacctagc tctacaatgg caataaaatc aaaattttga
    20641 aataatattt ctcttgtatt tttataaata gaatctttat ttaaaataga acttggtaag
    20701 ataatagcag ctttagcatt atcatttaaa atttgatttg ctcgctcaca aaaaaagcat
    20761 tcgatagaat tatttgtttc tatgtttata tcatcgttaa aaagtttata ggtattctta
    20821 gatttatcac ttaaagtttc taaaaatcct tttacagaat aaggcggatt tgctataagc
    20881 aaatcaaaac tatttgattc tatttgtggt tttgcttttt ctccttctaa attatttgta
    20941 tttgctaatt caaaagaagc aagtgcatca gcgtataaaa tattgatttc attttgtcca
    21001 tacattgcac ttgatacctt agaaacctta cttaagcgat actctttttc aataccataa
    21061 atatttttat aatgctcttt aagctcatct tctgttagat aacgcttaag ctcattggca
    21121 taggtgttta aaaaatgtcc agcaccacaa gcataatcaa tcacccttaa agctttagag
    21181 tttttgctta acatttcttg aagcggtaaa gaatacataa taaattcaca aatttgaata
    21241 ggggtaaaaa actgcccttc atcttgcttc ataccttttt gcaaaaaaag ttcaaaaaga
    21301 ttgcctaaaa attgatttgt agagttttgg gtaagcttgt aatttgcaaa aagctctact
    21361 atttctttta atacaagtgc attttttaag aataattctt tattatgcac ttctaaaaat
    21421 gcaaaatcat tatttgaata aaattttaat tctttgatgt aattttgcat tacttctttt
    21481 aaagttttta tctttaattg cttaaagtct ttttctatat cttcattaga tacaaaggta
    21541 attttctctc ctaagaattc tttcatagct tctttataaa gccacattaa tctatcttgc
    21601 atatttgcat aagtatctgc cattacacca aaatatccaa atttgagatt gtttttatta
    21661 aaagtttcat cataaatttt gcaaagaaaa atatttacaa gtttatcaaa ggcattttcc
    21721 ttgcctgata tattatgctt gcgtaaaatt tttgcaaatt cgtgatattt accttcttct
    21781 ttaagttcct taagattatc aaaagttgga gtaatttcta aaattttata agcattgaca
    21841 ttttcttcaa aaataccttg tttaaaatat tgcagttcat aactttcttt ccaagtttta
    21901 aaaagttcta tattgttatt agatttttta taagaatttt gtaattcctt ttcttttaga
    21961 tattcttcgt tatcgtaagc ttgtatgatg taatttttat attctaactt atcgctaaaa
    22021 tcacttgtat aaagacaaag atattttaca cctttttctt gctgaaaata agaaaaaagc
    22081 tgcccgccat cttcttgcat tctattccat tcttttataa attcactatt tttagaatct
    22141 gtggttttac attctataat caaataagga ttgttttcat tatcctttac taaaatatca
    22201 gccttaccac cttttttatc cctgccaaga ttccattttg gctctaactc taaatattca
    22261 gccttgtaac ctttttctaa aagtctatgc acacattcaa aaactacaaa attttcaggg
    22321 tgtgaaaaat tagaagtagt tttatcgtga atttttattt cttttgggta attaatactt
    22381 tggtttttat aatctattaa aagtgtgtaa ttattgattg tttttacata attttcattt
    22441 ttatttttaa agcctaagtt ttctagaact tgttttaaat tatcttttgt aatcatttat
    22501 ttccttataa tctcaccacc ttagcaccaa agccaccttg attgatcggt gcgtcattaa
    22561 agcccttgac acttttatga gttttcaaaa actctcttac agcaaaggca agctttcctg
    22621 ttcctatacc atggtaaact aaaacttcat caaagcctgc aagcaaagca tctgaaataa
    22681 atttatcaag ccttgaaata gcctcatcac tcctaagtcc atgcaaatcc aaagttacac
    22741 ttagattgct tggttttgtt acactaatac ttgtttttgg acttatttta ggtttaggag
    22801 tacttttttt aagcagtttt aaaggcacac gaagtttgat cccatcgctt tcaaccatag
    22861 catcgttttt agaaatgctt atgattttac ccttaatttt ttcatatttt acaaaatccc
    22921 ccacacgcaa ttcttcgttt tgctccatac ttggcaagat gatttctttt ttaagttcat
    22981 tggctttatt aaggcttctt tgcttatctt ttgtgtcttt aagctgtatg gttttcttag
    23041 cttcttctat ggctttgtga aatttaaatt ctaaatttct caaactcgtg cgaaattctt
    23101 gttcattttt ttctttttgc tcttttaaag aaagtaaaat ttcatcgact ttttgctctt
    23161 ttttctcaac attttcaagc ttagctttta gttctaattc aagattgata tttttaccca
    23221 caagctcttc taaattttct ttatcctcgc cataaagctt tttagcctcg ctaactaaat
    23281 tcggcggaat ctgataacgc aaagcggttt caaaggcata agattttcct atagtacctt
    23341 ttaaaaactc gtattttggg cgtgaaagct cttcatcata taaagcagca atgagttcaa
    23401 cttgctcatt ctttgctaaa agcatagcaa ggcgtttgtg gtgtgtagta atgatgattt
    23461 taagattatt agctatgagt tttgaaatta acacactata caaacaagcc gcttcttcaa
    23521 aatctgttcc aagctctatt tcatcgatac ctaaaagcaa atttttctta gaaaaaagtc
    23581 tagaaaaatg caacattctt cctgcaaaag ttgaaatgtc gtttttaaca ttttgcggat
    23641 cttctatgat ggcatcaaat tctttaaaag taccaatttt actttcactt gctttgatat
    23701 gcataggcaa aagatgttta gctaaaaatg ctgcgcttag catggatttt aaaagcatgg
    23761 attttccgcc tgcatttacc cctgtgatga ttaaaacttg ttttttaaat tccaaactca
    23821 cgctttttgg attttttaag gcaggatgag cgaaattttt aagcactaaa tctgtacttt
    23881 gatcacacaa aacaaattca aaatcctttt ttttagcaag caaaacccta gcactataat
    23941 gatcaaaaag atcaaaggct gtattgataa attttaaaaa aggtaggttt tttgctaaaa
    24001 aagctgagaa atttttagcg tattcataat aaatttcttc tttttgattt ttgatttttt
    24061 ctatatcatt ttgcaaattt tcaacactta aaggcacgat ataaaagcca ccgccattac
    24121 ttctgcctat gatttttgct ttaatagcgt gattaaaccc gcctcttaca agcaaggctt
    24181 caagattgtt tataagatgg atttgtgtat cgataagata aggcattaaa gcttttgtat
    24241 agcaaaattt cttaaactca gctattatgc tttcattttt taatcttaga gcggcattaa
    24301 gatttacaag tctttcatct aaactttctt ttaactcccc tttttcatcg aaattcaaac
    24361 aaagctccaa agccccgcta acaaattcta tcttttgtag ccaagagtct aaatttgttc
    24421 ctagttttat tttttttaac ttttcaaaat aacgaaaaat ttttacaaat tcaaaaattt
    24481 catctaaatg taaaattcct tgcttgctta aatgaactaa ggctttatca agattgctaa
    24541 gctctggtat agtaggaaat tccacctcgc aaagctcatg tatacgttta aaatggagat
    24601 tagaatctcc ttgcaaaaaa atctccttat ctcttgcaaa aagggcttta aactcttcta
    24661 aatagctgtt taaatcaagc tttgagatca attcttcttt tgtatcattc atcatttaac
    24721 ctacaatctt taatatctat gattaaagaa ttaaaacttt gattattatc ctttgaaata
    24781 aaacttcctg taccaaattc ataattaaaa tacgccttag aaacattgat atctttacat
    24841 aaaatatttt tattttgatt aaaagctacg ataatatctg ttcttaaatg acttttttgt
    24901 gtgttttcaa attcaaaaaa tactgctaaa acaataaaaa tcacaagtaa aataccaaaa
    24961 aaaggtttag tttttttgcc taatttttca cgcaaagcaa aagtgattaa ggctaaaatt
    25021 aagatgatta aaagatataa aaaaaaccta ctcattcttt tgccttaatt tgttgctgat
    25081 atctcctgcg ccaaaaccta taataagccc ttcttcaaaa acttgcccct tagaagccac
    25141 caaaaattta ccctctcttt tgatatcttc tacaaataaa gccttaggaa aaaccgcttt
    25201 taaatcaagt tctataggct tttctcctgc agcataaaca ggtaaaatta taagctcgtc
    25261 tacaccttca aaagcctttg caaattcctt taaatttgca gccaaacgcg tgtagcggtg
    25321 gggttcaaag atagctgtga ttttcttata tccgcctaat tttgcgtatt cttgtgctgc
    25381 acttaaagtc gcttttattt cggtgggatg atgaccataa tcatcgatta aaaccaaatt
    25441 ttcatcagca tgtaaaatat caaaacgctt tttaatacct tgataatttt taagcctagt
    25501 tcttatcgtt tctatatcta agaaatttaa agccgccaaa atcgccaaag acgcatcaag
    25561 ggctaaatga tatcccatac caaaaacttt aaactcacct aaatctttta actcaaagct
    25621 tgtaaaaggt ttgaaatttt ctatacacat ggtgcagttt ttgatatctt tacttggata
    25681 aagcttgatt gactcatttt tataattttt caaaaactca tcttcagcat taatcacgcg
    25741 aattttagcc gtatctaaaa actgcgtata agcataatgg agttttgaaa cttcattacc
    25801 ataatgatct aaatgctctg cttccgcatt ggtaactata gccaaataag gatttgaatt
    25861 taaaaaagaa ctatcgctct catcagcttc aaaaacaagg ttttgacttt cctcataaat
    25921 catatttgaa ccaaattctt ttaaaatcgc tccgatgatc acagaagcat catcaagtaa
    25981 agaagctaaa atacttgaag tcgtgctttt tccatgtgct cctgcaactg caaaaacacg
    26041 cttatcttct aaaataagag gtaaggcttc cttgcgtgaa agacatttaa tgcctaattc
    26101 tttagcgtgt ttaaattcag gattttcttc tttgatagca gcagaataaa taactaaatc
    26161 tttgtttaaa atattgtctt tatgatgagg gatactgacc ttaacccctt ctttttctag
    26221 ttcgttagtg attttacttt ctttaagatc acttccgcta attttaaaac ctttttcttt
    26281 taaaaatctt gctaaagcgg aaattcctat accgcctatg ccgataaaat ggatattttg
    26341 catcatttaa acctttatac tttaaaggct aaattttagc acttttttac taaaaagaaa
    26401 atataaatcc tattttgaaa tgcctaaacg ctcggctaat tgatataaat ttaactctct
    26461 ataaaattta tcaaagtctt tagtataacc atcaagatta aaagct
//
LOCUS       DAPOLW010000005        24771 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.005, whole genome shotgun sequence.
ACCESSION   DAPOLW010000005 DAPOLW010000000
VERSION     DAPOLW010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24771)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24771)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24771
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.005"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..335)
                     /locus_tag="ROE18_000139"
     CDS             complement(<1..335)
                     /locus_tag="ROE18_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDX3650364.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYDFNK
                     GVLVQPSFLGIDNEFLLQSIEKDENIKAIVVVDENIKFDELKKLKERKACGVRLNLIG
                     KELPNFKSMV"
     gene            complement(346..1638)
                     /locus_tag="ROE18_000140"
     CDS             complement(346..1638)
                     /locus_tag="ROE18_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HDX3650365.1"
                     /translation="MIMVFLIISSIIVAIILGYITRHNVGIFAMIFAYIIGAFFMDLA
                     PKKIIAFWPISIFFVIFAVSLFYNFATVNGTLEKLAGHLMYRFANHPYLLPFVIFVVS
                     AIIAALGAGFYTVLAFMAPLTFLLCDKIGLSKIAGAMAINYGALGGANFMTSQSGIIF
                     RGLMENSGIEANEAFVNSSIIFAFTIILPIVVLSFFVFNAFKNNIKISVISKPDPFDY
                     KQKTTLILMFMMIVVVLIFPVLNIIFPHNETISYFNKKIDIAMIAMIFVAIALFLKLA
                     DEKQVVALIPWGTLIMICGVGMLISIAVEAGAIKLFSDLVENEINVIFIPLIMCAIAA
                     LMSLFSSTLGVVTPALFPIVPSIAASSGLSEVLLFSCIVVGAQASAISPFSSGGSLIL
                     GSCPDKYKEKLFKDLLIKAVPIGFIAAILATIIMSFIL"
     gene            complement(1757..2761)
                     /locus_tag="ROE18_000141"
     CDS             complement(1757..2761)
                     /locus_tag="ROE18_000141"
                     /inference="COORDINATES: protein motif:HMM:NF022646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HDX3650366.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLTLEINLLAKENDKAEIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLHKNDFVKFFKAYLPNLEAKEPATLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNSCDENLKILLRNNATEHFDKAIAHIEDDYLGSHWLGSFALLAMDVDIL
                     "
     gene            complement(2771..3724)
                     /locus_tag="ROE18_000142"
     CDS             complement(2771..3724)
                     /locus_tag="ROE18_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HDX3650367.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPYLSFFENKNATLMALIIGIIISSVVACFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            complement(3711..4403)
                     /locus_tag="ROE18_000143"
     CDS             complement(3711..4403)
                     /locus_tag="ROE18_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HDX3650368.1"
                     /translation="MEWLLLASIPLIVLGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
     gene            complement(4563..5132)
                     /gene="efp"
                     /locus_tag="ROE18_000144"
     CDS             complement(4563..5132)
                     /gene="efp"
                     /locus_tag="ROE18_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HDX3650369.1"
                     /translation="MASYSMGDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDDDVGE
                     AKKWMLDGMMVDVLFHNGKAIGVEVPQVIELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            5246..5566
                     /gene="rnpB"
                     /locus_tag="ROE18_000145"
     ncRNA           5246..5566
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="ROE18_000145"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(5564..5839)
                     /locus_tag="ROE18_000146"
     CDS             complement(5564..5839)
                     /locus_tag="ROE18_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650370.1"
                     /translation="MKQWLSDFKLALIQEDVNKLENLLDELDMKAFIKNLAKESPSED
                     FLKENANDVFYQVQALLQEAVILIEQKKKTKAVEIQKFQKALTYFKS"
     gene            complement(5820..6206)
                     /gene="fliS"
                     /locus_tag="ROE18_000147"
     CDS             complement(5820..6206)
                     /gene="fliS"
                     /locus_tag="ROE18_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HDX3650371.1"
                     /translation="MQNNLAYNAYSQNQVGIESPQKLIEMLYEGILRFCARAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLNYEKGGEVAHYLSGLYTREIQLLSLANLENNEDR
                     INEVINVTKGLLEAWREVHNNETVAQ"
     gene            complement(6218..8149)
                     /gene="fliD"
                     /locus_tag="ROE18_000148"
     CDS             complement(6218..8149)
                     /gene="fliD"
                     /locus_tag="ROE18_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HDX3650372.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSQGLANDSGFINANLAGTTDLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDAQGQYQSDPEA
                     EKIFSNLGWELDKTTQTIDPAKDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTV
                     TDLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGT
                     KGTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAG
                     TLSFDSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKTGSLSKYLNSNGGNTNG
                     LAFKPGDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKV
                     ESYNQNNVTGFRLNFSGDGSSDFSIKGDGSILKELGLSDVNITSKPIEGKGIFSKLKA
                     TLQEMTGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKL
                     NQQLNTVTNMINAANNSNN"
     gene            complement(8152..8517)
                     /gene="flaG"
                     /locus_tag="ROE18_000149"
     CDS             complement(8152..8517)
                     /gene="flaG"
                     /locus_tag="ROE18_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella length regulator FlaG"
                     /protein_id="HDX3650373.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASLNIQTDRSQSQGGDDGQ
                     QRGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
     gene            complement(8674..10476)
                     /locus_tag="ROE18_000150"
     CDS             complement(8674..10476)
                     /locus_tag="ROE18_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HDX3650374.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNEKALNLAFGRDYEEVAEEISKLTKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPILKTWEDDAGKFITMGQVYT
                     QNLDKTQNNLGMYRLQMSDKNELLMHWQIHKDGANFYHEYKNAGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPAKITPCENGIFIPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYMLDRFNTKKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLELFKTKVELLNLKQFYKESKSPIVCILLDKKEKIEQSFDKLLEFK
                     KHFRILVFLDAENKLENSYMLVWRVVNNIDAKRDIFIKEERLGVDASAKGEAEGYLRA
                     WPKQTDCTKSVIEDLILRNILENNPDLFNKFEIF"
     gene            complement(10473..11396)
                     /gene="hemC"
                     /locus_tag="ROE18_000151"
     CDS             complement(10473..11396)
                     /gene="hemC"
                     /locus_tag="ROE18_000151"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HDX3650375.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLDIISLRGNVNSRIEKLKNNDF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILELLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDEICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            complement(11393..11782)
                     /locus_tag="ROE18_000152"
     CDS             complement(11393..11782)
                     /locus_tag="ROE18_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HDX3650376.1"
                     /translation="MNYKLSLSPLFVLEIIASILFIVFFGFGNFLFFILLSMIFGAVL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLVFPGIITSVFGIFVFFFGIALKLITK
                     SKYQYTKQEYQNSNEEIIDVEIIEDRK"
     gene            complement(11779..13488)
                     /locus_tag="ROE18_000153"
     CDS             complement(11779..13488)
                     /locus_tag="ROE18_000153"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HDX3650377.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEVKAQNACSALELVDASEEELEKAGLV
                     AGFIGFVGLKDIDFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVAIEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVIGKGLENNEIELIQREDLVKELIKTDELMEILKK
                     KVL"
     gene            complement(13472..14770)
                     /locus_tag="ROE18_000154"
     CDS             complement(13472..14770)
                     /locus_tag="ROE18_000154"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HDX3650378.1"
                     /translation="MYYCISFTHKNTDIALREKLSFSNEAKKSEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNS
                     ISVASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEELSYKRYFFDIAVPR
                     DIDINENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTMNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            complement(14770..15663)
                     /locus_tag="ROE18_000155"
     CDS             complement(14770..15663)
                     /locus_tag="ROE18_000155"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HDX3650379.1"
                     /translation="MQKIDELIKQFLEELGYEPILNMLSNVKSGKKLRSKLLLAIADE
                     SEIAFKICAAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFASIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKASKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            complement(15677..16213)
                     /locus_tag="ROE18_000156"
     CDS             complement(15677..16213)
                     /locus_tag="ROE18_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HDX3650380.1"
                     /translation="MFKISPYLICIFFIFSNVLASEPTFDYTYKFILKKDERASVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
     gene            complement(16216..16479)
                     /locus_tag="ROE18_000157"
     CDS             complement(16216..16479)
                     /locus_tag="ROE18_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HDX3650381.1"
                     /translation="MDFFDEMFNKTPKEKFIEIIQNGNLGALEKVFEEFFADHIAMVE
                     LLEKQGLTEMDVKNFILENGDFIEERQNDIYIELGAKILGHEG"
     gene            complement(16618..17175)
                     /locus_tag="ROE18_000158"
     CDS             complement(16618..17175)
                     /locus_tag="ROE18_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HDX3650382.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVP
                     AKTRDANAKAFDLGVKYATQAKPYS"
     gene            complement(17172..18017)
                     /locus_tag="ROE18_000159"
     CDS             complement(17172..18017)
                     /locus_tag="ROE18_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HDX3650383.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKSKFESMDFEERKDKFPTGVLYEDSTQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(18018..19142)
                     /locus_tag="ROE18_000160"
     CDS             complement(18018..19142)
                     /locus_tag="ROE18_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HDX3650384.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGVSVTIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASIAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIKIYNRKKFEGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGATVKKNMERLIGKIKNNQDDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAIQRLREQGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(19151..19462)
                     /locus_tag="ROE18_000161"
     CDS             complement(19151..19462)
                     /locus_tag="ROE18_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HDX3650385.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECETHCPDFAIMVAKREEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(19477..20346)
                     /gene="sucD"
                     /locus_tag="ROE18_000162"
     CDS             complement(19477..20346)
                     /gene="sucD"
                     /locus_tag="ROE18_000162"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HDX3650386.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGVTPHKG
                     GQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKAIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(20356..21519)
                     /gene="sucC"
                     /locus_tag="ROE18_000163"
     CDS             complement(20356..21519)
                     /gene="sucC"
                     /locus_tag="ROE18_000163"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HDX3650387.1"
                     /translation="MNIHEYQAKAIFVDNGIPTLKGKVAFSVDEAVANAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDEGKKLISMLAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSF
                     DDSALYRHPEIAELRDITEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASPETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKTILDNSNLKNIKASTNLKNGAELVKSLVG"
     gene            complement(21520..22422)
                     /locus_tag="ROE18_000164"
     CDS             complement(21520..22422)
                     /locus_tag="ROE18_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDX3650388.1"
                     /translation="MKITVIGAGNVGSSVAYALILREIANEIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCTKDYTHTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFSSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSRVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFEDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMLESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     RMDLSLQEKDKLEKSLIKYQYKGE"
     gene            complement(22419..24623)
                     /locus_tag="ROE18_000165"
     CDS             complement(22419..24623)
                     /locus_tag="ROE18_000165"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HDX3650389.1"
                     /translation="MQITYTLTDESPALATYSFFPIVKAFLSRAHIGVKTSDISLSGR
                     ILATFSEYLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYAKEIKASKDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYNEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNVA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLNGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYVNKCGNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
BASE COUNT         8233 a         4857 c         3006 g         8675 t
ORIGIN      
        1 accatacttt taaaatttgg caattctttg ccaattaaat ttaatctaac tccacaagct
       61 tttctttctt ttaatttttt aagctcatca aatttaatat tttcatcaac cacaactata
      121 gcttttatat tttcatcttt ttctatactc tgaagcaaaa attcattatc aatacctaaa
      181 aaacttggct gaactaaaac ccctttatta aaatcataat gatctaaatt tgctttataa
      241 tctttaaaac tagcgtcata atcaggctta tatcttgcat ttgcaaccgt atttaacttt
      301 ttcaaaaata tatgtgcgtg agtatcaatc ttcattaaat tatccttata aaataaaact
      361 cattataata gtagctaaaa tcgccgctat aaatcctata ggcacagctt taataagtaa
      421 atctttaaat aatttttcct tatatttatc agggcaagat cctaaaatta gacttcctcc
      481 agaagaaaaa ggagaaatag cagaagcttg agcccctaca acaatacaag aaaaaagcaa
      541 tacctcgctt aatccactgc ttgcagcaat gcttggaact ataggaaaaa gcgctggagt
      601 aaccacaccc aaagtacttg aaaaaagcga cataagagct gcaatagcac acattattaa
      661 cggaataaaa atcacattga tctcattttc tacaagatct gaaaataatt ttatagcccc
      721 tgcttcaact gctatgctaa ttaacatccc tactccacaa atcattatca aggttcccca
      781 aggaattaaa gcaacaactt gtttctcatc ggctaatttt aaaaataaag caatggcaac
      841 aaaaatcatg gctatcatgg ctatatctat ttttttatta aaataactaa ttgtctcatt
      901 atgtggaaaa ataatattta gcacaggaaa gattaaaaca acaacaatca tcataaacat
      961 gagaattaaa gtagtttttt gtttataatc aaatggatca ggttttgaaa taacactaat
     1021 ttttatatta tttttaaaag cattaaacac aaaaaaagat aataccacaa taggcaaaat
     1081 tatagtaaaa gcaaaaataa tactagaatt tacaaaagct tcatttgctt caatgcctga
     1141 attttccatc aatcctcgaa aaataatccc actttgagaa gtcataaaat ttgctcctcc
     1201 caaagcacca tagtttatag ccatagctcc agcaattttg cttaaaccga ttttatcgca
     1261 aagtaaaaaa gtaagtggtg ccataaaagc taaaactgta taaaaacctg ctcctaaagc
     1321 agctataata gcactaacca caaaaataac aaaaggaagc aaataaggat gattagcaaa
     1381 acgatacatc aaatgtccag ctaatttttc aagagttcca tttacggttg caaaattata
     1441 aaacaatgaa acagcaaaaa taacaaaaaa tatagaaata ggccaaaaag ctatgatttt
     1501 tttaggagct aaatccataa aaaaagctcc tataatataa gcaaaaatca tagcaaaaat
     1561 tccaacatta tgtctagtaa tatagcccaa aataatagcc actataatac tagagatgat
     1621 taaaaaaacc attatcatcc tttaaaatat tatagggctt ataatatcaa aaaatatatt
     1681 tttcaaagca taaaaacaaa atctaaattt aaaaaatatc tatttagtaa caaatttact
     1741 catcttatga aattttttat aaaatatcca catccatagc aagcaaagca aagcttccta
     1801 gccaatgcga cccaagataa tcatcttcta tatgagctat ggctttatca aaatgctctg
     1861 tagcattgtt tcttaaaaga atttttaaat tttcatcgca agaatttgaa agtattttaa
     1921 aacaccaagc acgacttaaa tttaacccat ctaaatgtgc tattttacca tcgctcctat
     1981 cactcacact cacaggggta aataaagttg caggctcttt tgcttctaaa tttggcaaat
     2041 atgctttaaa aaattttaca aaatcatttt tatgtaaaac agcacttaaa agcaccgctt
     2101 ccatcaaaac aggagataaa aactcatctc cacaaggctc taaagcttgc atatttttat
     2161 catttaaaaa ccacttttta gcactttgga tgatgcaata ctccaattct tgatcttttt
     2221 taaatcttgc atattctaaa gcaaaataca aagcaaaaga gctattaaaa tgggttccaa
     2281 ctcgtatagg ataatccatc ttaggtaaaa actccttaaa ttctttaaca aagaaatcag
     2341 ctatgccttc taaattttta gcccaaattt cagctttgtc attttcttta gcaagtaaat
     2401 ttatctccaa agtcagtttt aaaaaccatc cccatccata aggtctttca aaacctttgt
     2461 gtgcagggtt ttgaagatat ttaagctctc cttctgcttt ttctttgcta aattgagaat
     2521 ctagagcttt gatgatttca tcctttggag caaaatgaga aaaatctttt aaaattttca
     2581 ccaaaagcca gtgagaatgt acgctagaat gccaatcata agaaccataa aatataggat
     2641 acataagttt tggcggttta atatcattga tatcattaaa agaatgtgta attttatttg
     2701 gcaattctct aaaaatattt tctagtgcaa taaagctaaa ttgttttata aatttttcca
     2761 ttgtttctcc ttaaaatcta aaagctaaaa aatacattaa aaagatatta gccacaagca
     2821 aaacaagtcc tgacataaac tgggctttaa ttacgccatt tttatcatcc aaatttaaaa
     2881 gtgccgcagg aactatatta aaatttgcag ccataggcgt cattaaagtt ccgcaaaatc
     2941 cactaagcat tccaatcgct cctataatag caggatttgc atgcatttgt atgattaaaa
     3001 tcggcaaagc aatagcagca gtaatcacag gaaaagctgc aaaagcattg cccattacta
     3061 tagtaaaaag cgccatagcg atacaataca cagctactgc aataaaagca ttatctaaac
     3121 taatataact agataaaagt ttagatactt gatcgcccat tcctgtagaa acaaaaacta
     3181 ccccaagtgt agccaaaatt tgcggtaaaa gcgctgccca actaatgtga tccatagtat
     3241 gtgctgcatc tttaacagct cttttaggag aagccttaaa cataaaacaa gcaactactg
     3301 aagaaataat tatacctata atcaaagcca tcaatgtagc atttttattt tcaaaaaaac
     3361 tcaaataggg aaataaaaaa gtcccaataa gtgtaatcaa aggaaccatt aaagcaggaa
     3421 taaaaagttt atttttataa atatttgcat gttttatctc atattctttt tcttctttgc
     3481 taacttcgat ctttgctggt tttaataaat taaatcctgc tataagtgct agtaaaatca
     3541 ctatacaacc catcacaaaa tgaggcaaaa ctcctgctag taaaaaagta aaactataac
     3601 ttatccaaaa taccccgccg cttattcttg attttatatc tttagcttga ttagaaaaac
     3661 ttaaaattcc aaaaactaaa aataaaattc ctacaatata ataaagtaaa tcaagactta
     3721 tcatcactca accctttata agttttttcc aatcttttat caaataaata aagtctagag
     3781 caatggataa ttaaagccaa aattccagtt ggtatagccc aaactgataa atgcaatggc
     3841 tcaacaataa taccattgct ctcataaaaa gctttaataa ataaaataga atgcacggct
     3901 ataaaaatat cctctccaaa aaatacagca acattatccg ttcccgcaga aaaagctttg
     3961 attttttgac tatctttatg tgttaagttt ttaaatttaa gcttagctgc agcttctgcc
     4021 ataggggcta ttaaaggtct tatcatctgt gcatgtccgc ctaaagataa aagccctaaa
     4081 gctgcagtaa cttgtctaaa aacaaaataa cacattaaaa ttcgtcctgt actggcaact
     4141 tttattttgg atattaaatt tttagcctgc tctcttaagc ctttgcgttc caaaacagca
     4201 agtaaaggta aaataagcca aattatagca acatagcgat tatctacaaa agattttcct
     4261 atatcactaa caaccttaac aaaatcaaaa cctgaaacaa gtccagcata aattccaact
     4321 gaagttacca ctaaaaaggg gttaatcttt aaagcaaaac ctaaaacaat caaaggtata
     4381 gaagcaagaa gtaaccattc catcaaccat ctccacaata tgaattagaa atattataga
     4441 aattttaaat tgaagaaaag tttaaaaaaa tatttttaag aatggaatga gaaattaagt
     4501 aacaaaataa attttatata aatttaaaaa agccttggaa tagtccaaaa gctttttttg
     4561 tattatttgt tcgctctttc tatatactca ccacgcacag tatcaacgcg tataacttca
     4621 ccttctaaca catgaaaagg aatttgcact actgcgcctg tttccaatgt agccggtttt
     4681 ttatttgatc cttgagtatc acccttaaaa tttggagctg tttcgatgat tttgagttca
     4741 ataacttgtg gaacttctac gccgatagct ttaccattat ggaaaagcac atctaccatc
     4801 ataccatcaa gcatccattt tttcgcctca cctacatcat catcactaat agctacttgt
     4861 tcatatgttt gcgtatccat aaattggcaa ttttcaccat catcataaag atactgcata
     4921 gttttatctt ctaaatttgg agcttcacat ttatcacctg catggaaagt tttttcaagt
     4981 actttaccat caataaaaga tttgatttta atacgcacaa aagcaggacc tttgcctggt
     5041 tttacatgct gatactcaac tattttaaaa ggaattccat cgatttctat tttaagtccc
     5101 ttttttaaat cacccattga ataagatgcc ataaatttcc tttgttaaaa aataaaaaac
     5161 aattttatca aattttgatt gatatcacaa taaaattatt ttatttgatg aaaaaataag
     5221 taaaattacg ttaaaatcca aatttaaagc atagtaaatg ctcgcttctt tttaggagag
     5281 gaaagtccga gctgctaaag acaaacattc catctaacag atggctaggg taacctaagg
     5341 gatagtgcaa cagaaagaaa actaccacgc aagtggaaaa ggtgaaacgg cggggtaaaa
     5401 gcccaccagc gattttggta acaatttcgg ctatgtaaac ccaatgtgca gcaagaaggg
     5461 atggttagcg tctttgtttt aacccttcgc ttgattttgt ttgcaaaaac aaaactagat
     5521 aaatgagcat tcaagacaga actcggctta tcgctatgct tttttaagat ttaaaatatg
     5581 tcaacgcttt ttgaaatttt tgaatttcaa cagcttttgt ttttttcttt tgttcaatca
     5641 gtataacagc ttcttgcaaa agagcttgaa cttgataaaa tacatcattt gcattttctt
     5701 ttaaaaaatc ttctgaaggc gattctttgg ctaaattttt aataaaagct ttcatatcaa
     5761 gttcatcaag taaattttca agtttattga catcttcttg gattaatgca agtttaaaat
     5821 cactgagcca ctgtttcatt gttatgcact tctctccaag cttctagcaa acctttggtt
     5881 acatttataa cttcattgat tctatcttcg ttattttcta aatttgccaa agataaaagt
     5941 tgaatttctc ttgtataaag cccgcttaaa taatgtgcca cttctccgcc tttttcatag
     6001 tttaaagtat taataagctc tataaaaata gccgtggttc tttttacaaa atacactctt
     6061 tgttctatat cttcatttct tatggctact ttagctcttg cacaaaaacg caaaattccc
     6121 tcataaagca tttcaataag tttttgcggg gactctatcc ccacttgatt ttgagaataa
     6181 gcattatagg ctaaattatt ttgcatcttt tttatcctta attattagaa ttgtttgccg
     6241 cattaatcat attagtcaca gtatttagct gttgattgag tttatttaaa atactctcat
     6301 attgcaacca ttgattcgcc attgtatcat atcttgtatc aatcatagcc tgagtcgagt
     6361 ctttagaggt atttaatgat ttaatatcat ttgtcaaact ctcatcatat tttgtaattg
     6421 aaccgtcttt tccagtcatc tcttgcaacg tggcttttaa ttttgaaaaa atacctttac
     6481 cttctatagg cttagaggtt atatttacat cagacaaacc taattcctta agaatgctac
     6541 catctccttt gattgaaaaa tccgaactac catctccact aaaattcaac ctaaaccctg
     6601 taacattgtt ttgattatag gattcaacct taacttttaa gccttcaata cctttactgt
     6661 ttatatgatt agctaaattt tgaagcaatt cttcctctgt tttccctgtt aatttaaaat
     6721 tagtaccatc agaattttta gataaatcat atgtttgatt attaaaaact atagtaaaat
     6781 ctcctggttt aaatgctaaa ccattagtat tacctccatt ggaattaaga tatttactta
     6841 aacttcctgt cttaattacc tctcctgtgt gattaatgtc ttcgtattta gtaatatttg
     6901 aaaaaaaact ttcagtagag tctggatctt ctttaacttt ttgttcaaat ttagaagaat
     6961 caaaactcaa agtgcctgca tcatttaaac ttaagccaaa atcctgcata gaaagcataa
     7021 ccttagtgtt tactttatta ccatttgcat cttcagtagt tccatcaaca acttgagaat
     7081 caaacaaatc agcaagaatg cttgagcgta ttgaatttac ttcactgatg ccttgtaaag
     7141 ttccttttgt tccagtttca ctattatagt cagttgcagc attaagattg gttactaaat
     7201 cattataagc atccaccaaa tcttgcatgg cttttgtcac accttcaaaa tcttgctgta
     7261 catcaaaatt aatttcacct gttttattta aagttaaagt cattcctaca ccaagatcgg
     7321 taacagtatt acttgatcta aacatcttaa taccatcaag tgtgaattct gcattttgcg
     7381 cagtttggat atgcaaagaa gcatccttaa taccataacc ttttttatcc ttagctggat
     7441 caatagtctg agtcgtttta tctaattccc atccaagatt tgaaaatatt ttttctgcct
     7501 ctggatcact ttgatactga ccctgcgcat ctttttttcc agcatagaaa cttatcgcac
     7561 tgtcttcgcc tgtttcttta ctggttaaag ttaagcggta aggagtgcct ttctctcctg
     7621 tgtttacaat cttagcgaca atctctcctc cactagcttc attaatttta tcagctaaat
     7681 ctctataggt tgtgttttta tctaccgtaa cagtatattc tttgccattt gaaaaaaaag
     7741 taagatcggt ggttccagct aaatttgcat taataaaacc actgtcattt gccaatcctt
     7801 gactttgata tacatctttt tgtgcaagtt gagtaacatt gatattcatg ctttgtaaag
     7861 caacacccga attaactgta agacttgctg gaggattatc gctaatactt cctacaactt
     7921 ttcttttcgc aaaaaccgta gcatcagcta atgatgaaac agccgtctga aaacttagta
     7981 atttagtttt gatttctgtt aaatcttttt gtttggttgt attttcttca atttttttag
     8041 tataaggatc aatacgagct ttttgctctg cttcttttaa tttatctata gtatcttgag
     8101 ttaaaacccc agaaccaaat cctaaactag atagactacc aaatgccatt tttaactctc
     8161 cttatcaaat atcattccta tcacatccct aaaatactca gctaatctca tagcttcttc
     8221 gctaggaatt tgacggattt cccttccagt acttttttca gtcacgctaa tatacataga
     8281 accgatttta tcactataac caaaacgaac attggtatct agagaatcca tttgctcatt
     8341 taactttttt gtaatatcag ctaacttttc actcacacct cgttgctgtc catcatcgcc
     8401 tccttggctt tgacttctat cggtttgaat gtttaaacta gcctgtgtct cacttgttct
     8461 ttggctaatg tttgccaaag ctgtatccat ttgcccattt gccttcgata tttccatttt
     8521 aaaatccttt ttaaaatttc ctattgctag ttaaaagctt atatcgacaa atttataaat
     8581 ttatgaacac ctataaagaa aattttattt ttcaataata aaaaaataat aagcaaaaac
     8641 tgtgccaaaa ttttaaaata aatctcaatt atcttaaaaa atttcaaatt tattaaaaag
     8701 atctggatta ttttctaaaa tattacgcaa gatcaaatct tctatcacgc ttttagtgca
     8761 atctgtttgc ttaggccaag ctcttaaata accctcagct tcacctttag cacttgcatc
     8821 tactccaagt ctttcttctt tgataaaaat atctctttta gcatctatat tatttaccac
     8881 acgccaaaca agcatataag aattttcaag cttattttca gcatctaaaa atactaaaat
     8941 cctaaaatgt tttttaaatt ctaaaagttt gtcaaaactt tgttcgattt tttctttttt
     9001 atcaagcaaa atacaaacta taggactttt actttcttta taaaattgct ttaaatttaa
     9061 aagttctacc ttagttttaa aaagttctag taatttttca tcttctaaaa tttcaagctc
     9121 ttcaacttgt atttcttcgc aagcatcaag tcctgcttta cccccaaaac aagaattagg
     9181 tgaagcatga tctaattgat cacaaattcc ttctgaaatt aaaattttct ttgtattaaa
     9241 acgatctaac atataaggaa ttaaagcatc ataatctttc aaagaaggtg catttttatc
     9301 cacaaaaatt gcatgcttaa caaaactcat ttgccctact ccccaaaatg catgcataat
     9361 ttgttgcgca tgagcgggat attttgcatc gatttttgct aagataagat tatgaaagac
     9421 cccattttca ggcatattat aatcaattaa atcaggtact gaagtttgaa gcaagggtaa
     9481 aaaaattctt tcggtaccaa gccccatgat cttatcttct aaaggaggct ttcctacaac
     9541 cgttgcttga tagatcgcat cttttttagc ataaattttt tctactttca tcacaggaaa
     9601 aagttcagca ggagtataaa aacccgtatg atctccaaaa ggaccttcga ttttaaactc
     9661 ttctaaatcc acataacctt caataaccac atcactatca taaggtataa aaataccatt
     9721 ttcacaagga gtaatttttg caggagtttt tttaataaaa ccataaagta aaagttcaaa
     9781 aattccctta ggtaaaggtg cttgagaaca ccaaatataa agcggatctc cacctatggc
     9841 tatacttaca ggcatttttt taaaaccagc atttttgtat tcgtgataaa aatttgcccc
     9901 atctttatga atttgccaat gcattaaaag ttcattttta tcactcattt gcaaacgata
     9961 cattccaaga ttattttgag ttttatctaa attttgtgta taaacttgcc ccatggtaat
    10021 aaatttaccc gcatcatctt cccaagtttt tagtatggga agttcttcaa gtgagtttaa
    10081 aatttcataa tcatacaagg ctttattttt tttcagtctt ttaggaggaa tatttttaaa
    10141 acttaacaaa ttcataaaaa aatccatttt tgctttaaaa ctcgtaggaa tatgaagctt
    10201 ggtgagtttt gaaatttctt cagccacctc ttcataatca cgtccaaaag ctaaatttaa
    10261 agccttttca ttgcaaaaag tattcatcaa aacaggaaat ttatattgtt tatttaattt
    10321 tttatctata ggatttttaa ataataaagc cttccctttt tctccttttt tagcttctat
    10381 ataggctaaa tgagcgattt caagatctac atctacaggt tcttcaatta cccttaaaag
    10441 atcattttct tttaaaattt gaataaattc tttcatatca tactctcagc tttttttaaa
    10501 agttctttag cacctttagc aataaactcc ttagccaaac tctctccaaa acctttaaaa
    10561 tcattctttt taatcattct cttatctttt aaaatttcac ttccatcggg tagtccaagt
    10621 accgcacgca cacaaatttc atctcccaag agctctgcgt taatacctat aggaacttga
    10681 caacctcctt ctaaagtagc aataaattct ctttcaatgc ttgtttcaat caaagcattt
    10741 tcatcattta aacattttaa aagttctaaa attttttcat catttatgct ttcaatacct
    10801 aaagctcctt gagaagccgc aggaataagc tcatctttgc taaattcata aacaaaattc
    10861 acttgcttat ctaagtttaa gcgtttaatt cccgccattg ccaaaataat cgcatcaaaa
    10921 tcattatttt ttaatttctc tatacgagaa ttgacattac cacgcaaaga aataatatct
    10981 aaatcaggtc ttaataataa aagctgcatc ttgcgtctaa gactagtagt gcctattttt
    11041 gcaccttttg gtaaagaaag aaaatcttta taattttgac ttagcatagc atcattgctt
    11101 tgctctcttt tgcttaccgc tgccaaaact aaaccttgag gaaaaaaact aggcacatct
    11161 tttaaactat gcactgctaa atgtgcttct tttcttaaca tactttcttc aagttctttt
    11221 gtaaaaagtc ctttaccacc aatttttgcc aaaggagaat caagcaaaac atcgcctttt
    11281 gttttaaaac cttctaaaag cacttcaatt tgatgtgtat tttttaaaat ttgggctaca
    11341 tgttcacttt gccaaagagc taattgactt tttcttgttg caataataag cttcattttc
    11401 tatcctctat aatttcaaca tcaataattt cttcattaga attttgatac tcttgcttgg
    11461 tgtattgata ttttgattta gttattaatt tcaaagcaat accaaagaaa aatacaaaaa
    11521 ttccaaaaac acttgtaata atccctggaa aaacaagtaa aaaccctgcg ataacaaaag
    11581 aaaattgtgt taacatatcc tttaagccac ccatttgaaa ttcaagcata tttttccaaa
    11641 aaattcccaa taaaaccgca ccaaaaatca tactcaaaag tatgaaaaat aaaaaattac
    11701 caaaaccaaa aaacactata aaaagtatac ttgcaataat ttcaagtaca aataaaggac
    11761 ttaaacttaa tttataattc ataacacttt ctttttaaga atttccataa gttcatcagt
    11821 ttttataagt tcttttacca aatcttctct ttggataagc tctatttcat tattttctaa
    11881 tcccttgcca ataactaacg cataaggaaa acccataagt tcaaaatcat tcattttaac
    11941 cccaaaacgc tcatttctat catcaagcaa gacttctaat ccaagattag ttaaatcctc
    12001 ataaagctta ttggcaaatt ctaaagcctt ttcatctttg agatttgaaa caataatttc
    12061 aagcacaaaa ggagctaaag ttttattcca aatacatcct ttttcatcat gacttgcttc
    12121 aatagctaca gccaacaagc gtgaaacacc tatgccgtaa catcccatat aaaaaggctg
    12181 acttttgcca ttttcatcta agaaatttgc attcatcgct ttggaatatt tttgtcctag
    12241 cttaaaaata tggcctactt ctataccttt actttgtttt aattttgctc cacatttaac
    12301 acagcaatcc ccttctttaa cttcaatcaa atctttaaaa cgatctttat ttaaatttac
    12361 aacatcaata ccgattaaat gataatcttt ttcattcgca cccataatca tttgcttttc
    12421 gttttcaagc tcaaaatcta tataaaaatc tatatctttt aatcccacaa aacctataaa
    12481 accagctact aagccagctt tttccaattc ttcttcgctc gcatcgacta gttcaagggc
    12541 actgcaagca ttttgagcct taacctcttg caaatcatca cttcctctta taaaaaacac
    12601 aactaattta ctttcatttt cataaatagc tttttttacc actgctttaa tcgtataaaa
    12661 agcattaatt ttaaaaaatt gtgctaaaga atctatagtt ttaatatttg gagtgtgaaa
    12721 tttacttgca taatttgctt caggacgctc atcttgacaa gtttttttag ctctttttgc
    12781 agcttcaaca ttagccgcat aatcacaatt ttcacaaatt aaaatatcat cttccccatt
    12841 ttttgctaaa accataaatt ccttagagcc acttccacca atagccccac tatcagcttc
    12901 aactgctcta aaatcaagcc ccattctttg taaaatttga gaataagttt tatacataag
    12961 ctcaaactca cgccctaaat cttcttcatt agcatgaaaa ctatatccat ctttcattag
    13021 aaattcacga catcttaaaa gcccaaatct aggccttgct tcatcacgaa atttaagtcc
    13081 aatttgatat aaatgcaaag gaagttgttt atagcttgtg attttgtttt ttaccaaaga
    13141 aagcatagct tcttcatgtg ttggacctaa aacaaattca ttttcttttc tgtctttaaa
    13201 acgcaaaagt tcttttccaa aaacattata acgcccactt tcttgccaca aacttgcagg
    13261 agtgataaaa ctaagattta cttcttgtgc tccagcctta tccatttctt ctttaactat
    13321 atttttaatc ttatctaaaa ctctttttcc caaaggcaag aaattataaa gtccgctacc
    13381 aatttgttct acaaaacctg cacgcgttaa aaaaatatga ctaggtaaac tcgcatcttt
    13441 tggcgcttct tttaaacttg gtgcataaaa tttagtaaat ctcatcatta ttctccatat
    13501 caaattcaca tttatattga tttaaacctt caagattatt ttgcaaatca aaaacataac
    13561 gcatagcatt aatcactgta tcgctttgca ttttaccttg taaatgtttc aaattcatag
    13621 taggcgtgtg taaaaaagcc ttaaaaactt gatgaatcaa ctttctagcc tcttctttat
    13681 cagatttttt caaatatcct ttttttaacg caatttcaag ttgtttatct gcatattctt
    13741 tagcttgcaa gcgtatagct ttgataatag gcatcaaagc caaatcgttt aaatacctaa
    13801 aaaattcact tgtttcacga cctattatcc cataagccat acgagcttct tgttctctta
    13861 gtgctaaatt tttttgaacc acaatttcaa gatcatctac agcaaaaaca gatatatttt
    13921 cattttcatt gatatcaata tcccttggaa ctgcaatatc aaaaaaatac cttttataag
    13981 aaagttcttc tattaaagaa tttgtaataa tagcatttgg tgcattggta gctgagaaaa
    14041 aaaactcgta ttgatttaaa tattttttta aattttctaa actatcatat tcgcttaaaa
    14101 caccaagtct ctcacacaaa tctttagctt tttgtaaatc acgatttaaa ataatcacct
    14161 tagcacccgc agcaattaaa tgttttgccg cgagttctcc catctctcca gctccaataa
    14221 caacagcttt tttttgcgtt aaatctgcaa gttcttttgc ttttgccacg gcaacgctag
    14281 ctacagaaat agaattttta gaaatttgag tttcattgcg taccttagca gcacatttaa
    14341 aagcactatg tactgctctt gaaaggtgta ctccacaaaa attatttttt acagcaaaag
    14401 caaaggcatc ttttaattgt cctgctatct gagtttctcc aaccaccaaa ctatccaaag
    14461 aacttgctac agaaaaaaga tggtggattg ctccactatc ttcaaaaata tcagcttttt
    14521 caagtaaaat atctttatca acatcacaaa gtaaagccaa agatttaaca ataaactccg
    14581 cacaggccat ttttacaaaa gcaacaattt caacacgatt gcaagtactt ataaccaaac
    14641 attcttcaat attttcatga gtgctaatga tttttaaaaa ctcacttttt ttagcttcat
    14701 tggaaaagct taacttttcc cttaaggcaa tatctgtatt tttatgagta aaagatatac
    14761 aataatacat taaaattccc tatctatcat agctttaata atatcattaa gcttgttatt
    14821 atcatatttt tcaatcgctt tactagcctt ttttgcataa gttttagctt ctaaaatagc
    14881 tttttctaaa gctttttgtt cttcaaattt agtttttagc cactcttttt cattttcatt
    14941 taaatctttt ttaaataaag tctgcaaata tatcctatct tgttcttgta aattttcata
    15001 aagataaata taaggtaagg tagtcttacc ctctttaaaa tcattcatag caggttttcc
    15061 aagaattttt tcatcactct taatatctaa aatatcatca atcatctgaa aagcgagtcc
    15121 taaatttttt ccatattctg caaaatcttt ttcatataat ccagccaaaa tagctccgca
    15181 tctcgcactt gcttcgatca aaacagctgt tttattatag atcattttca aataagcttc
    15241 tttattgata ttaaatttct ctcccaaatc aacatccata agttcgccta tagcaagctt
    15301 tacaacagcg tctgaaataa tacttgcaaa tctagcatcc attttactta attcataaaa
    15361 ggcttttgaa tacaaaatat cgcccaacat aagagcattt tttgtaccaa attcagcatt
    15421 aacagatctt gccccacgcc ttaattcact ctcatcgata atatcatcat gtaataaact
    15481 agcaagatgt atcaattcta tagctgcaca aattttaaaa gcaatctcac tctcatctgc
    15541 gatagctaat aataatttag agcgtaattt ctttcctgat tttacatttg aaagcatatt
    15601 taaaataggt tcatagccaa gttcttctaa aaactgtttt attaattcat ctattttttg
    15661 cactatcttt tccttgttaa ttgctattat tattttcttt gcttgttaat ggttttacct
    15721 gaggttcgtt aaaattaatc ataggaacaa cctgattatt ttgcggtgga ttttgtaaag
    15781 ctttttttct cggatctaaa aattctacca ttaagcgaga ttccttatct tctatataaa
    15841 ccgtaaaagt tgccaaacct ttattataac cactaaattc taaaataagt cttgctctat
    15901 caatgtgtgg attggtataa tcaggtatta aagtttgagt tacccaatct aaatttcttc
    15961 ttaaactcat cacaaattga cgcggatatt tgcgaaattt cgaatgtacg atgatattag
    16021 tattatcaaa caaagtccaa taaaaatcaa aattttgcac cttatcttca tagcctattt
    16081 ctttaatctg cacactagct ctctcatctt ttttaagtat aaatttataa gtataatcaa
    16141 aagttggttc agatgctaaa acattactaa aaataaaaaa aatacaaatt aaataggggc
    16201 ttattttaaa caattttagc cttcgtgtcc taaaattttt gcgcccaatt ctatataaat
    16261 atcattttgc ctttcttcta tgaaatcacc attttctaat atgaaatttt ttacatccat
    16321 ttctgttaga ccttgttttt ccaaaagttc caccatagca atatgatcag caaaaaattc
    16381 ctcaaaaact ttttctaagg ctcctaaatt tccattttgt ataatttcta taaatttttc
    16441 ttttggagtt ttattaaaca tttcatcaaa aaaatccatt aattttcctt gaaaatataa
    16501 gtttttgatt ataaaatttt aatcgttaaa agtagctaaa ttaaaataat taaaatttaa
    16561 attttatttg caatgtgtaa aattttagaa gttaaattcc gcatgatgcg gaatttatta
    16621 tgaatatggt tttgcttgag tggcgtattt tacacccaga tcaaaagctt tagcatttgc
    16681 atcacgagtt tttgcaggaa ccatatgaag catagtttct tttaaaacat ctaaatctat
    16741 acatttgctc atataagcag caattgcaag tgcaacaact gattgagtag ccacatttcc
    16801 tacctcatct ttagctatgg taataatagg gatttcaaaa atttgccatt ttttataatc
    16861 ttcactttca ggatgtacta aatttggctc tacaactata atacctcctt cttttacacc
    16921 cccacgaaaa cctttataac ccttatctgc agtcgaaagc ataaaatcta cttccccttc
    16981 tacagcataa ggaaataaaa tttctttatc atcaatgata atatccacct tagtaggacc
    17041 gccacgcact tgtgaagtat aagtagaagc cttaaaagct tgacgacctt ctttaatggc
    17101 tgcttctgct aaaatttctc ctgcggtgat aacaccttga ccaccctcac caccaaatct
    17161 taattgatat ttcattttaa ggctcctaaa tcaaccattc ttttttcttt ggctgcacga
    17221 cgcacttctt cataagcatg acaatattct ggctgcgtgc tatcttcata taaaacacct
    17281 gttgggaatt tatcttttct ttcttcaaaa tccatacttt caaatttaga cttatccaca
    17341 acacgatttt taatccaatc aagcatagcc actgcttcac ccattttatt ttttctacct
    17401 aggttaatat gacaatttga gaaaacatca acaaagctat aacctttgtg tgctaaagct
    17461 ttataaatta aattttctaa tttatttgcc tcaataacat ttcctcttgc cacgaaagaa
    17521 gctccagcgg ctttagttaa ttcgcaagca tcaaaatttg gatcgatatt tccaaattga
    17581 gctgttactg tataaaaacc ttttggagta gttggacttg tttgagaatt tgtaagtcca
    17641 tagatgaaat tattgattac aatatgtgtt aaatcaatat ttctgcgaca accatgtatg
    17701 gtatgatttc caccaattgc caaagtatca ccatcgccac ttactacaat aacatgtttg
    17761 ctaggattgg ctagttttat gcctgttgca taagcaatag ctctaccatg agtagtatga
    17821 actgtattgc aatttacata agaactcatt ctgccactac aacctatacc cgaaacaaga
    17881 caaacatcat ccatattcca accaagtttt tctatcgcgc ggataataca ttttaaaaca
    17941 acaccatcgc cacatcccca acaccattga gtaggcattt tatctactct tagatattca
    18001 tcataattaa aagccattta tatattctcc tttaccttag caataatttc acttggagtg
    18061 ataggacgac catttgcacg gtgcaaacta ataaaatcgc gacgcgaagt tactctttca
    18121 atctcttcaa gatactgtcc catattaagc tcgcttacca ttaccttttt aaatttgctt
    18181 acaacctcag caattttttt ctcagccact ggataaagag taattggacg gaaaagtccc
    18241 actttaatcc cttgctctct taatctttgt atagcttctt ttgctgaacg acttacactt
    18301 ccataagcaa tgattaaaaa ttcagcatca tcaagcatat attcttcata agtacaaata
    18361 tcatcttggt tgtttttaat tttacctata agtctttcca tatttttttt cactgtggct
    18421 ccatcttctg ttggaaaacc tatatctcca tgatgaagtc cggttacatg atagcgataa
    18481 cctgtaaaga aaggatttaa agttgcaggc tcattttctc ctgctgcata aggtttataa
    18541 tcctttttgt ctccttcaaa ttttttgcgg ttataaattt taatatcttt taaatcaggt
    18601 aaaaccgctt taccattcat gtgccctaca gtttcatcca taagtaaaaa tactggagtc
    18661 atatattttt cagctaaatt aaacgctcta atggtttctg tataagcttc ttcaagactt
    18721 gcaggagcaa tagcaatact tgcaaaatcc ccatgagttg gtgcttttgc ttgaaataaa
    18781 tccccttgag ccacccttgt tggaagacct gttgaaggac caccacgcat aacatttaca
    18841 ataacaagtg gaatttcagc aataaatgca agtcctattt gctctgcttt taaagaaatt
    18901 ccaggaccac tacttgcggt cattgatttt acgccactca tagcagcacc aatagtcaca
    18961 cttacacccg aaatttcatc ttccatttgt ataaaagttc catcatttgc aggaagcata
    19021 tggcttaatt catgtgcaat ttcagaactt ggtgtaatag gataacctcc aaaaaattta
    19081 catccacaat caatcgcagc tttggcgatt aaaacattac ctgttgctat aacttctctc
    19141 attatttttc ctatgctaat tttttgtatt tgttattttt tacggctaca gctctatctt
    19201 tagcctcagc agtaagtttg gcaaatttaa attcctctct ttttgccacc ataatagcaa
    19261 aatcagggca atgtgtctca cactcggtac agcctataca ggattcaggg tgtaccacct
    19321 ctatcatttg tcctaaaacc gcatgcacat catcgcgcat agctaaaacc ccagcggggc
    19381 aatagctaac acaaatatta catgctttac atctatgctc atctacccaa acaggggtat
    19441 cttttggagc tgtcatactc atgttttttt cctttattaa cctaatattt tttgaatttc
    19501 ttcaccaatc aaagccggag aatccaccac atgaattcca tagcttttta aagcttcttt
    19561 tttagctgca gcactttcat cagcacttcc tactatggca cctgcatgcc ccattctttt
    19621 gcctttagga gcagttgcac ctgcaatgaa tgctaccaca ggtttgctaa tattttcttt
    19681 aataaattta gccgcttcca cttccaaact accaccaatt tcacctatca ttacaatagc
    19741 tttagtttca tcatcttttt ggaattcact taaaagttct ttataagcaa gacctatgat
    19801 aggatcacca ccaattccta ctgcagtaga aattccataa ccaccttgaa ctacctgatt
    19861 agcagcttca taagttaaag ttccactttt tgaaataagc cccacgcaac cttttttaaa
    19921 aataaaacct ggcataatac ctaacttaca ttcttcagaa gtgataatac ctggacaatt
    19981 tggtccaatg attttcatac cctttttatt ggcatattgc ttagcaaaca tcatatcctt
    20041 tacaggcgta tgctcggtga ttacaactgc aagcttaata cccgcatcag ctgcttcaat
    20101 cacgctatca cccacagcaa aagcagggac aaagatcaag ctcacatcag cctttgttgc
    20161 tttaaccgca tctgcaacgg tatcaaaaac tggtttacct aaatgagttt gtccgccttt
    20221 atgaggggtg acacctccaa ctatatttgt accataagcc atgcattgct cagcgtgaaa
    20281 agttgcttct ttacctgtaa aaccttgaac tattactttt gtatttttat taaccaatat
    20341 actcattttc catccttatc ctactaaact ttttacaagc tctgcaccgt ttttaagatt
    20401 ggttgatgct ttgatatttt taagatttga attatctaaa attgtctttg cttctgctgc
    20461 gttagtgcca tcaagacgca ctacaattgg aatatttacc tcaacattct tagtagcttc
    20521 taaaattcca tttgctatcc tatcacaacg aacaatacca ccaaagatat tgataaatat
    20581 aacttttaca tttttatctc ttaaaataat ttcaaaagcc tttgcaacag tttctggaga
    20641 agctccccca cctacatcta agaaatttgc aggttttgca ccactataat taataatatc
    20701 catagttgcc attgctagac ccgcaccatt taccatacaa gctacatctc catctaattt
    20761 cacatagctt aagccaaatt cagccgcttc tctttcagca ggattttctt cagtaatatc
    20821 tctaagttca gcaatttcag gatgacgata aagcgcacta tcatcaaaac tgcattttgc
    20881 atcaagggca taaaaatccc cttctgcagt tttaattaaa ggattgattt caagcatatt
    20941 catatcttta tccatgtaaa gcttataaag tttagctaac atagaaatga gttttttgcc
    21001 ttcatcttta tcaagtccta aaactctcgc tacttcaagt ccatgaaaca ttttaaatcc
    21061 aatttgtgga tcaataccta cttttgcaat tttttcagga ctttctttgg ctactttttc
    21121 tatatccatc cctccttcac ttgaagcgat aatggtaatt tgctctgcca ttctattaaa
    21181 caaaatagcc aaataatact cttttactat attagcacca ctttctatat aaagtttttg
    21241 cacaagtttg ccttcaggtc ctgtttgatg agttactaaa ttcattccta aaattttact
    21301 tgcataatct tttacctcat ctaaattctt agcgatttta acaccaccac caagaccacg
    21361 gcctcctgca tgaatttgag ctttaactgc ccaaacacta ccgcctaatt ctttagcatt
    21421 agccacagct tcatctacgc taaatgcaac ttttcccttt aaggtaggga tgccattgtc
    21481 tacaaaaatt gcttttgctt gatactcatg tatgttcatt tattctcctt tatattgata
    21541 tttgattaaa gatttttcta atttgtcttt ttcttgcaaa ctaagatcca ttctcatgat
    21601 ttcaatcaca ccttcaagtc ctaatcttgc cataactccc aaggctttgt tttgcactcc
    21661 aaattctcca tgtaaaatca cactcatagg taaaaactcg ccacttctta tagactcaag
    21721 cattcttata caagcactag caggggccaa ataagctgaa gttttaagat gtttgattac
    21781 tttagctcca cctgttttaa cttcattttc taaatcctca aattcttctt catttaaaaa
    21841 ttcgcttata tttttatttt taacacttgc gtaagatttt accaaaacca tatcatcatt
    21901 atgaaaacca ataagtcttg tatccactct tgacattttg acattaagtt ttttggcaag
    21961 ttcatactta aatcttgcat tgtctaaaac acccgccatg gctataattt tctttgatga
    22021 aaaaatcccg ctttcataaa gagtattaag tagaaaatcc acaggattag ttaaaataat
    22081 aaaaagcgga tcttctgtaa aatctttaat ttttttagca caatcaagca taatgcttgt
    22141 atttaactga agcaattctt ctctactttg cccatctttt ctagcaaaac ctgcactaaa
    22201 aagcactata tctgaatttt tggtatgagt ataatcttta gtgcaaagta aatctatatt
    22261 taaatttaaa gcagctatgc tttgagtaag ctctagttct tttgcgtaaa gcaaatcctc
    22321 gttaatatct actaaaacaa tttcatttgc tatttctctt aaaatcaaag cataagctac
    22381 gcttgaacct acattgccag cccctataac agtgattttc atctttgtcc tattttttct
    22441 aaaatagcgt taaaagttgc acttggacgc atgattttat ttgctttttc atcatcaaat
    22501 ttataatacc cacccaaatc cactttcaca ccttgtgcat cgttaaattc ggctctgatt
    22561 ttttcttcat tagaagaaag ctctagggcg atatctttaa aaaagctttg aagctccata
    22621 tcacttgcct gtcttgctaa atgatttgca aaatacattg ctaaataaaa atgacttgtt
    22681 ctattatcat cttctttgac ttttcttgat ggagctttat tattttcaag ccattcgcct
    22741 atagcttcat caagacattc tgctaaaacc ttagctttat gattgccaca cttatttaca
    22801 taaaattcca aacttgcttg caaagccaaa aattcaccca aactatccca acgcagatga
    22861 ttttcttcga ctaattgttc tacttgttta ggtgctgaac cccctgctcc tgtttcaaac
    22921 atagctccac catttaacat aggcacaaca gaaagcattt ttgcacttgt tccaagctct
    22981 aaaataggaa aaagatcggt taaataatcc cttaaaacat tacccgtgat agaaataaca
    23041 tctttacctt ctcggattaa ctctaaactt cttaaacaag cttcttttgg agttaaaatg
    23101 gctacatttt tacccttttc ttttaaacga ttttgtacca aagttatcat gattttatta
    23161 ctagctcttt tgctatctaa ccaaaaaata gcttcggctc cactaagttc tgatctttct
    23221 atacctaaat caatccaatt taacactgca tcaaatttag cctgattagc tctataaata
    23281 tcaccttttc taaccttatg ttctaataaa actttaccgt tagaaactat tttaaaagtt
    23341 ccttcttctt tagccacaaa ggttttatcg tgcgatccat attcttgagc ttttttagcc
    23401 attaaaccta cattagatac actgccaagt tttgaaggat ttaaagtacc atttttatgc
    23461 aaatcttcaa taaccgcctc ataaatagtt gcgtaagttt gatcaggaat tacggcattt
    23521 gtgtcctttt ccttaccttc cttatcccac aatcttgcgc catttttaag cattgcaggc
    23581 atagaagcat caacgataac atcgcttgga acatgaagat ttgtaatgcc tttatctgaa
    23641 tttaccatag aaatatctgc agatttagct aaaatttcat tgtatttttt taaaatttca
    23701 tcttttttgc ttgaattttc gatcttactt aaaagctcac ttaaaccatt atttggatta
    23761 atgcctaatt tttcaaattc atcttgaaat tcgataaata attctttaaa aaatactttt
    23821 accgcataac caaaaagtat aggatcactt actttcatca ttgtagcttt taaatgcaaa
    23881 gaaaaaagca catcatcatc tttgcttgct ttaatttctt ttgcataaaa ttcctgaagt
    23941 ttttgcacat ccataaaagt agcgtctaaa atttcatttt tttcaagttt taagccctct
    24001 tttaaaattt cttttttacc atcaacgctt gtaaattcta tattagccac acaatcttga
    24061 tcgattaaaa ccgctttttc attagagaaa aaatcccctt ctttcatgta agaaacacga
    24121 gtttttgagt ttggattaaa ctcaaccaca cgataaggat tgttttttgc ataatctttt
    24181 accgcttttg ttgaacgacg atctgaattt ccttgtctta atacaggatt aaccgctgaa
    24241 cctaaaactt tttgatattt tgttttaatt tgcaattctt catcattttt tggctcatct
    24301 gggtaatttg gtaacatgta acccttatct tgcaattctt taatcgccgc cttaagctga
    24361 ggaatagaag ctgaaatatt tggggtttta ataagatttg catccgatct tttgacaagc
    24421 tcacctaaaa gttctaaagc atcttcacat ctttgttcct cttttaaata ctcactaaaa
    24481 gtagctaaaa tccttccaga caaagaaata tccgaggttt ttactcctat atgtgcccta
    24541 cttaaaaaag ctttcactat agggaaaaac gaataagtcg caagagctgg agactcatct
    24601 gttaaggtat aagtaatttg catttttagt cctttaaaat acttattttt attttcattt
    24661 ttaagtatat tacaaataaa aaaaaatgca agagtaagtt taaagtttgt tttagttttc
    24721 aaacaaactt taaatatttt taattaagta aattagcagg aagttgtatg a
//
LOCUS       DAPOLW010000006        24193 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.006, whole genome shotgun sequence.
ACCESSION   DAPOLW010000006 DAPOLW010000000
VERSION     DAPOLW010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24193)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24193)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24193
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.006"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            63..1271
                     /gene="tolB"
                     /locus_tag="ROE18_000166"
     CDS             63..1271
                     /gene="tolB"
                     /locus_tag="ROE18_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HDX3650390.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANATETSNYIFEYTLNKNGNTLSLNVKIKAGGSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVNVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQAGVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
     gene            1348..1845
                     /gene="pal"
                     /locus_tag="ROE18_000167"
     CDS             1348..1845
                     /gene="pal"
                     /locus_tag="ROE18_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HDX3650391.1"
                     /translation="MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            1849..2796
                     /locus_tag="ROE18_000168"
     CDS             1849..2796
                     /locus_tag="ROE18_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDX3650392.1"
                     /translation="MKKIFTVALLGATLLYAESSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSSLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            2811..3380
                     /locus_tag="ROE18_000169"
     CDS             2811..3380
                     /locus_tag="ROE18_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDX3650393.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIVDARAASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGHGGGGCCGGGGCGCH"
     gene            3380..4300
                     /gene="fabD"
                     /locus_tag="ROE18_000170"
     CDS             3380..4300
                     /gene="fabD"
                     /locus_tag="ROE18_000170"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HDX3650394.1"
                     /translation="MNAAFIFPGQGSQSLGMGKDFYENSIKAKELLQNASDFCKIDFK
                     HLLFEENEKLNQSEFTQPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSALAVNG
                     AFDFLEALSLVNKRGLFMQEDCAKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAAN
                     YNCDGQIVVAGLKPDLASYESVFKEAGAKRAMLLNMSVASHCPLLENASAKLCVELEK
                     VLKPNFKAVISNANAKIYTSKEEALELLKVQLISPVLYKQSIKACENEVDYFIEFGAS
                     VLKGLNKKITSKETYALTNMNDIDEFLKVV"
     gene            4297..4986
                     /gene="pfs"
                     /locus_tag="ROE18_000171"
     CDS             4297..4986
                     /gene="pfs"
                     /locus_tag="ROE18_000171"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HDX3650395.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKIEHANNTYYFAKYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQALLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KIREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            4983..5738
                     /locus_tag="ROE18_000172"
     CDS             4983..5738
                     /locus_tag="ROE18_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine biosynthesis protein TtcA"
                     /protein_id="HDX3650396.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHL
                     LNRMQAHAPFKFELEAVTLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYEVSSDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALRTLAPIY
                     QSKRGITVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKDHPKLFTSLKTAFTNLHTESFWLQKA"
     gene            5743..6264
                     /locus_tag="ROE18_000173"
     CDS             5743..6264
                     /locus_tag="ROE18_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HDX3650397.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDENLEKS
                     AFDILRAYGIEIV"
     gene            6264..6878
                     /gene="recO"
                     /locus_tag="ROE18_000174"
     CDS             6264..6878
                     /gene="recO"
                     /locus_tag="ROE18_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HDX3650398.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKMLIKAYRFYGLRHSSILSGY
                     KIDFALEENPSFLPRLKDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYF
                     DLLDECVKRFEKQNPKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNSITLLRAFLP
                     SHSQCALGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            6875..7282
                     /gene="ybeY"
                     /locus_tag="ROE18_000175"
     CDS             6875..7282
                     /gene="ybeY"
                     /locus_tag="ROE18_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HDX3650399.1"
                     /translation="MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGF
                     DHENDNGEMREKEKELIEHFNLPKSLIVRTLED"
     gene            7405..8094
                     /locus_tag="ROE18_000176"
     CDS             7405..8094
                     /locus_tag="ROE18_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650400.1"
                     /translation="MIVFPLSSFNRYFGNNPLQTLTKIRDESIENGNPELTKKQREEL
                     GNDLIDLYKISKKFSDKIELVEGSIEDKLRNNELPESEVKNLFQWMDENAKHPRWMHI
                     DGVSYDEAYVKIFHTSKSIDEFKEKYLELQKKYFVDFNNIDSSQKKLQETSEEDKKAF
                     KPIQVESKSETYKDDNKMNELLRKLLETKFGTSDELEILFGMNFSNDNAGEFNKILSQ
                     NTSAKIIDIKA"
     gene            complement(8119..9045)
                     /locus_tag="ROE18_000177"
     CDS             complement(8119..9045)
                     /locus_tag="ROE18_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HDX3650401.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFVSIHGRTRKQLYSGKADYESIASAKASVKIPVIANGDINAQNAKEVYKITKCDGLM
                     IGRASVGNPWIFYEIKSGKSVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GHKDASAFRDTVNRIDNVEEMRKKIEEFFSLT"
     gene            complement(9042..10028)
                     /locus_tag="ROE18_000178"
     CDS             complement(9042..10028)
                     /locus_tag="ROE18_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650402.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFIYMILAVLHIAFYGFLRYLKFKHFFKDAAKFEAYTQDLLLEKDLKTTFQTK
                     EFRSVAQLFKTIKTHEKIPHSNKINEILDLIDGLNKNEFFNLSKFKLENNNVLYLQNE
                     KNHLKNDANYAYNKLKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEVLTLI
                     KRFKEGNLELSVAEYEVLLSHNILSEKDYLNAAKLSTKLLNPDAILGIFNKIKNEKSE
                     ALRAYLYLLAEFGLLDELREQIHNDDKKFNDFKAFLALREKNIKIDLNQLIQ"
     gene            complement(10018..10380)
                     /gene="dksA"
                     /locus_tag="ROE18_000179"
     CDS             complement(10018..10380)
                     /gene="dksA"
                     /locus_tag="ROE18_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HDX3650403.1"
                     /translation="MKKNEIQNFKNILEERKKAILENLQSNSNEIEALHNSVPSDSVD
                     FSVIETGSQIDFAISTNLKEELIEIEDSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCRQIAEQGKKHEN"
     gene            complement(10392..10841)
                     /locus_tag="ROE18_000180"
     CDS             complement(10392..10841)
                     /locus_tag="ROE18_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HDX3650404.1"
                     /translation="MQVNIFCIQKSDEFKTCSEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKDLTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            complement(10843..11685)
                     /locus_tag="ROE18_000181"
     CDS             complement(10843..11685)
                     /locus_tag="ROE18_000181"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HDX3650405.1"
                     /translation="MNFADIFSKIRRQQPSVKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEINGLKTQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITSKTSLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            complement(11694..12416)
                     /locus_tag="ROE18_000182"
     CDS             complement(11694..12416)
                     /locus_tag="ROE18_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HDX3650406.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLCSKLGYDKNQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKASPKQMILDPLDGSSNFVSKIPFYGTSIALM
                     EKDQAKSAFVCNLVSQEIFAFNNKQAFKSNLSDPKYSPLTPNLFSKIGIVEKISLYPE
                     LLDFLTKNQLKFRSLGATALSLAYASYFSFVLILGKTRIFDTAAALAIHQNLYIEKNE
                     NFLLLSQDKKIFDIILEFLKNN"
     gene            complement(12416..14635)
                     /gene="bamA"
                     /locus_tag="ROE18_000183"
     CDS             complement(12416..14635)
                     /gene="bamA"
                     /locus_tag="ROE18_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HDX3650407.1"
                     /translation="MKKHLISICALVAMANAATIKDIKFIGLNHLSNTSAINIAGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNGILEIIVTEKPTIAKVTITGIASNDRK
                     QVESILGIKRGTLLDEGNIKEAIERIKAYYEAKSYFDTIVEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NAQTVKDLRSSAGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDDTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLINPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITVGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNNTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEIGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDDTNSFEFNLGTRF"
     gene            14712..15539
                     /locus_tag="ROE18_000184"
     CDS             14712..15539
                     /locus_tag="ROE18_000184"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HDX3650408.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALQL
                     GLIHELIEFKDLALCDMIFVATPVDAIIEILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNLLSSIDFFQQELERCKQMIQLDKNDELREWMKQANTLREIL"
     gene            15619..16992
                     /locus_tag="ROE18_000185"
     CDS             15619..16992
                     /locus_tag="ROE18_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDX3650409.1"
                     /translation="MVKRKGKTYLSVLILVLIAILIFFISRLSIFEKNPPQILMPDVV
                     YTDLKKPILVHIKDDESSIKNVQIILHKDDNTSAMVIADEKISNLKDITLQVALPKFG
                     YKENVKSFVLEVIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAG
                     AVVFKADDANLDKVYIETNKGKIFKATPYVKEGYYAALIAWDARDEEFRAFVIATDKA
                     GNISKERIRYYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNE
                     TLRNSNEKLIHEITSKVPEEKIDNFDLNLFLPLKNGMKVADFADHRYYSYNGQFVSDS
                     YHMGLDLASVAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSSKNVDL
                     DEMINKQSIIGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNDGK
                     KIILGKN"
     gene            16992..17876
                     /locus_tag="ROE18_000186"
     CDS             16992..17876
                     /locus_tag="ROE18_000186"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HDX3650410.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDERGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDAPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYTSYAGSHHLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            17915..18316
                     /locus_tag="ROE18_000187"
     CDS             17915..18316
                     /locus_tag="ROE18_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HDX3650411.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSLIYAN
                     GPGSYMGIKISYVSLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEIYLE
                     QNIPAEFFLPKNLQELKLNNDNLPFYFLDAI"
     gene            18325..19203
                     /locus_tag="ROE18_000188"
     CDS             18325..19203
                     /locus_tag="ROE18_000188"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HDX3650412.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGE
                     GSDNIFLKKNNIFVNIFYEIYEKLSGKKDNFRFIFQNNIPLSRGLGSSSAVIVGAIAS
                     AYYMSGFKVEKERILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLA
                     AVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKL
                     HEINRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALAKKIQTKFKD
                     FRVQYLEFDDNGFEIC"
     gene            19228..19485
                     /locus_tag="ROE18_000189"
     CDS             19228..19485
                     /locus_tag="ROE18_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HDX3650413.1"
                     /translation="MKKHIPIRMCIVCKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYL
                     CQNCIEREDKVLQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            19472..22087
                     /gene="infB"
                     /locus_tag="ROE18_000190"
     CDS             19472..22087
                     /gene="infB"
                     /locus_tag="ROE18_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HDX3650414.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEEKLKQEVKK
                     EELKIEKENAKEEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVK
                     NSNDISINNEERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHDFGDI
                     SLDDEDEVVLPDFSVKEQEKPQNINKKQPNFIRQAVGNSAGFGLEGGIQRRSRKKPSK
                     KIEKKEVEEVGSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIE
                     ILAAEFGIEINIINEADEFDYVKDYEEETDEKDLVTRAPVITIMGHVDHGKTSLLDYI
                     RKSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVV
                     AADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGS
                     YEFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATII
                     VQNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIA
                     VKTDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSL
                     EALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERS
                     KDKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCM
                     VTEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVG
                     DYIESYKEVEEQASL"
     gene            22084..22446
                     /gene="rbfA"
                     /locus_tag="ROE18_000191"
     CDS             22084..22446
                     /gene="rbfA"
                     /locus_tag="ROE18_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HDX3650415.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            22436..22858
                     /gene="rimP"
                     /locus_tag="ROE18_000192"
     CDS             22436..22858
                     /gene="rimP"
                     /locus_tag="ROE18_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HDX3650416.1"
                     /translation="MNLEALCKEAELSFYDDELVSENGRKIYRIYVQKEGGVNLDDCA
                     RLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELVKITTNEKEKFE
                     AKIIAVDDENITLENLENKEKTTINFNDIKKARTFVEW"
     gene            22905..>24193
                     /locus_tag="ROE18_000193"
     CDS             22905..>24193
                     /locus_tag="ROE18_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="McrB family protein"
                     /protein_id="HDX3650417.1"
                     /translation="MWNLDEKKLQEMHDGFLNFQEVWTLEKVKNMTLEEYTNIKKDNP
                     NRDDFTFWIESKLDNLGSIWGGSAFKFGIYRRNDESQKESSNGRLYSQNYAWIAKYGN
                     NENEAFNNIKEKIIQIIQASQDNNLKAIEKIDFGDAIKWKIAFHYQDVKNIKIVNIFS
                     KNVLDLISLNEFKEKLKIYQIHKKSLENKNLSLVKMIENIAIPLWNKYGMNSQNYIDK
                     MKNLFSEYLNKKKLDRNTINKYIQVIENISKEFLKENLYSCDLFSFDQNINKLNKNEE
                     FELKNSNGNNMYSSALNYYRAFLIDYYEQDIFITERVQSEESNMKIIPLNQILYGPPG
                     TGKTYRTIDKALEIISKEEKIQIPSEDDRINRKKLFDEYVKNGQIVFTTFHQSYGYEE
                     FVEGIKPIIDNDENSQEVKYDIKDGIFKKLCKKALDK"
BASE COUNT         8734 a         3122 c         4249 g         8088 t
ORIGIN      
        1 atataagcat taccatgaat ttaagagatg aagtaaaagt taaaaatgat taggagaaaa
       61 aaatgaaaaa aattgtagca atttttttag tctttttagg aagtctttgg gcagaagatc
      121 cagtgattga tgttgttaat tctggtgtag ttttaccaaa gattattgtt aaagacaatt
      181 caaatttaag tgatgagaat ttaaagaaaa gcttttataa tatcattgtg aacgatttga
      241 aagtaagttc aaactttgaa gttgttgcta atgcaactga gacaagtaat tatatttttg
      301 aatacacttt aaataaaaat ggtaacactt tgagtttaaa tgtaaaaata aaagctggcg
      361 gttctgataa gtcagagcaa acttatactt taaatggttt agagcaatat ccatttttgg
      421 cacataaaag tgtcaaagct tctgtaaatg cgttaggact tgcacctgtt gattggatgg
      481 atcataaaat tttgatcgcg agaaattcta gctctaaaaa aagtcaaatt attatggctg
      541 attatacttt aacttatcaa aaagttattg ttgatggtgg acttaattta tttccaaaat
      601 ggggaaataa agaacaaact ctattttatt atacagctta tgatcatgat aagccaactt
      661 tataccgtta tgatttaaat accaataaag ctagtaaaat tttatcaagt ggcggtatgg
      721 ttgtagcaag tgatgtgaat gtagatggaa gtaaactact tgttaccatg gctccaaaag
      781 atcagcctga tgtttattta tatgacttaa ataccaaaaa tctaacacaa ttaactaatt
      841 attctggtat tgatgttaat ggaaatttta ttggctcaga tgatagtaaa gtggtatttg
      901 taagcgatcg tttaggatat cctaatattt ttatgcaaga tttaaatagc aatagtgctg
      961 aacaagttgt ttttcatggt agaaacaatt cggctgtttc gacttataaa gattttttgg
     1021 tttattcaag tcgtgaacca aatcaagcag gtgtttttaa tatttatttg atgtcaatta
     1081 atagtgatta tattcgtcaa cttacagcaa atggaaaaaa tttatttcca agattttcta
     1141 gtgatggtgg aagtatagta tttatcaaat atttaggtgc gcaaagtgct ttgggtgtta
     1201 ttcgtgtaaa tgcaaataag actttttatt ttcctcttag ggttggaaaa attcaatcaa
     1261 ttgattggta aaaatttcaa ttttaggtta aaattaatta aaaattagat ataataataa
     1321 gaatttatta actttgaaag gtcataaatg aaaaaaattc tttttacttc aatcgcagct
     1381 cttgcagttg ttattagtgg ttgtagcaca aaaagcacta gcgtaagcgg tgatagtagt
     1441 gttgattcaa atcgtggttc aggtggaagt gatggttggg atattgattc aaaaatttct
     1501 caacttaatg atactttaaa taaagtatat tttgattttg ataaattcaa cattcgtcct
     1561 gatatgcaaa atgttgtaag cacaaatgct aatattttta acactgaagt aagcggtgta
     1621 agtattactg ttgaaggaaa ctgcgatgag tggggaaccg atgaatataa ccaagctcta
     1681 ggtttaaaaa gagcaaaagc tgtaaaagaa gctttaatcg ctaaaggtgt aaatgctgat
     1741 agaattgctg ttaaaagcta tggagaaaca aatcctgtgt gcactgaaaa aactaaagct
     1801 tgcgatgcgc aaaatagacg tgctgaattt aaattatcaa gataattaat gaaaaaaata
     1861 ttcacagtag ctcttcttgg agctacttta ctttatgcag aaagctcagc ttttggtgca
     1921 ggagatataa caagcaattc ttcttatggt ttaacttcaa atgaaaaatt atttaaagaa
     1981 aagttagata atttaaataa tgaaaatata caaacaaatg ctagaattaa tgaaattaac
     2041 gaaagaatcg agggtttaca aagcacttta gaaggtataa attctcaata tgccaaatca
     2101 aattctagat taagtcaagt tgaagagaat aatcaaaata ttgaaaataa ttttactagt
     2161 gaaattcaaa aattaaaggc ttatgttgaa gaaagtagaa aaattcaaga agctaataat
     2221 aagcaagtaa aaaaagtttt agccgaactt agttctttag tagatgctat taatgcaaat
     2281 tatgtttcta aaaacgaatt aaatgatgca aatttaagcg ttaaaactat tacacctagt
     2341 gttgttgttt caactacaga ttcaaatagt accattgaaa acaataatac tcaaaatacc
     2401 caagatgata aagcaaaaca aattgatgaa tcttggaaaa agaaaaaaaa taatgaaatt
     2461 ttagaattag cgataaaaga tgttgataaa aatgcttttg aagattccaa agcaaaatta
     2521 aattttctca taacaaagca gtataaacct gcaagagcaa atttttggtt aggggagatc
     2581 gagtataaac aaaaaaatta taacaatgct attgtttatt ataaaaaaag ttcttctttg
     2641 agtacaaaag gagattattt cccaaaactt ttatatcata ctgccatttc attggataaa
     2701 acaggtgata caaaaacagc aaatggtttt tataaagctt taaaaactaa ttatccaaat
     2761 tcacccgaag caaaagcttc acctaataga aaataaatta aggagataaa atggctatag
     2821 aaaaaaatag tgtagtttca atgttttatg agttaaaaga tgcaaataca aatgaagttt
     2881 tagaatcaaa tttatattct caacctattt cttttatttt aggcaaaggt cagattttag
     2941 aaagcttaga agaagaagtg atgaagcttg attgccctag caatgctgat gtggtaatta
     3001 aaaaagaaaa aggtttaggc gaatacgatg aaaatgccgt tcaaacttta ccaaaagagc
     3061 aatttgcagg tattgattta aaagtaggta tggagctttt tggcgaaggt gaaaatggcg
     3121 aaaccgttcg tgtaactgta aaagaaattg gtgaaaatga tgtgacaatt gattataatc
     3181 atccttatgc aggtcgtgat ttgctttttt ctttaaatat cgtagatgct agagctgcga
     3241 gtgaagatga aattcttaca ggtattatcg caggaagtca tagttgtggt tgtggaagcg
     3301 gacatggaca cgatcatcat cacggacatg gacatggtgg cggcggttgc tgtggtggcg
     3361 gcggttgcgg ttgtcattaa tgaatgctgc gtttatattt ccaggtcaag gctctcaaag
     3421 tcttggcatg ggaaaagatt tttatgaaaa ctctataaaa gccaaagaac tccttcaaaa
     3481 cgcaagtgat ttttgtaaga ttgattttaa acatttgctt tttgaagaaa acgaaaaact
     3541 caatcaaagt gaatttactc aacccgccat cgttttaaat tccttaatgg cttatagtgt
     3601 tttacttgaa aaaaaacctg atttaagttc gaaatttgct ttagggcatt ctttgggaga
     3661 attttcagcc ttagctgtca atggtgcttt tgatttttta gaggctcttt ctttggtcaa
     3721 taaaagaggg cttttcatgc aagaagattg tgcaaaagtt gaagcaggta tgatggtggt
     3781 tttggggctt gatgatgaaa aggttgaaga gctttgtcaa aaagcacaaa aagaaaacaa
     3841 gcaaattttc gctgcaaatt ataactgcga tggacaaatc gttgtagcag gtttaaaacc
     3901 tgatttagca agttatgaaa gtgtatttaa agaagcagga gctaaaagag ctatgctttt
     3961 aaatatgagc gtggcaagtc attgtcctct tttggaaaat gcttcagcta agctttgtgt
     4021 ggagcttgaa aaggtgttaa aaccaaattt taaagccgta atttctaatg caaatgccaa
     4081 aatttataca agcaaagaag aagcccttga gcttttaaaa gtacaactta tctctcctgt
     4141 gctttataaa caaagcatta aggcatgtga aaatgaagta gattatttca tagaatttgg
     4201 cgcaagtgtg cttaagggtt tgaataaaaa aatcacttca aaagaaactt atgctttaac
     4261 aaatatgaat gatattgatg aatttttaaa ggttgtatga tgaaaatagc aattttagga
     4321 gccatgagtg aagaaatcac tcctttactt gaaacactta aagattatac gaaaatagaa
     4381 cacgctaata atacttatta ttttgcaaag tataaaaacc atgaacttgt tttagcgtat
     4441 tctaaaattg gcaaggtaaa ttctactctt agtgctagtg tgatgataga aaaatttggc
     4501 gcacaagctt tgctttttac aggagttgca ggtgctttta atcctgaact tgaaattggc
     4561 gatttgcttt atgcaacaaa attagctcaa tacgatcttg atattactgc ttttggacat
     4621 cctttgggtt ttgttccagg taatgaaatt tttatcaaaa ccgatgagaa attaaacaat
     4681 cttgctttag aagttgctaa ggaattaaat atcaaacttc gtgcaggcat tattgcaacg
     4741 ggtgatgagt ttatttgcga tgaagcaaaa aaagcaaaaa ttagagaaat tttcaatgcg
     4801 gatgcttgtg aaatggaagg cgcaagtgtg gctttggttt gtgatgcttt aaaggtgcct
     4861 tgttttatct taagagctat gagtgataaa gcaggggaaa aggctgaatt tgattttgat
     4921 gagtttgtga tcaattcagc taaaatttca gccaattttg tgcttaaaat gtgcgagaaa
     4981 ttatgataaa tcttagcaaa aaactcatac gccaagttgc acaagctaat gctaaatttg
     5041 gacttattaa agatggagat agggttcttt tagggcttag tggcgggaaa gattctttgg
     5101 ctttagccca tcttttaaat cgtatgcaag ctcacgctcc ttttaaattt gaacttgaag
     5161 cggtaacttt gagttatggt atgggcgagg attattctca tcttcatgca cattgtgaag
     5221 aacacggcat taaacatagc gtgcttgatt caaatattta tgaagtttca agcgatacca
     5281 taagagaaaa ttcaagtttt tgtagttatt tttcgagaat gcgtcgtgga gctttatata
     5341 cttacgctct tgaaaaaggt tttaacaagc ttgctatagc tcatcattta gatgatgcag
     5401 cagaaagctt ttttatgaat tttattcata atggagcttt aagaacctta gcgcctattt
     5461 atcaaagcaa acgcggtata actgtgatac gccctttgat ttttgtgcga gaaagacagc
     5521 ttagggataa tgctacgcaa aatgaactta gcgtgatagg aaatgaattt tgtcctggta
     5581 tgaaactcag cgaaaaaaat gtgaaatttc cacacgctag agaagaagct aaacagcttt
     5641 tagcaaattt agaaaaagat catcctaagc tttttacaag cttaaaaact gcttttacaa
     5701 atttacacac agaaagtttt tggcttcaaa aggcataaaa gcatgaaaaa agcttttgtt
     5761 ttagtggatt atcaaaatga ttttattgat ggaagtttag gttttgataa ggctttaaaa
     5821 atcaaagaaa atattcttaa agccttaaat caaatcgatt ttaataacac gcatttgctt
     5881 ttaacctatg atacgcatga tgagcattat ctacaaagta aagaaggttt aaatttacct
     5941 gtaaaacatt gcattaaaga gagtttgggt tggcaaatgc caaaggaatt tgaacctttt
     6001 ttacaaaaag ctcataaaat tttttataaa aatacttttg gtagcttaga attagctaat
     6061 ttcatacaaa aaagtgatta tgaagaactt cattttgcag ggcttgtttc tcatatttgt
     6121 gtgttttgta atattatttt agcttttggt gctaagccta atgcaaggat aattttacac
     6181 caaaatttaa gtgcaagttt tgatgaaaat ttagaaaaat ccgcttttga tatacttagg
     6241 gcttatggta ttgaaattgt ttaatgcaag gctttatact tcatactcaa aaagttaaag
     6301 atgaggattt gattgtttat attttaagtc ctaaaatgct tattaaggct tatcgttttt
     6361 atggacttag acattctagt attttaagcg gctataaaat cgactttgct ttagaagaaa
     6421 atcctagttt tttaccaaga cttaaagatg tattgcattt gggattttta tggattatgc
     6481 aaagggataa aatgcttatt tggcaagaat ttatccgtct tttatatagg cacttaaaag
     6541 atgtagaaga gcttgatagt ttttattttg atttacttga tgagtgtgtg aaaaggtttg
     6601 aaaaacaaaa tccaaagcgt gttattgttg atgcttattt aaaaattttg gaatttgaag
     6661 gaagattgca taaggatttt ttttgttttg cctgtgatga gaaaatccaa aattccatta
     6721 cactgctaag ggctttttta ccttcgcatt ctcaatgtgc tttaggattt gagtttgaag
     6781 agaaaaaact aaaacaattt tatagcagta aaaattgtgc gatttttgat gatgaagaaa
     6841 tagaaaattt atatcatttg attaaggaag gtttatgata ttaagtgatg aaaaatgtga
     6901 ttttttagaa tctatagcaa gttttttaag tcctaaagat gtggagcttg tctttgtgga
     6961 tagtaaagaa atgcaagaaa ttaacttaga gcaaagaaaa caagataaaa ctactgatgt
     7021 actttctttt ccgcttgaaa atatcgatga gagtttgcct ttgggttctg ttgtgatcaa
     7081 tgtagatttg gcaaaagaaa aggctaaaga gttagggcat agctatgaag aagaaataag
     7141 cttgcttttt atccacgcta tgcttcattt gttaggtttt gatcatgaaa atgataatgg
     7201 agaaatgaga gaaaaagaga aagaacttat agagcatttt aatttaccta aaagtttgat
     7261 tgtaaggact ttggaagatt aagtaagatt tttttcaagg gctagaagac ttgcgcttta
     7321 tattttaaat atatgagtaa aaatattaaa aaaatcattt ttgccgattt actttagaat
     7381 aaaatttatt ccaaggtgat aaagatgata gtatttcctc taagctcttt taatagatat
     7441 tttggaaaca atcctttgca aacacttacc aaaataagag atgaaagtat tgaaaatgga
     7501 aatcccgagc ttacaaaaaa acaaagagaa gaattaggta atgatttgat agatttgtat
     7561 aagatttcta aaaaattcag cgataaaata gaattagtcg agggttcaat agaagataag
     7621 cttagaaaca atgaattacc agaatcagaa gttaaaaatt tatttcaatg gatggatgaa
     7681 aatgctaaac accctcgttg gatgcatatt gatggcgtga gttatgatga agcttatgtt
     7741 aaaatttttc acacaagcaa aagtatagat gaatttaaag aaaaatatct tgagcttcaa
     7801 aaaaaatatt ttgttgattt taacaatatt gattcatcgc agaaaaaatt gcaagaaact
     7861 tcagaagaag acaaaaaagc tttcaaacct atacaagtag aaagtaaaag cgaaacctac
     7921 aaagatgata ataaaatgaa tgagctttta agaaaactac tagaaactaa atttggcaca
     7981 agcgatgagc tagaaattct ttttggtatg aattttagca atgataatgc aggggaattt
     8041 aataaaattc tttctcaaaa cacttcagca aaaattatag atattaaggc ttaagatttt
     8101 ttaaattata aaaatcaatc aagttaaact aaaaaattct tctatttttt ttcgcatttc
     8161 ttcgacattg tcgatacgat taacggtatc tctaaaggct gaagcgtctt tatgcccttt
     8221 agaatactcg tgtaaatgct tgcgaaatat acttacgcct tgatctttgt agtgttttat
     8281 catttcatca aaatgagtga gtatgatttc ttttttgagt ttttcatcta cacttttacc
     8341 gcttttgatt tcataaaata tccaaggatt tcctacgctt gcacgcccta tcatgagtcc
     8401 atcacatttt gtgattttat aaacttcttt agcgttttgt gcgttaatat cgccatttgc
     8461 aatcacagga attttcacgc tcgctttagc actagcaatg gattcataat cggcttttcc
     8521 gctataaagc tgttttcttg tgcgtccatg aatacttaca aaatccaccc ccaagctttc
     8581 acaaatttta gccatttttt caggatattt ttcattaaat cctagtcgaa atttcacact
     8641 tgtaaggctt tttttattgt tttctttaat cactcctaca agatttttaa aaagctctaa
     8701 attttctagc aaagcactgc cagcacattg tttaacaact ttatttacag ggcaaccgca
     8761 attaaaatcg atcccatcta caaaatccat ttcatttagc atttgcactg ctttttttag
     8821 cacttcttta tctccacctg caatttggac tatataggga ttttctaatt cagctctttc
     8881 tagcatatgt aaagttttag aactttcata aactaaggca ttagaactta tcatttcact
     8941 tatggtaata tcagcaccaa atttttttac tacattacga aaaggcagat ctgaaaaacc
     9001 tgccataggg gctaaaaaca ggggtttttt gctaaaatct atcattgtat gagttgattt
     9061 agatcgattt tgatattttt ttcacgcaag gctaaaaagg ctttaaaatc attaaatttt
     9121 ttatcatcat tgtgaatttg ttctcttaac tcatctaaaa gtccaaattc agccaaaaga
     9181 tataaatatg ctcttaaagc ttcgcttttt tcatttttaa ttttgttaaa aattcctaaa
     9241 atagcatcag gatttaaaag tttagtactt agttttgctg cattaagata gtctttttcg
     9301 cttaatatgt tgtgtgaaag taaaacttca tattctgcta cactaagttc taaatttcct
     9361 tctttaaaac gcttgataag tgtgagaact tcagaaggct ttttagggat ttttacattt
     9421 ttaatttgct cataactagc tttttctata agagtgttaa aagcaatttc ttcaaattca
     9481 tctttgattt cattaaggtt tttaagtttg ttataggcat aatttgcatc atttttgaga
     9541 tgattttttt cattttgcaa atataaaaca ttgttatttt cgagtttaaa tttgctaagg
     9601 ttaaaaaatt cgtttttatt taaaccatca ataagatcta aaatttcatt gattttattt
     9661 gagtgtggaa ttttttcatg tgtttttatg gttttaaaaa gttgtgctac agatctaaat
     9721 tcttttgttt gaaaagtggt tttaagatct ttttcaagaa gtaaatcttg agtataagct
     9781 tcaaatttag ctgcgtcttt aaaaaaatgc ttaaatttta aataacgcaa aaatccataa
     9841 aatgctatgt gtaaaacggc taaaatcata taaataaata aaggaataac aagccatatc
     9901 ataataggta gttcaaaggt ataagtgctg atatttagag tatagcttcc tagttctaga
     9961 tgccaagcaa aggcaaaaat aagtgctata taaataaaac ttgcaagtaa gaagagttta
    10021 attttcatgt ttttttcctt gttctgcaat ttgacggcaa gtgatacaat atcttgcgtg
    10081 aggtttgact tttagtcttt gagagtcgat ttcatcatcg caagattcgc aaattccata
    10141 agtgccgttt ttgattttat ctaaagaatc ttcgatttct ataagttctt ctttgagatt
    10201 ggtgctgata gcaaagtcaa tttgagagcc tgtttctatg acagaaaaat ctacactatc
    10261 gcttgggacg ctattgtgaa gagcttcgat ttcatttgaa ttgctttgca aattttctaa
    10321 gatagctttt tttctttctt ctaaaatatt tttgaaattt tgtatttcat tttttttcat
    10381 tttaaaactt tctatttgtg ataagggtga ttgttgttga tgcaaaatgc acgataaatt
    10441 tgttctaaaa gtaaggtttt aacaaattga tgtgctaaag taagtttgct taatgatagt
    10501 ctaaaatcca aactttgatt aaattcttct cttaaaccat aagcacctcc tataaaaaaa
    10561 cttaattcat ttttatcttg gatgagtttt gcaaattcta tacttgtaag atctttccct
    10621 ttttcatcaa gagcgataca atagcctttt ttataaggca taaaagcttc ttcatagctt
    10681 ttttttgctt ctatggcatt taaattttga gctaaggcta tttttttatt aaaaacattt
    10741 atttctttta aagtggcgta tttggagatg agtttagagt atttctcact acaagtttta
    10801 aattcatcac ttttttgaat acaaaagata ttaacttgca aattattttc cactaaaaaa
    10861 ttttagtaca tcgctaagat attgtttttg ttctcctctt tcaactatgg catctataag
    10921 tccatgttct aacaagaact ctgctttttg aaaaccttca ggtaaatctg ctcctatagt
    10981 ttgtttaata actcttgcac cagcaaaacc tactaaagct tcaggttcag cgatgattaa
    11041 atctccaagc caagcaaaag aagcacttac tccacccata gtaggatcgg ttaaaatgct
    11101 aatataagga agtttttctt tgctaagaag tttaagtgca gcactagttt tgctcatttg
    11161 catcaaagaa taagtacttt cttgcattct agctccaccg cttgcactta cgatgacaag
    11221 agaagttttg cttgtgatag ctctttgtat agctctaaca attttttctc cttcaacaga
    11281 acctaaagat ccgcccataa aagaaaaatc aaatacaaca agttgggttt ttaaaccatt
    11341 gatttcacat tctccactga tgacagaact ttttctacct gttttacttt caccttcgct
    11401 aaggcgtttt ttataggatt tgctatcaac aaattttaaa ggatctatag cttctaaatt
    11461 tgcatcatac tcaataaaac tgccttcatc gcttaaaagt ttaatacgtt catcagctga
    11521 aattctcatg tgataattgc atttaggaca aacattaaaa caagattcta tttctttata
    11581 atacatcaaa gcatgacaac tttggcactt tacccagtga tttggcgctt ctttaacgct
    11641 aggttgttgt cttcttattt ttgaaaaaat atctgcaaaa ttcatatatt cacctaatta
    11701 ttttttaaaa attctaagat tatatcaaaa atttttttgt cttggcttag gagaaggaaa
    11761 ttttcatttt tttctatata taaattttga tgaattgcta aagcagctgc tgtatcaaaa
    11821 attcgtgttt ttccaagaat taatacaaaa ctaaaatacg aagcataagc aagacttaag
    11881 gctgttgcac ccaaagagcg aaattttaat tgattttttg ttaaaaaatc gagaagttct
    11941 ggataaagtg aaattttttc aactatacct attttagaaa atagattagg tgttaagggt
    12001 gagtattttg gatcggaaag attggattta aaagcttgtt tgttattaaa agcaaaaatt
    12061 tcttgactga caagattgca aacaaaagcg ctttttgcct gatctttttc cataagagct
    12121 atagaagttc cataaaatgg tattttagaa acaaaatttg aacttccatc caaaggatca
    12181 agaatcattt gttttgggct agcttttccg atcaatccgc tttcttcaga aaaaatttgt
    12241 ccaaaacaac taagatattt tatgaaaatt tgttcacatt ttaagtcaag ctcatagcct
    12301 tgatttttat catagcctaa tttagagcaa agtttaagat cattttgtgg gatattgttt
    12361 agatacttgc gtatttgcaa atttgcattc aagcaagcat ctaaaaattc tttcattaaa
    12421 agcgtgttcc aagattaaat tcaaaactat tagtatcatc acctttttta tcattaagag
    12481 gtttggcaaa tacaagttgt aaaggtccaa taggtgtaat ccattcaatg cctatacctg
    12541 tactcattct ttttatttca tctaaatttt tacgccctat cataccataa tcaaaaaaca
    12601 cgctaccacg aagtttgatt ctatcaatca aaggaaaact aagttctacg gaattggcaa
    12661 aagctatggt tccgcctatt tcatctcccc attgattttt aggacttact gttctgcttt
    12721 caaaaccgcg tatcgatcta ataccaccta aataaattct ttggttaatt ggtaaataac
    12781 cttcatccca tactttataa aaactcgctt tatagcgata aataagatca tatcctatat
    12841 agtcttgcaa accttgataa aagttaaatt tagagcttga tgaaataaat tcttgatctc
    12901 cgccaagtcc agcgtattct aaactagttg aagcaataat acctgatcgt ggcagataat
    12961 aatcatctgt attgttaaag gtgattgctg gagttataga gcttttaata cttttgccaa
    13021 gttcatatcc tgttcttaaa agagttggac ttaagtggta tatatcgctt tgttcaagat
    13081 tataagttaa gcttacatta tagtatcttg caaattggcg tccaactgtt atatcaaagc
    13141 cgtaattttt ttctgaataa ttatcccatt catagtcatt tgaataaagt gttccaccca
    13201 gactatattg actatcaaga acgcgtggat ttatgagact aatccttcct gataaggtat
    13261 catcgctttt atctacgctt acagagcttt ttattcctga accaaagata tttgtatctg
    13321 ataaagaagc gttaagcaaa ataccatcgc ttgatccata gccaatgcct ccagaaatag
    13381 ctcctgtaga agcttcttta acatcaacaa tcaaatcaat atgtgtatca tcaacttttt
    13441 cttctttgat atttacatcg tcaaaataag aagttctttt taaagcattt tttgactcgc
    13501 ttaagtctgt tctattatat aaattacctt ctgttatata taattctcgg cgtatgacgc
    13561 gatctacggt gcgtgaattt cctgaaataa taacatttct tatataaact ttatcgtgag
    13621 ggattacttt aaatacaacg gtggcttctt gagtttgatc atttttttga atatcaggat
    13681 agacttctac aaacgcataa cccaaatcag cactttgtgt ttctatggtt ttaacatctt
    13741 ttctaatgtc ttcgatattg atagttttgc cagcgcttga tcttaaatct tttacggttt
    13801 gtgcattttg cttatcatca aataaaggat tttctatgct tatactttta attttataag
    13861 gctttccttc tttgataaaa taagtcaaat ttgcttgata agtatctgtg taggttttaa
    13921 gataagggga ggatacttga acatctaaat atcctttttt catatattca tcagcaattc
    13981 ttgaactatc gttactaagt tcaaaaactt ttaattttcc atcattgcgt ccccacatcc
    14041 atcccataaa ttctttttct ttgttaacaa cagcaggttc tatatcagaa tatgaaaatt
    14101 tctttgctcc acttaaatga acattatcaa taatgatatt ttcaccacga tttactataa
    14161 attcaagctc tagtccatca gtattttcta aagtcttttt tttgtattct acaatagtat
    14221 caaaataact ttttgcttca taataagctt taatgcgttc aatagcttct tttatatttc
    14281 cttcatcaag tagtgtacct cttttaatcc ctaaaatact ttcaacttgt tttctatcat
    14341 ttgaagctat acctgtgata gtaacctttg ctatagttgg tttttcagta actataattt
    14401 ccaaaattcc attgttgttt tctactgcaa tattttcgaa ataattttgt ttataaagat
    14461 taagaatagc agtgttgatt tttgcaggat ttatttcctc gcctatttta agccccgcga
    14521 tatttatagc gcttgtgttc gataaatgat ttaatccgat aaatttaata tctttaatgg
    14581 ttgctgcatt ggccatagca actaaagcac aaatactaat aagatgtttt ttcattgatt
    14641 ttttacctaa agctttatta aaagctgtat aatagcaaaa aaaatttaac aaaaaaacta
    14701 aggtagaaag tatgaaaata gcaattatag ggcttgggct tatgggtgga tctttagggc
    14761 tttgtttgaa agaaaataag cttatttctt gtgtttatgg tatggattta agcaaagaaa
    14821 atgaaaaaga tgccctgcaa ttaggtctta ttcatgagct tatagaattt aaagatttag
    14881 ctttatgtga tatgattttt gtcgcaactc ctgttgatgc tattatagaa attttgcaaa
    14941 agttagttga tttgccttct aatgtaacaa ttatagagct tggaagtaca aaaagaaaaa
    15001 ttatagaaag tttgcctaag aatttaatca aacaaactct ttttgctcat cctatgacag
    15061 gaactgaaaa ttcaggtcca aaagcagctt ttaaagagct ttataaagat gcagtttgtg
    15121 ttctttgtga tagtgaaata gctgatgatt tacatcaaaa aagagcggta gaaatttttt
    15181 ctcatttagg gatgaaaatt gtttttatgg atagtaaagc ccatgatcat catgctgcta
    15241 ttatttctca tttgcctcat gttataagtt tttctttggc aaattttgta atgaaggaag
    15301 aagataaaag aaatattgtt catttagccg gaggatcttt taaaggtatg agcagaattg
    15361 ccaaatcatc gccacaaatg tgggaaagta tttttttaca aaataaagat aacttattaa
    15421 gttctattga tttttttcaa caagaattag agagatgtaa acaaatgata caattagaca
    15481 aaaacgatga attaagagaa tggatgaaac aggctaatac cctaagagaa attttataaa
    15541 tttgctagat atttactgaa aatataatag aatttatatt aaaagcaaca aaaacattga
    15601 aaatttttaa ggaaggttat ggtaaaaaga aaaggcaaaa cttatttatc tgttttaatt
    15661 ttagttttaa tagcaatttt gatttttttt atttcaagat taagtatttt tgaaaaaaat
    15721 cctcctcaaa ttttaatgcc agatgttgta tatactgatc ttaaaaaacc tattttagtg
    15781 catattaaag atgatgaaag ttctatcaaa aatgtacaaa ttatattgca taaagacgac
    15841 aatactagtg caatggttat agcagatgaa aagatttcta atttaaaaga tattacctta
    15901 caagttgctt tgccaaaatt tggttacaaa gaaaatgtaa aatcttttgt tttggaggtg
    15961 atagctaaag attctagttt ttggaatttt tttagtggca atgaagcaag aaaacaaatt
    16021 gcggtattag tagataatac ggctccaaaa atcaatatca taagcaattc ttaccaaatc
    16081 gagcaaggcg gtgccggggc agttgttttt aaggctgatg atgctaattt agataaggtg
    16141 tatatagaaa caaataaagg taaaatcttt aaagccacac cttatgtaaa agaaggatat
    16201 tatgcggctt tgattgcttg ggatgcaaga gatgaggaat ttcgtgcatt tgttatcgct
    16261 acggataaag cgggcaatat ttcaaaagaa cgtataaggt attattttgt taatcgtaaa
    16321 tatcgtgttt caaatatcaa tctaacggat aaatttttag atggaaagat tgagaattta
    16381 gcaaatcagt acgctccaaa agataataat ctcaatcgtt atgaaaaatt taagtttgtc
    16441 aatgaaactt taagaaatag caatgaaaaa cttatccatg aaatcacttc aaaagtacct
    16501 gaggaaaaaa ttgataattt tgatttgaat ttatttttac ctcttaaaaa tggtatgaaa
    16561 gtagcggatt ttgctgatca taggtattat tcttataatg ggcaatttgt gagtgattct
    16621 tatcatatgg ggcttgatct agcaagcgta gcacaagctc ctatcataag taataacgca
    16681 ggcaaggttg tttttgctgc tgaaaatgga atttatggtt taaatttaat tgtttatcat
    16741 ggttttggag tatatagtct ttatgggcac tgttcttcta aaaatgttga tttagatgaa
    16801 atgattaata aacaaagcat tataggcaaa acaggaacaa gtggtttagc cttaggcgat
    16861 catttgcatt ttggagtttt ggttcaaggg gttgaaacgc gtcctgaaca atggcaagat
    16921 aaaaaatgga tagaaaataa tatttacaat gttttaaatg atggtaaaaa gataatttta
    16981 ggaaaaaatt aatgaaacaa ttaactttag caaaaactgt caaaggcgta ggtataggac
    17041 ttcataaggg tgaacccata gaaattactt tagagccttt agaagcaaat agtggtatag
    17101 tattttttag aagtgatctt aatgcaagct ataaggcaag tcctgaaaat gtgatcaata
    17161 ctcaaatggc aactgtttta ggagatgaaa gagggtttat ttctacaata gagcatttaa
    17221 tgagtgcgat taatgcttat ggaatcgata atgtacgcat agttttaaat gcaaatgaag
    17281 ctcctgttat ggatggatca agtattagtt tttgtatgat gcttgatgaa gcaggggtaa
    17341 aagaacttga tgcgcctaaa aaaattatgg taattaaaaa gcctatagaa gtaagagatg
    17401 gtaataaatt tgtgcgttta actcctacta aagaaccccg tattaattac acaattaaat
    17461 ttgacaatgc tgttataggt gaacaaagtt acaattttga attcagcaaa aaaaattata
    17521 tagaaaacat agcaagagct agaacttttg gttttttaaa agatgttcaa gctcttagga
    17581 gtatgaattt agcactaggt ggaagtttag aaaatactat agtggtagat gaaaatcgta
    17641 ttttaaatcc tgaaggtttg cgtttcaaag atgagtttgt aagacataaa attttagatg
    17701 caattggaga tttaacctta cttggatatc gtgtttttgg ggattatact tcatatgctg
    17761 ggagtcatca tttaaatcat ttactcacta aagaagtttt aaaagataaa gatgcttatg
    17821 aaattgtaag ccttgaaaaa acaacccaaa aagcttatga aaaggtattt gcataaaaac
    17881 ttctctttta cttaatactt tatctaagcc tttaatgatc ggaatttatc aagatgataa
    17941 acttataaaa acttataaaa gtgaagaaaa agcaagcgaa tttttaccaa aaattttaga
    18001 tgaattgctt aaagaatatg attttacaag tttaatctat gctaatggtc caggttctta
    18061 tatggggatt aaaatttctt atgtaagttt gagtacttta agtatagtaa aaaatattcc
    18121 tttatttgcg gtgagtgctt ttgaattaaa tggctataaa cccataagtg caaataaaaa
    18181 tttttgtttt gtatataagg aaggtgaaat ttatttagag caaaatatcc cagcagagtt
    18241 ttttttacca aaaaatttac aagagcttaa actaaataat gataatcttc ccttttattt
    18301 tttagatgca atttaggatg aaatttgaaa attttagttc cagctacgag tgcgaattta
    18361 gggccaggtt ttgattgttt aggacttagt ttaaagcttt ttaatgaaac tcaaatccaa
    18421 aaatcaggtg tttttagcat tagtattgga ggcgagggaa gtgataatat ttttcttaaa
    18481 aaaaacaata tatttgtaaa tattttttat gaaatttatg aaaaactaag cggaaaaaaa
    18541 gataattttc gttttatttt tcaaaataac attcctcttt caagaggatt aggaagctct
    18601 tcagctgtga ttgttggagc tattgccagt gcttattata tgagtggatt taaggtagaa
    18661 aaagaacgta ttttagatga agctttaatt tatgaaaacc atccagataa tatcgctcca
    18721 gctactcttg gtggttttgt gtgttctttg gttgaaaaaa ataaagttta tagtatcaaa
    18781 aaagagattg ataaagattt agctgctgtg gttgtgatcc caaatttggc aatgagcacg
    18841 gaacaatcac gccaagcttt ggccaaaaat ttaagtttta atgatgcggt tttcaacctt
    18901 tctcatgctt catttttaac cgcttgtttt ttggagaaaa aatatgaatt tttaaaattt
    18961 gcaagtcaag ataagctcca tgaaatcaat cgtatgaaaa acttacccga gctttttgaa
    19021 gtgcaaaaat ttgccttaga aaataaagct ttaatgagca cactttcagg ttcgggatcg
    19081 agcttttttt ctttagcttt taaagatgac gctttagctt tggcaaagaa aatacaaaca
    19141 aaatttaaag attttcgtgt gcaatattta gaatttgatg ataatggctt tgaaatttgc
    19201 taaaaaatat aaaaaaaaga tataattttg aaaaaacata taccaattag aatgtgcata
    19261 gtgtgtaaaa accgctttga gcaaaatatg ttatttagat ttaaagttgt tttaggagat
    19321 attgtgccta aagcagaaca tggaagaagc ggatatttat gtcaaaattg tattgagaga
    19381 gaagataaag tcttacaaaa agcattttct aaaatatgta aaaatttaaa tactaaaatt
    19441 actcagcaag gacttaagga gatattttta aatggcaaag attagaattc atgaaatcgc
    19501 aaaagaatta ggttatgata gtaaggaaat tattgaaaag gcaaatgaat taggacttgg
    19561 aattaaaaca gcatcaaatg ctgtagaacc tgagattgcg gcagctattt atgagtatat
    19621 acaaacaaga gaaattccag aagcttttaa gaaaaatatc aaaactccta cggcaaaaaa
    19681 gcctaaaaaa gaaaatataa aagaacaaga aaagctaaat gaatctgaaa aaaaagaacc
    19741 taaaaaagaa gaaaagctta aacaagaagt taaaaaagaa gaattaaaaa ttgaaaaaga
    19801 aaatgcaaaa gaggaagaaa aacaagaaat tattgatgct cataagccac aaagccttgc
    19861 tagtgcaact ttagccaaaa gacgcggact tgttattgtt aaaaagaaaa aagacgaaga
    19921 agaaattcaa gttaaaaaag aagaagtaaa aaattcaaat gatatatcta tcaataatga
    19981 agagcgctta agtttaaaaa ctatgttttc aaatgctgat gagagtttaa agaaaaagaa
    20041 aaaagaaaaa aaatcttttg ttgcgagtaa aaaagaaagt accgaaaaaa tgaatttttt
    20101 agatgaacat gattttggtg atatttcttt agatgatgaa gatgaggtag tattacctga
    20161 ttttagtgta aaagaacaag aaaaaccaca aaatatcaat aaaaaacaac ctaattttat
    20221 aagacaagct gttggaaatt ctgcgggttt tgggcttgaa ggtggaattc aaagaagaag
    20281 tcgtaaaaaa ccatctaaaa agattgaaaa aaaggaagta gaagaagtag gtagcgttgc
    20341 tatttctaaa gaaattcgtg tatatgaatt cgctgataag ataggaaaaa gcactagtga
    20401 agtgatttca aaacttttca tgcttggaat gatgacaaca aaaaatgatt tcttagatga
    20461 agatgcgatt gaaattttgg ctgctgaatt tggtatagag atcaatatca ttaacgaggc
    20521 tgatgagttt gattatgtaa aagactatga agaagagact gatgaaaaag atttagtgac
    20581 tagagcacct gtgattacca tcatggggca tgttgatcat ggtaaaactt ctttgttaga
    20641 ttatattaga aaatcacgcg ttgcaagtgg tgaagcaggg ggtattactc agcacgtggg
    20701 tgcttatatg gtagaaaaaa acgggcgtaa aattactttt attgatactc caggtcacga
    20761 agcttttact gctatgcgtg caaggggtgc aagtatcact gatattgtaa tcatcgttgt
    20821 agccgcagat gatggggtaa aaccacaaac taaagaagcg ataaatcatg ctaaagcagc
    20881 aggtgtgcct attattattg ctattaataa aatggataaa gaagcagcaa atcccgatat
    20941 ggtaaaaact caactcgcag aaatggaaat catgccagta gaatggggcg gatcttatga
    21001 atttgtagga gtttcggcta aaacaggaat ggggattgaa gatttgcttg aaatcgtgct
    21061 tttacaagct gatattttag aacttaaagc caatccaaaa agttttgcta aagcaagcat
    21121 tatagaaagt tctgtgcaaa aagggcgtgg tgcggtggct actatcatcg tgcaaaatgg
    21181 aacacttact gtaggaagta ccgtggttgc aggcgaggct tatggaaaag tgcgtgcgat
    21241 gagcgatgat caaggtaaag ccttaaaaga aattaaacca ggcgaatgtg gggttatcgt
    21301 agggcttagt gaagtagcag atgcaggtga aattttaatc gcagtaaaaa ccgataaaga
    21361 agcaagagaa tatgctaata aacgccacga atacaatcgc caaaaagaac ttagcaaatc
    21421 cactaaagtt agcattgatg agcttggagc taagatcaaa gaaggtaatc taaaagcctt
    21481 gcctgttatt ttaaaagctg atgtgcaagg ctctttagaa gccttaaagg caagtttaga
    21541 aaaacttaga aatgatgaga ttaaagtgaa tatcattcat agtggagtag gaggaatcac
    21601 gcaaagtgat atagagcttg caagtgcgag tgaaaactct atagtactag gttttaacat
    21661 acgcccaaca ggggaagtta aagagcgttc taaagataaa ggcgtagaaa ttaaaactta
    21721 taatgtgatt tataatcttt tagatgatgt aaaagccttg cttggtggta tgatgagtcc
    21781 gattatttct gaagagcaat taggacaagc agagattaga caagtgatca atgtgccaaa
    21841 aatcggacaa attgcaggtt gtatggtaac cgaaggggtg attaaccgtg gggctaaaat
    21901 tcgccttatc cgtgatggag ttgtggttta tgagggaaat gtaagctcac ttaaacgctt
    21961 taaagatgat gctaaagaag tggcaaaagg ctatgaatgt ggcgtaggta tagaagggtg
    22021 cgatgatatg agagtgggtg attatataga aagctataaa gaagtagagg aacaagcaag
    22081 cctatgaacc caagtgagat taaaaaacta cgcactgaaa gtatcttaaa agagctaatc
    22141 cctgaagctt tagcaaattt agatgatgaa aatttgaaaa atttgtgtgt agtggatgta
    22201 gagtgtaaaa aaggcagata tgatgctttt gtgtatcttg ataagatgtt ttttaatgtt
    22261 catgagcaag aaaaaatttt atcttcttta aaaaaggcaa gtagagcttt gcaaaattac
    22321 tgcatgagtg agcagggttg gtataggtgt ccgaattttc attttaaatt tgatgatagg
    22381 cttgagtatc aaaaccatat ggatgcactt tttgaaaaaa taaaaaagga taaaaatgaa
    22441 tcttgaagcc ctttgcaaag aagcagagct tagcttttat gatgatgagc tagtaagtga
    22501 aaatggcaga aaaatttata gaatttatgt gcaaaaagaa ggtggggtaa atcttgatga
    22561 ttgtgcaagg cttagtgaaa ttttatcgcc tatttttgat gtagagccac ctgtaaatgg
    22621 ggagtatttt ttagaagtat cttcaccagg acttgaaaga aaacttagca agatagaaca
    22681 ctttgctaaa agtataggtg aacttgtgaa gatcacaacc aatgaaaaag aaaaattcga
    22741 agcaaaaatc attgctgtag atgatgaaaa tatcacttta gaaaatttag aaaataaaga
    22801 aaaaactact ataaatttta atgatataaa aaaagctaga acctttgtgg agtggtaaga
    22861 aatctaaata tgatttaaaa atagcataat ttaaggattt ggtaatgtgg aatttagatg
    22921 aaaaaaaatt acaagaaatg catgatggct ttttaaattt tcaagaagta tggactttag
    22981 aaaaagttaa aaatatgact cttgaagaat atactaacat taaaaaagat aatccaaata
    23041 gagatgattt tactttttgg atagaaagca aattggataa tctaggaagt atttggggtg
    23101 gctcagcttt taaatttggt atatatagaa gaaatgatga aagtcagaaa gaatcttcta
    23161 acggtagatt atatagtcaa aattatgctt ggattgctaa atatggcaat aatgaaaatg
    23221 aagcatttaa taatatcaaa gaaaaaatca tacaaataat acaagcaagt caagataata
    23281 atttaaaagc tatagaaaaa atagattttg gggatgcaat taaatggaaa atagcttttc
    23341 attatcaaga tgtaaagaat ataaaaatag ttaatatttt ttctaaaaat gttttagatt
    23401 taatatcttt aaatgaattt aaagaaaaat taaaaatata tcaaatacat aaaaaatcat
    23461 tagagaataa aaatttatca ttagttaaaa tgatagaaaa tatagctatt cctttatgga
    23521 ataaatatgg catgaatagc caaaattata tagataaaat gaaaaattta tttagtgaat
    23581 atttaaataa aaagaaatta gatagaaata ctataaataa atatattcaa gttatagaaa
    23641 atatatcaaa agaattttta aaagaaaatc tatatagttg tgatttattt agttttgatc
    23701 aaaatataaa taaattaaat aaaaatgaag aatttgagtt aaaaaacagc aatggaaaca
    23761 atatgtattc tagtgcattg aattattata gagctttttt gattgattat tatgaacaag
    23821 atatttttat aactgaaaga gtgcaatctg aggaatcaaa tatgaaaatt atacccttaa
    23881 atcaaattct ttatgggcct ccagggacag gaaaaactta tcgtactata gataaggctt
    23941 tagagattat atcaaaagaa gaaaaaatac aaattccaag cgaagatgat aggataaata
    24001 gaaaaaaatt atttgatgaa tatgtaaaaa atggacaaat agtatttact acttttcatc
    24061 aaagctatgg atacgaagaa tttgtagaag gcataaaacc tataatagac aatgatgaaa
    24121 attctcaaga agtaaaatat gatataaaag atgggatttt taaaaagctt tgtaaaaaag
    24181 ctttggataa aaa
//
LOCUS       DAPOLW010000007        21706 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.007, whole genome shotgun sequence.
ACCESSION   DAPOLW010000007 DAPOLW010000000
VERSION     DAPOLW010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21706)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21706)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21706
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.007"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            3..275
                     /locus_tag="ROE18_000194"
     CDS             3..275
                     /locus_tag="ROE18_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650418.1"
                     /translation="MSFTDFYFDREEKRIYNQTKELIANEFESKENLENIFANLQDFK
                     NSLEISLEDDEEIAISLQAYGDEFIRNAYELLDRVRKFEKHCKKLF"
     gene            834..1103
                     /locus_tag="ROE18_000195"
     CDS             834..1103
                     /locus_tag="ROE18_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650419.1"
                     /translation="MKAYHTKEQVIIKLSKDEYRKEMKLNKYLKDENKSLKTEISNLE
                     NEKIELLKELKDQIEANMKNIKEISSLQNKIYELLYAKERSKLCS"
     gene            1094..1348
                     /locus_tag="ROE18_000196"
     CDS             1094..1348
                     /locus_tag="ROE18_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650420.1"
                     /translation="MFLNSKKNEKIRYLEKEIQRLKGVIALKDTAINEISLKLEEEIK
                     INVKLSNFRIKILDALGLIGVFKNDDKAIKEVKRLKDKEL"
     gene            1345..1497
                     /locus_tag="ROE18_000197"
     CDS             1345..1497
                     /locus_tag="ROE18_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650421.1"
                     /translation="MKKQTKPLSIRIPLELKEELQKIADKEYRPLATQIVKILSDYVK
                     NKNKTN"
     gene            complement(1490..1687)
                     /locus_tag="ROE18_000198"
     CDS             complement(1490..1687)
                     /locus_tag="ROE18_000198"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650422.1"
                     /translation="MEEKQKTNKSEIISIRLDTVTKNKLAYICELEYRPMALQIRKII
                     EDYINAYESENSLWQKGDYPN"
     gene            1830..2012
                     /locus_tag="ROE18_000199"
     CDS             1830..2012
                     /locus_tag="ROE18_000199"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650423.1"
                     /translation="MSQEEKFLECLAKATKGKKDLSNFEVLEFAFSIFCCLDNYIQNN
                     KARDKKILKLLKGDEK"
     gene            2009..2752
                     /locus_tag="ROE18_000200"
     CDS             2009..2752
                     /locus_tag="ROE18_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage regulatory protein/antirepressor Ant"
                     /protein_id="HDX3650424.1"
                     /translation="MNLELFRKDENKEISLTSLEIAELTGKEHFNVIRDIETYLEKVV
                     EGGVFKFEDTYQNTQNKQSYKCYRLPKREVLILVSGYSVELRAKIIDRLEYLENELKK
                     QSYKPLSLKESLQMQLELLERNEKLQIENVNLKNEAKENAPLIHFANRIKDTNDAILI
                     RDFAKILYEKNKIEIGEKRLFAFLRDNGFLMSDNKPYQKCIEQGLFKVSETTISTING
                     DRLVSTTKITGKGQIKIANLLLEGINHAV"
     gene            2742..3596
                     /locus_tag="ROE18_000201"
     CDS             2742..3596
                     /locus_tag="ROE18_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaJ viral recombinase family protein"
                     /protein_id="HDX3650425.1"
                     /translation="MQYKIIDLEQGSPEWLNFRKGKIGASMVASCVGIKGAFNSKEEA
                     RDIILGLKEVYQNEAMKKGNNYEALIRARVEFLHSVSITPVVLQSLENEMFIASLDGI
                     DENGVVYEFKYSQDEYDFIKRNKKPSDKYYAQVQFQLYISGKEKCIFVAMNKEEEIVE
                     CEVSKDEAYQEWLVKNIKQFILDYIIDQKSEYKELEDTKAKNLTIEIIRLENTIKPIK
                     EKLESLKKELIALANGEKARCLDITIYPQSRTTIDYKGFLEQKNITVPKEFYKESISM
                     CLKIKKGA"
     gene            3598..4335
                     /locus_tag="ROE18_000202"
     CDS             3598..4335
                     /locus_tag="ROE18_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650426.1"
                     /translation="MSNEVVLKEENKLEINFNPYELALVKGDLSKLSDVERASYVKNL
                     CESLGLNMLTKPFEYIVLNGKLTLYANKSATDQLRQIRKVSITKTEVAQVGDIYMVTA
                     YAATPDGRTDCDTGALNIKNLGGDNLANAIMKAITKAKRRVTLSICGLGMLDESELET
                     IKEKRFLNPNEDLKVWGSDEKIALENKAKEIKALGAELRKFMSDNGLNTQEQNSFIKK
                     HSLFTSEKIQEVLSNKDEFLTQLKGEL"
     gene            4335..5030
                     /locus_tag="ROE18_000203"
     CDS             4335..5030
                     /locus_tag="ROE18_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650427.1"
                     /translation="MLPAFKASFEVANYAPSVEYLNEGGLYSGVFRKAFLYEKIASDG
                     SNNTFICFEFLTRKEQKLAIFNLFVAKNNDFSYINKNGEKENYLGFRQLNAIMKFFGI
                     DELDFSKKGNENVFGVQTEVIYLNSLVNKLLVLGFGTEEYLSKNGELANKIFLDRIFN
                     EKMQSMDEFQNNKEPLFIKSFKARHKSLNNDNNKSFIPKENQSYNPYGNEVKNNNNEK
                     YIEIGDDDESLPF"
     gene            5011..5289
                     /locus_tag="ROE18_000204"
     CDS             5011..5289
                     /locus_tag="ROE18_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650428.1"
                     /translation="MKVCRSNYLEIVKIIPFSERRTCFCEFAKQNEIKIEKINYKNHI
                     SKKELRKAYKIYKSKPHRKNFFNEEKLIVKAFEDVLKFLRGKNETKFI"
     gene            5270..6022
                     /locus_tag="ROE18_000205"
     CDS             5270..6022
                     /locus_tag="ROE18_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDX3650429.1"
                     /translation="MKPNLYNDHFQNFKRYNIPKAQLVIADIPYNLGNNAYASSPEWY
                     INGDNKNGESKKANKAFFDTDNDFRVSEFMHFCSKMLIKEPKECGKSPCMIVFCSFEQ
                     QTMLIEVAKKYGFNHYINLVFRKQNSSQVLKANMKIVGNCEYALILYREKLPKFNNDG
                     KMIYNCMDWQKDEGVPKVHPTQKPVKLLERLITIFTDAGDVVIDPCAGSGSTLLAATN
                     LNRKAYGFEIKKDFFKSANEIMFKHIERSLFA"
     gene            6137..6679
                     /locus_tag="ROE18_000206"
     CDS             6137..6679
                     /locus_tag="ROE18_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HDX3650430.1"
                     /translation="MGILKRLDKTIIIENDRKSEKELVEYCILEGISLNDANLENINL
                     SGLDFNNAFINGASFKNANLNDISSKNTSFIDCDFSGASFHFCNFLRTEFENCIFENV
                     DLRDCIGDMKNIFSVVLDTYVMTFTKTMMNLGCDTKTIKEWRNLSVDDLEDEEQKWLW
                     NYYKDTIFEIIDKRLGVENG"
     gene            6672..6911
                     /locus_tag="ROE18_000207"
     CDS             6672..6911
                     /locus_tag="ROE18_000207"
                     /inference="COORDINATES: protein motif:HMM:NF024139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDX3650431.1"
                     /translation="MVRLDIGDYYTRKEVANLLKVKEPIVHKYAKQGKFREFKQHRNC
                     SGLYPKHDIENFIKKYFGLVDLDQQSHQDNLPTTA"
     gene            complement(6838..8037)
                     /locus_tag="ROE18_000208"
     CDS             complement(6838..8037)
                     /locus_tag="ROE18_000208"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012798.1,HMM:NF024750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDX3650432.1"
                     /translation="MLNDTKIKALKAKDKKYYIADFDNLLLCIYPSGKKTFIFNYKCP
                     KTLRYKRITLGEYPTLNLANARKQRDNLKVNLAENDSIREKSEITFKELALEKMDLKK
                     LELSEKTYKRYMSYLQRFAFGIYGEIILDKLQIKDILKSFEKFRKENIREGADKFFTL
                     LNEIFRHGVIKEYIKSNPMANLNRKELLINKASKNHATLLETKEIKALIDNIIDYKGY
                     ISVKIAAMFSLLTAQRSFSIRSAKWEDIDLDNGVWYIPQEDMKMKRAHTIPLNSQCVY
                     MLKKYKEMSINTGYLFYSLRSKSEIISDNTIRSMFRRMGYSNDDFTPHGFRAMFSTLA
                     HENRNKHQMSSDIIELCLAHVEKNKIKSAYNHALNLKEKAILMQWWGDYLDEIADLNQ
                     QVRNIFL"
     gene            complement(8236..8321)
                     /locus_tag="ROE18_000209"
     tRNA            complement(8236..8321)
                     /locus_tag="ROE18_000209"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8285..8287),aa:Leu,seq:gag)
     gene            complement(8356..8694)
                     /locus_tag="ROE18_000210"
     CDS             complement(8356..8694)
                     /locus_tag="ROE18_000210"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HDX3650433.1"
                     /translation="MKKVLFLLLACTAVAFAAETNAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVLQ"
     gene            8927..10261
                     /locus_tag="ROE18_000211"
     CDS             8927..10261
                     /locus_tag="ROE18_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDX3650434.1"
                     /translation="MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFTMVGAILIVSFYT
                     LVIGWIVKYVFLSITGNLPMDLEVSKAQFGFFISEDFLSQFICFTLVFLCVFYIVSKG
                     VKNGIEKLNVWMMPSLFILLILMLVYAISKDGFIMAVKFLFVPDFSKINTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYN
                     PNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVSMIEPFTFYLINTF
                     GMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSVSSKVIMPLGGIL
                     AAIFVGFVMKKEALKILFKPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK"
     gene            10274..11614
                     /locus_tag="ROE18_000212"
     CDS             10274..11614
                     /locus_tag="ROE18_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDX3650435.1"
                     /translation="MRTYFSKIGFVLTVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFVLSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNLITTNLTSSVFFFTLSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFLHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGVGIVFISLMSLFNQLGALGYIFAFCFFLALFFAGITSAVSMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLTSNFLLPLGA
                     IVCSIFVGFFMNKKQIYKIFSKFISRKIFLIWLFFIRFISPIAIILVMCYQIFV"
     gene            11646..13445
                     /locus_tag="ROE18_000213"
     CDS             11646..13445
                     /locus_tag="ROE18_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin attachment protein"
                     /protein_id="HDX3650436.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFTMMDRFRAIVGKDANLQTLARGVNTVTLDTGSSELID
                     LHAKLFAKHGTTTIRNFDALNDINNLKFSGECIAKHGLKHEIAITLMDLPPNCKGAHD
                     VPFYEKILKEILAAEIPFHSICFKDASGTSNPNKIYETIKMARKILPQDMHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTMMHALKGKDYDLGGLEEEKI
                     LKYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGSWKKIAEGYGKMVLGYFGKTPVAPD
                     ANIIELASKQLNLEPTTELAINIADKDESKSIAYTKTLLEKEGIETSEENIFVAAACK
                     EKGIAFLKGEAKVNIRKLASMPKPMSADENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEVLAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIISELCIKIGDTVNEGEVLAIYKN"
     gene            13458..15032
                     /gene="pckA"
                     /locus_tag="ROE18_000214"
     CDS             13458..15032
                     /gene="pckA"
                     /locus_tag="ROE18_000214"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HDX3650437.1"
                     /translation="MKKFDKLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKVNQPITKELFDKLLTKAKQELSGKKIYVQ
                     DVFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     HEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     ITKCEFENFEVFDLAIPKALEGVESVLLNPINTWLDKNAYIATRDKLAHMFIQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            15042..16424
                     /gene="argH"
                     /locus_tag="ROE18_000215"
     CDS             15042..16424
                     /gene="argH"
                     /locus_tag="ROE18_000215"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HDX3650438.1"
                     /translation="MKNEMWSGRFSGASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVRSEIEQGKFIFDIKDEDIHMAVEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELIKLLKELIQTMLEHAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDIKRLQNSLELADFSPLGSCACAGTSYATNRELSAKIL
                     GFKDIMPNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGIFDSV
                     KTAKDSLIILNAMLKEIQINKENMLNACKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEAQGIDISEIKDLSKIDPVFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(16446..17549)
                     /gene="ychF"
                     /locus_tag="ROE18_000216"
     CDS             complement(16446..17549)
                     /gene="ychF"
                     /locus_tag="ROE18_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HDX3650439.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPERIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGAK
                     ESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVDENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(17546..18997)
                     /locus_tag="ROE18_000217"
     CDS             complement(17546..18997)
                     /locus_tag="ROE18_000217"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HDX3650440.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKIFNKEKDFFKLNNYKG
                     EGVLLDLNNKKLYLELKSLAYEDIRLSLCTAYKTLEKLNIKSVKLPSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTSTLEKFIISSEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNIICKIYDEKFLAKEKMNAFLAVNRA
                     SIHPPRLIHLSYKAKNAKKRVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAVMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVVGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPHLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGAGGAGVRMCVNYLIQILRKAK"
     gene            complement(18994..19590)
                     /locus_tag="ROE18_000218"
     CDS             complement(18994..19590)
                     /locus_tag="ROE18_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDX3650441.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKRYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS"
     gene            complement(19609..20157)
                     /gene="apt"
                     /locus_tag="ROE18_000219"
     CDS             complement(19609..20157)
                     /gene="apt"
                     /locus_tag="ROE18_000219"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HDX3650442.1"
                     /translation="MIKLTQEEKKYLLDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLRHLKERYKDYNLDFIAGTESRGFIFASMICAKLNLPFVPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLMN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            complement(20154..20486)
                     /locus_tag="ROE18_000220"
     CDS             complement(20154..20486)
                     /locus_tag="ROE18_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650443.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            complement(20486..20923)
                     /gene="rpiB"
                     /locus_tag="ROE18_000221"
     CDS             complement(20486..20923)
                     /gene="rpiB"
                     /locus_tag="ROE18_000221"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HDX3650444.1"
                     /translation="MLREKIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCD
                     YPDYAHLLAEKINKRSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDA
                     NVLALGGRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
     gene            21089..21643
                     /locus_tag="ROE18_000222"
     CDS             21089..21643
                     /locus_tag="ROE18_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HDX3650445.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDVKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLAKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
BASE COUNT         7663 a         2858 c         3599 g         7586 t
ORIGIN      
        1 aaatgagttt tacagatttt tattttgata gagaagaaaa aagaatttat aaccaaacaa
       61 aagaattaat tgcaaatgag tttgaaagca aagagaattt agaaaatata tttgcaaact
      121 tgcaagattt taaaaactct ttggaaataa gcttagaaga tgatgaagaa atagcaatat
      181 ccttacaggc ttatggagat gaatttataa gaaatgctta tgagctttta gatagagtta
      241 gaaaattcga aaaacactgc aaaaagcttt tttaaaagtt taacaagtcc tttaaaaaag
      301 ggctttttaa gcttttgacc gcttgaaaat taagctttac tattgcgttg atagttctgt
      361 atagcggaag ggttagcaag ttatccataa acttggctcg ctattattgt ttatagtgct
      421 atttttaatg ttttcttgca ctttaaaaac gacagaaaat caagagttta agaaaaagaa
      481 agtataatta taaagtttaa gttgctaact tgtctcggtg ttgagaaagg aggctctaaa
      541 atgtgggata aaattttaac aattttaatc ttaatcttag agctaattag agaacttata
      601 aaactctaat attttttaac acagataaat tttaactaaa tccgcttagc ataaacttaa
      661 acaactatac aacgccgaga ttgcggattt gctcggcttt tcttaagctc ctttaatgct
      721 taaatggggc aacttttaca aattaactac ttgtgagatt ttatcttttt gtttttattt
      781 cctattctaa agaactcagt tgtccctttt aagcattaat caaaggagaa aaaatgaaag
      841 cttatcacac taaagaacaa gtcatcataa aactaagtaa agatgaatat agaaaagaaa
      901 tgaaattaaa taagtattta aaagatgaaa ataaatcttt aaaaactgaa atttctaatc
      961 ttgaaaatga aaaaatagaa cttttaaaag agttaaaaga tcaaatagaa gcaaatatga
     1021 aaaatataaa agaaattagc tctttgcaaa ataaaattta tgagcttctt tatgcaaaag
     1081 aaaggtcgaa actatgttct taaatagtaa aaaaaatgaa aaaataagat atttagaaaa
     1141 agaaattcaa aggctaaaag gtgtaatagc attaaaagat actgctataa atgaaatttc
     1201 attgaagcta gaagaagaaa ttaaaatcaa tgtaaaactt agtaattttc gtataaaaat
     1261 acttgatgct ttagggctta taggcgtttt taaaaatgat gataaagcta ttaaagaagt
     1321 aaaaagatta aaggataaag aattatgaaa aaacaaacaa aaccgctaag tataagaatt
     1381 ccattagaat taaaagaaga gttgcaaaaa atagcagata aagaataccg ccctttagca
     1441 actcaaatag ttaaaatttt aagcgattat gttaagaata aaaataaaac taattagggt
     1501 aatcaccttt ttgccataat gaattttcgc tttcataggc attaatataa tcttcaatga
     1561 tttttcttat ttgtaaagcc atagggcgat actcaagttc gcatatatag gcgagtttgt
     1621 tttttgttac agtatcaagc cttatcgata ttatttctga tttattggtt ttttgtttct
     1681 cttccaatgt tttccttttt gtaatttatt gtaattttac aaaaaaaact tttttttgta
     1741 aagcatacat tgtattactt gacaatacaa aaataatttt atataatttt gtaattctta
     1801 agaatacaaa aaattacaaa aggataccaa tgagccaaga agaaaagttt ttagaatgtt
     1861 tagcaaaagc gactaaagga aaaaaggatt taagcaattt tgaagtattg gaatttgctt
     1921 tcagtatatt ttgttgcctt gataattata ttcaaaataa caaggctaga gataaaaaaa
     1981 ttttaaaatt attaaaagga gatgaaaaat gaatttagag ctgtttagaa aagatgaaaa
     2041 caaagaaata agcttaactt ctttagagat agcagagctt acaggcaagg agcattttaa
     2101 tgttataaga gatatagaaa cttacttaga aaaagtggtt gaagggggtg tcttcaaatt
     2161 tgaagacacc taccaaaaca cacaaaataa gcaatcttac aagtgttacc gcttaccaaa
     2221 aagagaagta ttgattttag tgagtggata tagtgttgag ctaagagcaa agataatcga
     2281 tagattagaa tacttagaaa atgagcttaa aaaacaaagt tataaaccgc tttcattaaa
     2341 agaaagtttg caaatgcaat tagaactttt agagagaaat gaaaagcttc aaattgaaaa
     2401 tgtaaattta aaaaatgaag ccaaagaaaa cgcaccactt attcactttg caaatcgtat
     2461 aaaagatact aatgatgcta ttttaataag agatttcgca aaaatacttt atgaaaaaaa
     2521 taaaattgaa attggagaaa aaagactttt tgctttttta agggataatg gctttttaat
     2581 gagtgataac aaaccttatc aaaaatgcat agagcaaggg ctttttaaag taagtgaaac
     2641 aactatcagc acaataaatg gagatagatt agtaagcaca acgaaaatca caggcaaagg
     2701 acaaattaaa atcgcaaatt tattattaga aggaattaat catgcagtat aaaataatcg
     2761 acttagaaca aggtagccct gaatggctaa attttagaaa aggtaaaata ggtgcatcga
     2821 tggtagcatc ttgtgtaggt atcaaaggtg cttttaattc caaagaagaa gcaagagata
     2881 tcattttagg acttaaagaa gtttatcaaa atgaagctat gaaaaaaggc aataactatg
     2941 aagctttgat tagagctaga gttgagtttt tacattctgt gagtatcact cctgtagttt
     3001 tgcaaagtct agaaaatgaa atgtttatag cgagcttaga tggtattgat gaaaatgggg
     3061 ttgtttatga gtttaaatat tcgcaagatg agtatgattt tatcaaaaga aataaaaagc
     3121 caagtgataa atactacgct caagtgcaat ttcaactcta tatcagtggt aaagaaaaat
     3181 gcatttttgt agccatgaat aaagaagaag agattgtaga gtgcgaagtt tcaaaagatg
     3241 aagcttatca agaatggttg gttaaaaata taaagcaatt tatattagat tatatcatag
     3301 atcaaaaaag tgaatataaa gagcttgaag atactaaagc aaaaaatcta acgattgaaa
     3361 ttataaggct tgaaaacacg attaaaccta ttaaagaaaa gctagaaagt cttaaaaaag
     3421 aactcatagc cttagcaaat ggagaaaaag caagatgttt ggatattaca atttatccgc
     3481 aaagtagaac tacaattgat tataaaggct ttttagagca aaaaaatatt actgtgccta
     3541 aagagtttta taaagaaagt atttcaatgt gtttaaaaat caaaaaagga gcataaaatg
     3601 agtaatgaag ttgtattaaa agaagaaaat aaattagaaa taaattttaa tccttatgag
     3661 ttggctttgg taaaaggtga tttatcaaaa cttagtgatg tagaacgagc gagttatgtt
     3721 aaaaatcttt gtgaaagttt aggtttaaac atgcttacaa agccttttga atacatagta
     3781 ttaaacggaa aacttacttt atacgcaaac aaatcagcaa cagatcagct aagacaaata
     3841 agaaaagtaa gtattacaaa aacagaagtg gcacaagttg gtgatattta tatggttaca
     3901 gcctacgcag caacaccaga tggaagaact gattgcgata caggtgcttt aaatattaaa
     3961 aatttaggtg gcgataattt agcaaacgca ataatgaaag ctatcacaaa agcaaaaagg
     4021 cgtgtaacct taagcatttg cggacttgga atgcttgatg agagtgaatt agaaacaata
     4081 aaggaaaagc gatttttaaa tccaaatgaa gatttaaaag tttggggtag tgatgaaaaa
     4141 atagccttag aaaataaagc aaaagagata aaagctttag gtgctgaact tagaaaattt
     4201 atgagtgata atggtttaaa cacccaagag caaaacagtt ttataaaaaa acattcttta
     4261 tttacaagtg aaaaaataca agaagttcta agtaataaag atgaattttt aacacaatta
     4321 aaaggagaat tataatgtta ccagcattta aggcaagttt tgaagtggca aattatgcgc
     4381 caagcgtaga gtatttaaat gaaggtgggc tttatagcgg agttttccgc aaagcctttt
     4441 tatatgaaaa gatagcaagc gatggaagca ataatacttt tatttgcttt gaatttttaa
     4501 ccagaaaaga gcaaaaacta gctattttta atctttttgt agctaaaaat aacgatttta
     4561 gctatatcaa taaaaatgga gaaaaagaaa attatttagg atttaggcaa ttaaatgcca
     4621 ttatgaaatt ctttggaatt gatgaacttg attttagcaa aaagggaaat gagaatgttt
     4681 ttggagtgca gactgaagtt atttatctaa attctttagt taataaactt ttagttttag
     4741 gttttggaac agaagaatat ttaagtaaaa atggagaact tgctaacaaa atctttcttg
     4801 atagaatttt taatgaaaaa atgcaaagca tggatgagtt tcaaaataat aaagagcctt
     4861 tatttataaa atcttttaaa gcaaggcata aatctttaaa taatgacaat aataaatcat
     4921 ttattccaaa agaaaatcaa agctataatc cttatggaaa tgaagtaaaa aacaataaca
     4981 atgaaaaata tatcgaaata ggagatgatg atgaaagttt gccgttctaa ttatcttgaa
     5041 attgtaaaaa tcataccatt tagtgaaaga agaacttgtt tttgcgaatt tgctaaacaa
     5101 aatgaaataa aaatcgagaa aataaattat aaaaatcaca taagcaaaaa agaactcaga
     5161 aaggcttaca aaatttacaa aagtaagcct cataggaaaa acttttttaa tgaagaaaag
     5221 cttattgtaa aggcttttga agatgtttta aaatttctaa ggggtaaaaa tgaaaccaaa
     5281 tttatataac gaccattttc aaaattttaa aagatataat ataccaaaag cacagcttgt
     5341 aatagctgat attccttata atttaggcaa caatgcttat gcttcatctc ctgaatggta
     5401 tataaatggg gataataaaa atggagaaag caaaaaagca aacaaggcat tttttgacac
     5461 agataatgat tttagagtta gcgaatttat gcacttttgc tcaaaaatgc ttataaaaga
     5521 acctaaagaa tgcggtaaaa gtccttgcat gattgttttt tgctcttttg aacaacaaac
     5581 aatgttaatt gaagtagcta aaaaatatgg ctttaatcat tatataaatt tggtttttag
     5641 aaaacaaaac tcatctcaag ttttaaaagc aaatatgaaa atagttggaa attgtgaata
     5701 tgctttaatc ttatatcgtg aaaaacttcc aaaatttaat aatgatggca agatgattta
     5761 taactgcatg gattggcaaa aagatgaagg tgttcctaaa gtacatccca cacaaaagcc
     5821 tgttaaatta ctagaaagat taatcactat ttttacagat gcaggcgatg ttgttataga
     5881 tccatgtgct ggaagcggaa gtactctttt agcagctaca aatttaaacc gcaaagctta
     5941 tggctttgag attaaaaaag acttttttaa aagtgctaat gaaattatgt ttaaacatat
     6001 agaaagaagt ctatttgctt aagtaaagtt ttggtaaaat tataaaactt aaattatggt
     6061 tagaattaaa tattaaaatc ttggaattaa atattaaaaa aattgagctt ttagaaaaaa
     6121 gaattaagga gttaaaatgg gaattttaaa aagattagat aaaactatca ttatcgaaaa
     6181 tgatagaaaa agtgaaaaag aattagttga gtattgtatt ttagaaggga tttctttaaa
     6241 tgatgcaaac ttggaaaata taaatttaag tggattagat tttaataatg catttataaa
     6301 tggagctagt tttaaaaatg ctaatttaaa tgatatttca agtaaaaata catcttttat
     6361 agattgcgat tttagtggag caagtttcca tttttgtaat tttctaagaa cagaatttga
     6421 aaattgtata tttgaaaatg tagatcttag ggattgtata ggagatatga aaaatatctt
     6481 tagcgttgtc ttggatacct atgttatgac ttttacaaaa actatgatga atttaggttg
     6541 tgatactaaa acaataaaag aatggcgtaa tttaagcgtt gatgatttag aagatgaaga
     6601 acagaaatgg ctttggaatt attacaagga tactattttt gaaattatag ataaaagatt
     6661 aggagttgaa aatggttaga ttagatatcg gagattatta cacaagaaaa gaagttgcaa
     6721 atcttttaaa agtaaaagag cctatagttc acaaatacgc caaacaaggc aaatttagag
     6781 agtttaaaca acatagaaat tgctcaggat tgtatcctaa gcatgatatt gaaaatttta
     6841 taaaaaaata tttcggactt gttgatttag atcagcaatc tcatcaagat aatctcccca
     6901 ccactgcata aggatagctt tttcctttaa atttaaagca tggttatacg cagatttaat
     6961 cttatttttt tctacatgcg ctaaacacaa ttctataata tcgctactca tttggtgttt
     7021 atttctattt tcatgggcta gggtgctaaa catagcacga aagccatgag gtgtaaaatc
     7081 atcattagag tagcccattc ttctaaacat ggatctaatt gtgttatcgc ttataatttc
     7141 acttttactt cttaaactat aaaataaata acccgtatta atactcatct ctttgtattt
     7201 tttaagcata tatacacatt gagaatttaa aggtatagta tgtgctcttt tcatcttcat
     7261 atcttcttgc ggtatatacc aaacgccatt atccaaatca atatcttccc attttgcact
     7321 tcttatacta aagcttcttt gtgcagttaa taaagaaaac attgctgcaa tttttacact
     7381 aatatatccc ttgtaatcaa ttatattatc tattaatgct ttaatttctt tagtttccaa
     7441 caaggtggca tgatttttac tcgctttatt tataagcaat tcttttctat ttagatttgc
     7501 catggggtta cttttaatat attcttttat aacaccatgt ctaaaaattt catttaaaag
     7561 agtaaagaac ttatcggcac cttctcttat attttctttt ctaaattttt caaaactttt
     7621 taaaatatcc ttgatttgca atttatctaa tataatttct ccataaattc caaaagcaaa
     7681 tctttgtaaa taactcatat atcttttgta ggttttttcg cttaattcaa gttttttaag
     7741 atccattttt tccaatgcta attctttaaa tgttatttca gacttttctc ttatactgtc
     7801 attttcagct aaatttactt ttagattatc tctttgtttt ctagcgttag caagattgag
     7861 agtagggtat tctcctagag ttattctttt gtatcttaaa gttttaggac atttataatt
     7921 aaatataaaa gttttcttac cgctcggata aatacaaaga agtaggttgt caaaatcagc
     7981 aatatagtat tttttgtctt tagcttttaa ggcttttatt ttggtatcgt ttagcacttt
     8041 tattccttta ggtcaataaa gtcaatagca aattttagct aggtcaataa caaagtcaat
     8101 aaaaaatatc tgcaagtata ataaattaaa ataaattaaa aataatctaa aacaattaga
     8161 tatctacgaa aagcctattt tatagatgat taaaaagaag taaaaaaaat tgaaaaaagc
     8221 taaaagaagt ataaatggtg cggttagcga gatttgaact cgcacacgcg gagcgcacca
     8281 ccccctcaag atggcgtgtc taccaattcc accataaccg catagaaaaa agcccaaaaa
     8341 gggctttgat aagttttatt gtaaaactat aaaaggattt gcgtaaagtg ctattagcgc
     8401 gataacaaga gcatagataa cttgtgcttc aatcatcgct aaagcgataa acatagttgt
     8461 cattaatttt ggcccaagac cagggtttct agctgttcct gcaattgttg ccgctgcagt
     8521 attacccata ccgatagcac caccaagtgc tgcaacacca agacctaagc ctgctgcaag
     8581 aactgaaaat gctttaatcc atacattaat agcttcttgc tctactggag cattagtttc
     8641 agctgcaaaa gctactgctg tacatgctaa taataaaaaa agaacttttt tcattatctt
     8701 aacctttcta taaaaaaatt tttttcaatt tttaaatcag ttcggcttgc gtatccctac
     8761 ttaagactta aaaataaatt cgaattataa ccaaaagtat ctttattttt attgaaattt
     8821 acaaaaattc acatttttga tttaaatttg attgttttca ataaagctta aaagtttttt
     8881 tgctttaata atattttaaa ataattttta agtcaaggtt gtaacattga gttctaaatt
     8941 ttcaaaaata ggtttcattt tagcggtagc aggttcagcg gtgggcttgg gtaatgcttg
     9001 gaaatttcca acactagtag gtcaaagtgg tggatctgct tttatcttgc tttatataat
     9061 tcttacttta ggtgtaggtt ttgtgatatt tttagctgag cttagcatag gaaaaattag
     9121 tgaaaaagat ccggttaatg cctatgaaaa gttagcacct tcaaataaaa aagcttggtc
     9181 ttatgttggt tttactatgg tgggggcgat tttaatagtt tctttttata ccttggtgat
     9241 tggctggata gttaaatatg tgtttttaag tatcactgga aatttgccta tggatctaga
     9301 agtaagtaaa gcacagtttg gattttttat aagtgaggat tttttaagtc agtttatttg
     9361 ttttactttg gtttttttat gtgtttttta tattgtttct aaaggtgtta agaatgggat
     9421 tgaaaagtta aatgtttgga tgatgccttc attgtttatt ttgcttattt tgatgcttgt
     9481 ttatgctatt agcaaagatg gttttataat ggcggttaaa tttctttttg tacctgattt
     9541 ttccaaaatc aacacttcaa atgttcttga agccttagga cttgcttttt ttagtctttc
     9601 tttgggcgtt ggaacgatta ttacttattc tgctagtctg cctgataaaa ccaattttat
     9661 taccagtact ttaaatatta tttttatcaa tcttttagtt ggtttattaa tgggtttggt
     9721 tgtttttact tttatctttg agtttggtta caatcctaat cagcaaggac caggacttgt
     9781 ttttatttcc ttggctactt tatttgaaaa aattggagtg attggttgta tttttggagc
     9841 agcgtttttt atttctttaa tctttgctgg tattacttca gctgtttcaa tgatagagcc
     9901 tttcactttt taccttatta atacttttgg tatgagccgt aaaaaagctt tgattttaat
     9961 aggaattgtt gtttatattt taggaatgtt gtgtatttta tcttctttaa aaagtactca
    10021 gtttggattt tttggaatga gtttttttga tttgcttgat agtgtttcaa gcaaggttat
    10081 tatgccttta ggtggaattt tggcagctat ttttgtggga tttgtgatga aaaaagaagc
    10141 tttaaaaatt ttatttaaac cttatatgag gggtatattt tttgaacttt ggtatgtgtt
    10201 tttgagattt atttcccctt tggctgttgt tatagttatg atagccgctt ttttaaagtg
    10261 agtttgaaaa ataatgagaa catatttttc aaaaatcggt tttgtattga ctgttgctgg
    10321 tggagccgtt ggtttaggta atgcttggaa atttccaact ttaagcgcag aaaatggtgg
    10381 ttttgttttt gtgcttttat atttgttttt tactttaact ataggattta gtattttttt
    10441 ggctgaagtg gctatgggac gtttaagtaa aagtgatctt gcaaatgctt attcaaatct
    10501 tgccataaaa tatggcaata gatggcgata tggcggcgtt tttatgttag gtggtatttt
    10561 tgtcctctct ttttatctag ttatcatggg atgggtttta aaatatactg tagtgagtct
    10621 ttattatctt cctaaaactt tagatgaagc agcaagtaat tttcagaatt taattactac
    10681 aaatttgaca agttctgttt ttttcttcac tttatctttt tttcttactt tattgatagt
    10741 atctaaaggt ttaatcaaag ggattgaaaa attaaacgtt gttataatgc ctagcttatt
    10801 tttaatgctt gtttttatgt tgttttattg catgggattt aagcaaggtt ttgcaaatgc
    10861 tttttcttat ttattttatc ccgatttttt acattttaaa ttcagctcta ttgccgaagc
    10921 tttagggctt gcatttttta ccttatgctt gggaataggt tgtatagtta catattcatc
    10981 ggccttggat aaaaaaacaa attttataaa aagttcagtg tatattgttt tgattaattt
    11041 attgatttct tttatcatgg gacttattgt ttttactttt atctttgaat ttggagccga
    11101 tccgcatact caaggagtag gaattgtttt tatatccttg atgagtttgt ttaatcaact
    11161 tggagcttta ggctatattt ttgcattttg ttttttctta gcactttttt ttgctggtat
    11221 tacttcagct gtttcaatga tagagccttt aactttttat atgattaata actatcaaat
    11281 ttctcgtgtt aaagctctat ttttaatagg tttatttgtt tttgtttttg gaatttgttg
    11341 tatcttgtca ttaaatttaa attttttttc tatgtttagt ttttttggta aagatttttt
    11401 tactttatta gataaattaa cttcaaattt tttacttcca cttggtgcta tagtatgctc
    11461 tatatttgta ggttttttta tgaataaaaa acaaatttat aaaatttttt ctaaatttat
    11521 aagtcgaaaa attttcttaa tttggttgtt ttttattcgt tttatatcgc ctatagcaat
    11581 aattttggta atgtgttatc aaatttttgt ataataatga aaaaatattt ttttaaggaa
    11641 aaataatggc taaaaaattc atcgatgtaa tggatacaag ctttagggac ggttttcagt
    11701 ctgtttatgg agctagggtt ttaatggatg atttttttcc tgcagtagaa gcagcaaaag
    11761 aagcgggtat tactcatttt gaatttggtg gtggtgctag atttcaaagc ttgtattttt
    11821 atcttaatga agatgctttt accatgatgg atagatttag ggctattgta ggaaaagatg
    11881 ctaatcttca aactttagca agaggggtta atactgttac tttagatact ggaagtagtg
    11941 agcttattga tttgcatgca aaactttttg caaaacacgg taccacaacg ataagaaatt
    12001 ttgatgctct taatgatata aataatttaa aatttagtgg tgaatgtata gcaaaacatg
    12061 gattaaaaca tgaaatcgct attaccttaa tggatctacc gccaaattgc aaaggtgctc
    12121 atgatgtgcc tttttatgaa aaaattttaa aagaaatttt agcagcagaa attccttttc
    12181 acagcatttg ttttaaagat gcaagtggaa cttcaaatcc aaataaaatt tatgaaacca
    12241 ttaaaatggc aagaaaaatt ttacctcaag atatgcatat tagacttcat acgcatgaaa
    12301 ctgcaggggt gagtatagcc tgctatcttg cagcacttga agcaggtgtt gatggtatcg
    12361 atttggctgc agctcctgta agtggtggaa cttctcagcc tgatatttta accatgatgc
    12421 atgccttaaa aggtaaagat tatgatttag gtggacttga agaagaaaaa attctaaaat
    12481 acgaagaagt tttaaaagat tgtttaaaag agtatttttt accccctgaa gctactatgg
    12541 taaatccact tattcctttt tctcctatgc caggaggagc tttaacggca aatacacaaa
    12601 tgatgaggga taataatatt ttagataaat ttccacaggt cattcatgct atgagagaag
    12661 ttgtagaaaa aggtggattt ggtacttcgg ttactccagt ttctcaattt tattttcaac
    12721 aagcatttaa taatgttatg tttgggtctt ggaaaaaaat cgcagaaggt tatggaaaaa
    12781 tggtgcttgg ttattttgga aaaactccag ttgcacccga tgcaaacatt attgagcttg
    12841 cttcaaaaca acttaattta gaacctacta cagagcttgc tataaatata gctgataaag
    12901 atgagagtaa aagtatagct tataccaaaa ccttgcttga aaaagagggt atagaaacga
    12961 gtgaagaaaa tatatttgtt gcagcagctt gcaaagaaaa aggtatagca tttttaaaag
    13021 gagaggcaaa ggtaaatata cgcaaattag ccagtatgcc aaaacctatg agtgcagatg
    13081 aaaacaaatt taccgtagct gtaaatggta ataaatatca tgtagaagta agctatggct
    13141 ttgataaaga tgttaatgtt aaaagtgtga aaaaagtaga agaaaataaa aatattattt
    13201 cttcaaattc aacaagttct gtagatgctg aaaatgaagt tttagcaggt atttcaggta
    13261 atgtctttaa aatttatgtt aacgaaggcg aagaagtaaa atcaggtcaa gctatcatgg
    13321 ttttagaagc aatgaagatg gagattgagg ttaatgcccc aaaagatgga attatttcag
    13381 agctttgtat taaaataggt gatactgtta atgaaggcga agtattagct atttacaaga
    13441 attaaagtga gggaaaaatg aaaaaatttg ataagttagg tttggataat ataaaggaaa
    13501 tttttcataa tttaagttat gatgaattaa atgctcatga aaaagcaaat aatgaaggtt
    13561 taagcacgga taatgatact ttttgtgtag atacagggat ttttacaggt agaagtccta
    13621 aagataaata ttttgtaaaa caagatccat ctagtaaata tatagcttgg ggaaaggtaa
    13681 atcagcctat tacaaaagaa ttatttgata aacttttaac taaagcaaag caagaattaa
    13741 gcggaaagaa aatttatgtt caagatgttt tttgcggtgc ttctttgcaa agtcgcaaag
    13801 cagtaagatt tgttactgaa attgcatggc aagcgcattt tgttaaaaat atgtttattc
    13861 gcccaagtca agaggaactt gagaatttta aagcagattt tattgtttat aatgcttgca
    13921 aatgcatcaa tgaagattac aaacaagatg gtttaaattc agaggttttt gtgatcttta
    13981 atgttgaaga aaatatagcg gttattggtg gaacttggta tggtggagaa atgaaaaaag
    14041 gtattttttc tatgatgaat tattggttac cactagaaaa taaactttct atgcattgta
    14101 gtgcaaatgt cggagaaaaa gacgatgtgg cacttttctt tggacttagc ggtacaggaa
    14161 aaactacgct ttcaaccgat ccaaaaagaa gactcatagg tgatgatgag catggctggg
    14221 atgatgaagg tgtgtttaat tttgagggcg gttgctatgc aaaaacaatc aatcttgatc
    14281 ctgaacatga gcctgaaatt tatggagcta ttaaaagaaa tgcactttta gaaaatgtag
    14341 ttttaagagc tgataagagt gttgattatg ctgatgcctc aaaaacagaa aacacgagag
    14401 tttcttatcc tatagagcat attgaaaatc atgagcctag tctaaaagca gggcatccaa
    14461 aaaatattat atttttaagt gcagatgctt ttggaatttt acccccggta agcaaactaa
    14521 gcaaagagca ggctatgtat tattttttaa gtggctatac agcaaaagta gctggaactg
    14581 agcgcggtat aacagagcct caagcaactt tttcagcttg ttttggagaa ccttttatgc
    14641 ctttacatcc aacggtttat gcgagattgc ttggtgaaaa gattgaaaaa catgaagtta
    14701 atgtttatct tgttaatacg ggttggagtg gcggaagcta cggtgtgggt aaaagaatga
    14761 gcattaaggc tactagggct tgcattaatg ccattctaga tggaagtatt acaaaatgcg
    14821 aatttgaaaa ttttgaagtg tttgatttag ctattccaaa agctttagaa ggtgtagaaa
    14881 gtgtactttt aaatcctata aatacttggt tagataaaaa tgcttatatt gcaacaagag
    14941 ataaattagc acatatgttt atacaaaatt ttaaacgtta tgaagatgtc aaagaaggca
    15001 ttgaatttag caaatttgga ccaaaaattt aaggcattta aatgaaaaat gaaatgtggt
    15061 caggacgttt tagtggtgca agtgatgagc ttttaaaaga atttaatgca agtttaaatg
    15121 tagataaaac tttgttcaat gaagatatac aaggttctat agcacacgct acaatgcttg
    15181 aaagttgtgg tattttaaaa aaagaagaat tagatgctat tataaaaggt ttagagcagg
    15241 ttagaagtga aatagagcaa ggtaaattta tttttgatat taaagatgaa gatattcata
    15301 tggctgtaga aaagcgttta agcgagatta taggtagtga aattggcgga agactacata
    15361 ctgcaagaag tagaaatgac caagtggcta ctgattttaa actttttgta aaaaaatctc
    15421 atattgaact cataaagctt ttaaaagaat tgattcaaac catgctcgaa catgctaaag
    15481 tgcataaaaa aactattatg ccaagtttta cacatttaca gcacgctcag cctgtgagtt
    15541 tttcttttta tattttagct tatgctttta tgttaatgcg agatattaag cgtttgcaaa
    15601 atagcctaga acttgcagac ttttcaccac ttggatcttg tgcatgtgca ggaacaagct
    15661 atgctaccaa tcgtgagttg agtgctaaaa ttttaggatt taaagatatt atgccaaatg
    15721 ctatggatgg agtgagtgat agggattttg ctcttgattt gctttatgat atagcagtta
    15781 tttttacaca cacttcaaga ctttgtgagg aaatgatttt attttcaagc tcagaatttt
    15841 cttttataac cataagtgat agtttttcaa cgggaagttc tattatgcct cagaaaaaaa
    15901 atcctgatgt ttgtgagctt atacgtggaa aaacagggcg tgtttatgga aatttgattt
    15961 ctcttttaac tataatgaaa gctttacctt tagcctataa taaagatatg caagaagata
    16021 aagaagggat ttttgatagt gtaaaaaccg ctaaagatag cttaatcatc ttaaatgcaa
    16081 tgctaaaaga aatacaaatt aataaagaaa atatgcttaa tgcttgtaaa aaaggtcatt
    16141 tattggctac cgatttggca gattatttgg tgcgtgaaaa aaatattcct tttagaaaag
    16201 cacattttat agtgggaaat gttgttgcac aagctgaagc acaaggtatt gatataagtg
    16261 aaattaaaga tctttcaaaa atagatcctg tatttgatga aaaagctatg gaacttttaa
    16321 attttgaatt ttctttaaat tctaagcaaa gtgaaggctc aagttctatt gcaagcgtag
    16381 aaaagcaaat tcaaattttg gaaggtttta ttcaaaattt ataaatattg tttaggctat
    16441 tttgcctaaa cattgaatct aaaatgcatt acatcgccat ctaaaacgat atagtctttt
    16501 ccttcaaggc gtagctttcc tgcttctttg gcgccatttt cgcctttgta ttggatataa
    16561 tcttcatagg aaataacttc agcttttata aagccttttt caaagtcatt gtgaattaca
    16621 cttgctgctt ttggtgcttt ccagcctttt ttgattgtcc aagaacgcac ttcaactaca
    16681 ccagcggtaa aataactgat cagtccaagc ttagcaaaag cagtgcgtat gatttgatca
    16741 agaccgcttt cgttaactcc tagagaactt aaaaattcat gactttcttc atcgcttaat
    16801 cctactaatt cttcttcgat ttttgcacaa agcttgataa cttcatgatc atttttttta
    16861 gcatattctt ttaaagcttt tacataatca ttatcttcac taataccatt ttcatcaaca
    16921 tttgcaccat aaatcacttc tttagcagaa agcagtctta attctttgat taaggcttga
    16981 taaatttcac tttctttttc agggtaagaa cttgcagcta agcctttgtt taaatgatca
    17041 agtaaggaat ttgcaagttc gagactttct ttagcaccct tttgattggc tttggcttct
    17101 ttggtgagtt tttctatttt tttactcagt tgttcaatat ctgctaaaat aagctctgta
    17161 ttgataattt ctacatcacg taaaggatca actccacctt caacatgggt aatattttct
    17221 tcatcaaaac aacgtactat atgcaaaata acctcagttt cacgtatatt tgaaagaaat
    17281 ttatttccca agccttcgcc tttacttgcg cctttaacaa gtccagcgat atctacaaat
    17341 tctattaaag aatgcataat tctttcaggt tttactattt tagcaagttc attaagtctt
    17401 aaatcaggaa cttcaaccat ggctttatta ggctctatgg tgcagaaagg atagtttgca
    17461 ctttgggcat tttgtgcttt agttaaagca ttaaaagttg ttgatttgcc aacatttgga
    17521 agtcctacta tacctacgct taaactcatt tagctttcct taaaatttga attaaataat
    17581 taacacacat tctaactcca gctccacctg cgccaaaact agaatatccc caagattttt
    17641 ctgtataagc aggtcctgct atgtcaagat gtagccattt atctttatat tctttacgaa
    17701 taaatttatc taaaaataac cctgcggtaa ttgcacctcc gtagcgacta gaggcagtat
    17761 tactaacatc ggcaatattt gattttataa gttctcttaa gtgagggttg aaatgtaaga
    17821 ttgtggtata ttctccgctt tttttagagc ttagataaaa atcattttgc aattcctcat
    17881 tatttcccat aatagcactt gtaaattctc caagtcctac aacacaagct ccagtaagag
    17941 ttgccatatc gataagtaaa tcaggtttta aatcctgtgc aaaagaaaga caatcagcta
    18001 aaaccaagcg tccttctgca tctgtatttc ttacctctat gcttacacct tcacgactga
    18061 ttaacacatc atcaggctta taagcattgc cgcctatcat attttcagtt gcgcccaaaa
    18121 tgcaatgcac ttctaaatct aaagcaagtt cagctacggc ttttatgatt cccattactg
    18181 ctgctgcacc gcttttatca gctttcattg taagcataaa atcagctggt tttaagctta
    18241 atccaccgct atcgtaagtt aagccttttc caacaaatac aacacgtttt tttgcatttt
    18301 tggctttata gcttagatga atgaggcgtg gtgggtgtat cgaggcgcga tttaccgcta
    18361 aaaaggcatt cattttttct ttggctaaga atttttcatc ataaatttta caaataatgt
    18421 ttttattttc tttagctaaa ttttgcgcat cttctgccat ttttaaaggg gtgtaaattt
    18481 caggaatttc attgactata tttttagtaa aatttgtagc attagctaaa atttctccac
    18541 gctctaaacc tatcttagct tcatctttat taaatttctt accatttaat tcttcgcttg
    18601 aaataataaa tttttccaaa gtacttgttt ttttctcgct tttatatttg tcaaatttat
    18661 aagctccaaa aagtacgcct tcaactaaag atgcaaaact tctaactaca caatctccta
    18721 ttatgctagg aagttttacg cttttaatat taagtttctc aagagtttta tatgctgtgc
    18781 aaagacttaa tcttatatcc tcataagcaa gacttttaag ctctaaataa agctttttat
    18841 tgtttaagtc taataataca ccttcgcctt tgtaattatt aagtttaaaa aaatcttttt
    18901 ctttgttaaa aatttttaaa tttttatcct gtataaaaac aagttcaaag tctgctttta
    18961 tagcatctag ttttttatcg tttaattcaa atttcatgat tttttccttt tatctttaag
    19021 tatagctttt tccatttgtt taaaaccaaa taataaaagg gataaaaaag ctataataat
    19081 aatggctgca taataccaat gttcttcagc ccaagtcacc atcttccaaa tttgttctcc
    19141 aaaataccaa gctaaaagta tagtgattga tgcccaaacc caagcactaa aaagattgat
    19201 aatagcaaat ttttttgcac tataacgcgt gattcctata ctcataggta taatggttct
    19261 aaaaccatac atatagcgtt gtataaaaat aataggccaa ccaaaacgtt gtaaaagtag
    19321 gtgtgctact gcaaatttac gcctttgagt ttttaatttt ttttgtatgt agcgtttatt
    19381 atatcttcct atatagaaat aaatttgatc acctacaaaa ccaccaagtc ctgctataaa
    19441 tataacaaaa cctaaattta catgtccttg atgagcaaaa atacctgcta aaattaaagc
    19501 taactctcct tctaaaatgc accataaaaa aataataata taagctagat ctttgtattg
    19561 gtaaagtaaa ttttttaaaa attcttccat ttgtaccttt ctatagtttt aaatttctaa
    19621 aacactataa actgaagtaa gtttttcaag tttatttgct ccatttaaat ctttaagatt
    19681 cattaaaaaa caagcttcaa cacatttagc tccagctttt tgaatgagtt catatgaagc
    19741 tatagctgtt ccgccagttg ctattaaatc atctacaagt aaaactcttg cattttgaat
    19801 atttttaaat gcatctttat gaagttctac tttatcgctg ccatattcaa gatcgtattc
    19861 gcagctaaag gtttcaaaag ggagttttcc aggttttcta ataggcacaa aaggaagatt
    19921 aagttttgca caaatcatag atgcaaagat aaatcctctg ctttctgttc ctgctatgaa
    19981 gtctagattg taatctttgt agcgttcttt taaatgtcta agtagaaaat ttaaagcttc
    20041 tttgttattt agtagagtgg tgatatctct aaaaataatt cctttttttg gaaaatcagg
    20101 aataatccta atgctatcaa gcagatattt tttttcttct tgtgttagtt ttatcataat
    20161 aatgcctcga tttttgcttc taattcttta attctttgtc ttagtttgtc attttccaag
    20221 cgatattgag aatttctggt tcttaaagat gtaaggtctg ctttgatttt attaagttct
    20281 tctgtgagta tatctatatt tccaagactt ctttgaagtt gaatttgtag ttttctaatg
    20341 acaatctcag tatcatcaag attgtttttg ataaaatctt ttgatgtttt ttctttatta
    20401 agtagagttt tatagtaaaa caacattaca ataagataga tagttgcaca aatcaatata
    20461 gttaaaacaa gccagtttgt aaacattata tttttacctc aattttttga attctttgca
    20521 tatgtctccc ttcttcaaaa ggagtttgaa tgaatttttc tataatatct atagctaatt
    20581 caaccccaat taatcttccg cctaatgcca aaacattggc atcattatgc cttcttgcaa
    20641 gttctgcact taagctttcg tggcataatg cacaacgaat gtttttatga cgatttgctg
    20701 caatagaaat tccaattcca cttccacaaa taagaatgcc aaagctccgt ttgtttattt
    20761 tttcggcaag taaatgcgca taatcaggat aatcgcagct tgcgcaagtg tttgttccta
    20821 aatcgttaaa aattatattt ttttctttta aaaatacgca aattttttct tttaattcaa
    20881 aaccagcatg atcactagca atataaattt tttccctaag cattggtttc ctaattacta
    20941 tataaaataa gataaaaacc taatcttatc atattaaatc ataaaaacag cttttctttg
    21001 ttttaaaaat aagctttatt tttctttata tatgttagaa tcatgtgaca agaaaaataa
    21061 aatttcaata aattaagagg agaagaaagt gaagctcata ctcataggat cttcaacagg
    21121 tggtcctaat cagcttaaat ttcttttaaa ggatattgat gtaaaaaata cttgtgtagt
    21181 tatagctcag cacatgagtg ccagttttat tccatctttt gtggggcaat ttaataaaga
    21241 agcttttagt gaagtgtgct tattgaacga taaagagata ttaagcaata aaatttatat
    21301 ttgccctaaa aatactattt tatctggaaa tttaaatatt gtagccgctt ggcaagatgt
    21361 ggcttcaagc tttaaaccga gtgtggattt actttttcat tccgctgttt ctttggcaaa
    21421 aacaaataaa atacttgcta ttattttaac gggcatggga gatgatggcg caaaaggttt
    21481 atttgagctt tataaaacag gagttagatg tttatgtgag aatgaagcag atagcgtcgt
    21541 ttatggtatg ccaaaaagag caaaagatat gaatccgcat ttaaaaccta tgagcttaaa
    21601 agaaattaaa aaagaaattg taaattttat tgatcaggat taataaaagg aaaattgcat
    21661 ggaaaaaaaa ataactccta gcgaattgga acttaatgaa tttata
//
LOCUS       DAPOLW010000008        21478 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.008, whole genome shotgun sequence.
ACCESSION   DAPOLW010000008 DAPOLW010000000
VERSION     DAPOLW010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21478
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.008"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..635)
                     /locus_tag="ROE18_000223"
     CDS             complement(<1..635)
                     /locus_tag="ROE18_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HDX3650446.1"
                     /translation="MLNLDKFLEIAINASNQASKAILEERKNFKTWEKEDKSPLTSAD
                     LASNKILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCVM
                     ISLVHDNRPVLSLIQNPSKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNH
                     LSKEDEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGD"
     gene            complement(715..1983)
                     /locus_tag="ROE18_000224"
     CDS             complement(715..1983)
                     /locus_tag="ROE18_000224"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HDX3650447.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIVATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELRPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHVHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            complement(2098..3273)
                     /locus_tag="ROE18_000225"
     CDS             complement(2098..3273)
                     /locus_tag="ROE18_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDX3650448.1"
                     /translation="MHQSVIDTQALIDLKILIVIALCLLFSPHIAKILRLPLSATEII
                     LGAIIAHFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMDKEIAKKSFFYIFL
                     LYALSSFIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDEKLYSALILTALFEAIIVMSMIKFLSNSKK"
     gene            complement(3254..4090)
                     /locus_tag="ROE18_000226"
     CDS             complement(3254..4090)
                     /locus_tag="ROE18_000226"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HDX3650449.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLEYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLESSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLSADEALKIVRDTKEALPQ
                     SVVMVAGGREVVLRERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            complement(4092..6194)
                     /gene="topA"
                     /locus_tag="ROE18_000227"
     CDS             complement(4092..6194)
                     /gene="topA"
                     /locus_tag="ROE18_000227"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HDX3650450.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKSAIENALKNPRKLNMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEVYSISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQANFGKDYLPSKANVY
                     TTKTKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPAISQTQ
                     NVFVKNDRAVFKISGRKILFDGYYKVYGDMDKDKILPNFKIGQNLKVQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVTIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKGESKNESENTAAKPKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGTFLECLKCKIKKEMKD"
     gene            6389..7660
                     /locus_tag="ROE18_000228"
     CDS             6389..7660
                     /locus_tag="ROE18_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDX3650451.1"
                     /translation="MNDKTYKFHPNDTKMDKKIIQITEKSGFKAAVFSMAAMTMLGSV
                     VISSALPAINRHFEELLTQSGATLASSFTLAHLDILVRLVLTIPAIFVVILSPFAGIL
                     MDKFGKLKFILPAMVVWTLSGISGFFLNDIYAILTSRAIFGMATAFIMTGASALLGDY
                     YSRGGFNRRENALSLQGFFCAVGGAVFISIAGFVSSYSWRYPFLVYGLGILITLMAII
                     YLFEPRKFKFYNHTKIETKTNYWQFFPIYFIGFFIMVVYYISPTQLPYYIEEHLGLDP
                     KYIGISMSVSALCYGFFSLSYRYIIKFLSIKTIYVLTLFIVSCSFLLLFLVDSFFTVL
                     IALALLGMGGGIMLVNNTAYLFSICPENARSRAYGILASCIFLGQFLSPIISQPIVRQ
                     MGLVDAFLIWSIVIFIVCIVFLFLKQKPRIN"
     gene            complement(7688..8953)
                     /gene="secY"
                     /locus_tag="ROE18_000229"
     CDS             complement(7688..8953)
                     /gene="secY"
                     /locus_tag="ROE18_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HDX3650452.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYIELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNGYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSSYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
     gene            complement(8953..9345)
                     /locus_tag="ROE18_000230"
     CDS             complement(8953..9345)
                     /locus_tag="ROE18_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HDX3650453.1"
                     /translation="MNLTKAAGSTHKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFESIKSVHKISKSV
                     NKIKLIGASAKDLVSKIKDENISVTGSK"
     gene            complement(9350..9793)
                     /gene="rpsE"
                     /locus_tag="ROE18_000231"
     CDS             complement(9350..9793)
                     /gene="rpsE"
                     /locus_tag="ROE18_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HDX3650454.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            complement(9805..10161)
                     /locus_tag="ROE18_000232"
     CDS             complement(9805..10161)
                     /locus_tag="ROE18_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HDX3650455.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKAKKIEQAVFDRNGYVYHG
                     VIAALAESLRENGIRL"
     gene            complement(10171..10707)
                     /gene="rplF"
                     /locus_tag="ROE18_000233"
     CDS             complement(10171..10707)
                     /gene="rplF"
                     /locus_tag="ROE18_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HDX3650456.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            complement(10786..11181)
                     /gene="rpsH"
                     /locus_tag="ROE18_000234"
     CDS             complement(10786..11181)
                     /gene="rpsH"
                     /locus_tag="ROE18_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HDX3650457.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGT
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            complement(11191..11376)
                     /locus_tag="ROE18_000235"
     CDS             complement(11191..11376)
                     /locus_tag="ROE18_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HDX3650458.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            complement(11378..11923)
                     /gene="rplE"
                     /locus_tag="ROE18_000236"
     CDS             complement(11378..11923)
                     /gene="rplE"
                     /locus_tag="ROE18_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HDX3650459.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            complement(11927..12160)
                     /locus_tag="ROE18_000237"
     CDS             complement(11927..12160)
                     /locus_tag="ROE18_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HDX3650460.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            complement(12160..12528)
                     /gene="rplN"
                     /locus_tag="ROE18_000238"
     CDS             complement(12160..12528)
                     /gene="rplN"
                     /locus_tag="ROE18_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015106543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HDX3650461.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            complement(12528..12779)
                     /gene="rpsQ"
                     /locus_tag="ROE18_000239"
     CDS             complement(12528..12779)
                     /gene="rpsQ"
                     /locus_tag="ROE18_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HDX3650462.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            complement(12789..12974)
                     /gene="rpmC"
                     /locus_tag="ROE18_000240"
     CDS             complement(12789..12974)
                     /gene="rpmC"
                     /locus_tag="ROE18_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HDX3650463.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            complement(12961..13386)
                     /gene="rplP"
                     /locus_tag="ROE18_000241"
     CDS             complement(12961..13386)
                     /gene="rplP"
                     /locus_tag="ROE18_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HDX3650464.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            complement(13389..14090)
                     /gene="rpsC"
                     /locus_tag="ROE18_000242"
     CDS             complement(13389..14090)
                     /gene="rpsC"
                     /locus_tag="ROE18_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HDX3650465.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            complement(14090..14515)
                     /gene="rplV"
                     /locus_tag="ROE18_000243"
     CDS             complement(14090..14515)
                     /gene="rplV"
                     /locus_tag="ROE18_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HDX3650466.1"
                     /translation="MSKALIKFIRLSPTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVIVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     AKAEVKSEEKKTVAKKTTTTKAPAKKTTSTKKATVKKES"
     gene            complement(14526..14807)
                     /gene="rpsS"
                     /locus_tag="ROE18_000244"
     CDS             complement(14526..14807)
                     /gene="rpsS"
                     /locus_tag="ROE18_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HDX3650467.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            complement(14809..15639)
                     /gene="rplB"
                     /locus_tag="ROE18_000245"
     CDS             complement(14809..15639)
                     /gene="rplB"
                     /locus_tag="ROE18_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HDX3650468.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVAAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            complement(15641..15922)
                     /locus_tag="ROE18_000246"
     CDS             complement(15641..15922)
                     /locus_tag="ROE18_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HDX3650469.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKVVLKE
                     YFGVTPKSINSLRMDGKIKRFRGRLGQRNNYKKFYVKLPEGVSLENTEA"
     gene            complement(15925..16539)
                     /gene="rplD"
                     /locus_tag="ROE18_000247"
     CDS             complement(15925..16539)
                     /gene="rplD"
                     /locus_tag="ROE18_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HDX3650470.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESITKEG"
     gene            complement(16536..17111)
                     /locus_tag="ROE18_000248"
     CDS             complement(16536..17111)
                     /locus_tag="ROE18_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HDX3650471.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTVKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            complement(17121..17432)
                     /gene="rpsJ"
                     /locus_tag="ROE18_000249"
     CDS             complement(17121..17432)
                     /gene="rpsJ"
                     /locus_tag="ROE18_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HDX3650472.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            complement(17630..18391)
                     /locus_tag="ROE18_000250"
     CDS             complement(17630..18391)
                     /locus_tag="ROE18_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HDX3650473.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVKFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYEKLRDFLKFNEIRY"
     gene            complement(18427..20421)
                     /locus_tag="ROE18_000251"
     CDS             complement(18427..20421)
                     /locus_tag="ROE18_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HDX3650474.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKENSENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRISHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFARTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKATKTLINKPRVFSYGLVADKHDHAFSKDMTEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            complement(20390..21190)
                     /gene="rsmA"
                     /locus_tag="ROE18_000252"
     CDS             complement(20390..21190)
                     /gene="rsmA"
                     /locus_tag="ROE18_000252"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HDX3650475.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMAQREMAEKFCAKEGNSEFSSLGVLSAMICER
                     KILFDVDPQCFNPPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDLYLKIYDKLKDEYGRKQRDK"
     gene            21272..>21478
                     /locus_tag="ROE18_000253"
     CDS             21272..>21478
                     /locus_tag="ROE18_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDX3650476.1"
                     /translation="MIICAGGNENFSFAKAIGIGLVESAFHLSQLCFKEKPSKLIFIG
                     TCGLYDKGEILEIYRSSHAFNVEFS"
BASE COUNT         6379 a         4126 c         3058 g         7915 t
ORIGIN      
        1 aaatctcctg ctacaatatc ccaaatatta agcttttcaa atcttttata aactcctgcc
       61 ctagcctcta aaatagcaca aaatttcaat ccagagccta tattaatagc ttctaattga
      121 tgctcttttg caaagtcttc atcttctttg ctaagatgat taacactcaa taaggcttta
      181 tatttatttt tctcgtattc ttgctggtca atttgcaaag gtttatcgtt tttataaacc
      241 ttggtttttg catgagcata gaatatatca ccttttgatg gattttgtat gagcgataaa
      301 acagggcgat tgtcatgaac caaacttatc ataacgcaaa attcatcact gccttttaaa
      361 aaaccacttg ttccatcaag aggatcgata agccaaaaag tttttaattc ttcacactct
      421 tctttgctga gtaatttttc ttctgataga attttaatat ccgtagaacc caaaatatca
      481 tttagaattt tattagaagc aagatctgct gatgtaagcg ggcttttatc ttctttttcc
      541 caagttttga aattttttct ctcttctaaa atagctttag aagcttgatt gctagcattt
      601 atagcaattt ctaaaaattt atcaagatta agcatgatta taaactttct ataagatttt
      661 ttaaaattat acaagaagat tttgtggaat ttttaatttc cacaaaaatt ttaattaaat
      721 tttactagtt tcacccaaat aaagttgtct tggacggact attttaagac tttcttgctc
      781 tttttgttct atccactgag ctatccatcc tggggtgcgc cctataacaa ataaagtagc
      841 aaacatttca tttggaatac ctaaggcttt taaaataagt ccactatgaa aatcaacatt
      901 cggatataac cctctttgaa caaaataatc atcgcttaaa gcaatctctt ctatacgcgt
      961 tgctacttta ataagattgg tatcaatacc caactcatca ataagttgat cacgaagctt
     1021 tttcagtact tttgctctag gatcaaaatt tttataaacc ctatgcccaa agcccatcaa
     1081 gcggaaagga tcgtttttat ccttagctct tttgatgaat tcatctaccc tatcaacact
     1141 acctatttgc tcaagcattc taataacacc ttcattagct ccaccatgtg catgacccca
     1201 aagcgcacca atacctgctg ctatacaggc ataaggatga acatgagttg aacccacagc
     1261 acgaactgtt gaagttgaag cattttgctc atgatctgca tgaagcataa aaactgtatc
     1321 aagtgctttt acttctatag gtctaagctc tacatgatcg taaggatagg ttcttaacat
     1381 atataagaaa ttttctgtaa aaccacgatc taaatttgga taagccatag gaaagccgtg
     1441 tttatatcta taagcggtgg ccactatagt agggatttta gctactattc tagctgccat
     1501 ttccatatat tcttctttta cattcatgtt taaatgatca ggataaaaag cactaagcga
     1561 tgaaacagca ccttgtaaaa ctgccatagg atgagcatta tcagggaaag aatcaaaaag
     1621 acggtgcata ccttcatgga taaaagaacg ctttttcatt tcataacgaa atgcttcaag
     1681 acgcgtagca tcaggtaatt ctttataaag taaaagatga accacatcta aataaagttt
     1741 gttttcagca agccactcta taggatagcc acggtgcatt aaaattccat tttctccatc
     1801 aatataagtg atttttgatt tacaagtagc tgtagaagtc aagccctcat cataagaaaa
     1861 cattcctgtt tgtttataaa aacttgacat atctacaacg cttggcccag ttgtaccatc
     1921 atatatagga aattcatagc tttttccatt tctattatcg gttatagtaa cggaatttga
     1981 cattttcgct ccttttattg ttacttttat taattctaac aaaaaagggc gattatgagt
     2041 ttttttatta ttaaattttt aagattttgt ttgctttttt gagtaaaaaa gtaactttca
     2101 ttttttggaa ttagaaagaa atttaatcat actcataaca ataatagcct caaataacgc
     2161 tgttaaaata agcgctgaat aaagcttctc atcaataacc ttgcccgaat aacccaaagt
     2221 agctgttgct ataagcaagg ttaaaggcat agaatgacta agaccaaata aaatcatatt
     2281 tttaaaacca attcttttta aaaaaacact tgcacataaa attcttaaac ccaccataac
     2341 aaacataagt aaaaatgctt gtaaaacgat tttataatct aaaatcattt taagatcaaa
     2401 ggttgaacct atatggataa aaaaaatagg gatcaaaaac ccgtgtccaa aagtagaaag
     2461 cttgtgctca agatcttttt tatgatcaaa aaaagtagct ataaatgaac ctgctataaa
     2521 agaaccaaga acgatttcaa gttttgtaat aaccatagca acaatgatca gtataaaaat
     2581 ggccatacaa aatcttatat ctttttcatt tttatcttcc catggcataa gcacaacttt
     2641 aagctgagga taccaccaaa aaagcacacc aagcatttta aatccaagca aacaaagccc
     2701 caaaaagata ttaagatata aaatactttg cgctacatca ataatacctg ttccttcgcg
     2761 caaaaaagct cccgctatag tcaaaagcac aatagaaatc acctcagcta aagtagccac
     2821 tatcatagca atatttagcc aataacactc ttttccaaaa tccttaaaaa gtaaagataa
     2881 aagccctaca ctcatcacag gtataatgat aacaaatact aaagaaagtc caaaaatcca
     2941 tactataaaa gaagataaag cgtaaagtaa aaaaatataa aaaaaacttt ttttagcaat
     3001 ttctttatcc atattaaaga aggctcttaa atttacctcc atacccgcta taaacattag
     3061 ataataaaaa cctacatttg ccaaaagtgc aaaattttca ctttttccta tgaaaccaaa
     3121 atgcgctatt attgccccta aaataatttc agtagctgaa agaggcaagc gtaaaatttt
     3181 tgcaatatgc ggagaaaaaa gtaagcataa agctataaca ataagaattt ttaaatcaat
     3241 taaagcctgt gtatcaatga cactctgatg caaaagtaaa tcccatttct tttaatttta
     3301 ttatatcttg acttggttct tcacctttag tggttaaata atcccctata acaatagccc
     3361 cagcacctgc ttgaaaaatt tcatattgtc tttctcgtaa taccacttca cgcccacctg
     3421 ctaccattac cacgctttgc ggtaaagcct ctttggtatc acgaacaatt tttaaggctt
     3481 catcagcgct aagtcttgga acttgtagtt ttaaattttc atttgctata aaaaaattaa
     3541 taggcgttga aaaaggttgt aattcttgca aagattttct aaaacttagc ctatcttctt
     3601 cactctcacc cataccatag attccaccac aacaaagcat aagccctgct tctttagcgt
     3661 ttaaattggt ttgaaatcta ctttcccaag tatgcgtggt gcaaatttgt ggaaaaaatt
     3721 ccttagaact ttcaagattg tgattataag aaaaaattcc tgctttttta agttctttga
     3781 gttgttccac gcttgccatg ccattacagg caattaaaag caagttaggc acttcttttt
     3841 gcacggcctt agcagcttcg caaacatact caagcttttc atcatcaagc ccaagtcctg
     3901 ctgtaaccaa acaaaaaccc aaggcttcat ttttctttgc catttttgct tctaaaacga
     3961 tttgtgaaag ttctttacga cgatattttt gaatatctgt ttttacatga gcgctttggg
     4021 tgcagtattt acagtcttct gaacaatttc cactcgctat atttgaaata gcacaaagca
     4081 tgatttgcat tctaatcctt catttctttt ttgattttac actttaaaca ttctaagaat
     4141 gtaccttttt taagctcttt tatcactaaa gtttcgccac actcttcgca tttttcttca
     4201 cttggtttgt atttgcttat aaaattgcat tttggataag cactacagcc ataaaattta
     4261 ccacgttttg aaaagcgttc tacgatttca cctttttgac aacttggaca agtaatgcct
     4321 gtaccattag ctttaggttt tgcggctgta ttttcgcttt cgtttttgct ttcacctttt
     4381 aaatttcttg aatacttgca ttttgggaaa tttaaacacg ctacaaattc tccaaaacgc
     4441 ccttttctaa tagcaagctc tccgccacaa tcaggacaac tttcgcctag ttttgtgaca
     4501 gttttttgac tagctatttt tgtttttcct tcttcgattt ttctcataaa aggatagtaa
     4561 aattctttta aagtttcttg ccaatctgcc ttatcttctg cgatttcatc tagggtattt
     4621 tcaaggtttg aagtaaattt actatctact atatcgctaa aatttttctc aagcacttcg
     4681 gttacattaa aagcaacatc gctaggaatg agttgttttt tatctattgt tacataatca
     4741 cggcttgtaa gtatagaaat ggttggtgca taagtagaag ggcgacctat gcctaaactt
     4801 tcaagttttt ttacaagtcc tgcttctgaa taccttgaag gtggttcggt aaaatgtgag
     4861 ttcatttcta aattttgcac ttttaaattt tggcctattt taaaatttgg caaaatttta
     4921 tccttatcca tatcaccata aactttataa tatccatcaa aaaggatttt tctaccgctt
     4981 attttaaaaa ctgctctatc attttttaca aatacatttt gagtttgaga gatagcagga
     5041 ctcatctgac aggctaaaaa gcgattgtaa ataagtgtgt aaagttttaa ctcatctttg
     5101 tctaaaaatt tagccgcaat ttctggagta aaacttaaat ttgtagggcg tatagcttca
     5161 tgagcttctt gagcgccttt agtctttgta gtatatacat ttgctttgct tggaagatag
     5221 tccttgccaa aatttgcttg tatgaatttt cttgcatttt ctactgcttc tttggctaaa
     5281 tttaaactat cggttctcat ataagtaata acccccatca cgccttcatg ggtatttact
     5341 ccttcataga gcttttgagc tatcatcatg gtttttttag ggttaaaacc aaggcgattg
     5401 ctggcacttt gttgtaaagt tgaagtcata aaaggaggcg gcggagcgat ttttctttct
     5461 ttgctttcaa tgtcacttat actataaact tcatttttac aagcttctag tataagttta
     5521 gcacgatctt tgttggtaat ggtaagtttt tctatcttgg ctttatcaaa ctcaactagt
     5581 tctgcatcta aatctttttg aaaaatcata tcaatactaa agtattctag gggtacaaag
     5641 gcacgaattt ctttttcacg atcgactatg atctttaaag ccgcactttg aacacgccca
     5701 gcactaagtc ctctttgaat tttttgtcct aataaagggc tgagcttata ccctacaatg
     5761 cgatctaaaa gacgtctggt ttgctgagca tttacagagt gcatgtttaa ttttcttgga
     5821 ttttttaaag cattttctat agcgctttta gtgatttcat gaaaaacaat gcgtggtaag
     5881 gtgttttcat cttttcctat agcttttgca atatgatagg ctatagcctc tccttctcta
     5941 tcttcatccg ttgcaagata gacttctttg gcatctttgg ctttgctttt aagttcttta
     6001 actaaggcgc tatgatcact tgtgattcta tactcaggga taaattcatc atcttctatt
     6061 ttaatcccaa agcttgattt aggcaaatct ctaatatgtc ctttagaagc gataacttca
     6121 taatcttttc ccaaaaaatt tcctatggtt ttagcttttg caggagattc tactatgatt
     6181 aaatttttct tcattttgca cccttgttaa ataaaaagct gaatttagct aaaaatattt
     6241 aaaattctac ttataaaata tattttaatc aagctaaaat attttaaaaa caaaactatc
     6301 ataacaaaat aaataaaata taattttaag taattttaaa tacaaaccat aatttttgga
     6361 gtataataaa ataaaaaagg taaaaattat gaatgacaaa acttataaat ttcatccaaa
     6421 tgacacaaaa atggataaaa aaataattca aattactgaa aagtccggat ttaaagcagc
     6481 tgtgttttct atggctgcta tgactatgct aggaagtgtg gtcatttcat ctgctctgcc
     6541 tgctatcaac agacattttg aagaactttt aacccaaagt ggcgctactc ttgcttcaag
     6601 tttcacatta gctcatcttg atatacttgt tcgcttagtt ttaaccatcc ctgctatttt
     6661 tgttgtcatt ttatctccat ttgctggtat tttaatggat aaatttggca aattaaaatt
     6721 cattcttcca gctatggtgg tttggactct ttctgggata agtggctttt tcttaaatga
     6781 tatttatgct atactgactt caagagctat ttttggtatg gcaactgctt ttataatgac
     6841 aggcgcttcg gctttgcttg gggattatta tagtcgtggt ggctttaatc gcagagaaaa
     6901 tgctttaagt cttcaaggat ttttttgtgc agtagggggt gctgttttta tttctattgc
     6961 gggatttgtt tcaagttatt cttggcgtta tccttttttg gtatatggac ttggaatttt
     7021 aattacctta atggctatca tttatctttt tgaacctaga aaatttaaat tctataatca
     7081 tacaaaaata gaaacaaaaa caaattattg gcaatttttc cctatctatt ttataggttt
     7141 ttttatcatg gtagtttatt atatttcgcc aactcaactt ccttactata tagaagaaca
     7201 tttgggattg gatcctaaat atataggtat ttcgatgtct gtatctgcac tatgttatgg
     7261 ttttttctct ctaagctata gatatattat aaaattctta agtattaaaa ctatttatgt
     7321 tttaactctt tttatcgtat cttgttcttt tttgctgctt tttttagtag atagcttttt
     7381 cacagtttta atcgccttag ctttgcttgg aatgggtgga ggtattatgc ttgtaaataa
     7441 tacggcttat cttttttcaa tctgtcctga aaatgctcgc tctagggctt atggaatttt
     7501 agcaagttgt atatttttag gacaattttt aagtcctatt atctctcaac ctatcgttag
     7561 acaaatgggt cttgtagatg cttttttaat atggtcaata gtaattttta tagtgtgcat
     7621 tgtgttttta tttttaaagc aaaaacctag aataaattag caagaaaaat cttgctaatt
     7681 ttatttatta caaacctacc gcacttaaag tttggtattt actcatataa atttgagctt
     7741 caatttttct catcgtatca agtgctactt gaactacaat aagtacagaa gtgccgccaa
     7801 aatgaaaagg cacacccata aatttcacca aaacccaagg taaggttgca acaagcccta
     7861 aataaataga acctgataaa gttaaacgag aagccacttc gttaagataa cttgaagttc
     7921 cttcacctgg acgaattcca gggataaaac cgccttgttt tttcaaattt tctgctatgt
     7981 ctttagcgtt aaatacgata gaagcataaa aataagcaaa gaaaattaca aacaagaaag
     8041 ttagaacatg aaacaaataa ccatttggat ttaaaaagtc attaatggct tgtagataag
     8101 gatttgtact agtttgtaaa attgttgttg gaaacatcaa aatcgcacta gcaaaaatcg
     8161 gtggaataac cccactaaga ttgagtttaa taggaatata attcataatg cgtttgtttt
     8221 gattttgcat tacaacttta cgagaataag aaataggaat tcttctttct ccaagttcta
     8281 tataaataat cacccctatg gtgattaaaa tcaaagcaaa aattgcaaaa gcggttaaga
     8341 aattcatctc gcctgaattg atttgtccta cagttcctga aatcgctctt ggaatacctg
     8401 aaacaatacc tgcaaaaatg attaaagaaa taccatttcc tatacctctt tgtgtgattt
     8461 gttcgccaag ccacattaaa agcatagttc cagcaagcat agaaatagca caaagtgcga
     8521 taaacatatt taaatcttcc accattatag cccctgcacc accacgaccg tgcaagcttt
     8581 gcaaacctat agcaacgcct atactttgaa ccaaagtaat cacaatagtc gcataacgga
     8641 taatttgcat atatttttgc atactatcac gctctttttt catcttacca atatttggaa
     8701 aagttgctgc aagaagctcc ataataatag aagcagtaat ataaggcata atacctaaag
     8761 aaatgataga aaagcgttca gccgctccac cactaaaaac attaaataaa cccaaagcat
     8821 tgttttgatt gttattaaaa aattccgcaa tcacatcagc attgacgcca ggaactggca
     8881 cataagccag aaccctataa gcaaataaaa atgctaaggt gattaaaatc ttattcgtca
     8941 atgctctatt cattattttg atccggtgac gctaatattc tcgtctttga tttttgatac
     9001 taagtctttt gcacttgcac caattaattt gattttattc acagattttg aaattttgtg
     9061 aacactttta atgctctcaa atgtaatttc actaagctct tttacagctg tgattttttc
     9121 aacattgatc acataaggtt tttgaatttt agaagtaaaa cctacttttg gtagtcttct
     9181 ttgaagtggt tgttgacccc cttcaaaacc tcttttttca ttataacctt ttctagcagt
     9241 ttgaccttta ccccctttag tagcagtctt acccatgcca gaaccttgac cacggccaat
     9301 tcttttagtt ttatgcgttg aacccgctgc ttttgttaaa ttcatcttct tatcctttta
     9361 acattgttaa agctttgatt gtagcacgaa ccacattagc tgaattattt gaacccaaag
     9421 acttggttaa gatgtcttta atacctgcaa gttccacgat agggcgtgta gaaccacctg
     9481 cgataactcc tgtaccttcg ctagctggtt taagtaaaat tctacttgcg ttgtatttca
     9541 cctctacatc gtgagcgata gttgagcctt tagttttaac ttcaacgata tttttaaacg
     9601 catcgtcaac agctttacgg atggcatctg gaacttcctt agccttacca taaccaacac
     9661 ctactaaacc tttgcggttt ccaacgataa ctaaagcagt aaatctaaat cttctaccac
     9721 ctttaacaac cttagtaact ctgccgatat cgacgattac ttcttcaaat tcttctctat
     9781 tatatttttc catcgattta ccccttatag cctaatgcca ttttctctta aagattcagc
     9841 caatgctgcg ataacaccat gatatacata accatttcta tcaaaaacag cttgttctat
     9901 ctttttagct tttaaagttt tagcaaattc agcagcgatt tttttagcac cttctttatt
     9961 tgctttaacg ccaagtttgc gtccatcaac tgctgctaaa gttacagctt ttacatcatc
    10021 aatcgcttgg atatatagag ttctgtttga tttaaataca gaaattcttg gaaaattttc
    10081 acaacctgaa attttcgctc taattctttt ttttcttttg attcttaaag ttagttttct
    10141 ttttaataca tttgctctca tattctaccc ttacttctta gatgtcttac cagctttgcg
    10201 gataatgcgt tcatcagaat acttaacgcc ttttccttta tatggctctg gcggtctaaa
    10261 ttcacgaatt tgagcagcaa cttgacctac aacttgttta tcacttcctt taactgcaat
    10321 agtattttta tccactacaa tttcaattcc ttctggaata tcataattaa taggatgaga
    10381 aaaaccaagg cttagttcta aaactttacc ttttaaagct gccttataac caactccatt
    10441 gatttcaaga gtttttgaaa aaccttgagt taaacctaca acgatattgt aagctaaagc
    10501 tctgtaagtt ccccaataag ctctactttg tctgtcttca ccttttggag aaaaaagaat
    10561 attattatct ttaatctcaa catttacatt tgctttagta tcaagttctt ttgccaaatt
    10621 tcctttttta aatttaagca aatttccttc taattttact tctactcctg ctggaatagc
    10681 aatcggttgt ttacctatac gagacatatt tttccttttt atttgtctag gatatttcta
    10741 cttttttaaa agaatggata cccaatgcca taaaaagcag attttttacc aaatggtaca
    10801 taaaatttcg ccgccaacac ctgctttata agcttcatca ttagctaaaa caccatgact
    10861 tgtgctaact acgatagtac cataaccatt tttaaaacgc ttgatttcat ctttaccttt
    10921 ataaacacga cgaccaggct tagaaattct tttaagctca ttgataacac tcttaccttt
    10981 ttcatcgtat tttaaaacta cattgataaa tttcttttta tcttcttcaa taacattaaa
    11041 actctcaata tagcctttag cttgaaaaat tccaactaaa gcttctacaa ctttagaatg
    11101 taaaagcttg gttgtttcaa gctttctcat tcctgcattt ctgatacgag tgagtgaatc
    11161 tgaaataata tcatttatca tattttatcc ttaccaactt gctttcttaa gacctggaat
    11221 caaaccttca ttgcccattt ttcttaagca aactctgcaa attccaaaat ctctataaac
    11281 cgaatgcgga cgcccacaaa tttggcatct tgtataagct ctaaccttaa atttaggctt
    11341 gcgtgccgct tttgcaatca ttgatttttt agccatctta ctttcctttt gtaaatggca
    11401 caccgataag ttctaataac ttttgtgcct gtttgtcatt ttgtgctgtt gtaactatag
    11461 aaatgttcat accatgagtt cttaaaattt tatcatactc cacttctggg aacatcaact
    11521 gctcatcaag accgaagtta tagtttccgc gtccatcaaa accatctcta cttaaacctc
    11581 taaagtcttt cacccttggc aaagcaatag aaattaattt atcaagaaaa gcatacatat
    11641 tttcttttct taaagttacc attacgccta caggaaaacc ttcgcgaact ttaaatcctg
    11701 caactgattt tttagcttta gtaatcacag ccttttgtcc tgcaattaaa gaaatagtat
    11761 ctgcaacatt ttgcaatact ttttgatctt tagccaactc accagcacct acgctgataa
    11821 ctactttttc gatcacaggg ataagcatag gatttttaat atcaaattct ttaaccaatg
    11881 caggtttaat gctttgatta tatttttctt ttaatctcat catcgcttac tcctgaactt
    11941 ttgccacatt ggaaatatcc attggcattt ctttattgat aaaaccacca tttgggtttt
    12001 tctcactcgg cttaatagct tttttagcga ttttacatcc ttcaactacc actttaagtg
    12061 tttttggata taccgctaaa actttacctg ttttaccttt atcatcgcct gtgataacct
    12121 taacgctatc accttttttg atttttaatt taaccgccat tataatacct ccggtgctag
    12181 tgaaacgatt ttcataaagc caccatatct aacttctctg cccactggcc caaagatacg
    12241 agttccgata ggctctcttt tgttgtcaag aataaccgca gcattttcat caaaacgaat
    12301 caaagaacca ttatctctat gaatttcttt tttagttcta acgataaccg cttttaccac
    12361 ttgacctttt ttaacttttc catttggtaa agctttttta acagatgcaa cgattacatc
    12421 acctacggta gcgtatcttc ttttgctacc ccctaaaacc ttgatacaca ttaattcttt
    12481 tgcaccgcta ttatcagcaa ctgcaagtct tgtaaaactt tgaatcatta ctcaactcct
    12541 gtagctaata cagattttaa gcgaaatgat tttctttttg aaagtggtct gcattctact
    12601 gcaacaacag tatcacccac tttaacttca tttctctcat catgaattag atatttttta
    12661 aagcgtttaa caatttttct atatcttgga tgaaccactt ttctttcaac caaaacactt
    12721 gcggtttttt caccagcgat tttaacaaca acgccttgaa tttctctttt aaatgccatt
    12781 ttctatcctt atcttaaagc gttaattgct gtatttattc tagcaatgtc tttttttact
    12841 tggctaatct cttttggatt agtaagttgc attgttttta gcttttgttt taaagtgaat
    12901 aaaagcacct ttttttcttt tagcattgtt gcaagctcag ctgctgtttt atctttaatc
    12961 tcagtatatt tcattttggc tctctcttgt aacaaactta gttttaaatg gaagtttatg
    13021 catagctaaa gtcaatgctt ctcttgccat ttcttcgctt actcctgcca tttcataaat
    13081 gatacgacct ggcttgatat tcattaccca ttcctcaaca gcacctttac ctttacccat
    13141 acgagtttct aaaggttttt ttgtcaaagg cttatctgga aaaactctaa tccaagtttt
    13201 tccttgtctt ttaacaaaac gagttaaagc gatacgcgct gcttcgattt ggcgtgagtt
    13261 aatgcgtcct gcttcagttg cttttaatgc aaattcacca aaagtaaatt ctgttccacg
    13321 attagcataa cctctgttac gccctttcat cattttgcga tatttagttc tttttggcat
    13381 taacatgatt atttacccct tcttgtgcgt cttggctttt tagctggagc actttcttca
    13441 gttttttcag gttgcatacc tttgtgcaat acttcacctt taaagatcca tactttaact
    13501 cctatgtttc cataagtagt tctagcttct gcaaaaccat aatcgatttt tgctcttaaa
    13561 gtatgaagtg gaacgcgtcc ttcaagatac cattctgttc ttgccatttc agcaccgcct
    13621 aaacgaccgg aaactgaaac tttaattcct ttagcacctg ctttttgcgc accttggatt
    13681 acttttttca ttgctcttct aaaagcaatt cttttttcaa gttgagttgc aacactttca
    13741 gcagcaagtt gagctgaagc tcctgctttt ctttcttctt tgatattgat atttacatct
    13801 ttaccgatta aatcttgcaa ttcttttctt aaattatcaa catcactacc ttttttaccg
    13861 atgatgatac ctggtcttgc agcaactaca gtaacgcgaa gttttttagc agttctttct
    13921 actaaaattt ggctaattcc tgcgtaataa agttttcttt ttaagaaagc tctgattttg
    13981 taatcttcac cgatattttc tactaaattt gctttagttg gaaaccatct tgattcccag
    14041 tttctattga ttcctagtct tagaccaatt ggattaactt tttgtcccat tagctttcct
    14101 ttttcactgt tgctttttta gtgcttgttg tttttttagc tggagctttt gttgtagtag
    14161 tttttttagc tactgttttt ttctcttcag atttcacttc cgcttttgcc acttctacta
    14221 aaatatgtga agttggtttt ctaatacgac ttgcacttcc tctagctctt ggtctaaatc
    14281 tttttaatac cgcagctgcg tcaacacgac aactttttac aatcacttcg tttgcttcaa
    14341 agccaccatt tgctactgcg cttgaaattg cgtttgcaat gtattttgca cctttatttg
    14401 gcataaattt taaactagcc atagctaatt ctgcattcat cccctgaact tctctagcaa
    14461 tcaatcttgc tttagttgga gataatctta tgaatttaat taatgcttta ctcatatctt
    14521 atcccttact taccaatttt cttttgcaca gagcctttat gccctttaaa tgtgcgtgtt
    14581 ggagcaaatt caccaagttt ataaccgatg tgattttcag taatataaac cggaatgaag
    14641 cttttgccat tatgaacatt aaatgtaagt cctatcatat caggagtaat tgtgcttctt
    14701 cttgaccaag ttttaattgg tttattatca ttagcctttt tagcagcgat gacttttttc
    14761 attacatgat catcaacaaa aggacctttt tttagtgatc tagccatctt actttccttt
    14821 tcttcttgaa attattagct tatcgctagc ctttttacga cgagttttcg cacctttggt
    14881 tggtttaccc cacggagtta ctggatgacg gcctgaattt ttcttacctt cacctccacc
    14941 gtgcgggtga tctactgggt tcattgcaga accacgagtt tgcgggcgga tacctctatg
    15001 gcgatttcta cctgctttac cgatagttac attagcccat tcttcatttc caacttcgcc
    15061 gatacttgcc atacattcag ctaaaacttg tctcatttcg ccacttgcaa gtcttaaaat
    15121 aacatatttt tcttctttac ccataagttg tgcataagca cccgcagaac gaatcatttg
    15181 accgccttta cctggtttta actcaacatt atgaacaata gtacccacag gaatgttttt
    15241 aagtttcatt gcattacctg gtttaatatc aagtccgctt tcagcagctg caacgatatc
    15301 accaacgctt aatccacgtg gttgaagaat atatcttttt tccccatctt tataagcaat
    15361 caaagcaatt ctacaatttc tgtatggatc atactcgatt gcttctactt tgccttctat
    15421 accgaattta cgacgtttaa aatcaataat tctgtaaagt tttttagcac ccgcttcttt
    15481 atgacgactt gtaattcttc catagctgtt acgacccgcg tgtgctggaa gtttaacaag
    15541 tagtgagcgt acacttggtt tagctgtaat atcttcagaa cttaaacctg tgatatatct
    15601 tctacttgga gtatatggtt tataagtttt aattgccatc ttaagcctcc gtattttcta
    15661 agctaacacc ttcaggtagc ttaacataga attttttgta attgtttctt tgacctaaac
    15721 gacctctaaa acgcttaatt tttccatcca ttcttaagga attgatgctt tttggagtta
    15781 caccaaaata ctcttttaaa accactttta agcctgtttt agtcattttt ggcgaagttt
    15841 gaataactac gacaccttgc tcttgcaaat tcaaactttt ttctgtgtaa agtatagtct
    15901 ttatatcagt aatatctgcc ataattatcc ctcttttgta atagattcta acgctgattt
    15961 ttccataata acagcattaa atacagacac taaataagca tttacttcag ttacatcaac
    16021 tacatagcaa tttgctaaat ttctgtaagc taaaagtgtt ttttcatcta gtaaatcttt
    16081 aacgattaaa gcatctttga cgccaagttt tttaatcaca gcgtttgcat cttttgtttt
    16141 accactttca atagccaaag aatcagcagt aaataacaca cctttagctg ctttatctgc
    16201 taaagctctt tcaagcgcca atcttttttg ttttttattt actttttgga agtagtttct
    16261 ttcatttgtt ggaccaaaag caaccgcacc gcctacccaa acgttagttc ttgttgaacc
    16321 cgctctagca ccgccacgac ctttttgtct ccaaggtttt ttaccaccac cacttacatc
    16381 acttctacct ttagtatgag ctgtatttgc tcttaaactt gcaaggtaag attttacata
    16441 caagtaaaga ttgtgtggat ttacttccgc atattttgaa ggtaaatcaa gttcacctgc
    16501 tttttctaat ttatcattta aaacaactac tttactcatt ttgcaatcct tattttaccc
    16561 atagcaccat tataacctgg tactgcacct ttaactacta aaattttatt ttcagcatca
    16621 taagatacaa cttcgttttt aacggtcact ttagtatttc catagtgtcc tgccattttc
    16681 atacctggtt gaacacgacc tggccattct ctattaccaa tagatccatg gcgtctgtga
    16741 aatctagaac cgtgacttgc tggaccccct gcgaagttat gtctcttcat aacaccgcta
    16801 taacctctac ctttagtgtt aaagcttact tttaaaattt ttgcttcatt taatggagtt
    16861 tcatctaaat ctcctgcttc agtatttgct acttctaaag tcgcaaatct attgtattct
    16921 gcagaaagat tgtatttttt ttgttgtcct gcgacacatt tattacttgc tttacctttt
    16981 ggatatgcta ctaaagcctt tccgccttca acttcacata cttttgcatt tacaactctt
    17041 agtaaagtta cagcgatact tggattagta attgttctgc tcattccaat tttttctaca
    17101 atatattcca tatcttatcc ttacttaccc atagctctta cttcaacgct tacttctggc
    17161 gctaaatcaa gcttagttaa agaatcaact gtatctggag tcgctgctac tatatctagc
    17221 atacgcgcgt gaattcttat ttcaaactgc tcacgagaat ctttgttaat gtgtggagat
    17281 tttaaaactg tatagcgttt gattttagta ggcattggta tcggacctct gatatccgca
    17341 cctgttcttt taacagcttc tacgattgct gcaactgttc tgtctagtac tcgatggtca
    17401 taagctttta gcttaagcct aattctttcc ataatatttc ctttaaaaag aactcgttag
    17461 ttaaaaacta accaatttat aaaaattgaa atgagagtat ataaaatctt gttttcaaag
    17521 tcaaggaatt tgatgaaatt tttctattat tttcctttta aaaaggataa aaatagaatt
    17581 tttagaattt aaaaattatc attatttttt aaatttttat atataatggt caatatctta
    17641 tttcattaaa ttttaaaaaa tctcttaatt tttcatattc gccattttct aaataacgat
    17701 gttttcccgc cttcaacata ccaagatcta aagccccaaa agcaacacgc ttaagatcca
    17761 tgacttcaag atcaaaatgt ccaaaaaagc gtctaagctc tctattttta ccttcattta
    17821 taaccactct aagcttagta taacctccac ttgatccaaa aatttcaaag tctataaaag
    17881 gagcaaaact catagaggta attttagttt ttgcatgtgc gccttttttt tcgtttttaa
    17941 tctcaagtcc attttgcatc gcttcaatga cttgtttgct caccgtacct ttaactttaa
    18001 ggtagtattc tctttctaaa tcgctatgca ttaaagcatc ggcaatcaca ggagaatctg
    18061 taagcaaaag caagccctcg cttgcataat ctagtctgcc tacactaagc caagtactaa
    18121 attgtcttgg caaggtatca tatatagttt ttcttccacg atcgtctttt ttactgacaa
    18181 tttcgccttt ttgtttatgg tagattatca cgctaaattg cgttcttttt tgcactcttt
    18241 tacctttaac aaagacttta tcatcaaatt taacttcatc gcttaaaagg gcaattttgt
    18301 tgtttatttt tactaagcct tgtttgataa gttcatcggc ttcacggcgt gaatagcggg
    18361 tgttatggga tataaattta ttaattctca tttgatcttc cttaaaaagg gcgtttttgc
    18421 ccttttttac attacaaaaa tagttggaac tatggttggg tattttttaa tctttctaaa
    18481 gatgtgtttt cttaaaactt ggcggatttg attttctaaa aatcttggat cattgagtac
    18541 ttcatcttta acattgatga aaaattgtcc taaaacttca gtcatatctt tgctaaaagc
    18601 atgatcgtgt ttgtcagcta ctagcccata gctaaatact cttggtttgt tgatcagtgt
    18661 ttttgtagct ttgtcaattt gtgcgataat aactactata ccactatctg caagtttttg
    18721 gcgatctata actacatcat cggcgatttg tttgttgatt tgattatcta caaaaacttt
    18781 acctgttttt acggttttta tgcgtttgac atatttttgg caaagttcta cttgatcgcc
    18841 atcactcata agataaatat ttctttcagg gataccgcac ttcatcgctg tttctttgtg
    18901 tttggtgatg tgattgtatt ctccatgaac tggtaggaaa aatttaggct tagtaagggt
    18961 tagcataagc ttttgctctt ctatactagc gtgtccgctt acatgaattt cactaaattc
    19021 ttgatacgct actttagctc ctgcttttaa aagatagtca agcaccgcag aaacacttgc
    19081 ttcatttcct ggtatggctt tagctgaaat aatcacttga tctgtaggtt tgatttttat
    19141 aaatttatgc tcatcagttg ccattctata aagcgcactc atggtttcgc cttgacttcc
    19201 tgtagttacg ataagcactt cattgtcttt atatttgctt acttcatcag catcgatgaa
    19261 aatttttcta tcaagtttga tgtagcctaa ttccatagtg gtataaagat ttctttccat
    19321 agaacgaccg atcacacaaa cttttctacc gtattttaaa ccataagtga tagcttgata
    19381 aacgcggtgg atattagaac taaaagtact catgatcacc ctgcctttgg tacgtgcaaa
    19441 gatttgatca aaagttggcc ctacggagct ttcacttttt gtataacctt ctttgtacga
    19501 atttgtacta tcgcttaaaa gacataaaac cccttcttct ccataatgtg ccaaacgtcc
    19561 taagtctgtt ggatagccat cgattggagt ttgatcaatt ttaaaatcac ctgtgtggat
    19621 aatcgttcct gcttttgttt tgatcgcaag cgctgaagca tcaatgatag aatgcgtgat
    19681 gtggatccac tctatatcaa attcgcctat ctcataaaca cggcgttttt ctacagggcg
    19741 aaaccatttg cgttctgctt ttaagccatg ttcttcaaat ttgtttgaaa tcattcctaa
    19801 agccaaaggt gtagcgtaga taggaaattg gaattcttta aagaaataag gcactgcacc
    19861 gatatgatct tcgtgtgcat gagtgatcac tataccacga attttatctt taatttttct
    19921 tacatagtca aaatcaggga tgataatatc taccccatgc atagttccat caggaaaact
    19981 catacctata tctactataa ttgcatcttt attggtttca aaaacactga tatttccacc
    20041 aatttctcct aaacctccta aaggagtgat gcggatttta tgctcgctag aattattata
    20101 ttttaaaggg tgtaagcggt tttcatgtga aatacggtta gcttctatgc attctgcaag
    20161 agcgatttgc caatcttcat tacctgtgag ttttgaagga agattgcgat ttttcttctt
    20221 ttttttctca gttttatttt ctgagttttc agaattttcc ttgttggaat tttgatcaat
    20281 ttttggagta tcattttcat tttgcaaaga atcagctaat ttttttctac gatttttata
    20341 tttatagcgt ttattgtttt ttgaatttga gttcggattt tgttcgtttt tatttatctc
    20401 tttgttttcg tccatattca tcctttaatt tgtcataaat tttaaggtat aaatcaacgc
    20461 aaatttcatg tggtctgatg ttttctttta agccaagagt gcttaaaact tctaaaactt
    20521 ttgctttata tgtttttaaa tttcctaaga gttgttttct aggagcttta aaacaatctt
    20581 ttagaaaatt tttgaaattt tctatttcgc aaagttcatc aaaatcctta gttttaatca
    20641 aactcatcac cgctgacata acttttggtg gaggattaaa acattgtgga tcaacatcaa
    20701 aaagtatttt tctttcgcaa atcattgcac ttaaaacacc taaggaagaa aactcactat
    20761 ttccttcttt agcgcagaat ttttcagcca tttccctttg tgccattaca ataagcccta
    20821 gacaattttt atcttctaaa gcttttaata taatgtgact tgcaacataa taaggcaaat
    20881 ttgcaaccaa aaaatatggt ttttcatcaa gactaggatt aaaagcttcg cttgcgtctt
    20941 gatggatcaa gttaaatttt ccacattcaa gttctttttg aaatttcttt tttaaaatag
    21001 gtatgagatc attatcgatt tcataagctt ttacttgaga aatttttaaa agttcttgcg
    21061 ttaaatcacc taagccaggc ccaatctcaa tgatattgtt catctctttg ggtatggctt
    21121 ggatgatttt tgctaatacg cttttatcga ttaaaaaatt ttgtccgtat tgtttttttg
    21181 ctttaaccat aagaaataat tttatctaaa aattcttaat taagtctttt taggtagaat
    21241 tattttttgt aaaaatttca taaggatcaa aatgattatt tgtgcgggtg gaaatgaaaa
    21301 tttttctttt gcaaaagcta taggcatagg tttggttgaa tcagcttttc atttgagtca
    21361 actttgcttc aaagaaaaac catcaaaact tatatttata ggaacttgtg ggctttatga
    21421 taagggagag attttagaaa tttatagaag ttcgcacgct tttaatgtag aattttct
//
LOCUS       DAPOLW010000009        21395 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.009, whole genome shotgun sequence.
ACCESSION   DAPOLW010000009 DAPOLW010000000
VERSION     DAPOLW010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21395)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21395)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21395
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.009"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(94..483)
                     /locus_tag="ROE18_000254"
     CDS             complement(94..483)
                     /locus_tag="ROE18_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF882 domain-containing protein"
                     /protein_id="HDX3650477.1"
                     /translation="MKNNPYFKESEFKCKCGKCELPQNVPSDELIDILCEIREHYNAP
                     IIINSGYRCKEHNAEIGGAPKSQHTIGSAADFVVKGVKTEEVHQYVLNTYGERGLGIA
                     IKHNFNDPYAGFVHLDTRGKKARWTYP"
     gene            631..1065
                     /locus_tag="ROE18_000255"
     CDS             631..1065
                     /locus_tag="ROE18_000255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650478.1"
                     /translation="MLKSFENELLELLKDFKVRMYLGEFEDTQNIASCINNLDASLLL
                     DFEGESYKDLENKVGTWKLYILTHTKSKAPKHRIDAKHKLFDAIEAVDKVLLNAEPSN
                     GFRIELKDLKKVYEGISDHGYLSIYARTLQSSFLPKDDFLRI"
     gene            1067..1882
                     /locus_tag="ROE18_000256"
     CDS             1067..1882
                     /locus_tag="ROE18_000256"
                     /inference="COORDINATES: protein motif:HMM:NF021627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650479.1"
                     /translation="MLFINKENLVEVSNDKPIKVAIKGEWKGHNNGRFKVDDKDLNSM
                     IDNFNQKKIDLVIDYEHQSLKNEKAPAAGWIKELYLENDALMAKAEFNEEAKKYIANK
                     QYRYLSPVFEFNSKDNKSGELVRAKLHSVALTNTPFIDELGELIANKNNIHQNKGEKM
                     DEKIKELESQIIALKNENSSLALQNEALKKQNEESVKNLASSLVDNALNSGKIANSQK
                     EWALMYACKDLEGFKSFLDTKNDQVQVPKNNVFANKNTAKTNEFDVVKMMLGD"
     gene            1885..2412
                     /locus_tag="ROE18_000257"
     CDS             1885..2412
                     /locus_tag="ROE18_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650480.1"
                     /translation="MAKAKKETQNLENEDLETGDLPKALSLEDENLANEEAVSENETA
                     KEFINEEGEEMPSKITPKSLSNDPLIAMPKSLESFINKDLFSINAKIDLETNESLALG
                     TLLISEDFGESFKKCPNEDISAKENVKLAMLKDHALSSGVYGVLLAGEINLKGVHVSA
                     VKKAFMQNLIINTKE"
     gene            2415..3392
                     /locus_tag="ROE18_000258"
     CDS             2415..3392
                     /locus_tag="ROE18_000258"
                     /inference="COORDINATES: protein motif:HMM:NF015802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HDX3650481.1"
                     /translation="MDLEQLLELFSSTKITEVINQTKASPRFVSDTFFKDKIPSLEST
                     VRVEIIKGAGIVLNSISDNGEHSLENTKDAYILNIPLPRFALAKRISASEINSLRSLA
                     LQEAQAKSLSGALGVLVKEMKESFNTTLEYMANGALFGKILDGKGNVLFDFGSASKKA
                     VSVKKDGSVTLASVCDAIDSAIIDEFGTSADYEVLCGNELFAAISNLALSEDLYKNHL
                     ASRDEKDKSLILYGTKYRRYSAKYKNTNGKSVEFLKGTEGMVVPKDNSNRIYYTRANH
                     TDALGKAPSLMFVSKPEILPRGAGIEIVGEMRAMPVCTRPNGLIKLVLE"
     gene            3507..3965
                     /locus_tag="ROE18_000259"
     CDS             3507..3965
                     /locus_tag="ROE18_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 family protein"
                     /protein_id="HDX3650482.1"
                     /translation="MNYQDILEEKLITETKTHFFMIDEKDLIKELSVHAIAELSDLNA
                     DGVCDKEVIDDAINDAQSYIASFIKIPKNPTPLLKDICVKLTIMELKRRNDFPKESLE
                     EIREWANDLLLKMANKKIPTEISEDDFLPQNKVRAFKIKRKRMDLRRLNG"
     gene            3958..4557
                     /locus_tag="ROE18_000260"
     CDS             3958..4557
                     /locus_tag="ROE18_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004297483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HDX3650483.1"
                     /translation="MAKNLTSTTKPKMAKVGCGLQVGAESETPARKDKFTSSAKSQNN
                     LKDLAKELYIAGFDIFKIAKILNRNEKTIRNYKAKDGDWDKQKANLLTSKIKDKESAS
                     LYESFTEQMFCAIENINTDEKMNAEKKTEAIARIGDSFSKMRKVARLEDPSSYRLNVA
                     KKVVEIIISHLKNDKDCVAKLVSLLESGVIEKEILAMDI"
     gene            4557..6227
                     /gene="terL"
                     /locus_tag="ROE18_000261"
     CDS             4557..6227
                     /gene="terL"
                     /locus_tag="ROE18_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HDX3650484.1"
                     /translation="MLFSKEELDEFLISNEQKHENTPNELKGAMQRKDFLEWMDELKN
                     ELKTQFLHESHLDPTLKEERIKRASVDFDYFARTYFPHYFTIKGECGLHLHLNEVFTK
                     IALKKESKGEKHAIAAPRAHGKSTYTSQLFPLWCLVFNYKSFIVEISDAVELMEGMLE
                     AIKAELEDNPHLKLDFPEVVGIGKTWRVGEFVSNNGVKIKAFGSGKRLRGVRYGVKRP
                     DLVILDDLENDTNVRSKDQRDKLEDWVDEAVLNLGSADGSLDVLYIGTILHNDSVLSR
                     KLKLGFWNPKVFRSIEEFPQRLDLWDEYAMLYRNADFNTAHQFYLKNKVLMDKGAKVL
                     WKEAKSLEDLMKLRAENLKAFNKEQLNNPRSENQIFSLDGINFYDDLPAINQYYMYID
                     PAGEKAKSDFTAITIIGKGAKGFYVAESIVKILKAQSIIKTIFNLQKIYKCRLIEIET
                     NGGQFFLKKWLQEKSLESGVFLPLRGKNNSVSKFERIESLSLAFENEELFLHKSQTML
                     INQLLEFPEGKNDDAPDSLAGAFLLARTKSSIKRRKHHFNSVSRIRRF"
     gene            6237..7607
                     /locus_tag="ROE18_000262"
     CDS             6237..7607
                     /locus_tag="ROE18_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 family protein"
                     /protein_id="HDX3650485.1"
                     /translation="MKKEIKSKREVILKNNSLINTLINSSYLNVLKISENDQKMIFKD
                     LSFTQAHQSRRSVILAKELQIVCENEKIKESFEYLFNPDLLSQILETYLYGLNVFEVN
                     YKLKDGFYYPILKQRDFRNFGFNENDELVYNGNGCEEIVEDKKAIYGLFGSNFLFKNG
                     DALLTKLYFPVKLKNASLKFWMEFLERFGSPWAVAKTDSDPDALASEIHQMLNGDSAV
                     IDKEEELDLIQPKAKANYNEIIDYLDNQIRSVVLGANLSSQVSGGSLAAAESHNQIRK
                     DLAAQDGQIVLFILNRAIKFFKEINHFKDELYVQFFSEAEPKSELCERDLKLFNMGFC
                     FDEEYIKSTYNVEGELIRETLEKKDFKDLENDKKVFENKVKLESFEEDFIDKGLEQKE
                     YLKVDESMSKFFQEQFESIVKDCKDFNEALNKLKENFSSLEQSEFEKHLFIALNNSSI
                     LGYLED"
     gene            7609..8847
                     /locus_tag="ROE18_000263"
     CDS             7609..8847
                     /locus_tag="ROE18_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650486.1"
                     /translation="MTGAKIGFFSEPTKAVDFLKNKKPELSFDYDELSYSTHKKVFTI
                     AKLMDESLLKDMQDTLVNAIKNGDKFSTWSKIAEEKLKAKGWWGSKEVINPKTGEVKK
                     THFNSARLKKIFEENSRKAKAKAIYENQMKSTKPYFKYCTQKDSLVRDKHRAFDGIVL
                     HKDDPFWNSHYPHVTMHDYGCRCYVLEVGESEVKGLKIPPSNAKESEFNGFNDEELLD
                     ELYKQKNTEVIQNFIKLDMLSAAAKKTKEVKSFTHQKELYTWQKSLDDMVDEVIIKDN
                     QKYPINFIQVGKMDKSTKEFLEKLNKKDLEDLYFALSKNNLLHASPKRKASYNQALSV
                     DEIKQIVKVLDEAKEVYWDNANNSLLYFFKDKKDASRINKIVITPDYKLKKFGKTNAI
                     VTLGKVEAINKDNKTYIKIR"
     gene            8973..9347
                     /locus_tag="ROE18_000264"
     CDS             8973..9347
                     /locus_tag="ROE18_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDX3650487.1"
                     /translation="MVLALGEFEFKALNFDNLERSLEYNIQSQNRLNNHNALFASSKE
                     SEKIKIQGKTLPLKGDRNTYLDKLENMAKEQRSFILTGANGKYYGKFVILSLNENRSA
                     FVDGSGFVAQSFSIDLERDFDE"
     gene            9340..9531
                     /locus_tag="ROE18_000265"
     CDS             9340..9531
                     /locus_tag="ROE18_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HDX3650488.1"
                     /translation="MSKIYIAKNNERLDSIVYKHYGTLLYFNQVLLANPRLEPLLKTG
                     DKVILPSIKIKESKEKALW"
     gene            9525..10502
                     /locus_tag="ROE18_000266"
     CDS             9525..10502
                     /locus_tag="ROE18_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDX3650489.1"
                     /translation="MVRKPKFKLIAKGEDITEKLSKNLISISYEDKEKAESDEISLSV
                     FGLYSKPLFGDSLELWLGFEKLYKCGSFSVNVVSKNYTSNTTEVRASAINFSGKGSVN
                     IKEKKTRSFENTTLFTIARKIANENNLKIKTSGEDQNIVSILQNNQSNLEFLYSICFD
                     YGFICCVKENTLIITPKDGKIGDNAANITSKNENLPLFEIALKECISLEISESARNEY
                     SAVIAEWQDINEAKIKSIKVGSGENIYKMQISQPKNDNEAFKKAQAKLNELQKGGLNG
                     RCELIGREIRAGGKLKIKDINMDHYEFSIKSVSHSFNDQAYIISVEFES"
     gene            complement(10499..10783)
                     /locus_tag="ROE18_000267"
     CDS             complement(10499..10783)
                     /locus_tag="ROE18_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002888031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HDX3650490.1"
                     /translation="MLSNNEYFEYFIDFVKNNDKREILKEFGGANIYIPSYKTLFRDE
                     ELKQDFKTLIKQGISTKNASVECAKKYDLSLNAVYLITKELRENLEPSLF"
     gene            10877..11548
                     /locus_tag="ROE18_000268"
     CDS             10877..11548
                     /locus_tag="ROE18_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HDX3650491.1"
                     /translation="MKKIISVLILALSLLNAKSFEESKKELVKFYNDLGSSYWYDFYC
                     QAPFKVNKKGKYISFEVIKSDLYAPRNEYTKKGKINQRIKRIEWEHIMPAQNFGKHLP
                     CWKEGGRKACKNDPTFAKMEADKQNLVPAIGEINGDRSNFRYAEAPTNLKYTQYGNCK
                     VYTDFKAKRFYPANYSKGWIARSYLYMSKTYNIRLSDQERKLMEAWDKQYPMDEKEKR
                     IRALL"
     gene            complement(11540..11815)
                     /locus_tag="ROE18_000269"
     CDS             complement(11540..11815)
                     /locus_tag="ROE18_000269"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650492.1"
                     /translation="MILEIHSYDAEFFLTLGIEKHSQIAFAAKRTSLEIMHNGITHQI
                     KTDKDFGILLNVVCNIREKLDESFDEEDKSLVIDIDEIVAKVCKELE"
     gene            complement(11862..12311)
                     /locus_tag="ROE18_000270"
     CDS             complement(11862..12311)
                     /locus_tag="ROE18_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1018 domain-containing protein"
                     /protein_id="HDX3650493.1"
                     /translation="MNTQNTLKKHLIKIIHTLRKDANLSDDESYRWVLNQRYGKASSK
                     DLSIDELRDFAITLGYDEKFLKKQNTKKARYFKKENTKSGRATKKQLNMIQAIWSKNA
                     KNPTQWALREFINNIVKKRPLHLWYLSIEDANKVILGLKNLENNSTH"
     gene            complement(12308..13000)
                     /locus_tag="ROE18_000271"
     CDS             complement(12308..13000)
                     /locus_tag="ROE18_000271"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650494.1"
                     /translation="MDNAKEALKELFGISEVQAVVIEKLYFKAKTPKDILGFKKYYDL
                     TMLKKQFVGTSYEKLSLVCAFAELDLNLRYKNIESFLEWLFISFSNRFIFQTKKGDFS
                     YSFALRYYDGNIVYDELGKPVLKHVDCGDNLYFINANKELCDEQRKPLNVGEFYNKLV
                     EYMFKNQDKIIFDNKIEISPVIKTQIPSQTKINKDYEQNYLEYKKNQNKLYNANIDKF
                     TSKLEQILKAKK"
     gene            complement(13000..13269)
                     /locus_tag="ROE18_000272"
     CDS             complement(13000..13269)
                     /locus_tag="ROE18_000272"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650495.1"
                     /translation="MKFNPPSKEDLIKAIDEFNAKNSCSIPYFIADSFINYYKQDDGR
                     WLMANKKPLKCWKRALNSTWLPKLANKYKNKDKQKALASWLEEEF"
     gene            complement(13266..14228)
                     /locus_tag="ROE18_000273"
     CDS             complement(13266..14228)
                     /locus_tag="ROE18_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650496.1"
                     /translation="MNLDFLNEFKLKNKDLNEKLEFLIPDFLVKKAITIIYANGGSGK
                     SYLSAAISKTLCKDARVKSIVYVDMDNPLNVLNERGFGELILNESKFTYIHRSSLKTS
                     AYELLEMIEGKGVAGSYEGVLFVLDSLRNFADIDNDTKMMSLMSLLMNLRECGATIMV
                     LHHSTKDGRAFKGSNHIRNSSDCMYFLQKVANLEQGFEVLLSVQKERAGIKDQAFFIN
                     TKTLNIKNTDLQNAKISDKEEAFIDKVLKLLNEKSLSTSEILSALDVSRSDNFSRNTL
                     EKFKGVFWESELGGENGRTFVWKSLKADNKDSNDKELSLFGDEL"
     gene            complement(14337..14762)
                     /locus_tag="ROE18_000274"
     CDS             complement(14337..14762)
                     /locus_tag="ROE18_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650497.1"
                     /translation="MKLQDFDFRIWDKTKEEFLKKEPTLIKIDNERVIAGRISRFYAN
                     TADITDMFIGNGNDLEIELWTGIYDKNGKKIYEGDIVKTKSPYDCFLAKVGIHKEGTF
                     YLESKSRDYIGSLIYLVKDEGYDTEIIGNIHENPELLKC"
     gene            complement(14759..15031)
                     /locus_tag="ROE18_000275"
     CDS             complement(14759..15031)
                     /locus_tag="ROE18_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650498.1"
                     /translation="MYVNVSIDASDLEDIDAHDLAELFEDLSTKEQEEFFGIIHKDIK
                     PLERIRAILSNLSNDEALKLLKELNNEFKSDEEWQKTIKSINGGNK"
     gene            complement(15095..15280)
                     /locus_tag="ROE18_000276"
     CDS             complement(15095..15280)
                     /locus_tag="ROE18_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002903050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650499.1"
                     /translation="MRELSLAAFKLLNSVFKTKTAHFNGFLELDFKNKPKLKKQSFKR
                     KKKMGAKQKIRLRKRKI"
     gene            complement(15277..15762)
                     /locus_tag="ROE18_000277"
     CDS             complement(15277..15762)
                     /locus_tag="ROE18_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host-nuclease inhibitor Gam family protein"
                     /protein_id="HDX3650500.1"
                     /translation="MQINSFEDVNLALKKVAELSVKIEKINGEVTLACNEIKEARAGE
                     IKVLSDELGYIEQCITTFCENNKHEFAEKRSKEFTFGKIGYRLSKSVSLPRVKEKFDN
                     LIKALKSYGLNDCITYKEELNKDAIVELDDTTLVKLGLKRVVKDNFRIEPKIESLEIE
                     K"
     gene            complement(15869..16210)
                     /locus_tag="ROE18_000278"
     CDS             complement(15869..16210)
                     /locus_tag="ROE18_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650501.1"
                     /translation="MALVYVASPYKALVVRESQRKAQAISIAQQECLKIMRECEGFVP
                     VSPILQFSYLDENKHRDKALQMGLELLKACDYIYLSKHKDAKYSQGMQEELALAKKLG
                     IKELVLELPLQ"
     gene            complement(16267..16452)
                     /locus_tag="ROE18_000279"
     CDS             complement(16267..16452)
                     /locus_tag="ROE18_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650502.1"
                     /translation="MIPMIKGEKADYSASLFEIKGVSIIYKESGVFVDVLKGIYPDYI
                     AKKIIRFHLGKKLNKSA"
     gene            complement(16449..16640)
                     /locus_tag="ROE18_000280"
     CDS             complement(16449..16640)
                     /locus_tag="ROE18_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma-70"
                     /protein_id="HDX3650503.1"
                     /translation="MSFEEIAKELNLSVTRVHQIYTEALRKLKSPKNKDKWMAIFETI
                     DLIKKEKVKKENLIQGEKK"
     gene            complement(16643..17566)
                     /locus_tag="ROE18_000281"
     CDS             complement(16643..17566)
                     /locus_tag="ROE18_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDX3650504.1"
                     /translation="MQLVELTKKFLSTQNISQNNLSDRLGINKSYMVGYMKEGSSYKY
                     ALKVEPLLEKYIKSFVEEKSVKELQTPFIATKDAKAINVTIESAMSNREMGVIIGEAG
                     TGKSRAIKEYAAKNGTRVVLFEATTETSKRMLLVGLENKLNVCFKGSLDDKIRGIASE
                     LARTSKVLIIDESEHLPFRALECLRRIYDFSNTALILVGTRKLKNNLTGIGRNDYNEY
                     GQLSSRIGAKWELKGLCYQNKEGLKNEDLKTLCNHFDVEEKKAIDLVFNLARGNFRKS
                     EKLLKRACEFADGKAVELKHIEAAASFLMLG"
     gene            complement(17637..19712)
                     /locus_tag="ROE18_000282"
     CDS             complement(17637..19712)
                     /locus_tag="ROE18_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDX3650505.1"
                     /translation="MSYFLETKEAAQTFNVSTGALRLAVSRNSNKYEWLKVDNEKGGR
                     GGKKLLFKISKDELLTAFNQELISKNTLIFNEKMQKVKLSEIITTDNLKTTNNSLKTS
                     NLNLTEPKIDNDLAVLNIKFENLSDEIKNNAREKLKSLKQVEKYIEGGLKQKRALELC
                     GISKIEIFRIRKAYKENGILGLIDTRGLHRKDKTKLSAWMQEYALREYRTFGAGGFNF
                     TELWWQIHKEAAIKENYDFIGFDLGKVKPLFSVKTLQNFIKNYYKDKPLEHCIITQGL
                     DKAKSKFLPAQGNQRELYDMKNMCWQIDSSPADFIVRDDETLEPFRPHILSVVDVFSG
                     MGVATLVGKSNSLSLTRLLWKAIDKFGKPDMIKGDNGKDYLSKDFQSLLDSLNISYDA
                     AIAYAGEQKALVERRFGTLQRARLSQMHGHIGNSLAKREMIEQKTPKKERKAKDEYGF
                     AKKTNQKLLHTFSEACELLEAEVIKWNMSKVRRKKGVKTPLELWNSCDRSIVKISYEE
                     FLFNAGNKELRVVGKKGINFESRVYKSALMPSVGTRVKCVQNIDNIKELFIYDLSGNF
                     LCLALDESIAKLSKESYKMLKKGYESEVKAIKEVLKKDEIAAFTKLNIKQDLQDLQSA
                     FENSLVEAKEVHQKSLAKEALKTQRELEEIKNNANADELILNAKKEINNDESEFDMEA
                     FVEKKYFAG"
     gene            complement(19709..19909)
                     /locus_tag="ROE18_000283"
     CDS             complement(19709..19909)
                     /locus_tag="ROE18_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650506.1"
                     /translation="MLKQYFEDNGINIKKFAQKHNLDYLSTIRVIKGEYLGKYKAKKN
                     TRAVYEKLLELKIIDEMPKACS"
     gene            20060..20734
                     /locus_tag="ROE18_000284"
     CDS             20060..20734
                     /locus_tag="ROE18_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HDX3650507.1"
                     /translation="MHKTADILNRVYALLNITDDKEFCGIFKVKPNTLSTWRTRNTIP
                     YDLLMKISKEHNISLDAIFFDKMRIIDDILKLRYYTDAAAAAGYGAINSQLEYTEIAI
                     SKKFACEALGLPPLAKLDIIKVIGDSMEPFIHSGDVIAIDVSKNKLDLVKNGDIVVIN
                     LDGEIYCKKLLKQPFVNEIVLSSMNSFYKDIVVNIEHINNAEIIGVVCKAISIKTFEN
                     AIIKYE"
     gene            20734..>21395
                     /locus_tag="ROE18_000285"
     CDS             20734..>21395
                     /locus_tag="ROE18_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650508.1"
                     /translation="MLYFIIIILIATIGLFVYSGFRIKSKLIKIATSGTLTKQDLKEI
                     EAISKYYEISLMEAAKIHYGKAMITEEMILRLERPYRELYEQCKNFSTNKHEKISHYL
                     SSNNQDNYLEAINFILIAEESVSIALKSKNKDTAESRRKLALEMEQKIQERHPKAYGL
                     IIDTIQLLEDNYDVSLFENQCIKYYEEAGKLKTIKSKQKRIDCINDLIKEAEANPKFD
                     RK"
BASE COUNT         7532 a         3184 c         3379 g         7300 t
ORIGIN      
        1 tataaaaaac cacaaagagc aattagaaca aaaaaagcta tttttgaagg acttaaaaac
       61 cttgataaaa taaaactaaa cacaatcttt tccttatgga taagtccatc ttgctttttt
      121 gcctctagtg tctaaatgta caaacccagc ataaggatca ttaaaattat gttttatagc
      181 aatccctaaa cctctttcgc cataggtgtt taaaacatat tgatgaactt cttctgtttt
      241 aactccttta accacaaagt ccgctgcact tcctatagtg tgttggcttt taggggctcc
      301 accaatctct gcattatgct ctttgcagcg atatccacta tttataataa taggagcatt
      361 gtaatgttct ctgatttcac aaagaatgtc tataagctca tcacttggca cattttgagg
      421 caattcacat ttgccgcatt tacatttaaa ttcgctttct ttaaaataag ggttattttt
      481 cattttcact cctttaaatg tcgtaagttt agttaaaaag ctgacccaaa aactagaaaa
      541 attttgtgct aaaactcttt gaaaaaataa tttgcttgat taaaaaaaga actcatttta
      601 aaattgccgc taatttttaa aggatgaaaa atgcttaaaa gttttgaaaa tgagctttta
      661 gaactattaa aagattttaa agtaagaatg tatttaggcg agtttgaaga cacccaaaac
      721 atagcaagtt gtattaataa tttagatgct tcgcttttgc ttgattttga aggagaaagt
      781 tataaagatt tagaaaataa agtgggaact tggaaacttt atattttaac ccatacaaaa
      841 tcaaaagctc ctaaacacag aattgatgct aagcataaat tatttgatgc aatagaagct
      901 gttgataaag tgcttttaaa tgcagaacct agcaatggtt ttagaataga gcttaaagat
      961 cttaaaaagg tttacgaagg aataagcgat catggctatt taagcattta tgcaagaact
     1021 ttgcaaagta gctttttacc aaaagatgat tttttaagga tttaaaatgc tttttatcaa
     1081 taaagaaaat ttagtcgaag ttagcaatga taagcccata aaagtggcaa ttaagggtga
     1141 gtggaaaggg cataataatg gcaggtttaa ggttgatgat aaagatttaa actcaatgat
     1201 tgataatttt aatcaaaaaa agattgattt ggttattgac tatgagcatc aaagcttaaa
     1261 aaatgaaaaa gcacctgctg caggttggat taaagagctt tatttggaaa atgatgcctt
     1321 aatggctaag gctgagttta acgaagaggc taaaaaatat atagcaaata agcaataccg
     1381 ctatttatcc cctgtgtttg aatttaattc aaaagacaat aaaagtggag aactagtaag
     1441 agctaagctt cactcagtcg cactaactaa tacgccattt attgatgagc taggcgaact
     1501 cattgctaac aaaaataata ttcatcaaaa caaaggagag aaaatggatg aaaaaatcaa
     1561 agagctagaa tctcagatta tagctttaaa aaatgaaaat agttcactcg ctttacaaaa
     1621 tgaagcttta aaaaagcaaa acgaagaaag cgttaaaaac ttagcaagct ctttagttga
     1681 taatgcttta aatagcggaa aaattgctaa ttcccaaaaa gaatgggcgc taatgtatgc
     1741 ttgtaaggat ttagaaggct ttaaaagctt tttagatacc aagaatgatc aagtgcaagt
     1801 tccaaaaaat aatgtttttg caaataaaaa cacagcaaaa actaatgagt ttgatgttgt
     1861 gaaaatgatg ttaggggatt aaaaatggct aaagctaaaa aagaaaccca aaacctagaa
     1921 aatgaagact tggaaactgg agacttacct aaagctttgt ctttagaaga tgagaaccta
     1981 gctaatgaag aagctgtgag tgaaaatgaa accgctaagg aatttataaa tgaagaagga
     2041 gaagaaatgc catcaaagat cacaccaaaa agcttaagca atgatccttt aattgctatg
     2101 ccaaaaagcc ttgaaagttt tatcaataaa gatttgtttt caattaatgc gaaaatagat
     2161 cttgaaacta atgaaagctt agctcttgga acgcttttaa tcagcgaaga ttttggagaa
     2221 agctttaaaa aatgtccaaa tgaagatatt agtgcaaaag aaaatgttaa attagcaatg
     2281 cttaaagatc acgctcttag ttctggagtt tatggggttt tattagcagg agaaatcaat
     2341 ttaaaaggcg ttcatgtaag tgcggttaaa aaggctttta tgcaaaattt aattattaat
     2401 actaaggagt aaaaatggat ttagagcaac ttttggaact tttttcaagt acaaaaataa
     2461 ctgaagttat taatcaaacc aaagcttcac ctcgctttgt aagtgatact ttttttaagg
     2521 ataaaatccc aagtttagag agcaccgtaa gggttgaaat tataaaaggt gctggaattg
     2581 ttttaaatag catttcagat aatggggaac attctttaga aaatactaaa gacgcttata
     2641 ttttaaatat acctttacca cgctttgcat tagcaaaaag aatcagtgcg agtgagatta
     2701 attctttaag gtctttagca ttgcaagaag ctcaggctaa aagcttaagt ggagctcttg
     2761 gggttttggt taaagaaatg aaagaaagct ttaacactac gcttgaatat atggcaaatg
     2821 gtgctttatt tggcaagatt ttagatggca aaggaaatgt gctttttgat tttggaagtg
     2881 caagtaagaa agctgttagt gttaaaaaag atgggagtgt gactttagcc agcgtttgtg
     2941 atgcgattga ttcagcaatt attgatgaat ttggaacaag tgctgattat gaagtgcttt
     3001 gtggaaatga actttttgcg gctatttcta acttggcatt aagcgaagat ctttataaaa
     3061 atcatcttgc aagtagggat gagaaagata agtccttaat tttatatggc accaaatatc
     3121 gccgttatag tgcaaaatat aaaaatacaa atggaaaaag cgttgaattt ttaaaaggca
     3181 ctgagggtat ggttgtgcca aaggataatt ctaatcgcat ttattataca agagcaaatc
     3241 atactgatgc tttaggaaaa gcaccaagtt taatgtttgt ttctaagcct gagattttac
     3301 ctcgtggggc tggaattgaa attgtaggcg aaatgagagc catgccagtt tgcaccagac
     3361 caaatggact tattaagctt gttttagaat aaaacgcaca attttagctt taaaggcaaa
     3421 aaatgctttt aaagctaaaa agatattaga aaaagatttt aaacgatttt aaccatattt
     3481 taaccatatt aaaaaaggtt ttttaaatga attatcaaga cattttagaa gaaaagctta
     3541 tcacagaaac taaaacgcat ttttttatga tagatgaaaa ggatttaatc aaagaattaa
     3601 gcgttcatgc catagcagag cttagcgatt taaatgctga tggggtttgt gataaagaag
     3661 tgattgatga tgctattaat gatgcacaaa gttatattgc aagttttata aagataccta
     3721 aaaacccaac tcctctttta aaagatatct gtgtaaagct tacaattatg gaattaaaac
     3781 gccgaaatga ttttccaaaa gaaagcttag aagagattag agagtgggct aatgatttgc
     3841 ttttaaaaat ggcaaataaa aaaattccaa ctgaaattag tgaagatgat tttcttccac
     3901 aaaacaaagt tagagcgttt aaaattaaaa gaaaaagaat ggatttaagg agattaaatg
     3961 gctaaaaatt taacttccac cacaaagcct aagatggcaa aggtcgggtg tggccttcag
     4021 gtgggtgcag agagtgaaac tcctgctcgt aaggataaat ttacttcatc cgcgaagtct
     4081 caaaacaact taaaagattt agcaaaagaa ctttatattg caggttttga tatatttaaa
     4141 attgcaaaaa ttttaaaccg caatgaaaaa acgattagaa actacaaagc caaagatggc
     4201 gattgggata agcaaaaagc taatctttta acttcaaaaa taaaagataa agaaagtgcc
     4261 tcattatatg aaagttttac tgagcaaatg ttttgtgcga ttgaaaatat aaatactgat
     4321 gaaaaaatga atgcagaaaa gaaaactgaa gccattgcaa ggataggcga tagcttttca
     4381 aaaatgagaa aggttgcaag attagaagat ccaagtagct atcgtttaaa tgttgctaaa
     4441 aaagtggttg aaattatcat aagtcattta aaaaatgata aagattgcgt agcaaaactt
     4501 gtatcacttt tagaaagtgg agtgatagaa aaagaaattt tagcaatgga tatttaatgc
     4561 ttttttccaa agaagaactc gatgagtttt taatctcaaa cgaacaaaag cacgaaaaca
     4621 ctccaaatga actaaaaggt gctatgcaaa gaaaagactt tttagaatgg atggatgagc
     4681 taaaaaatga attaaaaact caatttttgc atgaaagcca tttagatcct actttaaaag
     4741 aagaaagaat taaaagagcg agtgtggatt ttgattattt tgcaagaact tattttccgc
     4801 attattttac cattaaagga gaatgtggct tacatttgca cttaaatgaa gtttttacaa
     4861 aaatcgcact taaaaaagaa agcaaaggtg aaaaacacgc catagctgca ccaagagctc
     4921 atggtaaatc cacctacact tcacaactct ttcctttgtg gtgcttagtt tttaattata
     4981 aaagctttat agtagagatt tcagatgcgg tcgaacttat ggaaggaatg cttgaagcta
     5041 ttaaagcaga gcttgaagat aatccgcatt taaagcttga ttttcccgaa gtagtaggaa
     5101 ttggtaagac ttggcgcgta ggagagtttg taagtaataa tggcgtaaag attaaagcct
     5161 ttggcagtgg taaaagactg cgtggggtta gatatggggt taaaagacct gatttagtta
     5221 ttttagatga tttagaaaat gatacaaatg tcagaagtaa agatcaaagg gataaattag
     5281 aagattgggt ggatgaagcg gttttaaact tagggagtgc ggatggaagc ttagatgtgc
     5341 tttatattgg aaccatttta cataatgata gcgtgttatc tagaaaatta aagctcggtt
     5401 tttggaatcc taaagtcttc cgttccatcg aagagtttcc acaaaggctt gatttatggg
     5461 atgaatacgc catgctttat agaaatgctg attttaatac cgctcatcaa ttttatttaa
     5521 aaaataaagt tttaatggat aaaggggcaa aagttctttg gaaagaagcc aaaagcttag
     5581 aagatttaat gaagttaagg gctgaaaatc taaaagcttt taataaagag caactcaata
     5641 atccaagaag tgaaaatcaa atctttagcc ttgatggcat taatttttat gatgatttac
     5701 ccgccattaa tcagtattat atgtatattg acccagcagg agaaaaagca aaaagtgact
     5761 ttactgcgat taccattatt ggcaaaggtg caaagggttt ttatgtagca gaaagcatcg
     5821 taaaaatctt aaaagcacaa agcattataa aaaccatttt taatcttcaa aagatttata
     5881 aatgtcgctt gattgaaatt gaaactaatg gcggtcaatt tttcttaaaa aaatggttac
     5941 aagaaaaaag cttagaaagt ggagtttttt tgcctttgcg tggtaaaaat aatagcgtta
     6001 gcaagtttga acgcattgag agtttaagcc ttgcttttga aaatgaagag ctttttttac
     6061 ataaaagcca aactatgctt ataaatcaac ttttagaatt tccagaaggg aaaaatgatg
     6121 atgcacctga tagcttagca ggagcatttt tattagcaag aactaaaagt agcattaaaa
     6181 gaagaaagca tcattttaac tctgtttcaa gaataaggcg tttttaaagg aaaaatatga
     6241 aaaaagaaat caaatccaaa agagaagtga tattaaaaaa caatagtctt ataaacactc
     6301 ttataaactc aagctattta aatgtgctta aaatcagcga gaacgatcaa aaaatgattt
     6361 ttaaagatct aagctttact caagctcatc aatcacgaag gagtgtgatt ttagcaaaag
     6421 agcttcaaat cgtttgtgaa aacgaaaaaa taaaagaaag ctttgagtat cttttcaatc
     6481 ctgatttatt aagtcaaatc ttagaaacct atctttatgg gcttaatgta tttgaagtta
     6541 attacaagtt aaaagatggt ttttactatc caatcttaaa acaaagagat tttagaaatt
     6601 ttggctttaa tgaaaatgat gagttagttt ataatggcaa tggttgtgaa gaaattgtgg
     6661 aagataaaaa agcaatttat ggactttttg gctctaattt tttatttaaa aatggcgatg
     6721 ccttattaac aaagctttat tttccagtaa agcttaaaaa tgcaagttta aagttttgga
     6781 tggagttttt agaaagattt ggttctcctt gggcagttgc aaaaacagat agcgatcctg
     6841 atgcactagc ttctgaaatt catcaaatgt taaatggcga tagtgcggtc attgataaag
     6901 aagaagagct tgatttaatc cagccaaagg ctaaggcaaa ttataatgaa ataatagatt
     6961 acttagataa tcaaataaga agcgtggttt taggagctaa tttaagttct caagtgagtg
     7021 ggggttcttt agcagcggct gagtcacata atcaaataag aaaagattta gccgcccaag
     7081 atggacaaat cgttcttttt attttaaatc gtgccattaa gtttttcaaa gaaatcaatc
     7141 attttaaaga tgaactctat gtgcagtttt ttagcgaagc agaaccaaaa agtgagcttt
     7201 gcgaaaggga tttaaaactt tttaacatgg gcttttgctt tgatgaagaa tacattaaaa
     7261 gcacttataa tgtagagggt gagcttataa gagagacttt agaaaaaaaa gactttaaag
     7321 atttagaaaa tgataaaaaa gtctttgaaa acaaagtaaa gttagagagc tttgaagaag
     7381 attttattga caaaggatta gaacaaaaag aatacttaaa agtcgatgag agcatgtcaa
     7441 agttttttca agagcaattt gaaagcattg taaaagattg taaagatttt aacgaggcac
     7501 tcaataaact taaagaaaat ttttctagtt tagagcaaag cgagtttgaa aaacatcttt
     7561 ttatagcttt aaataattcg agtattttag gatacttgga ggattaaaat gacaggtgca
     7621 aaaataggat ttttttcaga acctactaaa gctgttgatt ttttaaaaaa taaaaagcca
     7681 gagcttagtt ttgattatga tgaactttca tattcaaccc ataaaaaagt ctttactatt
     7741 gctaagctta tggatgaaag cttgttaaaa gatatgcaag atactttagt aaatgctatt
     7801 aaaaatgggg ataaatttag cacttggagt aagattgcag aggagaaatt aaaagctaag
     7861 ggttggtggg gttcaaagga agtcataaac cctaaaacag gagaagttaa aaaaactcat
     7921 tttaatagtg caagattaaa aaaaatcttt gaggaaaact caagaaaagc taaagctaaa
     7981 gctatctatg aaaatcaaat gaaaagcact aaaccttatt ttaaatactg cacccaaaaa
     8041 gattctttgg ttagggacaa acacagagcc tttgatggca tagttttaca taaagatgat
     8101 cctttttgga atagtcatta tccgcatgta actatgcatg attatggttg taggtgttat
     8161 gttttagaag taggtgaaag tgaagttaaa ggcctaaaaa taccaccatc aaatgccaaa
     8221 gaaagcgaat ttaatggctt taatgatgaa gagcttttag atgagcttta taaacaaaaa
     8281 aacactgaag tcattcaaaa ctttataaag cttgatatgt taagtgcagc ggctaaaaaa
     8341 acaaaagaag ttaaaagctt cactcatcaa aaagaactgt acacttggca aaaaagctta
     8401 gatgatatgg tggatgaagt catcattaaa gataatcaaa aatatcctat caattttata
     8461 caagtaggta aaatggataa aagcaccaaa gagtttttag aaaaacttaa taaaaaagac
     8521 ttagaagact tatactttgc actgagcaaa aacaatcttt tacacgcaag tcctaaaaga
     8581 aaggcaagtt ataatcaggc tttaagtgtg gatgaaatca agcaaattgt taaagtttta
     8641 gatgaagcaa aagaagttta ttgggataat gcaaataatt ctttattgta tttctttaaa
     8701 gataaaaaag atgctagtcg tatcaataaa attgtaatta cccctgatta taagctaaag
     8761 aagtttggta aaaccaatgc aatagttaca ttaggaaaag tagaagcgat taataaagat
     8821 aataagacat atattaagat tagataaggc ggtgagactt gcactcacaa tacatacccc
     8881 aattaatttg gactatccta ctactacatt ttaggtatca accttatcta attaagataa
     8941 ttttagcttg atgaaactaa aaaggagttt aaatggtttt agctttagga gaatttgagt
     9001 ttaaagcttt aaattttgat aatttagaaa gaagcttaga atataacata caaagtcaaa
     9061 ataggcttaa taatcataat gctttatttg caagttctaa agaaagcgaa aagattaaaa
     9121 tacaaggcaa aactttacct ttaaaagggg atagaaatac ttatttagat aagcttgaga
     9181 atatggcaaa agaacaaaga tcttttatct taacaggagc taatggaaag tattatggta
     9241 aatttgtgat tttatcctta aatgaaaaca gaagtgcatt tgtagatgga agtggctttg
     9301 tagcacaaag ctttagcata gatttagaaa gggattttga tgagtaagat ttacatagct
     9361 aaaaacaacg agaggcttga tagtatagtc tataagcatt atgggacact tttgtatttt
     9421 aatcaagttt tattagccaa tccaagatta gaacctcttt taaaaacagg ggataaagtg
     9481 attttaccta gtattaaaat caaagaaagc aaggaaaagg ctttatggta agaaaaccta
     9541 agtttaaact tattgccaaa ggtgaggata tcacagaaaa actttctaaa aatcttatta
     9601 gcattagtta tgaagataaa gaaaaagctg aaagtgatga gataagttta agtgtttttg
     9661 ggctttattc caagccactt tttggggata gtttagagct ttggcttggc tttgaaaagc
     9721 tttataaatg tggaagcttt agtgtgaatg tagtgagtaa aaactatact tcaaatacta
     9781 ctgaagttag agcaagtgct attaatttta gtggaaaagg cagcgttaat ataaaagaga
     9841 aaaagacaag aagctttgaa aacactactc tttttaccat agcaagaaaa atcgcaaatg
     9901 aaaacaatct aaaaatcaaa acaagtggag aggatcaaaa tatagtaagt attttacaaa
     9961 ataatcaaag taatttagaa ttcttatata gtatatgctt tgattatggt tttatttgct
    10021 gtgtaaaaga aaatacttta atcattactc caaaagatgg taagattggc gataatgctg
    10081 ctaatatcac aagcaagaat gaaaatttac ccttatttga aatagcttta aaagaatgta
    10141 tttcattaga aatttcagaa agtgctagaa atgaatatag tgccgtaata gcagaatggc
    10201 aagatataaa tgaggcaaag ataaaaagca taaaagtagg aagtggggag aatatatata
    10261 aaatgcaaat ctcacaacca aaaaatgata atgaagcttt taaaaaagca caagcaaaac
    10321 tcaatgagct tcaaaaaggt ggattaaatg gaagatgtga gcttattggg cgtgaaataa
    10381 gagcaggtgg aaaacttaag attaaagata ttaatatgga tcattatgaa tttagtatta
    10441 aaagcgtgag tcatagtttt aatgaccaag cttatataat tagcgtggag tttgagagct
    10501 aaaacaaact tggttctaaa ttttctctca attctttagt gattaaatac accgcattta
    10561 aacttaaatc gtatttttta gcacattcca cacttgcatt tttagtgctt attccctgtt
    10621 ttatgagtgt tttaaaatcc tgttttaatt cttcatctct aaataaggtt ttatagcttg
    10681 gtatgtaaat atttgcaccg ccaaattctt ttaagatttc tcgtttgtcg ttatttttca
    10741 caaaatcaat aaaatattca aagtattcgt tattgctaag caatgctagt cctatttgag
    10801 tgtttttgca aattatagca aaaaagctaa attttattta gtagggtata attttaaaaa
    10861 ataaaaagga gaataaatga aaaaaataat aagcgtttta atacttgctt taagcttatt
    10921 aaatgctaaa agttttgaag aaagcaaaaa agaattagta aaattttata atgatctagg
    10981 gagctcttac tggtatgatt tttattgtca agcacctttt aaggttaata aaaaaggaaa
    11041 atatattagt tttgaagtga ttaaaagtga tttatatgct cctagaaacg aatacaccaa
    11101 aaaaggaaaa attaaccaaa gaatcaaacg catagaatgg gagcatatta tgcccgccca
    11161 aaactttgga aagcatttac cttgctggaa agaaggtggc agaaaagctt gtaaaaatga
    11221 tccaactttt gcaaaaatgg aagccgataa acaaaaccta gtcccagcca taggagagat
    11281 aaatggggat agaagcaatt ttagatatgc tgaggctcct actaatttaa aatatactca
    11341 atatggaaat tgtaaggttt atactgattt taaagcaaaa agattttatc ctgcaaatta
    11401 ttctaaaggc tggattgcaa gaagctattt atatatgagc aaaacttata atatcagatt
    11461 atccgaccaa gaaagaaaac ttatggaggc ttgggataaa caatacccta tggatgagaa
    11521 agaaaaaaga attagagcat tactctaatt ctttgcaaac tttagccaca atttcatcta
    11581 tatcaataac caagctttta tcttcttcat caaaactctc atcaagtttt tctctgatat
    11641 tacaaaccac attaagcaaa atcccaaaat ctttatcagt tttaatctga tgagtgattc
    11701 cattatgcat tatttcaagg cttgttcttt ttgcggcaaa ggcaatttgt gagtgttttt
    11761 ctatgcctaa ggttaaaaaa aactctgcat cgtaagaatg tatttctaaa atcattttaa
    11821 tctccttttg ttttgatgag acaacattag cttcgtttgg cttaatgtgt gctgttgttt
    11881 tctaaatttt taagccctag gataacttta ttagcatctt ctatacttaa ataccaaaga
    11941 tgcaaaggtc gcttttttac aatattatta ataaactctc ttaaagccca ctgagtagga
    12001 tttttagcat ttttactcca aatggcttgt atcatattaa gttgcttttt tgtagccctt
    12061 ccgcttttag tgttttcttt tttaaaatac cttgcttttt tggtattttg cttttttaaa
    12121 aacttttcat catagcccaa agttatagca aagtccctaa gttcatctat gcttaaatcc
    12181 ttacttgaag ctttgccata tctttgattt aaaacccagc gatagctttc atcatcgctt
    12241 aaattagcat cttttcttaa agtatgaatg attttaatta agtgcttttt taaagtgttt
    12301 tgagtattca ttttttagcc tttaaaattt gctctagttt tgaagtgaat ttatcaatat
    12361 ttgcattata aagcttattt tgattctttt tgtattctaa atagttttgc tcgtaatctt
    12421 tatttatttt agtttggcta ggaatttgag ttttaataac agggcttatt tcaattttat
    12481 tatcaaaaat aattttatct tggtttttaa acatatattc aactagctta ttataaaact
    12541 ctcctacatt cagtggtttt ctttgctcat cacaaagctc tttattagca ttaataaaat
    12601 aaagattatc cccacaatca acatgcttta aaacaggctt tcctaactca tcataaacaa
    12661 tgttaccatc ataatatcta agtgcaaaag aatatgagaa atctcctttt tttgtttgaa
    12721 aaataaaacg atttgaaaat gaaatgaaaa gccattctaa aaaagactct atatttttgt
    12781 accttaagtt taaatcaagc tctgcaaagg cacacacaag agaaagtttt tcatagcttg
    12841 taccaacaaa ttgctttttt aacatggtta aatcatagta ttttttaaag cctaatatat
    12901 cttttggtgt tttggcttta aaataaagtt tttctataac cactgcttga acttcactaa
    12961 taccaaaaag ctcttttagt gcctcttttg cattatccat taaaactcct cttctagcca
    13021 agaagctaaa gctttttgct tatctttgtt tttgtatttg tttgctaact ttggaagcca
    13081 agttgaatta agtgctcttt tccagcattt taaaggcttt ttattagcca tgagccacct
    13141 tccatcgtct tgcttatagt aatttataaa gctatctgct ataaaataag ggatagagca
    13201 agagttttta gcattaaact catcaatggc tttaattaaa tcttctttgc ttggagggtt
    13261 aaatttcata actcatcccc aaataagctt aattctttgt cgttgctgtc tttattgtca
    13321 gcttttaaac ttttccaaac aaaagtgcga ccattttccc cgccaagctc actttcccaa
    13381 aaaacacctt taaatttctc taaagtattc cttgaaaaat tatcactcct acttacatca
    13441 agagccgata aaatctcact tgtgcttagg cttttttcgt ttaaaagctt taaaacttta
    13501 tctataaaag cttcttcttt atcgctgatt ttagcgtttt gcaagtcggt gtttttaata
    13561 tttagagttt ttgtattgat aaaaaaggct tgatctttaa ttcctgccct ttctttttgc
    13621 acactaagca atacttcaaa gccttgttct aagttagcca ctttttgtaa aaaatacatg
    13681 caatcacttg agtttctaat atgatttgag cctttaaaag ctctgccatc ttttgtagaa
    13741 tggtgtaaaa ccataatggt tgccccacat tctcttaaat tcatgagtaa agacattaaa
    13801 gacatcattt tagtatcatt atcaatatct gcaaaattgc gtaaagaatc aagtacaaat
    13861 aaaacccctt catagcttcc tgctacgcct ttgccttcaa tcatttctaa aagttcataa
    13921 gctgaagttt ttaagcttga tctgtgaata taagtgaatt tgctttcatt taaaataagt
    13981 tcaccaaaac ctctttcatt taaaacattt aaaggattat ccatgtcaac ataaacgatg
    14041 cttttaaccc ttgcatcttt gcaaagtgtt ttagaaatag cagcacttaa ataacttttt
    14101 ccactgccgc catttgcgta aataatggtt attgctttct taactaaaaa atcagggatt
    14161 aaaaactcta atttctcgtt taaatcttta ttttttaact taaactcatt taaaaaatcc
    14221 aaattcatct tttttccttg ctaaaactta atcaagccca ttaaatcaat ggactttgtt
    14281 aaattttttg gcttttttaa catatttcat ttttatgtta aaatttttag tattttttaa
    14341 catttcaaaa gttcaggatt ctcgtggata ttgccgatga tttcggtatc atatccttca
    14401 tctttaacta aataaattaa agagcctatg taatctctac ttttactctc aagataaaaa
    14461 gtcccttctt tatgaatgcc aacttttgcc aaaaagcaat cgtatggact tttagtttta
    14521 acgatatccc cttcataaat ctttttgcca tttttatcat aaatcccagt ccatagctcg
    14581 atttctaaat cattgccatt tcctataaac atatctgtaa tatccgcagt atttgcgtaa
    14641 aatcttgaaa ttcgcccagc aatcactctt tcgttatcta ttttaattaa agtcggctct
    14701 ttctttaaaa actcttcttt agttttatcc caaatcctaa aatcaaaatc ttgtagtttc
    14761 atttgttacc tccatttata ctttttatag ttttttgcca ttcctcatcg cttttaaact
    14821 cattattaag ttcttttaaa agtttaagtg cttcatcatt agacaaatta gaaagaatag
    14881 ctcttattct ttctaatggc ttgatatcct tatggataat tccaaagaat tcctcttgct
    14941 cttttgtgct taaatcttca aaaagttcag ccaaatcatg agcatctata tcttctaaat
    15001 cactcgcatc tatgcttaca ttgacataca ttttttatcc ttttgtttta aattaagttt
    15061 taaaaactta atcaaatccg ccttagcgga cttgttaaat ttttctcttt ctaagcctaa
    15121 ttttttgttt tgcacccatt ttcttttttc ttttaaagct ttgttttttt agtttaggct
    15181 tatttttaaa atcaagttct aaaaagccat taaaatgagc ggtttttgtt ttaaaaacac
    15241 tatttaaaag tttaaaagcc gctaaggaaa gctctctcat ttttcaatct ccaagctttc
    15301 aatctttggc tctattctaa aattatcctt tacaactctt ttaagtccaa gctttactaa
    15361 agtagtatca tcaagctcta caatggcatc tttattaagt tcttctttat aagtaatgca
    15421 atcattgagt ccatagcttt ttaaagcttt gattaaattg tcaaattttt cttttactct
    15481 tggtaaagaa acgcttttac ttaagcgata gccaatcttg ccaaaggtaa attctttaga
    15541 tcttttttcg gcaaattcat gcttgttatt ttcacaaaaa gtagtgatac attgctctat
    15601 gtatccaagc tcatcactta aaaccttaat ctctcctgca cgagcttctt taatctcatt
    15661 gcaagctaaa gttacttctc cattaatctt ttctattttt acactaagtt ctgccacttt
    15721 tttaagtgct aaattaacat cttcaaaact atttatttgc atttaaatct cctttaattt
    15781 atatttttta atttgataat cccaaagaat tacgccatat cttaaaagca ctgcgtgttt
    15841 agttcttttc ttgattatcc ttaagccctt attgtaaggg caactccaaa actagctctt
    15901 taatgccaag ctttttagca agtgctaatt cttcttgcat accttgtgaa tattttgcat
    15961 ctttgtgttt gctaagataa atataatcac acgcttttaa aagctctaat cccatttgta
    16021 aagctttgtc tctgtgcttg ttttcatcca aataactaaa ttgtagtatg ggtgaaacag
    16081 gcacaaaacc ttcacattca cgcataattt ttaagcattc ttgctgagct atgctaatag
    16141 cttgtgcttt tctttgactt tctcttacta ctaaagcttt ataaggagag gctacataaa
    16201 ctaatgccat tgttaatcct ttctaataaa tttaagtttt aaaaaactta atcaaagtgc
    16261 tttaatttaa gcacttttgt taagcttttt acccaaatga aaacgaatga ttttttttgc
    16321 aatataatca ggataaattc cttttaaaac atctacaaac actccacttt ctttataaat
    16381 aatgcttaca ccttttatct caaaaagcga agcactataa tcagctttct cacctttaat
    16441 cattggtatc attttttctc tccttgtatt aagttttctt tctttacttt ttcttttttg
    16501 attaagtcaa tcgtttcaaa gatagccatc cacttgtctt tatttttagg actctttaac
    16561 tttctaagag cttcagtata gatttgatga acgcgtgtca cgctaagatt aagttcttta
    16621 gctatctctt caaaactcat ttttagccca gcattaaaaa tgatgcggca gcttctatgt
    16681 gtttaagctc aaccgctttt ccatctgcaa attcacaagc tctttttaaa agcttctcac
    16741 tttttctaaa gttgccacga gcgaggttaa aaactaaatc aatagccttt ttctcctcca
    16801 catcaaaatg attacaaagt gtttttaagt cttcattttt taaaccttct ttgttttgat
    16861 aacaaagtcc ttttaattcc cattttgcac caattctaga gcttagttgt ccgtactcgt
    16921 tgtaatcatt tctgccaatg cctgtaagat tgtttttaag ttttctagta cctactaaga
    16981 ttaaagcagt atttgaaaaa tcatatatgc gtcttaagca ctccaaagca cgaaacggca
    17041 aatgctcact ctcatctata attaaaacct ttgaagttct tgctaactcg ctagcaatgc
    17101 ctctaatctt atcatccaaa gaacctttaa aacacacatt gagtttattt tcaagcccca
    17161 ccaaaagcat tcttttgctt gtctcagttg ttgcttcaaa aagcaccact cttgttccat
    17221 ttttagcggc atattcttta atggctctgc tttttccagt ccccgcttcg ccaatgatta
    17281 ctcccatttc gcgattgctc atggcacttt caatggttac attaatcgcc tttgcatctt
    17341 tagtggcaat aaaaggtgtt tgaagctctt tcacgctttt ttcttccaca aagcttttaa
    17401 tgtatttttc aagtaaaggc tctactttta aagcgtattt atagctactt ccttctttca
    17461 tatagcccac catatagctt ttattaatcc ctaaacgatc ggagagattg ttttgagaga
    17521 tgttttgggt gcttaaaaac tttttagtaa gttctactaa ttgcattttt tatccttttg
    17581 tttttttatg agtaaaaact ctttaaaact tgaattaatc aagctttaaa caatttttaa
    17641 ccagcaaaat atttcttttc gacaaaagct tccatgtcaa actcgctttc atcgttattt
    17701 atttcttttt tagcgtttaa aataagctca tccgcattag cattgttttt aatctcttct
    17761 aattctcttt gagtttttaa ggcttctttt gcaagggatt tttgatgcac ctctttagct
    17821 tctacgagtg agttttcaaa agcactttgt aaatcttgta agtcttgttt aatattaagt
    17881 ttagtaaagg cggcaatctc atctttttta agcacttctt taatcgcttt aacttcactt
    17941 tcataacctt ttttaagcat tttatagctt tctttactaa gtttagcgat actttcatca
    18001 agtgctagac aaagaaagtt tccgcttaaa tcataaatga aaagttcttt aatattatcg
    18061 atattttgca cacatttaac ccttgtgcca acacttggca ttaaagcact tttataaact
    18121 ctactttcaa agttaatgcc ttttttgccc acaaccctaa gttctttatt tccagcgtta
    18181 aacaaaaatt cttcataaga tatttttaca atagatctat cgcatgagtt ccaaagttca
    18241 agtggagttt taacgccttt tttgcggcga actttgctca tgttccactt gatcacttca
    18301 gcttccaaaa gctcacaagc ttcgctaaag gtgtgaagga gtttttgatt agttttttta
    18361 gcaaagccgt attcatcttt agcttttctt tctttcttag gagttttttg ctctatcatt
    18421 tctcttttag ctaagctatt tccaatgtga ccgtgcattt gagataatct agctctttga
    18481 agtgttccaa aacgcctttc aactaaagct ttttgctctc ctgcgtaagc aatagctgca
    18541 tcatagctta tattaagact atcaagtaag ctttgaaaat cttttgaaag ataatcttta
    18601 ccattatccc ctttaatcat atcgggctta ccaaacttat ctatggcttt ccataaaagt
    18661 ctagttaggc ttaaagagtt tgattttcct actaaggtag ctactcccat gccactaaag
    18721 acatcaacga cacttaagat gtgtgggcgg aaaggctcta gtgtttcatc atctcttact
    18781 ataaaatcag ctggagagct atcgatttgc caacacatgt ttttcatatc ataaagctct
    18841 ctttgattgc cttgtgcagg gagaaactta ctttttgctt tatctaagcc ttgtgtgata
    18901 atacaatgct ccaaaggctt gtctttataa tagtttttaa tgaaattttg taaggttttt
    18961 acactaaaga gtggctttac ttttcccaaa tcaaaaccta taaagtcata attttcttta
    19021 atggctgctt ccttgtgaat ttgccaccaa agctcagtga aattaaatcc acctgcccca
    19081 aaggtgcgat attctcttaa agcgtattct tgcatccaag cactaagctt ggttttatct
    19141 ttgcggtgaa gtccgcgagt gtcgataaga cctagaatgc cattttcttt atatgctttg
    19201 cgaattctaa aaatttctat tttagaaata ccgcataatt ccaaagctct tttctgctta
    19261 agtcctcctt caatatattt ttctacttgc tttaaagact taagcttttc tctagcattg
    19321 tttttaattt catcgcttaa attttcaaac tttatattta aaacagccaa atcattgtct
    19381 atttttggct ctgttaaatt taaattacta gtttttaaac tattatttgt agtttttaaa
    19441 ttatcggtag taataatttc gctcaattta actttttgca ttttttcatt aaaaatcaaa
    19501 gtatttttac tgattaattc ttgattaaaa gcggttaaaa gctcatcttt gcttatttta
    19561 aatagtagtt ttttaccacc cctgccacct ttttcattat ccacttttag ccactcatat
    19621 ttatttgagt ttctacttac tgcaagcctc aaagctcctg tgcttacatt aaaagtttgt
    19681 gcggcttctt tggtttctaa gaagtaactc atgaacaagc cttaggcatt tcatcaatga
    19741 ttttaagttc taaaagtttt tcataaactg ctctagtgtt tttcttcgct ttgtattttc
    19801 ctaaatattc accttttata acgcgaatag tacttaaata gtcaagattg tgtttttgtg
    19861 cgaatttttt tatattaata ccattatctt cgaagtattg ttttaacatt ttttttcctt
    19921 taatttgata tttttatatc aaattgagtt attttaagat acaatttgct attaaaatat
    19981 caaattataa gacaaaatgc gaattaagtc aagatatttt atcgcatttt gtgaattttt
    20041 taataaaaga aggcttataa tgcataaaac agcagacatt ttgaatagag tttatgctct
    20101 gttaaatatc accgatgata aagaattttg tggaattttt aaagtaaaac ccaatacatt
    20161 aagcacttgg agaactagaa ataccattcc ctacgattta ttaatgaaaa tttcaaaaga
    20221 acacaatatt tcacttgatg ctatcttttt tgacaaaatg cgaattatag atgatatttt
    20281 gaaattaaga tattatacag atgcggcagc cgccgctgga tatggtgcta taaatagtca
    20341 attagaatat actgagatag caataagtaa aaaatttgcc tgcgaagcct taggattacc
    20401 gcctttagct aaactcgata ttattaaagt tataggagat agtatggagc cttttatcca
    20461 tagtggagat gttatagcta ttgatgtgag caaaaataaa cttgaccttg ttaaaaatgg
    20521 agatattgtg gttatcaacc ttgatggcga aatttactgt aaaaagcttt taaaacaacc
    20581 atttgtaaat gaaattgtat taagttctat gaactctttt tacaaagata ttgttgttaa
    20641 tattgagcat attaacaacg ctgaaattat aggcgttgtt tgtaaggcaa tatcaattaa
    20701 aacttttgaa aatgctatta taaagtacga gtgatgttat attttattat tataatattg
    20761 attgcaacaa ttggtttatt tgtttattct ggttttagaa taaaatcaaa attaataaaa
    20821 atagcaacaa gcggcactct tactaaacaa gatttaaaag aaatagaagc aatatctaaa
    20881 tattatgaaa tttctttaat ggaagcagct aaaattcatt atggtaaagc catgattaca
    20941 gaagaaatga ttttaagatt agaaagacct tatcgagaat tatatgagca gtgtaaaaat
    21001 ttttctacaa ataaacatga aaaaatttca cattatctct cttcaaataa tcaagataat
    21061 tatttagaag caataaattt tatcttaatc gcagaagaaa gtgttagcat agctttaaaa
    21121 tcaaaaaata aagatactgc agaaagcaga agaaaacttg cattagaaat ggaacaaaaa
    21181 atacaggaaa gacatcccaa agcctatggc ttaattatag atacaattca acttttggaa
    21241 gataattatg atgtaagtct ttttgaaaat caatgtatta agtattatga agaagctggg
    21301 aaattaaaaa ctattaaatc caaacaaaaa agaattgatt gtataaatga tttaataaaa
    21361 gaagctgagg caaatcctaa atttgataga aaatt
//
LOCUS       DAPOLW010000010        20860 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.010, whole genome shotgun sequence.
ACCESSION   DAPOLW010000010 DAPOLW010000000
VERSION     DAPOLW010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20860)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20860)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20860
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.010"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            96..824
                     /locus_tag="ROE18_000286"
     CDS             96..824
                     /locus_tag="ROE18_000286"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HDX3650509.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQARISILYDKGGNLGELFE
                     KSDVIIDFSSPSGTHELLNYARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLRNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
     gene            826..2163
                     /locus_tag="ROE18_000287"
     CDS             826..2163
                     /locus_tag="ROE18_000287"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDX3650510.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYVVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNAEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(2166..3551)
                     /gene="fliI"
                     /locus_tag="ROE18_000288"
     CDS             complement(2166..3551)
                     /gene="fliI"
                     /locus_tag="ROE18_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HDX3650511.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEATKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPINIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDTPNTPLPPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(3551..4123)
                     /gene="folE"
                     /locus_tag="ROE18_000289"
     CDS             complement(3551..4123)
                     /gene="folE"
                     /locus_tag="ROE18_000289"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HDX3650512.1"
                     /translation="MQKKFEDCVKTMLEIIGENPNREGLIKTPNRVFKAYEFLTSGYT
                     QNVKEILNDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKI
                     PRLVEVFARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGVQKANSTTT
                     TSALRGIFLKNEKTREEFFSLINSAKQVRF"
     gene            4266..5600
                     /locus_tag="ROE18_000290"
     CDS             4266..5600
                     /locus_tag="ROE18_000290"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HDX3650513.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RPGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKENKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLEGYEKLIPEYQTPKVSKKEIDEKKDELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFIPKTEKSEKVSKKEKEDK"
     gene            5600..6184
                     /gene="clpP"
                     /locus_tag="ROE18_000291"
     CDS             5600..6184
                     /gene="clpP"
                     /locus_tag="ROE18_000291"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HDX3650514.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            6220..6747
                     /locus_tag="ROE18_000292"
     CDS             6220..6747
                     /locus_tag="ROE18_000292"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HDX3650515.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKF
                     DKEFKKKKKNHKKEK"
     gene            6744..8249
                     /locus_tag="ROE18_000293"
     CDS             6744..8249
                     /locus_tag="ROE18_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HDX3650516.1"
                     /translation="MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSTKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNISKTHILEALSFRARN"
     gene            8251..8949
                     /locus_tag="ROE18_000294"
     CDS             8251..8949
                     /locus_tag="ROE18_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HDX3650517.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDKDESKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFHPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYFLVKKDYESYY"
     gene            8933..10303
                     /locus_tag="ROE18_000295"
     CDS             8933..10303
                     /locus_tag="ROE18_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HDX3650518.1"
                     /translation="MKAIIDNIKILEQNAINKGLDELILMENAGLNLAKLIKKEAKKI
                     RIQRKIRKVKILFLLGGGNNASDGLVALRNLKHAKAYKIGFKENTLFKKQEQILQNYA
                     FKFCKKEPNFKKFHIIIDCILGTGSNRCLDEKTSLIIQKVNQSKALKIACDIPTNLGF
                     YPCFKADITFCMGALKEILLEDFAKEFVGRIKIANLGIRSKKFYPNSQAFLLEKKDLK
                     TIDRKINANKGNFGHIYIVANASAGTLAGLGALNFGAGLVSLVAQKSFSPLLMLKEKI
                     ENNASAIALGMGLENLDFLKDEILQNTPLILDANCFLSEALLWYLNRKDVVITPHPKE
                     FIKLYKMCFDENLDIETLQKNRFFYARKFSQNYDCVLVLKGANPIIVQKEKLFVVNLG
                     NQALAKGGSGDVLSGMIAAHLGFGFSALEAAKNATLAHGLVAKKYKFNKNSFDALKLI
                     KGLKCL"
     gene            10294..10860
                     /gene="purN"
                     /locus_tag="ROE18_000296"
     CDS             10294..10860
                     /gene="purN"
                     /locus_tag="ROE18_000296"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HDX3650519.1"
                     /translation="MLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEVVLCICNKKD
                     AFGVQRAKKFGLDTVIVDHKAYNTREEFDTILVQKIKESGANLTVLAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDGGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            10932..11651
                     /locus_tag="ROE18_000297"
     CDS             10932..11651
                     /locus_tag="ROE18_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HDX3650520.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPAEHR
                     DKGRILGLAFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEESQSHFKASNKLWIVVAEIAVIDIVFSLDSVITAVGIAQDVTIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQRKEKNG"
     gene            11644..11853
                     /locus_tag="ROE18_000298"
     CDS             11644..11853
                     /locus_tag="ROE18_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HDX3650521.1"
                     /translation="MAKDANGIELNTGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            11863..13047
                     /locus_tag="ROE18_000299"
     CDS             11863..13047
                     /locus_tag="ROE18_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HDX3650522.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNALRLLSGSVKNI
                     VSEYKILNVKNDEDLSKILLKLLEMRMQKGEFSIINAYNETLKIYKDLAKQYRYKIYV
                     IVFDSSLKQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSRDWKKCLYQ
                     MPNLSKYKKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLK
                     ICEKENVCLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDARKLYPHLK
                     ECLYYKFQNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKVANQFCNFT
                     SDNLYQIFGHRNKEKLPMKIAKRVFLCEGKIDDGGYLRVVTLDEKGFECIEIKNQIYK
                     KK"
     gene            complement(13060..14418)
                     /locus_tag="ROE18_000300"
     CDS             complement(13060..14418)
                     /locus_tag="ROE18_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HDX3650523.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSILMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMIKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTMAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWMLFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELNHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPMVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
     gene            complement(14517..15722)
                     /locus_tag="ROE18_000301"
     CDS             complement(14517..15722)
                     /locus_tag="ROE18_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HDX3650524.1"
                     /translation="MIMFSSFFKSKKWALWAYLGLFLLLFFLYIQTSLNVAINSWYSD
                     FYNVLQKPKIELLDSNSTQKIEENLENNATLIQEANQRAEQNFQKANFINKGALYYYQ
                     NLLEYFFNSRAMIEKPNYSASDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREA
                     MTFSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIKALMTLVAFIPILWSL
                     SDVVSKALFANLSENSFFYFLKNIDGLLVYIALLISLGGLVVSWFVGIKLPGLEYNNQ
                     KAEAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMI
                     VIVPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSIFITNWTTITQLRSIYKRLKE
                     FEKNISYKS"
     gene            complement(15768..16514)
                     /locus_tag="ROE18_000302"
     CDS             complement(15768..16514)
                     /locus_tag="ROE18_000302"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDX3650525.1"
                     /translation="MKSSVIFGFVLSLILHTLVLMFSLFSFYTQEKSSGVDFKQGAEF
                     TSIMMVSEFPIGELKEVSIDQKKSNSQDKNKKQDERISFNSQDKNAVLKVQKKIEKQD
                     ENQAQKEIANASENSKFKNESLSAPLQSNKDKTQTIVSGNAKEQVKSYQALLMAHLTK
                     FKKYPQEAIMQKQEGVVRIRVSIDESGNVLSKELKKSCPYAALNDEALSLFKRASPLP
                     KPPKEMLKNGDKISFVMPIDYNIKDYLGKK"
     gene            complement(16516..16926)
                     /locus_tag="ROE18_000303"
     CDS             complement(16516..16926)
                     /locus_tag="ROE18_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HDX3650526.1"
                     /translation="MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIK
                     IELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLSLENLSSALDIKTKGNKEEIIYF
                     HIDKSVKYEDIMQVMQKLKENGYGKIALSSKKMD"
     gene            complement(16913..17674)
                     /locus_tag="ROE18_000304"
     CDS             complement(16913..17674)
                     /locus_tag="ROE18_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HDX3650527.1"
                     /translation="MLKKYFYFVFLLLNLNAEANATDTNLSFDSSKIETEAPKIELSL
                     SSLYQNADEVVKGVIYILVLFSILAWAVFISKLMQFYFMKKNLDLSIQKIKELKNLNE
                     LDQTKDFAGVLSLEIQDELEKSEYKNDHIKERIELRLQNTISKQITASKNGLSLLASI
                     GASAPFIGLFGTVWGIMNAFIGIANLGNASLAVVAPGIAEALFATAFGLIAAIPAVLF
                     YNYLTRKNLKLMHHLDELANFVYILFHRSYFNDKN"
     gene            complement(17686..19953)
                     /locus_tag="ROE18_000305"
     CDS             complement(17686..19953)
                     /locus_tag="ROE18_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDX3650528.1"
                     /translation="MKKLSLFCAVGLCFASFAFSEELEFDSLEISGSKIKNDEKPFVT
                     PGATSTREGIGSDTQSIDSIVRSIPGTYTNTDQAQGTVQVNIRGMSGFGRVNTMIDGV
                     TQTFYGSASDDPARFHSQTGTSAFGAVIDTNFLIGVDVTRGTFEGVGGANALMGSANF
                     KTIGINDIVHDGNIFGFLGRFSYGSNGIGPSYMSAVAGKTELENNGYVGALFGYSAKR
                     ITQNYTVGGGGKIGSSMVDTDGDGIADTNIAPFDPDFLTQKPNSQLFKLEYVPNSFTN
                     TIFSYRRYQNELAGRKIHNDNYQLDFWHNPNEWLNVNTLIAYNQGIQTYGSKFTFAAN
                     DAIANTKAKNTATTFDISDTLEGEWHRFNLNIRFGANILLNDYKNTLNTSIQGVNSIP
                     FQPRGKQNLFTYYLDNSLNYGIFTLDTNVNLLDWNIKGHRPACDEVNFMCFPKAATDI
                     DKNGLRLNASVMLSAAIHELFTPFVSFARTNRAPNVQEMFFSNNEGNGINSFLKPEQA
                     NTWQIGFNSFKHGLLKDDDRFGFKAVYYHTKIKDYIYNEQFYLEDPSKDPPSSQFYMH
                     LNSADDTIFKGVELELSYDLGFAYAKAMYSRQDTSSTISQTSGPLLGSFSASKIMELP
                     KDYANVELGFRLNDKISFGGIAKYTGKAKRVNPNTDDWNKDPNNPYYPKPTTQDLPKI
                     PIIVDLYWNIEWFKNLTMRAEVQNLFDKNYMDALNAYNSLDNQLQYNGAGDPIYLFSN
                     SARGRTFIVSFEYKY"
     gene            complement(19950..20801)
                     /locus_tag="ROE18_000306"
     CDS             complement(19950..20801)
                     /locus_tag="ROE18_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HDX3650529.1"
                     /translation="MKFYTILSILFISFMLSACAVLQKSSPLQENKDFYILDTHTQKK
                     ISFEDMILELLKADVILLGEKHDEVKHKISQVMIFNALEGNLSSQNINFDVALEMLAS
                     TEQNHLDKAFKNKKTIKANELTNALNWDKVWKWKDYEQFVNVVFYSKSKILGANLSRS
                     EITSIYNGAQPLKGYVSTTNEVKKQLFDIISLSHKLNPEENKELLDKLVEIQQFKDRR
                     MADVLVHHVNKVLLLAGSYHTSKKIGIPLHIQDFKSSKKIVVVNLSYGEIDLKDSDYV
                     LIYKGEE"
BASE COUNT         7404 a         3123 c         3332 g         7001 t
ORIGIN      
        1 aatttatata aattaaaaaa ccataaagct taattttatt atttaaaatt tacaaaataa
       61 atgctaaaat caatatttta ttttcaagga aaaagatgat taaaatagga atttatggcg
      121 ctaaaggacg aatgggaaaa cagattgaag aatgtttaaa aagcgaaaca caagcacgaa
      181 tttcgatact ttatgataag ggtggaaatt taggagagct ttttgaaaaa agcgatgtga
      241 ttattgattt ttcttcccca agtggaactc atgagctttt aaattatgca agaactatgc
      301 ctaaaccttt ggtaataggt acaacagggc ttgatgagaa aattttacat ttgatgcaaa
      361 gtgctagtga agtgatgccg attttttatg cgaccaatat gtctttaggt gttgcggttt
      421 taaactatct tgctagtaaa gccagtcaaa tgctaagaaa ttttgatata gaaattttag
      481 aaatgcatca tcgccataaa aaagatgccc caagtggtac agctatgact ttagctcaaa
      541 gtgtagcaaa agctagaaat ttagaacttg aaaaagtaag agtaagtgga agagatggca
      601 ttataggtga aagaagtaaa gatgagattg ccgtgatgag tttaaggggt ggcgatatag
      661 taggacgcca tacggtaggt ttttacgaag atggtgagtt tttagaactt aatcataccg
      721 ctacttcaag ggcgactttt gctaaaggtg cgattaaaat cgctatttgg cttagcaagc
      781 aagaagcaaa aatgtattca atcaatgatt ttttaggaat ttaaaatgtg tgcagttgta
      841 ggagttatca attcaaaaaa tgctagcact tatgcgtatt atgcgctttt tgctatgcaa
      901 caccgtgggc aagaagcaag tggcattagt gtgagtaatg gtaaaaatat taagactatt
      961 aaagctaaag gtgaagtgag tcaaattttt aatcctgata atctaaaaac tttagaaggt
     1021 gaaatcgcta tagggcataa tcgctattct acagcaggaa attcaagttt aaatgacgct
     1081 cagcccatag cagctacttc ggttttaggt gatattgctt tagcgcataa tggaaattta
     1141 gtcaataaag aagaggtaag atcaagactt attcaagatg gagctatttt tcaaaccaat
     1201 atggatacag aaaatgttgt ccatcttatc gcaagaagta agcaagaaag tctaaaagat
     1261 agatttattg agagtttaaa agaatgtata ggagcttatt gttttgtttt agcaagcaaa
     1321 gataaacttt atgttgtaag agatcctcat ggggtgcgtc ctttgtcttt agggcgttta
     1381 aaagatggag gctatatagt tgctagtgaa acttgtgctt ttgatcttat agaggctgaa
     1441 tttattcgtg atgttaaacc aggggaaatg cttattttta ctcagggaaa tgataaattt
     1501 gaaagcatag aacttttttc tcaaactcct agaatttgcg cttttgaata catttatttt
     1561 gctagacctg atagtatagt agaaggcaaa agcgtgtatg aagtgcgtaa aaaaatgggc
     1621 gaagctttag ctaaaaaatt tgcttataaa gcagactttg tcgtgcctgt gccagatagt
     1681 ggagtaagtg cagctatagg ttttgcgcaa tatttacaaa tccctcttga aatggcaata
     1741 gtaagaaatc attatgtagg aagaactttt atagagccaa ctcaagagct tagaaattta
     1801 aaagtaaaat taaaacttaa tcctatgcgt aaagttttag aaggcaaaga aatcgtagtc
     1861 attgatgata gcttggtgcg tggcactact tctaaaaaaa taatttcttt gcttcgtgct
     1921 gcaggagcga gcaaaatcca tcttgccata gcttgtcctg agatcaaatt tcctgatact
     1981 tatggcatag atactccaac ttttgaagaa cttatcagtg caaataaaaa tgctgaagaa
     2041 gtgcgtgaat atgtagaagc tgatacgcta agttttttaa gcatagaaga gctaactcaa
     2101 agcataggcg atgaaaggaa atattcttta atcagttttg atggagatta ttttattaaa
     2161 taattttatt ttaaattagg attaggcaaa gttgcacttg cacttcctac atttatattt
     2221 tgagttggtg gcaaaggagt atttggtgta tcaatttgac ttaaaagctc taaagtttga
     2281 ttaaattcga agctttcttc aggattttgt cctaagaatt tttgcataaa ttctttttta
     2341 gaaatagctt catcaagttc tttatcactt cctttctgat aagcaccgat gcgaagcaat
     2401 acttcatttt cttttaaaag cgagtttaaa cgcttaaatt ttcttgccca aagtttatgt
     2461 tcaggactta taatgtcact catcaccctt gaagcagagt tttgtatatt aataggagga
     2521 taaattccaa agtctgttaa ttcacggctt aaaacaatgt gtccatctaa gatagaacga
     2581 ctttgatcgg cgattggatc gctcatatca tcaccatcca ctaaaacggt aaaaaaggct
     2641 gttatagtgc ctttaccttc ttctttaccg gttctttcca tgagttgagg caaaagactt
     2701 aaaacacttg gtggataacc tttggttgta ggaggctctc caagagctag tccaatttct
     2761 ctttgtgcca tagcaaaacg cgttacacta tccatgataa aaagtacatc tttgccctgt
     2821 tctttaaagt attctgccac actcattgcg caaaaagcac cgtatttacg catcaaagca
     2881 ctatcatcac ttgtagcaac aataatcact gtatcatcga gctttccgcc taaatttttt
     2941 tgtataaatt caggaatttc acgccccctt tctcctatga gtgccactac ttttatagga
     3001 gctttggaat ttttaactat cattcccata agagtggatt ttcctacccc acttcctgca
     3061 aaaataccaa gtttttgtcc tacaccacaa gttaaaagcg cgtctatggt tttaacaccc
     3121 acgggaaaaa cttcttctat aagccctctt ttcattgcat caataggtgc acgcattata
     3181 ggcatatatt tggttgcttc tatagctcct ttaccatctt ttggacgcat aaaaggatct
     3241 actaccctgc ctaaaagttc atcgctaacg cctatttgca tacctgcatc acttataaaa
     3301 gcacgatcgc ctattttaaa accttctata aaagaaaatg ggcttaaata gctaaattgt
     3361 tctttgattt ctacaaccat agctagagtg tttaaatttt cattttcatt agaaactaac
     3421 ttcactatat ctccaacccc tgttttaagc ccacgaattt ctatacttgt agcagaaatt
     3481 tttgtaatct ctccaaaaat agcacttaaa ttttctttgc caagtttgga gcgtagtttt
     3541 tcaagattca ttaaaatctt acctgtttag cagagtttat gagagaaaaa aattcctctc
     3601 tggttttttc attttttaag aaaattccac gtaaagctga agttgtagtg gtggaattag
     3661 ctttttgcac tccacgcatt tcaacacaca tatgtcttgc ttctatgact acacccacac
     3721 cttttgcatc gacattttcc attaaagctt gtgcgatttg ttcagtaagt tgttcttgaa
     3781 tttgaagtct tcttgcaaac acttctacaa ggcgtggaat tttgcttaaa cctactactt
     3841 ttttattagg gatataggct acatgagcac gcccaaaaaa aggcaaaaga tgatgttcgc
     3901 aaagactgta aaattctata tcacgcacta aaaccatttc attattagaa ctttcaaata
     3961 aagcgtcatt taaaatttct ttgacatttt gcgtataacc actagtaaga aattcataag
     4021 ctttaaaaac acgatttggc gttttaataa gcccttcacg atttggattt tctcctataa
     4081 tttcaagcat ggttttaaca caatcttcaa attttttttg cacatttttc tccaaaaata
     4141 ttttttatat tttaataata atgtaatatt gcaattttat cataaattac tttaaaattt
     4201 tatgcaagta ataaggaaaa atttgctatc attgaaggca aattttattt tataaggaaa
     4261 aaactatgga agtaaaggca aagcaactag attctgttaa tgcgactgct agtgtaaaaa
     4321 ttccttcagg aatgatcaaa agtgaagtag aaaatttagc aaaaaaagct tctaaaagtg
     4381 taaaaatgga tgggtttaga ccaggaaaag ttcctgtaag tgccgtactt aaaagatatg
     4441 aaagagagct cactcaagat gcagaacaaa atctttttaa atccgctgta aatagcgctt
     4501 tacaagaact taaaaaagaa aataaagagc ttgtaggtga gccatatttt gaaaaatttg
     4561 atcgtaaaga tggagaaatt attgctgaat taatactttc ttttaaacct gaaatcaaac
     4621 ttgagggtta tgaaaaactc atccctgaat atcaaactcc aaaagtaagt aaaaaagaaa
     4681 ttgatgagaa aaaagatgag cttttaaagc gttttgctac tcctgaagct ataaaaacaa
     4741 aaagagcttt aaaagaaggt gattttgcaa aatttgattt tgaaggtttt gtagatgata
     4801 aagcttttga aggtggtaaa gctgaaaatt atgttttaga aattggttct aagcaattta
     4861 ttccaggttt tgaagatggt atggtgggaa tgaaaatagg tgaagaaaaa gatatcaaag
     4921 taactttccc taaagaatac ggcgcagcgc atttagcggg taaagatgca gtatttaaag
     4981 taaaactaca tgaaattcaa gagcttaaaa ttccagaact tgatgatgaa atgcttaaaa
     5041 aacttttacc aggagaagaa aaagctagtg ttgaagtttt agatgaaaaa ttaaaagagc
     5101 aaatcaaaaa tgaaaaactt ttcaaacttg taaatgatga attaaaaggc aaatttgcag
     5161 atgctttgat tgaaaaatat aattttgatt tacctaaagg catagtagaa caagaaactg
     5221 atatgcagat gcgtgcggct tttaatactt ttagcgaaaa agaaattgaa gagcttaaag
     5281 caagtaaaga aaaatatcaa gaaaaacgtg attcttttaa agaagaagca caaaaaagtg
     5341 taaaacttac ttttatcatt gatgaacttg caaaattgcg taagattgaa gtaaatgatc
     5401 aagaattgat tcaagcgatt tattttgaag catatcgcta tggtatgaat ccaaaagagc
     5461 atttagaaaa ctataaaaaa caaggagctt tgcctgctgt gaaaatggct ttaattgaag
     5521 aaaaactttt taatgatatt tttataccaa aaacagaaaa atcagaaaaa gtgagcaaaa
     5581 aagagaaaga agataaataa tgtttattcc ttatgttatt gaaaaatcta gtcgtggtga
     5641 aagaagttat gacatttatt cacgcctttt aaaagataga attattatgc taagtggtga
     5701 aattcatgat gaacttgccg cttctatcgt agcacaactt ctttttttag aagctgaaga
     5761 tcctacaaaa gatatttatc tttatatcaa ttctccaggt ggtgtaatta caagtggttt
     5821 tagtatttat gatactatga actatatcaa acctgatgtt tgtacgattt gtataggaca
     5881 agctgcttct atgggagcat ttttgcttag ttgtggcgca gaaggaaaac gttttgcttt
     5941 gcctaattca cgtattatga ttcatcaacc tttaggtgga gctagaggtc aagccacaga
     6001 tattgaaatt caagccaaag aaattttaag actcaaaact atacttaatg atattttggc
     6061 aaaaaatact aagcaaaaag ttgcaaaaat agcaaaagat acagaaagag attttttcat
     6121 gtcagcacaa gaagctaaag aatatgggct gattgataag gttttggaaa aaagttttaa
     6181 atgatttctt tggagatcat ttaaaacaaa ggttttttaa tggttagaaa aattatcacc
     6241 tatcccaatc ctagactttt tttaaactct gaaattgtaa ataaatttga tacagaactt
     6301 cacaccttgc ttgatgatat gtatgaaact atgatagcaa gtaatggagt aggtttagca
     6361 gctattcaag tggatattcc tttgcgtgtt ttacttgtaa atatttttga tgaaaacgat
     6421 gaacaaaaaa aagaagattt gctagagatt atcaatcctg aaattattcc tttagatgaa
     6481 gaaatgatta cttgcacaga agggtgtttg agtgtgccag atttttttga agaagtgaaa
     6541 cgctataatc atatcttgct taaatatcaa gatcgctttg gagaatttaa agaacttgaa
     6601 gcaaaaggtt ttttagctgt ggctattcaa cacgaaaatg atcatttaaa tggacattta
     6661 tttatagaaa aaatttcctt tgctaagcgt caaaaattcg ataaagaatt taagaaaaag
     6721 aagaaaaatc ataaaaaaga gaaatgaaaa aactaaagtg cataagcttt catgaaggct
     6781 tagacattat agaggtagaa tccactttta caagaggttt gccaaattta agcatagtag
     6841 ggcttgcaag tacagcgatt aaggaaagtg tcgaacgcat caaagccaca cttttaagtt
     6901 gtgattttgc ttttcctgct aaaaaaatca ctatcaatct tagtccttca ggcatcccaa
     6961 aaaagggatc gcattttgat ttggctatcg ctttattaat ccttttgcaa aatgaagaat
     7021 tagatgactt ttttgtagta ggagaattag gacttgatgg aagtattaaa agcacaaatg
     7081 agcttttttc tttgcttttg tttctctcta ctaaaattaa aaaagctaag atcgttgttc
     7141 caaaaagtat agcacaaaaa gcttccatga taccaaattt agaggtttat ggacttgaaa
     7201 atttaaatga agcaatagag ttttttaaag aaaaaaatta tgaaaatttt cgcttttctc
     7261 acaatcatcc tttatttgca aaccctttac aaatagaaaa tgaaattttt ttacaaaata
     7321 tggattttaa acttgatttt aaagatatca aagggcagga aaaagccaaa agagcttgta
     7381 tgatagctgc tttaggtatg cataatatct tatttgaagg aagtccagga agtggtaaaa
     7441 gcatgtgtgc taaacgcctt gtttatatca tgccccctca aagtttaagt gaaattttaa
     7501 tgcaaaatgc ttatatgtct ttagattcaa aagattgtga atttactaaa attcgtgctt
     7561 ttcgtcatcc tcatcatact tctacaagag caagtatttt tggcggagga acaaaaaatg
     7621 ccagaattgg agaagtagca cttgcaaatg gtggagtatt gttttttgat gaatttccac
     7681 attttaacaa gcaaatcata gagagtttaa gagaaccttt agaggatcat aaaattcata
     7741 tttcaagagt aaattctaaa atcacttatg aaacaaaatt tagctttata gctgcccaaa
     7801 atccttgtcc ttgtggaaat ttattctcca aaaatctttc ttgtgtttgt agtgaaaatg
     7861 agattaaaaa atacaaaaat cacatttcag ctcctattat ggataggatt gatctttatg
     7921 tagctatgga tgagatcagc aaggatgata aaacgagtat aagttctaaa gaaatgagtg
     7981 aaaaaatttt acaagctttt atttttagta aaaaacgggg gcaaaaagaa tttaatggga
     8041 aattaaaaga tgaagattta agtcgttttt gtgtattgga aaaagatgcc aaagatacgc
     8101 tagatttagc aatttcacgt tataatcttt ctttgcgatc gcttaataaa attttaaaag
     8161 tttcaagaag tatagcggat ttagaacaaa gtcttaatat tagcaaaacc catattttag
     8221 aagctttaag ctttagagca aggaattaaa atggaaaata aaagtatagc tatctttata
     8281 gatgcagaaa atatccctgc aaaatacgct aaaagtattt ttgatatcgc ttcagattac
     8341 ggagaggtta tcattaaacg catttatggg gattggactc aaaaaaatat acaaggttgg
     8401 agagagcaaa ttgctgaata ttctttaatc gctatgcaac aatttaattt tgcagccaac
     8461 aaaaactcaa gcgatatgta tttaatcact gaaattatgt ccatatttta tgaaaaaaat
     8521 atagatattt ttgttattgt ttcaagcgat agtgattata cttcactcat tcaaaaatta
     8581 agagaaaata aaaaacaagt tataggaatg gggcttgaaa agtctataaa atcttatgta
     8641 aatgccttta gtgaattttt ttatttagat aaagatgaga gtaaaaaaga agatatttta
     8701 agtaaggatt atttaagagc tttaatcaat atcaccgaac aacttatcga tgaaaaaggg
     8761 cgtgccgaat acgcacaaat ccgtactaat atgaaccgca aatactcgga ttttcatccg
     8821 caaaattatg gttttaagaa ttttcgtgct ttgatccaga aatttttacc caaaatgaaa
     8881 aaatttgaag aagaaagaga aaaaaatata tattttttgg tgaaaaaaga ttatgaaagc
     8941 tattattgat aatataaaaa ttttagaaca aaatgctata aataaaggct tagatgagct
     9001 tattttaatg gaaaatgcgg gattaaattt agccaagcta attaaaaaag aagctaaaaa
     9061 aattcgcatt caacgcaaga ttagaaaagt aaaaatactt tttttattag gcgggggtaa
     9121 caacgcttca gatggcttgg tggctttaag aaatttaaaa cacgctaaag cttataaaat
     9181 aggctttaaa gaaaatacgc tttttaaaaa acaagagcaa attttacaaa attatgcttt
     9241 taaattttgt aaaaaagaac ccaattttaa aaaatttcat attatcattg attgtatttt
     9301 aggtacaggt tcaaatcgtt gtttagatga aaaaacaagt ttaattattc aaaaagttaa
     9361 tcaaagtaag gctttaaaaa tagcttgtga tatacctaca aatttgggat tttatccttg
     9421 ttttaaagct gatattacat tttgtatggg agctttaaag gaaattttac ttgaagattt
     9481 tgctaaggaa tttgtaggaa ggattaaaat agccaattta ggcattagat ctaagaaatt
     9541 ttaccctaat tctcaagctt ttttgcttga aaaaaaagat ttaaaaacta tagatagaaa
     9601 aatcaacgcc aataaaggaa attttggcca tatttatata gttgccaatg caagtgctgg
     9661 aactttggca ggacttggag ccttaaattt tggagcaggt cttgtttctt tagtagcaca
     9721 aaaaagtttc tcgcctcttt tgatgttaaa agaaaaaatt gaaaataatg caagtgctat
     9781 tgctttaggt atggggcttg aaaatttgga ttttctaaaa gatgaaattt tgcaaaacac
     9841 tcctttgatc ttggatgcaa actgcttttt aagtgaagct ttgctttggt atttaaacag
     9901 aaaagatgtt gttataaccc ctcatccaaa agaatttata aaactttata aaatgtgctt
     9961 tgatgagaat ttagatatag aaacattgca aaaaaatcgc tttttctatg ctagaaaatt
    10021 ttcacaaaat tatgattgtg ttcttgtttt aaaaggagca aatcctatta ttgtgcaaaa
    10081 agaaaaatta tttgttgtaa atttaggaaa tcaagcctta gctaaaggtg ggagtggaga
    10141 tgttttaagt ggaatgattg ctgcacattt aggttttggt tttagcgctt tagaagcagc
    10201 aaaaaatgct actttagctc atggacttgt tgcaaaaaaa tataaattta ataaaaatag
    10261 ctttgacgct ttaaaactta tcaaaggatt aaaatgcttg taaaattagc tgtacttttt
    10321 agtggaaatg gaagtaattt agaaaatatt ttagaaaaac ttcataaaaa aaccataggg
    10381 gaaaatacct atgaagtagt actttgcatt tgtaataaaa aagatgcttt tggtgtacaa
    10441 agagcaaaaa aatttggtct tgatactgtc attgttgatc ataaggctta taatactcgt
    10501 gaagaatttg atacgatttt ggtacaaaaa atcaaagaaa gtggagcaaa tcttactgta
    10561 ttagcaggtt ttatgagaat tttaagtcct gtttttacaa aaaatattaa ggcaattaac
    10621 cttcatcctt ctttattacc cctttttaaa ggagcacatg cgattaaaga aagttatgaa
    10681 agtgatatga aagtagctgg tgtgagtgtg cattgggtca gtgaagaact tgatggtgga
    10741 atgattatag ctcaaaaagc ttttgaaaaa agaaatttga gttttgaaga atttgaagaa
    10801 aaaattcata gtctagaaca tgaaatttta cccttaagtg tgattgaaat tttttcttaa
    10861 agaattaaag gtatttgctt taaaactata aaatatcgct ttaaaaaatt ttaaaatttt
    10921 caaggaaatt tatgtttgaa tggatattta gtattgatgc ttggattact ttagctactt
    10981 taagtgctct tgaaattgta ctagggatag ataatatcat ttttttagct attttagtaa
    11041 gcaaactacc cgctgaacat cgtgataaag gacgtatctt aggtttagct tttgcaatga
    11101 ttacaagaat tttacttctt ttatctcttt tttgggtaat gaaacttgta acacctttgt
    11161 ttagtgtatt gggcaatgaa atttcaggaa gagatctagt tcttttacta ggtgggcttt
    11221 tcttgattgt aaagtctatt aaagaaatta aagagcaaat ttctcatcaa gaagaaagtc
    11281 aaagtcattt taaagcaagc aataaacttt ggatagttgt agctgaaatt gctgtgattg
    11341 acatagtgtt ttcgcttgat agtgttatta ccgcagtagg aattgctcaa gatgtaacca
    11401 tcatgattat cgctgttatt atcgcagtag ctgtgatgct ttttgcttct aaacctatag
    11461 cagattttgt tgaaaaatat ccaagcatta aaattttagc cttagctttt ttggtgctaa
    11521 taggcgtagt tttagttgct gaaagttttg atattcatat tgataaggca tatatttata
    11581 ccgctatggc ttttgcttta gtggtgcaaa ttttaaatat tttagatcaa agaaaggaaa
    11641 aaaatggcta aagacgctaa tggaatagaa cttaacacag gtgatagcgt gagtgtaata
    11701 aaagatctta aggttaaagg tgcaagtaca actttaaaac gtggaactac tataaaaaat
    11761 attaagctca cttctaaaga aggtgaaatt gaggctagag tagataaatt tggcgttatt
    11821 gttttaaaaa ctgaattttt aaagaaaatc taggcaaaga atgtgcgaat cttacttgtt
    11881 ttaagaggga attattacgc aggacaagaa gaatttatca aaaataataa acttcaaaat
    11941 tatacacttg atttaaatgc tttgcgtctt ttatcaggaa gcgttaaaaa tatagtcagt
    12001 gaatataaaa ttttaaatgt taaaaatgat gaagatttga gtaaaatttt actcaaactt
    12061 ctagaaatgc gtatgcaaaa aggtgagttt agcatcataa acgcttacaa cgaaacatta
    12121 aaaatttata aagacttagc taaacaatat cgctataaaa tatatgttat tgtttttgat
    12181 agctctttaa aacaatgtca agaaaaaaat cttttagaag ctaaaaaaaa tggatatatc
    12241 attccttatg ctcttttgga aaaaactcaa gatttgctca aaaaaaatcc aaaaaaatac
    12301 ccaattttag actcaagaga ctggaaaaaa tgtctttacc aaatgccaaa tttaagcaaa
    12361 tacaaaaaaa ttcatcatat aggagattta caaggttgct atagtgtttt aaaagaatac
    12421 attaaaacaa tcaaagaaga tgaattttat atatttttgg gagattatat caacagaggt
    12481 atagaaaatg gcaaagtaat aaaatttctt ttaaaaattt gcgaaaaaga aaacgtatgc
    12541 ttattagaag gaaatcacga aagacatctt ataaaatggg ctaatggaga attgtcaaat
    12601 tccaaagaat ttaatgaaaa tactttaaag gattttagaa aagaaaaact tactccaaga
    12661 gatgctagaa aactctatcc tcatctaaaa gaatgtttat actacaaatt ccaaaataaa
    12721 ttcatatttt gttcacatgg aggagtaaat tttataccct ccaaacctga aaaaataagt
    12781 tttataccaa gccatgactt tatttatggt gtaggtggat atgaagacag tcaaaaagta
    12841 gcaaatcaat tttgtaattt cacctcggac aatctttatc aaatctttgg acacagaaat
    12901 aaagaaaaac ttcctatgaa aatagccaaa agagtatttt tatgcgaggg taaaatagat
    12961 gatggtggat atttacgcgt agttacacta gatgaaaaag gttttgagtg tatagaaatt
    13021 aaaaaccaaa tttacaaaaa gaaataagcc taaagaggct tattcttcat ctttatttgt
    13081 ttttttaacc accttaacac gctctataga attcccatcc atttttttaa cttcatagta
    13141 acaaagttca tcttcaatgc gatctcctac cataggcaag cgtcctaaaa gattaaatac
    13201 ataaccacct atagtaactt gttctaaatc ctcatcatag tttattacaa gcatttcttc
    13261 aacagtttct atatcgcatc gtccttgaaa ttcatagata ttttcagcaa gttttttata
    13321 gctgtcttct tcatgctcgc ttttaatttc gccaataatt tcttccatga tatcttccat
    13381 ggttaaaatt ccagcagttc caccatactc atcaactact aatgcagtat gagagcgttc
    13441 tttattcatc attacaagta cttttgaaat gctgatattt tcaggaacca aaatcaaagg
    13501 tttaacaaaa gtatctaaat tttgactttt atggtttaat tcattttgta ttatatctcg
    13561 tatgtgtatc atacctaaaa tagtatcttt agagccatca atataaggaa agcgagtatg
    13621 tttatgctca caaatgattt gcatattttc ttcgtaactt ttttgtttat ttagacaaat
    13681 catatctttt ctaggagtca taatctcttt agcaacagta tctgaaaaat caacagcatt
    13741 gcgtatgatc tctgtttcaa attcatctaa aactccacct ttttgactct cacttgctat
    13801 gattttaatt tcttcttcgc tatgagttag ctcgctttct ttagcaggtt ttattccaaa
    13861 aagtttcaaa cttatagctg ctaaaaaatc gaaaatttta atacaaggca aaaagagcat
    13921 ccaaaaccaa tgaagcggtc tagctataaa taaaaccgct ttatctgcaa ctgcaatagc
    13981 tatacttttt ggcacaagtt ctcctaaaac cacatgtaaa agagtaataa tgctaaaagc
    14041 aataatgaaa gccatagtat ggataataac agtgctaaaa ccaagattaa taagcggaat
    14101 ttctagcatt tttgcaatag caggctcacc tatccaacca agagctagag aacttaaagt
    14161 gattcctaat tgacaagcac taagataagt atcaagtctt gaagtaacct ccaaagcttt
    14221 cttggcacca gctttttttt cttttatcat ctcttcaagc ttggaacgac gtactttaac
    14281 aatactaaat tcagacaaaa caaaaaaacc atttaaaaac actagagcaa gtgcaacaac
    14341 aaccataagt atagaatatc ctgcatcaaa agatgctgta gaagtttggt ttaaatccaa
    14401 aacctgactg gggtccaatg aagctcctta agaaataaaa tattattaaa ccttattata
    14461 cacaattaaa agtaaattta atatttgaat tttttcttgt attttataag aaaaaactaa
    14521 gacttataag aaatattttt ctcaaattct tttaaacgct tatatatact tctaagttga
    14581 gtgatagttg tccagtttgt gataaaaata ctaaaagagc ttcgcacttg atcaaatgca
    14641 ttattaatct gcattacaat accaagtcct atagctccag caaaaagccc tggtgccatg
    14701 attaaaaatg gcactataac tatcatttgc tcaaataaaa tgagccaaat attaaaatat
    14761 ccataatgta aaaaaagtct tttatagtta aatttaagcc ctgtaaaaag ctctatcata
    14821 gtctcatttt tagcgtattc tttgcgatta tcctcagcat aaacaagctc ttttctaaaa
    14881 gctgcttcag ctttttgatt gttatattca agtccaggaa gcttaatacc tacaaaccat
    14941 gacacaacca agcctcctaa agaaatcaaa agtgcaatat aaacaagcaa accatcaatg
    15001 ttttttaaaa aataaaaaaa agaattttcg cttaaatttg caaataaagc tttactcaca
    15061 acatcactta aactccataa aatcggaata aatgctacaa gggtcatcaa agcttttata
    15121 aaactaagtc ctaaactctc tacgatttta gaaaaattat aagtatcttc ttgaattctt
    15181 tgcgaacttc cttctatatt atcatcttta tttttccaaa attttaaata agaaaaagtc
    15241 atagcctcac gccacttaaa agcatagacg ctagcaaaat agatattaat tgtagcgatt
    15301 aaaacataag gaatagcaat agccaaaaaa actaaaatca aagcataaaa atcacttgct
    15361 gaataatttg gcttttcaat catagcccta gagttgaaaa aatattctaa taaattttga
    15421 taataataca atgcgccttt attgataaaa ttagcttttt ggaaattttg ctcagctctt
    15481 tgattagcct cttggattaa agtggcatta ttttcaagat tttcttctat tttttgcgta
    15541 gaattagaat ccaaaagttc tatttttggc ttttgtaaaa cattgtaaaa atcactatac
    15601 catgaattga tcgcaacatt taagcttgtt tgtatatata agaaaaataa cagtaaaaaa
    15661 agtcccaaat aagcccataa agcccatttt ttacttttaa aaaacgaaga gaacataatc
    15721 atcaccttta aaataaaaat tctaataaac tttttttaat gaaaagttta ttttttacct
    15781 aaatagtctt taatattgta atcaataggc ataacaaaac tgattttatc accatttttt
    15841 aacatttctt taggcggttt tggcaatgga gaagctcttt taaataaact taaagcttca
    15901 tcattgagcg ctgcataagg gcaagatttt ttaagctctt tgcttaagac atttccgctt
    15961 tcatcaatgc ttacgcgaat tcttacaacg ccttcttgtt tttgcattat cgcttcttga
    16021 ggatattttt taaatttagt caaatgagcc ataagcaaag cttgatagct tttaacttgt
    16081 tctttggcat tgccacttac tatagtttgt gttttatctt tattactttg tagcggagca
    16141 ctgagcgatt catttttaaa ttttgaattt tcacttgcat tagctatttc tttttgagct
    16201 tggttttcat cttgcttttc aatctttttt tgaactttta atacagcatt tttatcttga
    16261 gaattaaaac ttattctttc gtcttgtttt ttgtttttat cttgagaatt actctttttt
    16321 tgatcaatcg aaacttcttt taattccccg ataggaaact ctgataccat cataatggaa
    16381 gtaaattccg ctccttgttt aaaatcaaca ccacttgatt tttcttgagt ataaaaagaa
    16441 aaaagggaaa acattaatac taaagtatgc aatatcaaac ttaacacaaa cccaaaaatc
    16501 acactagact tcatactaat ccatcttttt acttgaaaga gctatttttc catagccatt
    16561 ctcttttaat ttttgcatta cttgcataat atcttcatac tttacacttt tatcgatatg
    16621 aaaataaata atttcttctt tattgccttt ggtttttata tctaaagcac ttgaaagatt
    16681 ttctaggctt aatttatcat cattaatagc caaagtatta tcagtattta aataaagtat
    16741 gatgggattt ttaagcttat cctctgcttg ctgcgaactc ttgggtaatt ctattttgat
    16801 agaacttgtg ataagaggag taacagccat aaaaacaatc aataatacaa gcataatatc
    16861 tataaaagga gttatattga tctcacttaa ctcctcttct ttgtgagcca tttcagtttt
    16921 tatcattaaa ataactccta tgaaaaagta tatagacaaa atttgcaagc tcatctaaat
    16981 ggtgcataag ttttaaattt tttcttgtaa gataattata aaaaagcacc gcagggatag
    17041 cagctatcaa gccaaaagct gtagcaaaca aggcttcagc tataccaggc gcaacgactg
    17101 ccaaagaagc attgccaaga tttgctatac ctataaatgc attcataatt ccccaaactg
    17161 ttccaaaaag ccctataaaa ggtgcgctag cacctatgct cgcaagcaaa ctcaagccat
    17221 ttttgcttgc tgtgatttgc tttgagatgg tattttgcaa acgcaattct atacgctctt
    17281 ttatgtgatc atttttatat tcactttttt caagctcatc ttgaatttct aaagataaaa
    17341 cacctgcaaa atcttttgtc tgatctaatt cattgagatt ttttaattct tttatctttt
    17401 gtatagacaa gtctagattt tttttcataa aataaaattg cataagctta gaaataaaaa
    17461 ctgcccatgc taaaatggaa aataaaacca atatataaat aacacctttt accacctcat
    17521 cagcattttg ataaagacta gaaagagaaa gctctatttt aggtgcttcg gtttctatct
    17581 tagaagaatc aaaagataaa tttgtatctg ttgcatttgc ttctgcattt aaatttaaca
    17641 ataaaaaaac aaaataaaaa tattttttta acatttgtat attccttaat atttatattc
    17701 aaaacttact ataaaagtac gaccgcgagc agaattgcta aaaagataga taggatcacc
    17761 tgctccatta tattgaagct gattatctaa ggaattataa gcatttaagg catccatgta
    17821 gtttttatca aataaatttt gcacctctgc tctcattgtg aggtttttaa accattctat
    17881 attccaatat aaatctacta taataggaat ttttggtaag tcttgtgtgg ttggtttagg
    17941 ataataagga ttgtttggat ccttattcca atcatctgta tttggattta ccctttttgc
    18001 tttgcctgtg tattttgcta taccaccaaa gcttatttta tcatttaacc taaagccaag
    18061 ctctacattt gcataatctt ttggaagctc catgatttta cttgccgaaa aagagccaag
    18121 aagaggtcct gaagtttgag aaatagtcga acttgtatct tgtcttgaat acatagcttt
    18181 agcataagca aaacccaagt catagcttaa ttctaactcc acacccttaa atatggtatc
    18241 atcagctgaa tttaagtgca tataaaattg cgagcttgga ggatctttac ttggatcttc
    18301 aagataaaat tgttcattat aaatataatc ttttattttt gtatgataat acacggcttt
    18361 aaaaccaaag cgatcatcat cttttaaaag tccatgttta aaagaattaa aacctatttg
    18421 ccaagtattg gcttgttctg gttttaagaa agaattgata ccattgcctt cgttatttga
    18481 gaaaaacatt tcttgcacat taggggctct atttgttctc gcaaaactta caaagggtgt
    18541 aaaaagctcg tgtatggcag ctgaaagcat gacagaagca ttcaggcgaa gtccattttt
    18601 atctatatct gtcgccgctt ttggaaaaca cataaaattt acttcatcgc aagcaggtct
    18661 gtgtcctttg atattccaat ctaaaagatt cacattggta tcaagtgtaa agataccata
    18721 atttagacta ttatcaagat aataagtaaa aagattttgt tttccacgag gctgaaaagg
    18781 tatagaattt actccttgaa ttgatgtatt taaggtattt ttataatcat taagcaaaat
    18841 atttgctcca aagcgtatgt ttagattaaa tctatgccat tcaccctcta aagtatcact
    18901 tatatcaaaa gtagtggcag tattttttgc ctttgtgtta gctatggcat cgtttgccgc
    18961 aaaagtaaat tttgatccat aggtttgtat gccttgattg taggcaataa gcgtatttac
    19021 attaagccac tcattagggt tgtgccaaaa atcaagttga taattgtcat tgtgtatttt
    19081 tctaccggca agttcgtttt gatatctacg ataagaaaat atagtgtttg taaaagaatt
    19141 tgggacatat tcgagtttaa aaagttgaga gtttggtttt tgggttaaaa aatctggatc
    19201 aaaaggagcg atattggtat cagctatacc atctccatca gtatcaacca tactactacc
    19261 tatcttgcca cccccgccta cagtgtaatt ttgagtaatt ctctttgcgc tataaccaaa
    19321 aagcgcgccc acatatccat tattttcaag ttcagtcttt ccagccactg cactcatata
    19381 acttggtccg attccattgc ttccataaga aaatcgtcct aaaaatccaa agatattgcc
    19441 atcatgtaca atatcattta tacctatggt cttaaaattt gctgatccca tcaaggcatt
    19501 tgctccacct actccttcaa aagttcccct tgtaacatca actccgatta agaaatttgt
    19561 atcaataaca gctccaaaag ctgaagttcc cgtttgtgaa tgaaatctag ctggatcatc
    19621 tgatgcacta ccataaaaag tttgagtaac accgtcaatc atggtattaa cacgcccaaa
    19681 accactcata ccacgaatat ttacttgaac tgtgccttga gcttgatctg tgtttgtgta
    19741 ggttccaggt atactacgca ctatagaatc tatactttgt gtatctgaac ctataccctc
    19801 tcttgtgctt gttgccccag gagttacaaa aggtttttca tcgtttttga tttttgaacc
    19861 tgaaatttca agactatcaa attctaattc ttcagaaaaa gcaaaactag caaaacataa
    19921 acctacagca caaaataaac ttaatttttt cattcctccc ccttataaat caaaacataa
    19981 tcactgtctt ttaaatctat ttctccatag cttaaattca ctacaactat ttttttactg
    20041 cttttaaaat cttgtatatg taaaggaatt cctatttttt tacttgtatg atagcttcca
    20101 gctagcaata aaactttatt tacatgatga accaatacat cagccatacg cctgtctttg
    20161 aattgttgaa tttccaccaa tttatctagt aattctttat tttcttcagg atttagctta
    20221 tggcttaagg atataatgtc aaaaagttgt ttttttactt catttgtggt tgaaacataa
    20281 ccctttaagg gctgagcccc attataaatg cttgtaattt ctgagcgtga aagatttgca
    20341 cctaatattt ttgactttga ataaaaaacc acattgacaa attgctcata atctttccat
    20401 ttccagacct tatcccaatt taatgcatta gtaagttcat tggctttaat ggttttttta
    20461 tttttaaaag ctttatctaa gtgattttgc tctgtgcttg ctaacatttc taaagctaca
    20521 tcaaagttta tattttgaga acttaaattt ccttctaagg cattaaaaat cataacttga
    20581 cttatcttat gtttaacctc atcgtgtttt tcgccaagca gtatcacatc tgcttttagc
    20641 aattctaaaa tcatatcttc aaaagaaatc tttttttgag tatgcgtatc aagtatataa
    20701 aaatctttat tttcttgaag tggagatgat ttttgcaaaa cagcacaagc gctcaacata
    20761 aagcttataa atagaatgct taaaatagta taaaatttca ttattattgt tactttctta
    20821 gtggtttatt tttgatattg aatattaata ttttatatat
//
LOCUS       DAPOLW010000011        20778 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.011, whole genome shotgun sequence.
ACCESSION   DAPOLW010000011 DAPOLW010000000
VERSION     DAPOLW010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20778
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.011"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            89..1435
                     /locus_tag="ROE18_000307"
     CDS             89..1435
                     /locus_tag="ROE18_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate transporter"
                     /protein_id="HDX3650530.1"
                     /translation="MEIFLALLGFFSLGLIVWLLLKDYTTPALAFISVSISVACILLI
                     LERLGFGVGVALGVKGGVFDIKTLVVFIKDGVKSVTDTAALFVFSILFFSVLNASGFF
                     TKILNAFLSKMKANVYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLGIRKT
                     SMLLIITSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWI
                     AKIEIKRGAGAGNLSGINLNIEKSEHHNEKWFWLNLLVAIGVIGLLISGIIPSYICFM
                     IGLAIILPLNYPNLKTAKKVVDRASAGAMLMYITLIGAGILIGVFDKSCIMEKMGVLI
                     LNFVPDYLGAYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIM
                     VIARNCATFISPVVPATLLGCGLAEVNIKDHIKRSFFYIWGISIICLIFAEVAGII"
     gene            1618..3615
                     /locus_tag="ROE18_000308"
     CDS             1618..3615
                     /locus_tag="ROE18_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HDX3650531.1"
                     /translation="MMYKKQNLPELTLRGLILGSILTIIFTASNVYLGLKVGLTFSSS
                     IPAVVISMAVLSLFKTSNILENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQ
                     TFMICLCGGGLGVLFTIPLRRTMVVESKLAYPEGRAAAEILKVANKDQSSKKGKQGIK
                     EIALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAG
                     AIALFVGMFLAWGIFTPYLSNFEFDSTKNAVDLASSVWSSKVRLIGTGAIAIAALWTL
                     IELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVE
                     DANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSI
                     VFLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGHLVGATPWKQQ
                     VALLVGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDASSALAAPQANLMSTIAQGIF
                     HHNIEWGYMAFGVFVGILMIIIDKILKGTQKMSLPPLAVGIGIYLPPAVNIPLVIGGI
                     LKYIVMQHLTKKYAKNSHKEEKLASCEQRGTLFASGLIVGESIFGVIIAGITVFSVSM
                     GGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKKDA"
     gene            3689..4492
                     /locus_tag="ROE18_000309"
     CDS             3689..4492
                     /locus_tag="ROE18_000309"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HDX3650532.1"
                     /translation="MENLYALILGIIEGLTEFLPISSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAVGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVFILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLEFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLGNANSLIPLGIGFITAFI
                     VAVLVIKFFLKFISKFDFIPFGIYRIILGFVFFYLYYSGILNAGSEFKL"
     gene            4623..6431
                     /locus_tag="ROE18_000310"
     CDS             4623..6431
                     /locus_tag="ROE18_000310"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HDX3650533.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ISKYEITKSEALAKFQNDDLKQEVLLRIPDRAVSIYKQGEFEDLCRGPHVPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPISDSHIAYAKEIQRALLELNIDSEVYEKNESLSKKIRTAEKQKLPMILVLGDEEV
                     AKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            6428..6946
                     /locus_tag="ROE18_000311"
     CDS             6428..6946
                     /locus_tag="ROE18_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HDX3650534.1"
                     /translation="MSKEKEVLLNEEIRADEIRCIGDDGKAYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            6985..8076
                     /locus_tag="ROE18_000312"
     CDS             6985..8076
                     /locus_tag="ROE18_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HDX3650535.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNNGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDLLQNIKKYYKNLIQ
                     NLDFQKGFISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIA
                     PLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEF
                     EVMQKDANMLAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPK
                     DWNRSTFNKSKFAQDALFELINDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILE
                     QKYNTFRASRNLKNRNIHLHEQLYILVKN"
     gene            8118..11580
                     /gene="vvfC"
                     /locus_tag="ROE18_000313"
                     /pseudo
     CDS             8118..11580
                     /gene="vvfC"
                     /locus_tag="ROE18_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter serine protease VvfC"
     gene            11661..12689
                     /locus_tag="ROE18_000314"
     CDS             11661..12689
                     /locus_tag="ROE18_000314"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HDX3650536.1"
                     /translation="MKIKVGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTPLNLCFENKNLDELELDLLFLATPHEFSAKLLNENLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQELLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFSSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYNLALHRHTPEIEEHLSY
                     AAKKKITLQFTPHLVSMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SLPQTRWVKSSNFADINFSVDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            12699..13145
                     /locus_tag="ROE18_000315"
     CDS             12699..13145
                     /locus_tag="ROE18_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDX3650537.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     NLSVVAVIDEEIVGSILCGHDGRTGGFYHVCVHKDHRKKGIAHEMTKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            13149..13994
                     /gene="argB"
                     /locus_tag="ROE18_000316"
     CDS             13149..13994
                     /gene="argB"
                     /locus_tag="ROE18_000316"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HDX3650538.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKATIEVASMVL
                     NHINKNLVHSLQNLGVKAIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIIAPIGMDENFNTYNINADDAACAIAKALRAEKLAFLTDTAGLYEDFNDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            13998..15185
                     /locus_tag="ROE18_000317"
     CDS             13998..15185
                     /locus_tag="ROE18_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HDX3650539.1"
                     /translation="MKMDYKEQSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHG
                     STYGGNPLVCAGVNAVFEIFKEEKILENVNKLTLYLEQSLDELINEFDFCKKRKGLGF
                     MQGLSLDKNVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(15205..15834)
                     /locus_tag="ROE18_000318"
     CDS             complement(15205..15834)
                     /locus_tag="ROE18_000318"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HDX3650540.1"
                     /translation="MNAFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TIERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            15923..16471
                     /locus_tag="ROE18_000319"
     CDS             15923..16471
                     /locus_tag="ROE18_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HDX3650541.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESSIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDEKGKLKDAGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDNALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNDEEI
                     SFLKQSALNYVDFKNEFLKDLQ"
     gene            complement(16440..17813)
                     /locus_tag="ROE18_000320"
     CDS             complement(16440..17813)
                     /locus_tag="ROE18_000320"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HDX3650542.1"
                     /translation="MMTSKTSLALLCDFYEFTMSQGYFKNNKKDQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDAEDIEFLRKQGIFDTEFLDFLANFKFKGEIYAMRE
                     GEVIFPNEPLLCIKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFGIQEGGVRIDSGNLLKLSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLKLVYKEKRLLKKSSLNTMQDYTKEQISKLDESFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(17800..18822)
                     /locus_tag="ROE18_000321"
     CDS             complement(17800..18822)
                     /locus_tag="ROE18_000321"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDX3650543.1"
                     /translation="MQRKRIYNPNSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            complement(18825..19247)
                     /locus_tag="ROE18_000322"
     CDS             complement(18825..19247)
                     /locus_tag="ROE18_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HDX3650544.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYIPILYLFYFLLGSKEAFLN
                     NHFITTLCTFLFGLIQAIFLTKKAQSPGLKAYDLYLIDIKTGKKLSFLRILLRYVIFI
                     ISFGLLFGLFVSFVRKDRLNLHDILTQSCIATKSIKKG"
     gene            complement(19248..19856)
                     /gene="pyrE"
                     /locus_tag="ROE18_000323"
     CDS             complement(19248..19856)
                     /gene="pyrE"
                     /locus_tag="ROE18_000323"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HDX3650545.1"
                     /translation="MNLEQIYKDCGAYLEGHFLLSSGKHSQFYLQSAKVLEDPKLAAK
                     LCDELAKIITSYKIEFDSICSPALGGILAGYELARACSKRFIFTERVNKEMTLRRGFE
                     VKKSEKFIICEDIITTGGSALESAKIIESLGGIVVGFAALANRGFCAVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGSKAIKPGSRGN"
     gene            complement(19859..20422)
                     /gene="frr"
                     /locus_tag="ROE18_000324"
     CDS             complement(19859..20422)
                     /gene="frr"
                     /locus_tag="ROE18_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HDX3650546.1"
                     /translation="MIMLNEIFNKQKTQSEKSLEALKKDFTTLRTGKVNTHILDHITV
                     DYYGTQTPLNQVATVLASDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDTYTTKIDESVKNKESELLKV"
     gene            complement(20432..20773)
                     /gene="secG"
                     /locus_tag="ROE18_000325"
     CDS             complement(20432..20773)
                     /gene="secG"
                     /locus_tag="ROE18_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012662194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HDX3650547.1"
                     /translation="MIVIVICIAVLLQKSSSIGLGAYSGSNESLFGAKGPAGFLAKFT
                     FVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPATPNTNSIAPSA
                     PQLPSDVNSSK"
BASE COUNT         7009 a         2690 c         3794 g         7285 t
ORIGIN      
        1 ttaaaaagct ataaatttaa acacatataa gttggagtta aaatatccta ttttattatc
       61 gaataaaaat gatacaaaag gataggatat ggaaattttt ttagctttat tgggtttttt
      121 ctcgttagga ttgatagttt ggcttttgct aaaagattat actactccag cattagcttt
      181 tataagtgta agtattagtg tagcttgtat tttacttatt cttgaacggc ttggttttgg
      241 cgtgggtgta gctttagggg ttaaaggagg tgtttttgat attaaaacat tggttgtttt
      301 tattaaagat ggagtcaaaa gcgtaacgga tacggcagct ttgtttgttt tttctatact
      361 cttttttagt gttttaaatg caagtggttt ttttactaaa attttaaatg catttttatc
      421 aaaaatgaaa gctaatgtat atcaagtttg cattcttact gtttttattg ctgctgctgt
      481 gcatttagat ggttcaggtg cttctacttt tcttattgta atacctgcat tattacctat
      541 ttatgagcgt ttaggtataa gaaagacttc aatgttattg attattactt cggctatggg
      601 ggttatgaat gttattcctt ggggtggtcc tactttaaga gcggctacta atataggaat
      661 ggatgcaaat ttgctttggc accatattat acctattcag attgtaggtt tggtattatc
      721 ccttcttttg gcaatttgga ttgctaagat agaaataaaa agaggtgcag gcgcaggtaa
      781 cttgtctgga ataaatttaa atatagaaaa aagcgaacac cataatgaaa aatggttttg
      841 gttaaattta cttgtagcta ttggagttat tgggctttta attagcggta ttattcctag
      901 ttatatttgc tttatgatag gacttgcaat aattttaccg cttaattatc ctaatttaaa
      961 aacagctaaa aaagttgtag atcgtgcaag tgctggtgca atgcttatgt atattacttt
     1021 aattggtgct gggatattaa taggcgtatt tgataaaagt tgtattatgg agaaaatggg
     1081 tgttttgatt ttaaattttg ttccagatta tttaggcgct tatattcctt tgatggtagg
     1141 gatattggct gttccaatgg caattatttt ttgtacagat tcttattttt atggagtgat
     1201 gcctatagtt ttgagtgtaa ctaaggcttt tggcgctgaa cctttgacta tagctattat
     1261 catggtgata gcaagaaatt gtgcgacatt tatttctcct gttgtgcctg caactttgct
     1321 aggttgtggt ttagcagagg ttaatattaa agatcatatc aaaagaagct ttttttatat
     1381 atggggtata agtattattt gcttgatttt tgctgaggta gctgggataa tataattaaa
     1441 ataaaagaac ttttgatttt tcaatgattg gttcattgtt ttatgatatt tttgagtcaa
     1501 aaatttataa aaatataagc gtttttttgt attattttat tttgctttag agaaaaatta
     1561 taaatttaaa cttataagaa tattttttaa gttgaaagta aattttaaaa cggagaaatg
     1621 atgtacaaaa aacaaaattt accagaactt accttaaggg gtttgatttt gggaagtatt
     1681 ttaactatta tttttacagc ttcaaatgta tatttggggt taaaagtggg acttactttt
     1741 tcatcatcaa ttccagctgt ggtcatctcc atggcggttt tgagtctttt taagacttca
     1801 aatattttag aaaataatat ggttcaaact caagcttcag cagcaggaac tttatcatca
     1861 gttatttttg ttatcccagg gctttttatg tgtgggtatt ggagtgaatt tccactttgg
     1921 caaactttta tgatatgtct ttgtggtggc ggacttggag tgctttttac tataccatta
     1981 agaaggacta tggtggttga aagcaagctt gcttatcctg aaggtagagc cgcagctgaa
     2041 attttaaaag tagccaataa agatcagagt agtaaaaaag gaaaacaagg cattaaagaa
     2101 atagcattag gctcttttat agctgctatt tttagtttgt taagcaatgg ttttaaactc
     2161 gctgcaagtg agagtaattt tgcttttatt tggaataaaa tggcttttgg tttttctatg
     2221 ggatattctt tggcactttt aggggcaggt tatttagttg gtttagcagg tgctatagct
     2281 ctttttgtag gtatgttttt agcttggggt atttttactc cctatctttc aaattttgaa
     2341 ttcgatagta caaaaaatgc cgtagattta gcttctagtg tatggagttc taaagtaagg
     2401 cttataggaa caggagctat tgctatagca gcgctttgga ctttaataga acttttaaaa
     2461 cccgttattg agggtattaa agaaattgtt aaaaatgtta aaattactaa tcaagaaaaa
     2521 aatgaaagaa caaatataga cctttcttta aaaagtattt ttatactttt tgttttaatg
     2581 gttgtgggtt tatttattac tttttatagt tttgttgaag atgctaactt aagtatttat
     2641 tatcaaatgc tattttcatt tgttggaact ttagtttctg ttttaatagg tttttttgtt
     2701 gcagcagctt gcggatatat ggcaggactt gtaggatcct cttctagtcc tatttctgga
     2761 atcggactta ttggtgttat tatttcttct attgtttttt tggttttagg tgtggaactt
     2821 tttcaagatc ctatgctttc taaatttgca gtagcattag ctatttttac tactagtgtt
     2881 attttagcta cagctgctat ttcgaatgat aatttacaag atttaaagac aggacattta
     2941 gtcggagcta ctccttggaa acaacaagtt gctttacttg taggctgtgt ttttggtgct
     3001 ttggctatag ttcctgtttt aaatttgctt tatcaagcct atggttttgt cggagcaatg
     3061 ccaagagaag gtatggatgc ttcatcagct ttagcagcac cgcaagcaaa tttaatgagc
     3121 actatcgccc aaggaatttt tcatcacaat atagagtggg gttatatggc ttttggtgta
     3181 tttgtaggaa ttttaatgat tattatagat aaaattttaa aaggaacaca gaaaatgtct
     3241 ttgccgcctt tagccgttgg aataggtatt taccttcccc ctgctgtaaa tataccttta
     3301 gttataggcg gaattttaaa atatattgta atgcaacact tgactaaaaa atatgcaaaa
     3361 aattctcata aagaagaaaa acttgcaagt tgtgagcaaa gaggcacgct ttttgcttca
     3421 gggcttatag tgggtgaaag tatttttggg gtaattatcg caggaattac tgtattttca
     3481 gtaagtatgg gtggtagtga aaatccttta gctttaaatt tagcaaattt tcatgatagc
     3541 gagcttttcg cacttatctt ttttgtggga gttgtattat atttcattaa gcgtattgtt
     3601 aaaaaagatg cttaattttt ggggttaaaa ccccatttaa tccattctga tataattttt
     3661 cttttgcaat tatcattcaa ggattaaaat ggaaaattta tatgctttaa tacttggaat
     3721 tatagaaggt ctgactgagt ttttacctat ttcttcaaca ggacatatga ttttaggtac
     3781 gactatttta ggtatcgata tagatgagtt ttggaaaagc tttttgatta tcatccagct
     3841 tggttctatt ttggcggtca tttttgtatt ttggcgtaaa ttgtttcaag ggcttgatat
     3901 ttggttaaaa cttgcagttg gattttttcc taccggagtt atagggcttt ttgtggcaaa
     3961 atacttaaat gctttattta atggttgggt tgtggttgga atgctcattt ttggcggtgt
     4021 tgtgtttatt cttatagaac ttgcacataa aaataaacaa tatcgtatca attctttaga
     4081 agaaataagt tttaaacaag ctttttgcat aggtattttt caatctttag ccatgattcc
     4141 tggtacttca agaagtggag caagtattat tggtggactt ttgctagaat ttaatagaaa
     4201 agttgcggct gagtttagtt ttttgcttgc cattccaacg atgattatcg ctacagctta
     4261 tagcatttat aaagagcctg agcttcttgg caatgcaaat tctttaattc ctttaggcat
     4321 aggttttatc actgctttta ttgttgcagt tttagttata aaatttttct taaaatttat
     4381 ttctaaattc gactttatcc cttttggaat ttatcgtatt attttaggat ttgttttctt
     4441 ttatttgtat tatagtggga ttttaaatgc tggaagtgaa tttaagctat aaataaatat
     4501 taaatttatt ctaagatttt tttaaaaata agctgaattt caaaaataat taagtcttag
     4561 aaagttaaaa ttagaacttt ataaacactc acagggtaag tgagcgacaa agggttaaaa
     4621 atatggaaaa agaagttatt gcgtatttgg acaatgagac aataattgac tctcaaagtg
     4681 tgaaaaatac aaatttaaaa gaaatttatt ttgataattc taaagaaagt ttagaagtaa
     4741 tccgtcattc ttgtgcgcat ttaatggcac aggcgattaa gagtttgtat cctgaagcta
     4801 aatttttcgt tggtcctgtt atagaagatg gattttatta tgattttcgt gtggaaagta
     4861 agattggcga agaagatttg gtaaaaattg aaaaaaagat gaaagaactt gctgaagcaa
     4921 agattgaaat ttcaaaatat gaaatcacaa aaagcgaagc tttggctaaa tttcaaaatg
     4981 atgatttaaa acaagaagtt ttattgcgta ttcctgatag agctgtaagt atttataaac
     5041 aaggtgaatt tgaagatttg tgtcgtggtc ctcatgtgcc aaatacgaaa tttttacgct
     5101 tttttaaact cactcgtgtt gcaggagcgt atttgggtgg cgatgaaaaa agagaaatgc
     5161 ttactcgaat ttatggaact gcttttgcag ataaggaaag tttaaaagag tatttaacca
     5221 ttattgaaga agctaaaaaa cgcgatcata gaaagcttgg aacagagctt aagcttttta
     5281 cttttgatga tgagatcgga ggaggtcttc ctatttggtt gagtaatggt gcaagactta
     5341 gatctaaact tgaacatatg ctttataaga tccatcgttt acgtggttat gagcctgtgc
     5401 gtgggcctga acttttaaaa gcagatgcat ggaaaatcag tgggcattat gcaaactata
     5461 aagaaaatat gtattttaca caaattgatg aacaagaata tggcattaag cctatgaact
     5521 gtgtgggaca tattaaaatt tatcaaagtg atgtaagaag ttatcgtgat ttgcctttga
     5581 aattttttga atacggcgtg gtacatcgtc atgaaaaaag tggcgttttg catggacttt
     5641 ttagagtgag agaattcact caagatgatg cacatatttt ttgtatgcca agtcagatta
     5701 aagagcaggt tttagaaatt ttagcttttg tggataattt gatgaaatta tttgatttta
     5761 gctatgaaat ggaaatttca actaaacctg aaaaagccat aggtgatgat gaaatttggg
     5821 aaatagcgac taaggcttta aaagaagctt tagatgaaca aggtttaaaa tacggtattg
     5881 atgaaggtgg cggggctttt tatgggccaa agattgatat taaaatcacc gatgctttaa
     5941 aaagaaagtg gcaatgcgga accatacaag tagattttaa cctgccaagt cgttttaaac
     6001 ttgaatacac tgatagtgat aatgaaaaaa aacaacctgt aatgttgcat cgtgcgattt
     6061 taggttcttt tgaaagattt ataggaattt taaccgagca ttgcgcaggg gagtttccat
     6121 tttttatcgc accaaccgca gtgggtatag tgccgatttc tgattctcat attgcttatg
     6181 cgaaagaaat tcaaagagcc ttgctagaat taaatatcga tagcgaagta tatgagaaaa
     6241 atgagagctt aagtaagaaa attcgcactg ctgaaaaaca aaaattacct atgattttag
     6301 ttttgggcga tgaagaggtg gcaaagcgaa gcgttgcttt aagagataga agagctaaag
     6361 aacaaaaaaa tcttagcttg gacgaattta ttaaattagt taaggagaaa atgagtgagg
     6421 tacatttttg agtaaagaaa aagaagtatt gctcaacgaa gaaattagag cggacgaaat
     6481 cagatgtata ggtgatgatg gcaaagcata tggcattatc agcagtgatg aagctttaga
     6541 gattgcaaat cgtttaggac ttgatcttgt aatgatagct gcagatgcaa agccacctgt
     6601 ttgtaagatt atggattatg gaaaattccg ttatcagcaa gaaaaaaagc aaaaagaagc
     6661 aaagaaaaaa caaaaagtaa tcgatattaa agagattaaa ctttctgtga aaattgctca
     6721 aaatgatata aattacaaag taaaacatgc tttagaattt ttagaacaag gtaagcatgt
     6781 gagatttcgt gtgttcttaa aaggacgtga aatggcaact cctgaagcag gtgtagcttt
     6841 gcttgaaaaa atttggacta tgatagaaaa tgaagctaat cgtgacaaag agccaaattt
     6901 tgaaggtcgt tatgtaaata tgcttgtaac tccaaaaaaa gcttaatcca cttttgtgga
     6961 taaagctttt aaaggtttta aattttgaaa gaaaatcctt cttttttaaa agagcaaatt
     7021 ataacttatc ttggaaataa aagagcactt ttaagttttt taaataatgg ctttaaggta
     7081 gctaaaaaag aacttggtaa agataaattt agtttttgtg atatatttag tggctcaggt
     7141 gttgtaagtc gttttgcaaa agcacactca aattatattt tagccaatga tttagaagat
     7201 tattcaaaac tcatcaatga gtgttatctt gctaataaag acaaagattt acttcaaaat
     7261 ataaaaaagt attataaaaa tttaatccaa aatttagatt ttcaaaaagg ttttatcagt
     7321 gagctttatg ctccaaaaga tgatgatgat attaaaaaaa atgaaagggt tttttatact
     7381 tttaaaaatg ctttatatct tgatactata aggcaaaaaa tcgaaaatga aattccaaaa
     7441 gaattgaggc atttctttat agctcctttg atttatgaag ccagtgttca ttcaaatact
     7501 agcggagttt ttaaaggttt ttataagggt aaggatggca tcggaaaatt tggtggcgaa
     7561 ggacaaaatg cacttaaacg cattaaagga gaaatagagc ttaaaatgcc tattttttca
     7621 aatttttctt gtgaatttga agtgatgcaa aaggatgcaa acatgcttgc aaaagaactt
     7681 gatttttttg atgtagtgta tcttgacccc ccttataatc agcaccctta tagttctaat
     7741 tattttatgc taaatttaat tgcaaattat aaaaaacctg aagaaatttc taaaatcagt
     7801 ggcattccaa aggattggaa ccgcagtact tttaataagt caaaatttgc ccaagatgct
     7861 ttatttgaac ttattaatga tttaaaagca agagtgattt tactttctta taattgtgaa
     7921 ggttttgtaa aaaaagaaat ttttttaaag cgcttaagca ctcttggaaa atgccggatt
     7981 ttagagcaaa aatataatac ttttagagct tctcgcaatc ttaaaaatcg caatatccat
     8041 cttcatgagc aactttatat tttagttaaa aattagtttt tcgtgctaaa attgcactta
     8101 aaaatgagga gggatttatg aaactaaaat tatctttttg tacattaatg gcatttggtt
     8161 tttctaacta tctttttgct tcagctattg atccaaagtt attttcaaga atatcttgat
     8221 tttgccagta ataaaggcaa atttcaagta ggtcaaattg gcttttaaat tttagcaaaa
     8281 aatcctagtc aaaatatctc ttttaatgtg cctatgattg atttttctac ttcaaatcgt
     8341 ggaggaaaat tccaaggaga atttaccaat ataggacaat cttatatagt cagcgcttct
     8401 catatgagta caagtttaaa tactgggaag taaataaaga ctatgtgaaa caaggtagtg
     8461 ttttacactt tggaggggta gcaaatagaa tcgtaagctc aagtgataat tttacttata
     8521 aaaaagaaaa tgtggatttt gctgttttaa aaatgagtaa gattagtctc aataaaagtg
     8581 caaatttgag taaagattta aatcttattg aaaaaattct ggcgatggtg gagatattta
     8641 tgaatacaag gatccatttt gggatagttg tcaaagtgga aaatgtgatt attcaaaagg
     8701 taaaggcaag ctttttgata gttcgggtta tgagtacttt gcaagagagg gaagtggtat
     8761 tgtagcttta ggttttgaag atacaaataa agtacccatt aagatttttg attctaatga
     8821 aatcaattta ggaggttttg tcggtttaac tcctaaaaat actgaagata agcgttttaa
     8881 gttgcaattt cttaattata ccaatgataa aagaaatcct tttacaagtt cttcaatatc
     8941 cggggattct ggaagtagag tttatgttta tgataagatg gataaaaaat ggtatttagt
     9001 aggtgtagta agtacgagta attgtaatgt ccattttact atggatatac ttgtttgcag
     9061 gttgattatg ctttgatcaa tcaagcaaag atcaatgaat tttaaaatgc tcataaagta
     9121 gccataggat ctggaactta tacacttagt agcgatggtt tggtgaaaga tggtaaaaaa
     9181 atagaaaatg taagtttgat ttctaagact aatgtgggtt atgtaagcta taaaaattct
     9241 tttgatgata aaaataattg tgataagaga attgaagaaa tgcaaaatag caaggatttg
     9301 tatttttctc aaaatggaag tataaattta aatagcgatg tggatttagg cgctagtgtt
     9361 ttaaatttga taaaaattca aattggcaaa taacaggcga taaatggctt atacatggtg
     9421 gaatttatgc tgataagggt tcaaggtaga atataatgtt aaaaccaaaa aagatgattt
     9481 tctttataaa atgggtgaag gagagcttgt tgtcaaaagt caaagtgtgg atacaggact
     9541 tagaatgggt gaggaccaag gtaagtcttg agggtgaagg tttaaatttt ggcgaaattt
     9601 atatgaatgg cagaactttg gatttatcag gcttaacatt aaattttgat caaattaaaa
     9661 ctgactctaa taatgttttt atcacaagtt cttaatcagg aatacattta aatttagaaa
     9721 acaagcaaga ttatctttat catggcaata tcttttcaga tgaagctgta acaatgagtg
     9781 ccaatacaga caaagctttg atttttgatg gtaatattta caataaagaa ggtgttttta
     9841 ggacagaaaa tgccaagtta aattttcaag gacatgctag aatacacgct tatgtaagca
     9901 aagaacaagc taaaaaactt caagaacatg gtttaagtgc tttaactaag cctgtaagtt
     9961 ttacacaaga agattgggaa gatagggttt ttgttttaaa agagcttaat ttagaaaaaa
    10021 agcgagtttt atttagggcg taatgtaagc ttaaaagtag aaaaccttaa tgctaaaaat
    10081 tccaaaatag agcttggaag taaaaatttg tggatcgatg aaaaagatgg ggaaaatatt
    10141 attgataaga ctgatgatta ttcttatgga gatgttgtat aaacaggagt tggcaaagaa
    10201 atggcttttg agcaaaagct ttaaaatacc caaaatgcta agatagaaaa ggtttatttt
    10261 agtgtaaatt taaatcttga tcattctgat attactttgc aaaacacatt ttttagtggt
    10321 aatatcaaag gtatcaatga tacgcaaaaa aatcttgcga ttaaagattc tttgcttgag
    10381 tctcatatac aaatgagcaa tcttcaagta gaaaaaagtg ctatttatag gaaagttgat
    10441 gcaaaaaaat taagtgcaaa taatacaata tttaaaatca atgcggattt tgaaaattct
    10501 aaagcagatt atattaattc taaggaaagc acacaaggag taaataatac tttagtatta
    10561 atttttctta ataatcctag taaaaagcgg gtttaaatat cttactagct catttaaaag
    10621 atgaaaataa acatttaaca aaggaatttt ttactatgcc aaatgtgagc aaggttttag
    10681 tacgtatacc ccaaatgttg ttttttctca taatgaggaa aattttgccc agagtggaat
    10741 ttagaaaaaa ttgattctaa gattaaagat gaatattttt ttactaatga taatactcaa
    10801 gctattgtaa aaactaaatc tatacttgct caagctattt taggctccat gataggagtg
    10861 gaataatatg cataaaagaa tgggggaatt acgcaataat ccttatgaaa gtggtgtatg
    10921 gttaagaact tttggatggg gtacgagtga tgagtataat agtggaaaat actttgaaat
    10981 tcaaagcgga catgataaat taaacgagta tttgaatttc gagctttaca gtggagtaag
    11041 gtttttatag tgattttgtt ttagatatat ttattatcaa aatgaaataa atgcaaattt
    11101 tattccagga aatcaaggta gattagatga taatgatggt tcgcataata ttatcttaag
    11161 tgctgagtta ggttatagaa aagcttatga taaattttat cttgagccga gtttggaatt
    11221 tatcagtggt tatgtaggag ctatggatct aaaaggagat attgctagtt taaaacgatt
    11281 ttcttatatt cctttagtcg taaaaacagc atttttcata ggaagtcaaa attaaaattt
    11341 aaattttaga acaggacttg gtttgtatgc ggatccgatt aaagcaggag atcaaatctt
    11401 ggaggatcaa gcaagtcaga gaagatatga aggaaaaaag atcaaagaat gtttataaat
    11461 ttaggaaatg attataagct taacgataaa acacgcttta gttttgaatt tgaaaagaca
    11521 ttttttggcg atttaaatgt agattggagt gcaaatgcta atttaagata tagtttttaa
    11581 ataaaaaata atttaaaaat tgtattttta ttttaagctt ttttgtttat aatacttgct
    11641 tttacattta aaggataaag atgaaaataa aagttgggat tttaggagcg agtggttatg
    11701 cgggaaatga acttgttcgc attttgctta atcatcccaa ggttgaaatt tcttatttgg
    11761 gttcgagttc tagcgtgggg caaaattatc aagatcttta tcctaacacc cctttaaatt
    11821 tatgttttga aaataaaaat ttagatgaac ttgaacttga tcttttgttt ttggctactc
    11881 cgcatgaatt tagtgctaaa cttttaaatg agaatttatt aaaaaagatg aaaatcattg
    11941 atttaagtgc ggattttcgt cttaaaaatc ctaaagatta tgagctttgg tataaattca
    12001 ctcatcctaa tcaagagctt ttgcaaaatg cggtttatgg actttgtgag ctttataaag
    12061 aagagataaa aaaagcaagt ttagtggcaa atccaggttg ttataccact tgttccatct
    12121 taagtcttta tccgcttttt aaagaaaaga tcattgattt tagctcagtt attattgatg
    12181 caaaaagtgg agtaagtgga gcaggaagaa gtgcaaaggt ggaaaatctt ttctgtgaag
    12241 ttaatgaaaa tatcaaagct tataatttag ctttgcatcg ccatactcct gaaattgaag
    12301 agcatttaag ctatgcagcc aaaaagaaaa tcactctaca atttacccct catcttgtgt
    12361 ctatgcaaag aggaatttta atcagtgctt atgcaaattt aaaagaggat ttgcaagaac
    12421 aagatatacg cgatatttat acaaaatact atcaaaacaa taaattcata aggcttttac
    12481 cgccgcagtc acttccgcag actcggtggg ttaaatcaag caattttgcg gatataaatt
    12541 ttagtgtaga tcaacgcaca aagcgtgtta ttgtgcttgg tgctattgat aatttaatca
    12601 aaggtgcagc aggacaagct gttcaaaata tgaatttaat gtttgatttt gatgaagatg
    12661 aaggacttaa attctttgca aatttgtaaa ggataaaaat gttaatacga gctatgcaaa
    12721 aaagcgatta tgaagccgtt tataagcttt ggtgtgagat aaaaggcttt gggataagaa
    12781 gcattgatga tagcaaagaa aatatagaaa attttttaga tagaaaccca aatcttagcg
    12841 ttgtagcagt gattgatgaa gaaattgtag gaagtatact ttgcgggcat gatggacgca
    12901 caggaggatt ttatcatgta tgtgtacata aagatcatag aaaaaagggc atagcgcacg
    12961 agatgacaaa attttgtctt gaggctttaa aagctcaaaa aatcaataaa atcgccttaa
    13021 tcgcttttaa aaacaatgat ttaggcaatg agttttggaa acattatggt tttactttaa
    13081 gagaagatgc gaattattac gatctttctt taaatgagta taatcaaact agctttaatg
    13141 cttaaggaat gatcatgcaa aaatatttag aaaaagctaa tgtcttaatc gaagctttgc
    13201 cttatatacg caaatttaat tctaagatta tacttataaa atacggcgga tcagctatgg
    13261 aaaatgaaga gctaaagcat tgtgtgatgc aagatatagc tcttttaaaa ctcgtgggtt
    13321 taaagcctat tattgtacat ggtgggggaa aagatatttc tgctatgtgt gaaaaattag
    13381 gcgtaaagag tgagtttaaa aacggtctta gggttagtga taaagccact attgaagtag
    13441 ccagcatggt tttaaatcat atcaataaaa atttagtcca tagtttgcaa aatttaggag
    13501 ttaaagccat agggctttgt ggtaaagatg gcgcgctttt agaatgtgtg aaaaaagatg
    13561 aaaatttagc ttttgttggc acgatacaaa aggtaaattc gaaaatttta gaagagcttt
    13621 tggaaaaaga ttttttacct atcattgctc ctattggcat ggatgagaat tttaatactt
    13681 ataatatcaa cgctgatgac gcagcttgtg cgatcgctaa ggctttaagg gctgaaaaac
    13741 ttgctttttt aactgatact gcagggcttt atgaggattt taatgataaa aattctttaa
    13801 tttctaaaat cagccttgaa caggctaaaa ttttagctcc taaaatagaa ggtggtatgc
    13861 atgtaaaatt aaaatcttgc attgatgctt gtgaaaatgg agtcaaaaag gtacatattt
    13921 tagatgggcg tgtgaaacat tctttgttgc ttgagttttt taccgatgaa ggtataggca
    13981 ctttggtggg ttaaaggatg aaaatggatt ataaagaaca aagtcatatt atccctacct
    14041 ataagcgttt tgatatagtt ttagaaaaag ggcagggggt ttatcttttt gacgataagg
    14101 ctaaaaaata tcttgatttt tcaagtggca taggtgtttg tgctttagga tataatcatg
    14161 ctaaatttaa tgctaaaatc aaagcgcaag tggataagct tttgcatact agcaatttat
    14221 attataatga aaatatagct gctgcagcta aaaatttagc caaagctagt gctttagagc
    14281 gtgttttttt tacaaattct ggtacagaaa gtatagaagg agcgatgaaa acagctagaa
    14341 aatacgcctt taacaaaggt gttaagggtg gacaatttat cgcttttaag cattcttttc
    14401 atgggcgtac tttaggggct ttatcgctta ctgctaatga aaaatatcaa aagcctttta
    14461 aacctttaat ttcaggggtt aaatttgcaa aatataatga tatttcaagc gttgaaaaac
    14521 tggtgaatga aaaaacttgt gccattatct tagaaagcgt gcaaggagaa ggtgggataa
    14581 atcctgcaaa taaagatttt tacaaagcct taagaaagct ttgcgatgaa aaagatatat
    14641 tattaatcgc tgatgaaatt caatgtggca tgggtagaag tggaaaattt tttgcctatg
    14701 agcacgcaca aattttgcct gatatcatga cttcagctaa ggccttaggt tgtgggctta
    14761 gtgtgggtgc ttttgtaata aatcaaaagg tagcaagcaa ttctttagaa gcaggcgatc
    14821 atggtagtac ttatggtgga aatcctttag tttgtgcagg agtgaatgca gtttttgaaa
    14881 tttttaaaga agaaaaaatt ttagaaaatg tcaataaact cacgctttat ttagagcaaa
    14941 gtttagatga gttgataaat gaatttgatt tttgtaaaaa acgcaaaggc ttagggttta
    15001 tgcaagggct gagtcttgat aaaaatgtaa aagtagctaa ggtcattcaa aaatgccaag
    15061 aaaatgcact tttactgata agttgcgggg agaatgattt gagattttta cctcctttga
    15121 ttttgcaaaa agaacatatt gatgaaatga gtgaaaagtt aagaaaggct ctaaagagtt
    15181 tttgataaat tttgtaaaaa aagtttattc tttcccatct actataggca caaataaaca
    15241 ttcttctaaa atttcttttt gtaaatttgt gccatttttt ctaaggcgtg tgatgaattg
    15301 tttgccattg tgtaaaatag gagcaactaa aataccatca tcgcttaatt gatcgagtaa
    15361 aatttcagga atttgtgtcg cataagcaga aaataaaatc ctatcataag gagcataatt
    15421 tttccagcca ttttgtccat catcaaattt tacattgata ttaaaaagtt ctaattctct
    15481 gaaagtttga gcggcttttt tggctaaatt ttctatgcgt tctatggtaa aaacacgcct
    15541 tatgactttg cttaaaatcg cagcttgata gccacttcca caacctatct ctaaaatact
    15601 atcagcattt ttaaaatcta aagccatagt cattttagct acagttaaag gtgaactaat
    15661 ccattgagaa tttgctaaag gcaaagcatc aaggcgataa gcatgggctt ttaaaggaga
    15721 aaaaatttca cgcggaattt gacaaaaagc attaaaaagc tcttcattga taaaaacttt
    15781 ttgtgcaatt tcttcagcca tattttgaca tcttttttgt tcaaatgcgt tcattacttc
    15841 tcctataaat ttaaataaaa attgtaacta aaaaagttga aatagagtta aacttagcta
    15901 tacttaaata aaaaggaaaa aaatgcttat aaaatttaaa aatcatagtc ccaaactagg
    15961 tcaaaatgtt tttgttgcag agggcgctaa aatcatagga gaaatagaaa taggagatga
    16021 aagtagtatt tggtttaatt gtgttttaag agccgatgtt aattttataa aaattggcaa
    16081 aagaaccaat attcaagatc ttagcacggt acatgtttgg catagggaat ttgatgaaaa
    16141 aggaaagtta aaagatgccg gttttcctac aataatagga gatgatgtaa ctataggaca
    16201 taattgcgtt atccatgcct gtgtgataaa aaatcgtgtt ttaatcggaa tgaatgctgt
    16261 tatcatggat aatgctttga tagaagaaga tagcatagtg ggtgctggaa gcgttgtaac
    16321 aaagggtaaa aaatttccgc cacgctcttt gatacttgga aatcctgcaa aatttgtgcg
    16381 tgaattaaac gatgaagaaa taagctttct aaaacaatcc gctttaaatt atgtggattt
    16441 taaaaacgag tttttaaaag atcttcagtg atattttgaa gtttaggcga gagttttact
    16501 tcaaatttca caaaacgatc aagatctaaa aaactctcat cgagttttga aatttgctct
    16561 tttgtataat cttgcatagt atttaaagat gactttttaa gaagtctttt ttctttgtag
    16621 actaatttta aaagttcttt gcgttctaaa ttttcatctt gatttgggtt ttcgtcaaaa
    16681 acataaagtt catcaaaaag gattttttgc gtgtttttat cataaaccct aaaaagcttt
    16741 ttaaaatgag gtagggttga tttttcgtta ttttcgctga ttttgatttt aggttttatg
    16801 ccttgatctt ctaaggctgc gagtttataa acgcaactaa aaatagggtc acttgaagca
    16861 gtgatcaatc tttcacctac accaaagata tcaataggtg cattttgttc tttgagtttt
    16921 ttaatgctcc attcatcaag tgcgttagaa actatgattt tacatttttg aagtcctgct
    16981 tgatcaagtt cttgtctgat tttcaaactc aacttaagta aatttccaga atctattctc
    17041 acgccgcctt cttgaatacc aaattcttta aaaactttaa tcgcattttt aagtccgcta
    17101 tttagacaat cataagtatc aatcaaaaaa acaggatttt ttggataaat tttcacataa
    17161 gctttaaaag cttcaagttc attttcaaac atttgcaccc aagaatgtgc catagttcca
    17221 ttgataggga tattataaat ttttcctgct aaagtacaag cacttcctat gcaacctcct
    17281 ataaaagctg ctcttgctcc ttttaaggct gcttcacttc cttgtgctct gcgtgaacca
    17341 aattctaaaa ttttactgtc tttagctgca cgcacgatac gattggtttt ggtagcaata
    17401 aggctttggt ggtttaaact taaaagtaaa aaagtttcta aaagctgtgc ttctatggtt
    17461 gtagctttaa tacatagcaa aggttcgttt ggaaaaatca cttctccttc acgcatagca
    17521 taaatttcac ccttaaattt aaagttagct aaaaaatcta aaaattctgt atcaaaaata
    17581 ccttgttttc ttaaaaattc tatatcttct gcatcaaaac tcaaattttc aacaaagtct
    17641 aaaatatctt caagacctgc aaaaatagca aaagatcctg aatctggaat ttttctaaaa
    17701 aatatatcaa aataacaaat ttgatctttt ttattgtttt tgaaatagcc ttgagacatt
    17761 gtaaattcat aaaaatcaca aagcaaggct aaagaagttt tagaagtcat caaagcttat
    17821 actaccctta gaataattcg ttactttact ttcaaagaaa ttgctctttt gatcgttaaa
    17881 ttttgaaaaa tcatctaccc atttaatagg atgttttgca ttgtataact tatctaaatt
    17941 gatcgcgctt aatctttgat ctacaagata atggatatat tcttctatga tatcatcagt
    18001 aaagcccatg atttgatttt gagtgatgta tttaccccat ttgatctcaa gatctccagc
    18061 ttttttaaac atatcataaa ttttattgat attttcatca tggaacaaat caggtctttc
    18121 tttgcgtact gaattgatca tattttgaaa taataaaaga tgtgtgattt catctctttg
    18181 gataaagcgg atcatttgtg ctgaacctag catttttcct gcacgtgcaa gtgcgtaaat
    18241 agcagtaaaa ccactataaa aatatactcc ttctaaaatt tgatttgcta ccatagccaa
    18301 aagaagttta ttatcatcta catcgcctgc taattcttca taaatgcttg aaataaagtc
    18361 atttttttca cgcaaagttt catcatgctt ttccatttca taaatcaaat ctgtattatc
    18421 gcaaatcgct tctaccataa cagcgtaaga ttttgaatgg tttgcctctt cataagcttg
    18481 gcgtgccaaa accgcattga tttcaggagc tgtgatgtaa gggttgatat tatctgctaa
    18541 attattggtt tgaaaactat ccatagaaat aagctgactc caaaccaaat catacattct
    18601 tttttcacct acagttaaat tacagcgata atcaagtgca tctttagttg tatccacttc
    18661 ttttggaaac caagtatttg cctccattaa atcccaaagt tttaaagccc aggtatattt
    18721 tgccttagtg aaatttaaaa ttccatgtgg gttaccatca aaaattttac gatctcctag
    18781 ggtttcgttt gagtttggat tgtaaattct ttttctttgc atttttaacc tttctttatg
    18841 cttttagtag ctatacaact ttgagttaaa atatcgtgta aatttaaacg atcttttctt
    18901 acaaaactga caaataaacc aaagagtaag ccaaaactta taataaatat cacatatctt
    18961 agtaaaattc taagaaaact tagtttcttt cccgttttta tatcaataag atataaatca
    19021 tatgctttaa gacctgggct ttgtgccttt tttgttaaaa aaatagcttg aatcaagcca
    19081 aataaaaaag tacataaagt tgtgataaaa tggttgttta aaaaagcttc tttagagcct
    19141 aatagaaaat aaaataaata caaaatagga atataaataa gaaaaatatc tataagcaaa
    19201 gctctaaatc ttagccatct agagctaatt tttgctttag ttttcattta atttccacga
    19261 cttcctggtt ttatagcttt actccctttt ttacaaagtg gacaatttgt ttcatcgtaa
    19321 atttcaaatt caaaatttcc tagagtaaag agtggtaaat tttcaggtaa tttcgcatta
    19381 tcttttcttg gagattttaa attttctact gcacaaaaac cacgatttgc caatgctgca
    19441 aaacctacaa caatgccacc taaactttca atgatttttg cactctctaa agcactacca
    19501 cctgtagtaa tgatatcttc acaaattata aatttttcac tcttttttac ctcaaaacca
    19561 cgtcttaaag tcatttcttt atttactctt tcggtaaaga taaaacgttt actacaagct
    19621 cttgcaagct cataacctgc taaaattcca cctaaagcag gggaacaaat gctatcaaat
    19681 tctatcttat agcttgtaat aatctttgca agttcatcac aaagttttgc tgctaatttt
    19741 ggatcctcta aaacttttgc actttgaaga taaaattgcg aatgtttacc tgaacttagt
    19801 aaaaaatgcc cttctaaata agcaccacaa tctttataaa tttgctctaa attcatcgtt
    19861 aaacctttaa aagttcactt tctttgtttt ttacactctc atcaattttt gttgtatagg
    19921 tgtcggtaag tttttgcact tcatcataag ctttttttgc ttcatcttcg cttattgcct
    19981 tatctttttc tagtttttta actgcatcgt tagcatcttt gcgtatattt cttatagaaa
    20041 cttttgcctt ttcacccata gctttagctt gttttacatt ttcttctctt tgctctctag
    20101 tcatcggagg gaaaaataat tttacacttt cgccgtcatt gtttggattt acaccgatat
    20161 ttgcagctgc aatagcgctt tctatggttt ttagtaaagg tttttcccaa ggagtgatgc
    20221 taatagttga agcatcactt gctaaaacag ttgctacttg atttaaagga gtttgagttc
    20281 cataataatc cactgtaata tgatctaaaa tatgggtatt aacttttcca gttcttaaag
    20341 tggtgaagtc tttttttaag gcttctaaag atttttcact ttgggttttt tgtttgttaa
    20401 aaatttcatt tagcattatc atttccttta attatttact tgagttaaca tcgcttggaa
    20461 gttgtggtgc acttggagcg atagaatttg tgtttggggt agcaggcaca ataggagcac
    20521 ttggaatagt agtattgttg ttttctactt taattttctc tgctagagag tctttgctag
    20581 ctttattgta taaataacca agaccaatag tatttgcaat aagtaaaatt cccataacaa
    20641 aggtaaattt tgccaaaaat ccagctggtc ctttggcgcc aaataaactt tcattgcttc
    20701 cactataagc tccaagtcct atacttgaac ttttttgaag taaaactgct atacaaataa
    20761 ctataacgat gataaatt
//
LOCUS       DAPOLW010000012        20559 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.012, whole genome shotgun sequence.
ACCESSION   DAPOLW010000012 DAPOLW010000000
VERSION     DAPOLW010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20559)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20559)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20559
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.012"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..374)
                     /locus_tag="ROE18_000326"
     CDS             complement(<1..374)
                     /locus_tag="ROE18_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDX3650548.1"
                     /translation="MLRKADIKDLNACLSLFEQSVKTLCAKDYTKDQICAWIKIDRQQ
                     WEEKFKYDEIFVYEKRGKIASFISVKQEQKLLDLLFTHPDFVRQGLAQNLLDFILKTY
                     LHNEIYTFASLSAKDFFLKNGF"
     gene            complement(358..1017)
                     /locus_tag="ROE18_000327"
     CDS             complement(358..1017)
                     /locus_tag="ROE18_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HDX3650549.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFKNLTLIDADKFEITNQNRQIHSENIGEEKAKVFERIYKVKGIVSKIDENFLKNFD
                     LSEFDLIIDAIDDIPAKVALAHLIDFKKQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAKK
                     S"
     gene            complement(1007..1783)
                     /gene="surE"
                     /locus_tag="ROE18_000328"
     CDS             complement(1007..1783)
                     /gene="surE"
                     /locus_tag="ROE18_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HDX3650550.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            1963..3331
                     /locus_tag="ROE18_000329"
                     /pseudo
     CDS             1963..3331
                     /locus_tag="ROE18_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006639.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            3473..4225
                     /gene="peb3"
                     /locus_tag="ROE18_000330"
     CDS             3473..4225
                     /gene="peb3"
                     /locus_tag="ROE18_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HDX3650551.1"
                     /translation="MKKIITLFGACALAFSMANADVNLYGPGGPHTALKDIANKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVI
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            4322..5416
                     /locus_tag="ROE18_000331"
     CDS             4322..5416
                     /locus_tag="ROE18_000331"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HDX3650552.1"
                     /translation="MKTFLVCALEPSANLHLKEVLKAYKKDFGEFELHGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKKAIKELANLSFTQKINGILCIDSPAFNI
                     PFAKALKKAGSKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFNKSTYI
                     GHPLLDEIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIRRLMPIFKELSQKFKGK
                     KILCVPSFNLEKLEVYGDISEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFVL
                     AYKAKAIDIFIAKLFVKLKHIGLANIFCDFAGKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILNEI"
     gene            5428..5913
                     /gene="greA"
                     /locus_tag="ROE18_000332"
     CDS             5428..5913
                     /gene="greA"
                     /locus_tag="ROE18_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HDX3650553.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGNLDKGYISIASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            6064..6681
                     /locus_tag="ROE18_000333"
     CDS             6064..6681
                     /locus_tag="ROE18_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HDX3650554.1"
                     /translation="MLIGEISATHEFAKPYIELLEELALKIEIIYLEGNHDFNLSCFF
                     KRVKIFNLQEQPIKLNLHTSKGNNLVLNSAFIKLAHGDIFLPPLLQFTLKTLRNHYLL
                     VFLNFLNIITRNFISNKILQNQNKKNLFYQIKDFENLAKKRYEKYENLGFWVCEGHYH
                     QNHQINKENIKYLNLASFAYERSFFVVEYQQEIKFREQKLRGQNV"
     gene            6674..7630
                     /locus_tag="ROE18_000334"
     CDS             6674..7630
                     /locus_tag="ROE18_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HDX3650555.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQIYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIVFNSSLSN
                     EFMNEKGVQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            7634..9943
                     /locus_tag="ROE18_000335"
     CDS             7634..9943
                     /locus_tag="ROE18_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDX3650556.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVVATDSNEKSIPQAELEAPKQEIATPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNAAPKPTNNTANKPTESGE
                     KKVPASGSNASSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            9948..10469
                     /locus_tag="ROE18_000336"
     CDS             9948..10469
                     /locus_tag="ROE18_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-binding chemotaxis protein CheW"
                     /protein_id="HDX3650557.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            10469..11092
                     /gene="serB"
                     /locus_tag="ROE18_000337"
     CDS             10469..11092
                     /gene="serB"
                     /locus_tag="ROE18_000337"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HDX3650558.1"
                     /translation="MIKLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMTGEL
                     DFFESLQKRVSFLKGMSYKKVLELSSTLPLMRGAHELIQYLKSKNIQIVIFSGGFHEG
                     INPAMQKLGINLGFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKSFLNLKTDEVM
                     CVGDGANDLAMFNESGLKIAFCAKEILRSQADICIDIKDLKEIIKVI"
     gene            11092..12069
                     /locus_tag="ROE18_000338"
     CDS             11092..12069
                     /locus_tag="ROE18_000338"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HDX3650559.1"
                     /translation="MKNFSLWCDFIENSFLDNEFLNLLSHGINGATSNPAIFKNAILN
                     SPIYKDKILKLKGKKTKDIYEELAISDIQKAADKLAPLFYQKNDGFISIEIDPRLHDN
                     TTLSLGEAKRLYSAISKENVMIKIPATKASYEVMYELMKNGISVNATLIFSLEQSQKC
                     FEALNAGLVEFRKNNIALKEQNTRTPQAVVSIFVSRFDRLLNPKAKEQNRIGILNANL
                     AYNNIYSKNEPNIRALFASTGVKGDDLPKDYYIKELLFENSVNTAPLDAIEAFKGKMD
                     FKKPLMNFEIYTELNQIISQSEREKACNDLLSDGIEQFCIAFEDILKAL"
     gene            complement(12070..12492)
                     /locus_tag="ROE18_000339"
     CDS             complement(12070..12492)
                     /locus_tag="ROE18_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HDX3650560.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFCELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEKWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(12489..15758)
                     /gene="carB"
                     /locus_tag="ROE18_000340"
     CDS             complement(12489..15758)
                     /gene="carB"
                     /locus_tag="ROE18_000340"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HDX3650561.1"
                     /translation="MPKRTDIKSILLIGSGPIVIGQACEFDYSGTQAAKTLKELGYRV
                     VLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAYNYDEALKAVDEI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELTNTALALSPIHEILIEESLLGWKEYEMEV
                     IRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAINPKNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEDRNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYVRMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDAKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNNELYMIEVNPRASRTIPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIHLVIN
                     TSDSHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
     gene            complement(16019..16768)
                     /gene="mreC"
                     /locus_tag="ROE18_000341"
     CDS             complement(16019..16768)
                     /gene="mreC"
                     /locus_tag="ROE18_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HDX3650562.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGLIKQNVLRVNDFVIGNFYNIK
                     DYLGEKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILEDQNSTKYLPQVS
                     LTRVISYVQLNDYKKLWLDWSKIPVGKNRGLIYQGYTAGIAINKNGRAMALLQGDDQC
                     VFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINTGDEILTSGLDNIFFSDIPVGIVN
                     RVNDEDMYQSVEVKPYVKISIPAYLYVVDNL"
     gene            complement(16758..17798)
                     /locus_tag="ROE18_000342"
     CDS             complement(16758..17798)
                     /locus_tag="ROE18_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HDX3650563.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGASLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGLDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            complement(17810..19033)
                     /gene="clpX"
                     /locus_tag="ROE18_000343"
     CDS             complement(17810..19033)
                     /gene="clpX"
                     /locus_tag="ROE18_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HDX3650564.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKDYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            complement(19026..19817)
                     /gene="lpxA"
                     /locus_tag="ROE18_000344"
     CDS             complement(19026..19817)
                     /gene="lpxA"
                     /locus_tag="ROE18_000344"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HDX3650565.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGIRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            complement(19817..20257)
                     /gene="fabZ"
                     /locus_tag="ROE18_000345"
     CDS             complement(19817..20257)
                     /gene="fabZ"
                     /locus_tag="ROE18_000345"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HDX3650566.1"
                     /translation="MIDVMQIQEILPHRYPFLLVDKITELKVKEVVLGYKNISISDHV
                     FMGHFPGHPIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVR
                     PGDRLDYEMSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
     gene            complement(20351..>20559)
                     /locus_tag="ROE18_000346"
     CDS             complement(20351..>20559)
                     /locus_tag="ROE18_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="diacylglucosamine hydrolase like protein"
                     /protein_id="HDX3650567.1"
                     /translation="FFKNKWKNFEDFLKKPLSVQAEIKWRNKLFGTYNLSPIIILENI
                     LPSRYEVIAKSEIYHDNQEVLVKI"
BASE COUNT         7010 a         3463 c         3134 g         6952 t
ORIGIN      
        1 tcaaaaccat tttttaagaa aaaatcttta gcacttaagg atgcgaaagt gtaaatttca
       61 ttatgcaaat aagtttttaa aataaaatca agtaaatttt gtgctaaacc ttgtctaaca
      121 aaatcaggat gagtaaaaag caaatcaagc aatttctgct cttgtttaac acttataaaa
      181 cttgcgattt ttcctctttt ttcatagaca aagatctcat catatttaaa tttttcttcc
      241 cattgttgtc tatcaatttt aatccaagca caaatttgat cttttgtata atccttagca
      301 caaagtgttt ttacgctttg ctcaaaaagc gacaaacaag catttaaatc tttaatatca
      361 gcttttctta gcaagaactt ttcttaatgc caagctggct agggctaaac caaaagatgc
      421 agtcacaccc ataaaagatc caagatcttt acaatgcgct tcctcatctg aaaataccac
      481 atcaaaattt cccttaaagc ctgattttct aagctcataa cgaaattttt tcgctaaagc
      541 atcgccgtga gttttaaaaa tacttgtagt tttaatgcgt gttggatcaa gctttctagc
      601 tccacctgtt gaggagataa aaatttgttt tttaaaatct ataagatgag ccaaagctac
      661 ttttgcagga atatcatcaa tggcatctat gataagatca aactcgctta aatcaaaatt
      721 ttttaaaaaa ttttcatcga ttttactgac tataccttta accttataaa ttctttcaaa
      781 tactttagcc ttttcttcgc ctatattttc gctatgaatt tggcgatttt gattagtgat
      841 ttcaaattta tccgcatcga ttaaagtaag gtttttaaaa ccactacgat aaagcgcatc
      901 aacgcaaatt ccacccactc caccaagtcc gcaaaccaaa acttttgttt gtgaaatttt
      961 ttgaaatttt tcttctccaa ctagccattt tatacgtgta aatctatcat tcatcatttg
     1021 cctttaacca ttttttaact tttttcattc tttcataagc tgtaagatcc agcattatag
     1081 gtgttattgt agcgtagcct tttttaagta aggcaatatc gctatttttc tcatcttcaa
     1141 agtctaaatt cgccgctgca agccaatagt actctactcc tctcggattg acatttgaat
     1201 gggcttcaaa attataaacc cttttgcctg ctttacaaat tttaatgcct ttgatttttg
     1261 attttgcagg aaaattgata tttaaaaatt cttttttttc caaaggaaaa cctttatcaa
     1321 aaatattttg aatgattttt ttggtaattt gtaaagcatt tttatagtct agttcttttt
     1381 cgcttttttt ataaaattga gaaagagcga tagcaggaat tccttgtaaa accgcctcca
     1441 tagctcctgc gcaagttcct gagtaggtaa tatcctcgcc tacattagca cctttattaa
     1501 tcccacttat tacaagatca ggcaaacgct ttttgtataa agcatgcaaa gcaagataaa
     1561 cacaatctgc tggagtgcca tcatcaagtt tgtaaaatct ttttcccact ttaacaaaac
     1621 gcaaaggttt ggttagggtt atagagtgcg aacaagctga tttttcacta gcaggagcta
     1681 ctatggtgat cttggcttta aattcttttg ttaacatctt aatgagtttt ttaagtcctt
     1741 cgctttcata accatcgtca ttagtgataa gaatttcttt cattgtcttc cttgcaaaag
     1801 ataaaaatct ggattttaac atattttttt aaagcttcat agtataaaat tttaattttt
     1861 aaattatata aatttcgtat tatttttaat tattttttta ttttatatcg attaacatta
     1921 tttaaactat aaaaatataa agttagtaag gatggtttaa atatgtttga ttttttcaaa
     1981 cctaaggcaa aagctattaa atttcctctt taggaaattt tacctagata ttacaaaatg
     2041 agaacttgga gtttaagtgg ggtttttata ggatatatgg gatattatct tgtgcgaaat
     2101 aatatcactc tttcaactcc atttatacaa aatcaactta atctcagtaa atcagacatc
     2161 ggaacaatca caggctcaat gcttatagct tacgggatta gcaagggtgc aatgagcgtt
     2221 ataagcgaca aagctgatcc taaaaaatca tggctttagg tcttatttta tgtgctcttg
     2281 taaatgtttt acttggtttt tcaaattctt tttacgctta tgtaggtttt gttatcgcgc
     2341 ttggggtttt tcaaggtatg ggggtaggtc cttcttttat cactcttgca aactggtatc
     2401 ctaaaaaaga gcggggaatt tacacggccg tttggaatat ctcacataat ataggaggcg
     2461 ggatagttgc tcctatagtt tcgctttcag gttttgcttt ggcagcatta ttgggtgtga
     2521 gtatggcaaa ttttaacgaa acatattggc acatgaatca tttttatact cctgctgctt
     2581 gtgcagttat cattagtctt tatgcgcttt atgcagttaa aggaaatcct aaaaatgaag
     2641 gtttggttga tattactgaa atcaatgaaa tgcgagggat taaaacagaa gaaatcaaag
     2701 ctatagaaac tccaaattta agcagttttg aaatttttta tcattatgta cttaaaaaca
     2761 aaaatgcttg gtatgtggct tggatggata cttttgttta tatggtgcgt tttgggctta
     2821 tttcttggct tcctatttac ttgctagaaa caaaaggctt taataaagaa caaataggta
     2881 ttgccttttg gctttttgaa tgggctgcta taccttctac tttacttgca ggatatattt
     2941 cagataaaat ttttaaaggc tatagaatgc ctcctgctat aggcgccatg gtgattattt
     3001 tctttatgat tattggatat tttacttcaa ataatcttta tatggttatt ttctttgcag
     3061 ctatggcggg gtgtttagtc tatataccac aatttttagc aagtatgcaa actatggaag
     3121 tcgttcctgc ttttgcagta ggatcttgtg taggacttca tggctttatg agttatgtag
     3181 tcggcgcttc acttggaaca aaagcatagg ttgggctgtg gattactatg gtagttggaa
     3241 tgctggtctt atcatgctcc ttagtgcttg tattctttgt atactttgtt ctactttatg
     3301 tcattttagc gctaaaaaga agcatcaata acaattttaa cttttgcttg caaaaatacc
     3361 aagcaaaagt tagattttaa taatattttt gttacattat aactatttat taacatacaa
     3421 tttctaaaat cttaccttca atcaataaaa atttatcata aaaggaaata ctatgaaaaa
     3481 aattattact ttatttggtg catgtgcctt agcttttagt atggcaaatg cagatgtaaa
     3541 cctttacgga ccaggtggcc cacacacggc cttaaaagat atagcaaaca aatatagcga
     3601 aaaaacaggc gttaaagtaa atgtaaattt tggccctcaa gcgacttggt ttgaaaaggc
     3661 taaaaaagat gcagatattt tatttggcgc ttcagatcaa tcggctttag ctatagcgag
     3721 tgattttgga aaagatttta atgtgagtaa aatcaagcct ttatatttta gagaagccat
     3781 catacttact caaaaaggca atcctttaaa aatcaaaggt ttaaaagatt tggctaataa
     3841 aaaagtaaga atcgttgtgc ctgaaggtgc tggaaagagc aatacttctg gaactggagt
     3901 ttgggaagat atgataggta gaactcaaga tataaaaacc atacaaaatt ttagaaacaa
     3961 tatcgtggcc tttgttccaa atagtggaag tgcaagaaag cttttcgcac aagatcaagc
     4021 cgatgcttgg atcacttgga ttgactggtc aaaaagcaat cctgacatag gaactgccgt
     4081 agctatagaa aaagatttgg ttgtttatag aacttttaat gtgatagcta aagaaggtgc
     4141 gagcaaagaa acacaagatt ttattgctta tttaagttct aaggaagcta aagaaatttt
     4201 taaaaaatac ggctggagag aataaacctt catacacgct ttttagcgtg tattcttgca
     4261 taacttcttt taattaagcc aaaataagat aaaatgttta aaatattgat aaggaaattt
     4321 tttgaaaacc tttttagttt gtgctttaga gccttcagca aatttgcatt taaaagaagt
     4381 tttaaaagct tataaaaaag attttggtga atttgaactt catgggattt atgatgagag
     4441 tttatgcaaa gaatttgatt taaattctaa accactttat agctcacatg aatttagtgc
     4501 tatgggtttt atagaagttt tacctttgat tttcaaagca aaaaaagcta taaaagaact
     4561 tgcaaattta agctttactc aaaaaataaa tgggatttta tgtatagatt cacccgcttt
     4621 taacatacct tttgctaaag ctttaaaaaa agcaggcagt aaaattccac gcatttatta
     4681 tatcttgcct caagtttggg cgtggaaaaa aggtcgcata cctatcatag aaagtcattt
     4741 tgatatttta gcttctattt tgccctttga taatcaattt tttaacaaaa gcacctatat
     4801 aggccatccg cttttagatg agataaaaga atttaaaaat caagaagaca ttaatcatac
     4861 attttcaaaa aaagatgatg aaaaaactat agccttttta ccaggttcaa ggcgtagtga
     4921 aattaggcgt ttaatgccta tttttaaaga actttctcaa aaatttaagg gtaaaaaaat
     4981 tctttgcgtt ccctcattta atcttgaaaa attagaagtt tatggtgata ttagcgaatt
     5041 taagatagaa agtaacactc caaaagtgct taaaaaagct gattttgcct ttatttgtag
     5101 tggaacagct actttagaag cagctttagt gggaactcct tttgttcttg cttataaggc
     5161 aaaggctatc gatattttta tcgcaaaact ttttgtaaaa ttaaaacata taggacttgc
     5221 aaatattttt tgtgatttcg ctggaaaaga agctttaaat cctgaatttt tacaagataa
     5281 agtcaatgtt ttaaatttat atgaagctta caataaatat gattataagg cattttttgc
     5341 taaagttgat tttttaaaag aatatttaca atttggaagt gctaaaaatt tagcaaaaat
     5401 cctaaacgaa atataaaagg ataaatcatg caaaaagaac caatgagtca atttggctat
     5461 gataagttag ccgcagaatt aaaagattta aaagacaatc aacgccctgc cgttgtaata
     5521 gaaatcgata cagcaagaag tcatggggat ttgaaagaaa atgctgaata ccatgctgca
     5581 agagaaaagc aagctttgat agaaagtcgt attgcagagc ttagtgactt gctagcaaga
     5641 gctcaagtga tcgatccttc aagctatgag cacgatagtg tgaaatttgg ttcaagtgtt
     5701 gtgatcatgg atttggatac agaaaaagaa agcaaatata ctctagtagg aatttgcgaa
     5761 ggaaatttag ataagggtta tatttccatc gcatctccaa tagcaaaagc tatgcttgga
     5821 aaaaaagaag gagatgattt taaagtgcgt ttgccaaaag gtgaaagtga atttgaaatc
     5881 ctttctataa attatgagcc tttgaaattt taaggataaa aaattttact acaaaatgga
     5941 gcgattttaa tcgcagatgc tcatgaaaat gaacaaagaa agggattttg ggaattttta
     6001 caagccttaa aaaaaggtaa aatttccacc cctcaactca tacttatagg tgatattttc
     6061 gatttgctta taggcgaaat ctctgctaca catgaatttg ctaaacctta catagaactt
     6121 ttagaagaat tggccttaaa aattgaaatt atctacttag aaggcaatca tgattttaat
     6181 ctttcttgtt tttttaaaag ggtaaaaatt tttaacttac aagagcagcc cataaagctt
     6241 aatttgcata caagtaaagg taataatctt gttttaaata gtgcttttat aaaattagct
     6301 cacggagata tttttttacc acctctttta caatttactc tgaaaacatt aagaaatcat
     6361 tatttgcttg tatttttgaa ttttttaaat attattactc gtaattttat ttcaaataaa
     6421 attcttcaaa atcaaaacaa aaaaaacctt ttttatcaaa taaaagattt tgaaaattta
     6481 gcgaaaaaaa gatatgaaaa atatgaaaat ttaggatttt gggtatgtga aggacactat
     6541 catcaaaatc atcaaatcaa caaagaaaac attaaatatc ttaacttagc tagttttgca
     6601 tatgagagaa gtttttttgt agtagaatat cagcaagaaa tcaaatttcg agaacagaaa
     6661 ttgaggggtc aaaatgtttg atgaaaatat cgtgaaaacg ggttcaaatg aaatggagct
     6721 tgtcgatttc cgtatcttta agcaagggca cgataaagtc tatgaaggaa tttatggtgt
     6781 aaatgtttct aaggtaaggg agattataaa aatcccaagc cttacagaac ttccaggtgt
     6841 acctgattac atcgaaggaa tctttgatct tcgtggagtg gttatacctg tagtcaatct
     6901 tgccaaatgg atgcaaatca ctgagccaga aagcactatg ctaaaaccta gagttattat
     6961 tactgaattt agcaatattc ttattggttt tatagttcac gaagcaaaaa gaattcgtag
     7021 aataaactgg aaagatatag aaccagcaac tttttctaca ggatcaggtg ctttagataa
     7081 aggtaaaatt acaggtgtaa cacgcattga aaatgatgaa gtgttgctaa ttttagatct
     7141 tgaaagtgtt gttgaagatt taggaattta cgctccaaaa acagatatag attttggaaa
     7201 aatagaaaaa tttactggaa cagcacttat acttgatgac agcatgactg ctagaaaacg
     7261 cgtcaaagaa atgatgcaac agatgggctt tcaagttgtt gaagctaagg acggcgtaga
     7321 gggcataaac aaattagaag aattaagcca aatttatggt gaaagtttaa acgatacttt
     7381 aaaaattata gtaagcgatg tcgaaatgcc acaaatggat ggtttccact ttgctgcacg
     7441 cattaaagaa gatccaagat ttaaagatat tcctatagtc tttaactcat ctttatcaaa
     7501 tgaatttatg aatgagaaag gtgttcaaga agctggtgga gaaggctatc ttgtcaaatt
     7561 taacgctagc gatttcttca atgaaattgc aaaggttatt aaaaaacatc aatctcaaga
     7621 acaggggtaa aatatggaag atatgcaaga aatacttgaa gactttttgg ttgaagcttt
     7681 tgagcttgtt gagcaaatcg accatgattt agtagagctt gaatcaaatc cagaagattt
     7741 agaattatta aatagaattt tccgtgttgc acatacggtt aaaggatcat caagcttctt
     7801 aaattttgat gttttaacaa agttaactca ccacatggag gatgttttaa acaaagcaag
     7861 acatggcgag ttaaaaataa ctccagatat catggatgtg gttttagagt ctattgatag
     7921 aatgaaaact ttacttaatt ccattcgtga taatggcaac gatactgcta ttggtatgga
     7981 tatagaacca atttgcgcaa gattaacagc tatttcagag ggagagtctc ctgttgtggc
     8041 aacagattca aatgaaaaat ctattccaca agcagaacta gaagcaccaa aacaagaaat
     8101 agctactcca gaacctgaag tagatgttaa tcaattaagt gattctgaag ttgaagctga
     8161 aatagaaaga cttttaaaag ttagaaaagc tgaagatcaa gctcgtcgcg cacaaaagaa
     8221 acaaacaaca aatgcggcac ctaaaccgac taacaataca gcaaataaac ctacggaaag
     8281 tggagagaaa aaagttcctg cttcaggtag taatgctagc agtatggatc aaaccatacg
     8341 cgtggaggta aaaagattag atcacttaat gaatctaatt ggagagcttg ttttaggcaa
     8401 aaaccgtttg cttaaaattt acgatgatgt tgaagagcgt tatgaaggag aaaaattcct
     8461 tgaagaactt aatcaggttg taagtcaatt aagtattatt acaactgatg ttcagcttgc
     8521 tgtgatgaaa acaagaatgc aacctatagc aaaagttttc aataaattcc caagagttgt
     8581 tcgtgattta agtcgtgaat taggaaagca aatagaactt gaaattacag gtgaagaaac
     8641 tgaacttgat aaatctatcg tagaggaaat tggcgatcct atcatgcata tgattagaaa
     8701 ttcatgtgat catggtgttg aggatccagc aactcgtgca gcaaatggaa aacctgaaaa
     8761 aggtatagta caacttaaag cttataatga aggcaatcac atcgttgtag aaattacaga
     8821 tgacggtaaa ggacttgatc caaatggctt aaaagcaaaa gctatagaga aaaatttgat
     8881 taccgaaaga gaagcagatc aaatgacaga caaagaagct tttgctttga ttttcaagcc
     8941 tggtttttca actgcagcta aagtaacaaa tgtttcaggt cgtggtgtag gaatggatgt
     9001 tgttaaaacc aacatcgaaa aacttaatgg ggtaattgaa attgatagtg agttaggcaa
     9061 aggaagttca tttaaactta aaattcctct taccttggca atcattcaat ctttacttgt
     9121 aggaactcaa gaggaattct atgcaattcc acttgcaagc gttcttgaaa cagttagagt
     9181 gccaattgat gatatctata ctatcgaagg taaaaatgta ttacgcttaa gagatgaagt
     9241 gctttctctt gtgagacttt cagatgtatt tggagttaaa caagtccttg aaagcggtga
     9301 tcaaacttat gtcgttgtta taggggtagc agaaagcaag cttggtatta tagtagatac
     9361 tcttgtagga caagaagaaa tagttattaa atctatgggt gattatttac aaaatatcca
     9421 aggtatagca ggagctacaa tccgtggtga tggtagagtg acattaatca ttgatgtagg
     9481 tgctatgatg gatatggcca aagaaattaa agttgatatt aaagcgcaat tagaatcaag
     9541 tgccaaaaaa cctaaagaac aaccaagtga ctataaagtc ttaattgtag atgattctaa
     9601 aatggataga actttaatgc aaaaagcttt agaaccgcta ggagttagtt taatcgaagc
     9661 aacaaatggt gttgaagcat tgaatattat aaaatctggc gaacatgata ttgatgcaat
     9721 gcttatagat atcgaaatgc caagaatgga tggatacacc ttagctggtg aaattagaaa
     9781 gtattctaaa tatcgcaact taccattgat agcagttact tcaagaacaa gtaaaactga
     9841 ccgtttaaga ggtgttgaag tgggtatgac tgaatatatc actaaacctt attctccaga
     9901 atacttggaa aatgtggtta gaaaaaattt gaaactagga taagaatatg agtaatgaaa
     9961 aattagagca aattttgcaa aaacagcaaa ctcagatggc tggtcctgat gtcgatcaaa
    10021 gagaagatga tatcatccaa cttgttggct ttgtagttgg agatgaggaa tatgcgattc
    10081 caattcttaa tatacaagaa atcatcaaac ctatagaata tactagagtt cctagtgtac
    10141 ctgattatgt tctaggggtt tttaatatgc gtggtaatgt tatgccgctc attgatctag
    10201 ctcaacgctt tcatttagga agttctaaaa tgacacctca aacaagatat attgttttaa
    10261 gaggtgagac aaatggaact ggagttggag gaaatgctgg ttttgttata gatagattaa
    10321 ctgaagcaat taaaattcac agaaacagaa tcgatccacc acctgaaact ttagttaaag
    10381 acaaaggtat gatttatggt ataggaaaaa gagatgaaaa tatcttaact atactcaaag
    10441 tagaagcttt gcttaagcgc gaattttaat gattaaactt tgtgtttttg actttgatgc
    10501 tactttaatg gatggtgaaa ccatcgatat tttagctaca gcgcatggca agggtaatca
    10561 aacaagcgaa attacccgcc atgctatgac tggagaactt gattttttcg aaagtcttca
    10621 aaaacgagta agctttttaa aaggtatgtc ttataaaaaa gttttagaat taagtagcac
    10681 acttccacta atgcgtggag cacatgaact tatccaatat ttaaaatcta aaaatataca
    10741 aattgttatt tttagcggtg gttttcatga aggcataaat cctgctatgc aaaaacttgg
    10801 aattaacctc ggttttgcaa attatctgca tcataaaaat gacattttaa cagggctagt
    10861 tggtggggaa atgatgtttt caaattcaaa aggcttaatg ctacaacgat taaaaagctt
    10921 tttaaatttg aaaacagatg aagtgatgtg tgttggcgat ggggcaaatg atttggcaat
    10981 gtttaacgaa agtggattaa agattgcatt ttgtgctaaa gaaattttac gttctcaagc
    11041 tgatatttgc atagatataa aagacttaaa agaaataata aaggtaatat aatgaaaaat
    11101 ttttctcttt ggtgtgattt tatagaaaat agttttttag ataatgaatt tttaaattta
    11161 ttatcacatg gaattaatgg cgctacttca aatcctgcta tttttaaaaa tgctatttta
    11221 aattctccaa tttataaaga taaaattctt aaattaaaag gaaaaaaaac aaaagatatt
    11281 tatgaagaat tagcaatttc tgatattcaa aaagcagctg ataaattagc tcctcttttt
    11341 tatcaaaaaa acgatggatt tataagtatt gaaatagatc caagacttca tgataacacg
    11401 actcttagtt taggcgaagc taaaagactt tatagtgcta ttagcaaaga aaatgtaatg
    11461 attaaaattc cagctacaaa agcttcttat gaagtaatgt atgaacttat gaaaaatggt
    11521 attagcgtca atgctacctt aattttttct cttgaacaaa gtcaaaaatg ttttgaagct
    11581 ttaaatgcag gtttagtcga atttagaaaa aacaatatag ccttaaaaga acaaaatact
    11641 agaacaccac aagctgttgt aagtattttt gtaagtcgtt ttgatagact tttaaatcct
    11701 aaagccaaag agcaaaatcg tattggaatt ttaaatgcaa atttagctta taacaatatc
    11761 tactcaaaaa atgaacctaa tattcgcgcc ttgtttgcaa gtactggagt taaaggagat
    11821 gatctgccaa aagactatta tatcaaagaa cttctttttg agaattctgt taatactgct
    11881 cctcttgatg caatagaggc atttaaagga aaaatggatt ttaaaaaacc tttaatgaat
    11941 tttgaaattt atacagaact taatcaaatc atttctcaaa gcgaacgaga aaaagcttgc
    12001 aatgatttat taagcgatgg catagagcaa ttttgtattg cttttgaaga tattttaaaa
    12061 gctctttaat taacgtattt ttatcatttt attctttgaa agttttaata tttttgatgg
    12121 gatattttcg aaaaatttct catcaagtat tatatcagca acacttctag cccatttttc
    12181 atcaaattct tttccatgct tgtttgccga agatgaataa aaatagccat ttttacttaa
    12241 aaaattcgca tgtttacact ctttcacaat acgaatagcc tgattatttg gataaataaa
    12301 agttgttttt ttagaacgac gtactaaatt tttaaaagat tttggaattc ttgctaaact
    12361 ttttaactcg caaaatttcg cagaagtgat taagcaaggc tgatttttat ctctaccttt
    12421 taaagcatta atctcttcta aatttttact taaaaatcct accgtagtat ctgtttgagc
    12481 taaataaatc aagatttaag ccactcttgc aaactcttta catctaggca agatttactc
    12541 tgtatagctt taatcgattt tgcacctgct aaagctgatc gtaaatttgt aaaataaggt
    12601 attttaaaac gaataatatt ttcacgaatt tttttcgtat cgcctttaaa actgtgacta
    12661 tcgcttgtat tgataactaa gtgaatttct ccatttttca atttatcttc aacattgggg
    12721 cgtccttctg aaattttatg tacaagttcg cactcaaaac cactttctaa aatttccttg
    12781 caagttcccc ctgttgccat aagcttaaag ccaagcttta catattctgc agcgattttt
    12841 ttggtatatt ttttatcctt atcttttaag gagataaata ccacgccttg ctctggaaga
    12901 tgattaaacg atgcaatttg acttttcgca taagaatttg caaaatcctt gcttataccc
    12961 ataacttcac ccgttgaacg catttcagga cctaattcta aatcacttcc actaagtttt
    13021 gcaaatggaa atactgcttc tttcacgctc atatattttg gagttttagg gcgtaaaatt
    13081 ttagtatcaa aattaaccac tttaaaagta tcataaaatt ttaaagcttc ttttaaattt
    13141 ccttgccaca tcacacgcgt tgccactttt gctaaaggaa tacccgtagc tttactaaca
    13201 aaaggtatgg tacgactagc tctaggattt acctctatca tataaagctc attattatgt
    13261 aaagcaaatt gtatatttaa aagtcctaca actcccaaat ttaaagcaat atctgcggtt
    13321 ttttgtgcaa taaattcttg cattttttca tcgatattgc aaggcggcaa agaacaagca
    13381 ctgtcacccg aatgaattcc tgcttcttct atgtgctcca taattcctgc aacataaaca
    13441 tctttgccat cacaaatcgc atcaacatca atttctgtag cattgtctaa aaactgatcg
    13501 atcaaaacag ggcttttatc gcttacatcc acagcttctt gcatatagag tctaagttca
    13561 gcctcatcat ttaccacgcg catcgcacgc ccacctaaaa cataacttgg tcttacaagc
    13621 acaggatacc ctatatcact agccttaaga accgcttctt ctacgcttgt tgcagtagaa
    13681 ttttttggct gattgatacc tagctttgta ataaattcgg caaatttctt tctatcttct
    13741 gccatatcaa ttactcttgc gctagtacct ataatcttag ctccaaaagc acttaaacgc
    13801 ttagcaaatt tcaaaggagt ttgtccacca aaatgcacaa tcactccatc aggtttttca
    13861 cgctcaatca ccgctcttaa atgttcgaaa tcaataggct cgaaatacaa aatatcactt
    13921 gtatcatagt cagtcgaaac ggtttcagga ttacaattat acataatagt tttaataccc
    13981 atatctttaa gcgcaaaaga agcatgtacg caagcatagt caaattctat accttgtcct
    14041 atacggtttg gccccccacc tataatcatc actttttttt cttttttatc cttagcatcg
    14101 tttttacttt gagtgagttc gcttacattg atacttgaat aaagataagg agttaaggct
    14161 tcaaattcac ccgcacaagt atccacttca ctaaattctg cgatgatttt ttgcttcatt
    14221 cttacataat aaatatcatt ttggcttaat tctaaattat ctttcaaatt tacaagcaag
    14281 gctatcattt tatctgaaaa gcccatagtt tttgcttttc tcaaaagagc cttattgttt
    14341 aaaatatcca tatcaatttg ttcttcaaaa tctacaattt ctttaatctg tgttaaaaac
    14401 caaggatcta ttttacaaag ctcataaagt tcttctacgc taaaaccttc cctaaaagct
    14461 tgagcaacat aaagtaaacg cttttcattg gcattgcgaa ttttaaaaac aagatcattt
    14521 ctatcttcaa attttaccct atcaaaacca cttaaagaac gctcaagcga acaaagtgct
    14581 ttttgtatac tttctttaaa agtgcgtcct atagccatta cctcacccac acttttcata
    14641 gctgtaccta aagttgtatt tgctcctgga aatttttcaa aggtaaagcg aggaattttt
    14701 gttacaatat aatcaatcac aggctcgaaa gatgcaggag ttcctgtaat atcattttta
    14761 atctcatcta agctaaaacc tactgccaaa agtgtcgcaa cctttgctat aggataaccc
    14821 gttgccttag aagctaaagc acttgatctt gaaactcttg gattcatttc tataactatc
    14881 attcttccat tttttgggtt gatagcaaat tgcacattac ttccgcctgt atctacacca
    14941 atttcacgca aaatagcaaa agaagcatta cgcataactt gatattcttt atctgtcaaa
    15001 gttaatgctg gagctattgt aatactatct cctgtatgaa ctcccatagg atcgatattt
    15061 tctatgctac aaactatgat acaattatcc gctctatcgc gtataacttc catttcatat
    15121 tctttccaac ctaacaaact ttcttcaatc aaaatttcat gaataggtga taaagctaaa
    15181 gcagtattgg taagttcttt aaattcgtcc atattgtaaa ccacaccact tccagcaccc
    15241 cctaaagtat aagaagcacg gatcatcaaa ggaaagccga tttcatctac ggcttttaaa
    15301 gcttcgtcat aattatacgc atacatcgat tttggcaaat ccatgccaat ttttttcata
    15361 cattctttaa aaacctgacg atcttcgcct tttttaatcg cctcaggatt tgcgcctaaa
    15421 aatttcacat ctcctaaaag tccgctttca taaacttcca tagcaacatt taacgctact
    15481 tgtccaccca tagttggcaa aattgcatca attttttctt ttttaataat acttaaaata
    15541 ctttcttttg ttatgggttc tatataagtc gcatctgcaa attcgggatc tgtcatgatg
    15601 gttgcaggat ttgagttgat taatactaca cgatatccta attcttttaa agtctttgcg
    15661 gcttgagttc cagaataatc aaattcacaa gcttgtccta tcacaatagg accacttcct
    15721 ataagtaaaa tgcttttaat atctgttcgt tttggcataa attttcctaa gagcataaat
    15781 ttgggctgat tataacaaaa attagtttta taaactttga aattatcgat ataattttaa
    15841 aaaataaaca ctctgctttt aatctaggaa ataatacata aagaaattta agatttttta
    15901 taaaattctc attcaattat aaacatttat ttgataattt aacaaaattt ttagcattaa
    15961 acaaagttat aataattagc aaaaatatag aaaattttta aaaagtctaa tccttgactt
    16021 ataaattatc aactacatat aaataagcag gaatactaat cttaacataa ggctttactt
    16081 ctacactttg atacatatct tcatcattaa ctctattcac aataccgaca ggtatatctg
    16141 aaaagaaaat attatcaagt ccacttgtta aaatttcatc tccggtatta atttttgccc
    16201 attttggaat aaatttaacc acaatcctgc catcttcacc ctggattaaa cctggagctt
    16261 tggattttcc tatataaaca gaaaaaacac actgatcatc accttgtaaa agagccattg
    16321 ctctaccatt tttattaata gctatacctg cagtatatcc ttgatatatc aaaccacggt
    16381 ttttaccaac gggaattttg ctccaatcta accataattt tttataatca ttcaattgaa
    16441 cataagaaat aactctagtt aaagaaactt gaggtaaata ttttgtagaa ttttgatcct
    16501 ctaaaatacg atttaattga tttgcaaaac tagttacctt tacagcaata tcttctaatt
    16561 ctttatttct agcttttagt tgctgaattt gatttgcttg attaaagtgt tctgaaattt
    16621 tttctcccaa ataatcttta atattataaa aattacctat aacaaaatca ttaacacgga
    16681 gaacattttg cttaataagt cctccataat aaaaagatat aaaaaccaaa aaggctaaga
    16741 caagaacata aaaaatctta ttcttcattg gttaattgtt gcaataatga aatttcctct
    16801 aaagctttac ctgttccttt tgctacagct aaaagcggtt catctgcgat ataaactggc
    16861 aaacgtacaa tttcacttaa gtatttatca agaccacgaa tcaatgctcc gccacctgtt
    16921 aaaactacac cattttctac tatatcactt gctaaatcag gcggcatcat ttcaagaacc
    16981 atttttaaag catcagcaat ttcttttaaa tactcacgca tcgcttctct tacatcttcg
    17041 cttgtaagtt caatacgact taaaagtcca cttacttgat cgcgtccttt taccaccata
    17101 gaaagctctt ttggaagttg tattgctgaa cctatagtga ttttgatctc ttcgcctgtt
    17161 ctttcaccta tgataagatt gtatttttct tttacataat taactatact catatcaagc
    17221 ttatctccag ccgtacgaat agactttgaa atcacaagtc cacccaaaga aatcactcca
    17281 atctcagtag ttccaccccc tatatctact accaaatttc ctttaggctc ttgtataggt
    17341 aaacttgcac caatagctgc tgccataggc tcttcaatca aaaatacctc tcttgcacct
    17401 gcgcttaaag cactttctct taccgctttt ctttctactt gagttaaacc ataaggaaca
    17461 gaaatgataa ttctagggcg taaaaaactt tttctacggt gtgttttttc tataaaatag
    17521 cggatcattt tttcagtcat atcaaaatct gcaatcacgc catctttcat aggacgaata
    17581 gcttcgatat tgcctggagt ttttcccacc atatctttag cttctttacc tacggctaaa
    17641 atttttgctt tggaaccata cctttctctt tcaactgcca caacagaagg ctcatttatc
    17701 actataccct tatcttttac caaaactagc gtattagctg ttcctaaatc aatccccata
    17761 tcactagaaa aaaatcctat aagttgatct aatatcattt ctatcctttt taacttattt
    17821 ttctttttat taataatgcc tttgcattgt ctttaacaac ttctttggtt attacaatat
    17881 catagtcttt atactctggt aactcaaaca ttaaatctac catcatttct tctataatac
    17941 ttctaagccc cctagcccct gtttttctct ccaatgcaag ttgtgcgata gctcttagag
    18001 catcttcttc aaattttaaa tttaccccat caatagcaaa aagcttttga tattgcttaa
    18061 taatggcatt tttaggttca gttaaaattc ttaccatatc ttcttcatta agctcattta
    18121 aagatgcaat cacatgcaaa cgacctataa gctcaggaat caaaccaaaa tgaaccaaat
    18181 catcaggttc aattttctca agtaaagctt tattttcttc ttttgcatca tcaaaaaaac
    18241 ctacaacttt atctccaagt tttcttttta agatagtttc caaaccatca aaagctccac
    18301 cacaaacaaa taaaatattt gaagtgtcaa tttgtataaa ctcttgattt ggatgttttc
    18361 tccccccttt tggtggaata tttaccaaac ttccttcgat aatcttaagt aaagcttgtt
    18421 gcacaccctc tccacttaca tcacgagtaa tagaacgatt ttcactcatt ctggcaattt
    18481 tatcaatctc atcaataaaa actatacctt tttgagctct ttgcacatct ccatctgcag
    18541 cttgtaaaag acgtgttaaa atattttcta catcctcacc tacatatcct gcttcagtta
    18601 aagaagttgc atcacaaatt gctataggta catctaaaaa tttagctaaa gtttgcgcca
    18661 ataaagtttt tccacttcct gttggcccaa caagtaaaat atttgactta aaaagctctg
    18721 tatcatcatc ttgaagttca gctttaaaaa gtcttttata atgattgtat actccaacac
    18781 taaaaacttt tttagctcta tcttgtccta tgacataacg atctaaataa gcttttaatt
    18841 cttttggagt gatatcttta aattctgtat tatgactttg tttaggttct ttaaattctt
    18901 tttcttctcc ataaataata ctataagcac cttcaacgca atattcacaa ataaaagcat
    18961 catcattttc atttgctaaa attcttcttt gtggattctc cacttcattg caaaaactac
    19021 attttctagg cattattttt acccctatag acaggaattc cacgctttgt ttctaatata
    19081 aaatgacaca tttttttaac attttcactt tcttgatttt caagcaaatt tttagcattt
    19141 tcttttaagt ctccttgtct aaataaagtt ttaaaagctc tgctaagtct atctacttca
    19201 tctttatcaa aacgacgacg aatacctact aaatttaaac ttctaatact tgcacgattt
    19261 ccttctgcta aacaaaacgg tactatatcc tgagaaagtg cacttgctcc tgctatcata
    19321 caaccctcac ctactttgac aaattgatga ataggtgtaa gcccgcctac aactgtaaaa
    19381 tctccaagct ctacatgtcc tgctaaagtt gcattattag ctaaaataat attattacct
    19441 aaaagacaat catgagcaat atgacaataa gccataataa aagcattatc gcctatacga
    19501 gtaaaaccat ctcctttagc tgtacctgaa tttatcgttg caaattctct aatagttgca
    19561 ttttttccta taacaacacc gcttttttgc tcttctttat aagatatgtc ctgaggaata
    19621 tcgcctacta tagcataaga aaatacacga gaatgatcac ctatagttgt atctgaaaga
    19681 attcgagcac cttgtttgat gacaacatta ttacctattt tagcatcttt gcttacatag
    19741 gcataagctt ctattacaac atcgtcacca agttgtgcac cctcttcaat caccgcactt
    19801 ggatgaattt ttttcattat ttatccacta tcatagcttt aagctcggcc tctgcaacta
    19861 aatttccatc tacaaaagct tgccctttaa aaatccacat attaccacga tttttaacca
    19921 cgctcatttc ataatcaagc ctatctccag gacgcacagg atttctaaat tttgctccat
    19981 ctatgcctgt gaaataaact actttacttt ttggatccac tttatcttcc atactttcaa
    20041 aagctaaaac tccacctgtt tgagccatac cttctaaaat caaaactcca ggataaatag
    20101 gatgccctgg aaaatgtccc ataaaaacat ggtcacttat actgatgttt ttatatccta
    20161 gcaccacttc tttaactttt aattctgtaa ttttatctac tagtaaaaaa ggataacggt
    20221 gtggtaagat ttcttgaatt tgcattacat ctatcattat taaattaacc ttgaaaacaa
    20281 ttaaaaattt tattatataa aaaaatcatt aaaaattata ttaacaaaaa agtttttctt
    20341 aataaatttc ttaaattttt acaagcacct cttgattatc atgataaatt tcactttttg
    20401 ctatcacttc atatcttgaa ggtaaaatat tttcaaggat gataatagga ctaagattat
    20461 aagttccaaa caatttatta cgccatttaa tttctgcttg aacacttaaa ggttttttta
    20521 aaaaatcttc aaaatttttc catttgtttt taaaaaatg
//
LOCUS       DAPOLW010000013        20367 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.013, whole genome shotgun sequence.
ACCESSION   DAPOLW010000013 DAPOLW010000000
VERSION     DAPOLW010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20367
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.013"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(114..998)
                     /locus_tag="ROE18_000347"
     CDS             complement(114..998)
                     /locus_tag="ROE18_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HDX3650568.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(995..1669)
                     /gene="modB"
                     /locus_tag="ROE18_000348"
     CDS             complement(995..1669)
                     /gene="modB"
                     /locus_tag="ROE18_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDX3650569.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKSKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYSLAHQYAFILFIFSFLVLFSLYFIN
                     KKMSFQ"
     gene            complement(1662..2063)
                     /locus_tag="ROE18_000349"
     CDS             complement(1662..2063)
                     /locus_tag="ROE18_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HDX3650570.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSVLMLELKSLENLKI
                     GVSVELLFKEHELCFSASKTLLSVENSFLAKITKIKKGKLLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(2060..2809)
                     /gene="modA"
                     /locus_tag="ROE18_000350"
     CDS             complement(2060..2809)
                     /gene="modA"
                     /locus_tag="ROE18_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDX3650571.1"
                     /translation="MKKFVVFFGILLFVSCLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGVENLKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKY
                     AKDKKLAFEFNEFIGSSKAKEIFKKYGFSTP"
     gene            complement(2860..3546)
                     /gene="bioC"
                     /locus_tag="ROE18_000351"
     CDS             complement(2860..3546)
                     /gene="bioC"
                     /locus_tag="ROE18_000351"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HDX3650572.1"
                     /translation="MNFLKAKDYEKHAKVQDFMGLKLCEILKNLRISHFEKVFEFGCG
                     RGELSKKLQNFITFDEYLKNDILDFKENSSILIFDMNEIAKQDLSKEKFDLIVSNATL
                     QWLDLKRIIPSLRDMLNQNGILLLSTFAEQNLKEIKQSTGFGLNYFSLNELEQIFKVY
                     FNEVKITQELIKLSFDNALDVFRHLKLSGVNSLGFYPLNKGFLKEFEEKFQNKLTYHP
                     VFILCKNDIK"
     gene            complement(3543..4154)
                     /locus_tag="ROE18_000352"
     CDS             complement(3543..4154)
                     /locus_tag="ROE18_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HDX3650573.1"
                     /translation="MKYEFLCKNPDSKKLIVVFGGFASHSSHFSHLKSDKNVILFYDY
                     ENFDLNFDFKAFDELFLIAFSMGVCVANRLLKELNFKQKIAINGTNLGIDKSKGIHPA
                     IFRKTLQNFKLENFKEALFKERKNLTKDFIFKDEKALKIELEKLFDFALVKQEENLLW
                     DKVYSSKKDEIFPPNALKNAFSKLIFLNEPHFAFFHFKTWDEL"
     gene            complement(4151..5293)
                     /locus_tag="ROE18_000353"
     CDS             complement(4151..5293)
                     /locus_tag="ROE18_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HDX3650574.1"
                     /translation="MKLEKILQDLEQNHNLRTLTPLKHENKFVYKQDHKLLNLVGNDY
                     LYLASSKELKAEFLNTLKEQDLFFSSSSSRSLSGNFEIYEKLESFLKTKFKDKEILHF
                     NSGYHLNISCIAALSSVSKTLFLTDKFIHASMIDGLRLGRADFFRFHHKDMNHLESLI
                     QKHYENYENIIVLSEALFSMDGDFSDFKTLCELKRRYDKIKLYIDEAHSVGCFDEEGL
                     GLVKKLALENEVDFLVFTFGKALASMGACIICDEKYKKFFINKARAFIYSTALPPINV
                     AWTQFIFKKMPYFKKEREKLELLSTFFKSKLQEKNHIVLGDAYIICLLLGENKKALEI
                     SQKLQKAGFFAPAIKEPTVPKNTARIRFSLHAGLNTEELERIIELL"
     gene            5361..6644
                     /locus_tag="ROE18_000354"
     CDS             5361..6644
                     /locus_tag="ROE18_000354"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HDX3650575.1"
                     /translation="MQNQILKNLDLKHIWHPCTQMKDHETLPLIPIKKAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKLSARLCEKV
                     GRNFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKALLLECLSTPVPQGKDYTKELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEARFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVLESLEQIFKEF"
     gene            complement(6631..7236)
                     /locus_tag="ROE18_000355"
     CDS             complement(6631..7236)
                     /locus_tag="ROE18_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HDX3650576.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(7246..7560)
                     /locus_tag="ROE18_000356"
     CDS             complement(7246..7560)
                     /locus_tag="ROE18_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDX3650577.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLIAVIITCTAGLKF
                     LS"
     gene            complement(7564..7902)
                     /locus_tag="ROE18_000357"
     CDS             complement(7564..7902)
                     /locus_tag="ROE18_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDX3650578.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWQYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIAILLLSI
                     IALKWVSKEA"
     gene            8036..8572
                     /locus_tag="ROE18_000358"
     CDS             8036..8572
                     /locus_tag="ROE18_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HDX3650579.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            8569..9114
                     /locus_tag="ROE18_000359"
     CDS             8569..9114
                     /locus_tag="ROE18_000359"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HDX3650580.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHAKKA
                     LLELIENDDLSAISSKYSLKA"
     gene            9116..10174
                     /locus_tag="ROE18_000360"
     CDS             9116..10174
                     /locus_tag="ROE18_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HDX3650581.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WALFFCCIYIGLNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQ
                     NSAQNIKIFNINDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDF
                     SELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFF
                     APFLMLIMYYFFPVIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIV
                     VPIIILGCLSAYMYYKHR"
     gene            10218..11426
                     /gene="lysA"
                     /locus_tag="ROE18_000361"
     CDS             10218..11426
                     /gene="lysA"
                     /locus_tag="ROE18_000361"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HDX3650582.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYAKNSSFLEPVGVHFHIGSQLLDISPIHEAAAIVAKLVRELKALQIDLKF
                     FDIGGGLGVAYEKNECEPDLYDYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYNQGEESLCDVVGGICESGDFFA
                     KARSLPSTQSDDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFEDQ
                     IALEEKFLKA"
     gene            11428..12195
                     /locus_tag="ROE18_000362"
     CDS             11428..12195
                     /locus_tag="ROE18_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HDX3650583.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYLIITNNTK
                     KLDFLEKLQQKGLVIKENAYIDPFSVLKHLLRPCKVAAFGADEFVKSLENLGFELDFV
                     NPSAVLVASYDDFKFKDFATMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRRQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKDLKCQI"
     gene            12183..13256
                     /gene="pheA"
                     /locus_tag="ROE18_000363"
     CDS             12183..13256
                     /gene="pheA"
                     /locus_tag="ROE18_000363"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HDX3650584.1"
                     /translation="MPNLEEFRNKIDAVDDKILDLLNERMTYVKSIGELKQSSGGSIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSRIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            13246..14340
                     /locus_tag="ROE18_000364"
     CDS             13246..14340
                     /locus_tag="ROE18_000364"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDX3650585.1"
                     /translation="MKFNEFLNNLSNYEPGKDIEVIAKEYGVKEVIKLASNENPFGTP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCL
                     PNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNLALKAAVAAMDDDEFTE
                     KTLENNFSQMELYKEFAKKHNIKIIDSYTNFITYFFDEKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            14392..16074
                     /gene="fliF"
                     /locus_tag="ROE18_000365"
     CDS             14392..16074
                     /gene="fliF"
                     /locus_tag="ROE18_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HDX3650586.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIIVVVGFLVFLALFRG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            16074..17102
                     /gene="fliG"
                     /locus_tag="ROE18_000366"
     CDS             16074..17102
                     /gene="fliG"
                     /locus_tag="ROE18_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HDX3650587.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            17110..17940
                     /gene="fliH"
                     /locus_tag="ROE18_000367"
     CDS             17110..17940
                     /gene="fliH"
                     /locus_tag="ROE18_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HDX3650588.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENTNISLNDEKPVEENQVIASTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFTKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            17933..19780
                     /locus_tag="ROE18_000368"
     CDS             17933..19780
                     /locus_tag="ROE18_000368"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HDX3650589.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFPCVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHAQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDTKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIALRYPRGSFILDKEFNPCEIKLGKAQWLVKNNSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEKNLEKDVNSLLTKVLKFYH"
     gene            19866..20276
                     /gene="perR"
                     /locus_tag="ROE18_000369"
     CDS             19866..20276
                     /gene="perR"
                     /locus_tag="ROE18_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HDX3650590.1"
                     /translation="MELLQMLKKHELKATPQRLCVLKILKRHEHLNIDELYTEIKKEY
                     PSISLATVYKNLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCTKCGGIEDLSFKD
                     AKLYEYQEHLEKKIGNLVNHLSVCAYVDNCKKCH"
BASE COUNT         7311 a         2791 c         3437 g         6828 t
ORIGIN      
        1 ttgtaaaaaa agttaaaaat gatggctagt gagtatttcg taaaatgcaa aaatacttaa
       61 ttgtatgatt tgcgtacact taaagtactc attaaaaaat taaatttttg ctcttattta
      121 tcaagttttc ctacgatgat agggttaaag gcttttatgg atagcaaaag cgtatcgccg
      181 atttttacat cttgataagc ttttagaaat tcctcttcac taagagtgat tttaataata
      241 tcttgattta aaagcaaggt taaaaccact aaaatatcac tttttttaat ttctagcaaa
      301 gttgcactta agcgtaattt tgcgctgata tttgaatgag taaaaaattc atttttagga
      361 aaatctttaa taatttttcc gtttttaagc tctaaaattc tatgacttaa cttataaatt
      421 tcagctagat catgacttac caataaagta cttattttaa aatactctaa aatcttggtt
      481 aattcatctt gtaaattggc acgcatttta aaatccaaag cactcaaagg ttcatctaaa
      541 agcaagattt ttggttctct tgctaaagct cttgctaaag ctactctttg tgcctgcccc
      601 ccacttaaat gtttaggata aattttagct aaattttcaa gcttcattaa ggctaaaagc
      661 tcgctaacct ttgctttaga actagcggca taggcgatgt tttcttttat attcatattt
      721 ggaaaaagcg cataatcttg aaaaacaaaa ccaatttttc ttttttgtaa agctaaacta
      781 aaattttttg aagaatcaaa ccaaagttca ttatctactt ctatacgccc caatttaggc
      841 tttataagtc ccgctatgat ttttaaaaga gtggtttttc ctgctccact ttcgccaaaa
      901 agtgcagtaa tttttcctga ttctatatct tttttaaaat ttaaatccag tcttccttta
      961 gcggtattca taggatgatt gatatcaatt cttatcattg aaaactcatt tttttattga
     1021 taaaataaag actaaaaagt actaaaaaag aaaaaataaa caatataaaa gcatattgat
     1081 gggctaagct atagtttaag atttcaagtt catcataaat agctatacta gccactaaag
     1141 tttcaccttg tttatgtcct cctatcatca tcacgactcc aaattcaccc acagtatggg
     1201 caaaactcat cgcacaagca ctaaaaattc ctgctttaga attaggtaaa atcactctaa
     1261 aaagagtata aattttactt ttacctaaac tataagaagc atcgagcaaa tttggattga
     1321 tcgatgaaaa ggcactttgc aaaggattta ccataaaagg caaagaaaaa atcaaagaag
     1381 caaaaacaag accttcaaaa ctaaaaacca aagaaagatt aaaatattct tttaaaactt
     1441 gccctaaaaa actattagcc gaaaaagtta caagcaaata aaatcccaaa acactaggag
     1501 gtaaaatcaa aggcaaggaa ataaagcttt gaaggattgt tttaaaagga aaacgcacaa
     1561 aacttaacaa ataagctaaa aaaacaccga taaaaaaaag gataaaagtc gtgataaaag
     1621 caagtttaaa agtaagataa agggtttgta aaaaagctgg atcaagcact atgactcctt
     1681 aatacaatat catttgcttt tacaaaacaa agccattctt gattttcaca aatttcaagt
     1741 tctaaagctt tttctttggt gataatacta gaaagttcat tacctttaaa atcaaaaaat
     1801 acctgatata aaagtttgcc ttttttaatt tttgtaattt tagctaaaaa agaattttca
     1861 acacttaaaa gagttttgct tgcgctaaaa caaagctcat gctctttaaa aagaagttct
     1921 acactcacac caatttttaa attttctaaa gattttaatt caagcattaa aacactaaaa
     1981 atcacttctt tagaaagtat tttaacaata actatatcct cttgatttaa aagctcacaa
     2041 atttgtcctt ttataaggtt catggtgtgc taaatccgta ttttttaaaa atttcttttg
     2101 cttttgaaga gccaataaat tcgttaaatt caaaggctaa ttttttatcc ttagcgtatt
     2161 ttgtgatgac ataactttgc tctaaagggc taaaatactt tgcatcaatt ataacagcct
     2221 tacccttagg atgattgata gaagaaacta aagaataagc cactatagct atatctgaat
     2281 ttttgctatc tacatgtaaa acaggcactg agatattttc gcctaaaacg attttatcct
     2341 taagaagctc atttaaaccc aaattttcaa gcacttcttt agctgctact ccataaggag
     2401 ctactttagg attggctatg cttagatgcg tgattttgtt tgccttttct tttaaatttt
     2461 caacgcctcc ttggagtaaa ttttcatcca agctatacaa agccaaaact cccaaaacat
     2521 aaacttttgg ttttattaaa gcatttttat catcataaat agccttagca tatttagtat
     2581 ccgctgaaaa aaagagatca aattctcttc cttgttttaa aagctcataa tattttccag
     2641 aagcaccaaa aaccaattct attttatctt ctggatgtgt tttcaaaaac tcatctttaa
     2701 cttcactcat cgcctttgaa gctgaagaag ctacaaaaat acttaaattt tgcgcattta
     2761 aacacgaaac aaaaagcaaa atcccaaaaa atactacaaa ctttttcatt tagttttcct
     2821 tgtgtaaaaa tttaattttt ggattataac acaaaaaatt cattttatat catttttgca
     2881 taaaataaat acaggatgat aagtgagttt gttttgaaat ttttcttcaa attcttttaa
     2941 aaaaccttta tttaaaggat aaaatcctaa agaatttact ccgcttaatt ttaaatgtct
     3001 aaaaacatct aaagcattat caaagcttaa ttttatgagt tcttgagtaa tttttacttc
     3061 attaaaatag actttaaaaa tttgctctaa ttcatttaag ctaaaataat ttaaaccaaa
     3121 acccgtgctt tgcttgattt cttttaaatt ttgctctgca aaagtagaaa gaagtaaaat
     3181 cccattttga tttagcatat ctctaagact tggtataatg cgttttaaat caagccattg
     3241 caaagttgca tttgaaacaa taagatcaaa tttctcttta cttaaatcct gttttgcaat
     3301 ttcgttcata tcaaaaatta aaatactaga attttcttta aaatctaaaa tatcgttttt
     3361 taaatactca tcaaaagtaa taaaattttg aagttttttg ctcaattcac ccctgccaca
     3421 accaaattca aatacttttt caaaatgtga aattcttaaa ttttttaaaa tttcacaaag
     3481 ttttaaaccc ataaaatctt gcacttttgc atgtttttca taatcttttg cttttaaaaa
     3541 attcaaagct catcccaagt tttaaaatga aaaaaagcaa aatgcggttc atttaaaaaa
     3601 ataagttttg aaaaagcatt ttttaaagca tttggtggaa aaatttcatc ttttttactt
     3661 gaataaacct tatcccaaag caaattttct tcttgtttta ctaaagcaaa gtcaaaaagt
     3721 ttttcaagct ctatttttaa agctttttca tctttaaaaa taaaatcttt agttaaattt
     3781 ttgcgttctt taaataaagc ttctttgaaa ttttctaatt tgaaattttg caaggttttt
     3841 ctaaaaattg caggatgaat tccttttgat ttatctatgc ctaaatttgt gccatttatg
     3901 gctatttttt gtttaaaatt aagctctttt aaaagtctat ttgccacaca aacccccata
     3961 gaaaaagcga ttaaaaaaag ttcatcaaaa gctttgaaat caaaatttaa atcaaaattt
     4021 tcataatcat aaaataaaat cacattttta tcgcttttta aatgcgaaaa atgactagaa
     4081 tgtgaagcaa atcccccaaa taccactata agtttttttg aatcaggatt tttacataaa
     4141 aattcatatt tcataaaagc tctattatcc tttcaagttc ttctgtgtta agtcctgcgt
     4201 gcaaagaaaa acgaattctg gctgtatttt ttggcacggt aggttctttg atcgcaggag
     4261 caaaaaaacc agctttttga agtttttgtg aaatttctaa ggctttttta ttttcaccta
     4321 aaagcaagca aataatataa gcatcgccta aaacgatgtg atttttttct tgcaatttac
     4381 ttttaaaaaa agtgcttaaa agctctaatt tttctctttc tttcttaaaa taaggcattt
     4441 ttttaaaaat aaattgcgtc caagctacat taataggtgg caaggctgta gaataaataa
     4501 aagctctagc cttgttgatg aaaaatttct tatatttttc atcacatatt atacaagcac
     4561 ccatggaagc aagggctttt ccaaaggtaa aaaccaaaaa atccacttca ttttctaagg
     4621 ctagtttttt aacaagcccc aaaccctctt catcaaaaca acccacgctg tgtgcttcat
     4681 ctatataaag cttaatttta tcataacgcc ttttaagctc acacagagtt ttaaaatcgc
     4741 taaaatctcc atccatacta aacaaagctt cgcttaaaac gatgatattt tcataatttt
     4801 cataatgttt ttggattaaa ctctctaaat gattcatatc tttatgatga aaacgaaaaa
     4861 aatcagccct gccaagtctt aagccatcaa tcatacttgc atgaataaat ttatcggtta
     4921 gaaaaagcgt cttagaaacg ctagaaagtg ctgctataca agagatattt agatgatagc
     4981 cactattaaa atgtaaaatt tccttatctt taaatttagt ctttaaaaaa ctttctaatt
     5041 tttcataaat ttcaaaattt ccactcaaac ttcttgaact cgaacttgaa aaaaacaaat
     5101 cttgttcttt tagggtgttt aaaaactcag cttttaactc tttggaagac gccaaataaa
     5161 gataatcatt tcctactaaa tttaaaagtt tgtgatcttg cttataaaca aatttatttt
     5221 catgttttaa aggtgttaga gttcttagat tgtgattttg ctctagatct tgcaaaattt
     5281 tttcaagctt catttttttc ctgtaaattt aaaaatttaa agtattattt tgccaaaata
     5341 tttttaaaaa agaagttata atgcaaaatc aaatcttaaa aaatctcgat ttaaaacaca
     5401 tttggcaccc ttgcacacaa atgaaagatc acgaaaccct acctttaatt cctataaaaa
     5461 aagcaaaagg tgtatggctt tatgattttg atgataaagc ttatatggat tgtgtgagtt
     5521 cttggtgggt caatcttttt ggtcattgta atgaaaaaat cgcaaatgcc attaaaaaac
     5581 aagttgatga gctagagcat gtgatcttag caggctttac acatgagccc attatcaagc
     5641 tttctgcaag actttgcgaa aaagtaggca ggaattttaa caaatgtttt tatgcagata
     5701 atggatcaag tgctattgaa gtagcactta aaatgagttt tcattatcat ttaaataagg
     5761 gagtgaaaaa aagtaaattt ttatctttaa gcaattctta tcatggtgaa accttaggag
     5821 ccttaagtgt gggcgatgta gcgctttata aagatactta caaagccttg cttttagagt
     5881 gtttaagcac gcctgtgcca caaggcaaag actacactaa agagcttgaa attttaaaag
     5941 atattttaga aaaaaatgca agtgaaattt gtgcttttat acttgaaccc ttggtacaat
     6001 gtgcaggaaa tatgcatatg tatgaagcaa ggtttattga tgaggccata aagctttgcc
     6061 ataaatttgg agtgcaagtg atttttgatg aaattgcagt gggctttgga cgcacaggaa
     6121 ctttgtttgc cttacatcaa tgcaaacaaa gccccgattt tatctgcctt tcaaaaggga
     6181 taacgggtgg atttatgcca ctttctgtag tgcttacaag agatgaaatt tataatgctt
     6241 tttatgatac ttatgaaagc caaaaggctt ttttacattc tcatagctat acgggaaata
     6301 ccttagcttg cgcggcagca aatgcggttt tagatatctt tgaggatgaa aatattttag
     6361 taaaaaatca aattttaagc gagtttatca aaaaagaatt ttcaagactt gaaaaatttg
     6421 actttttggg taattttaga acttgcggga tgatcagtgc ttttgatatt ttaagcacca
     6481 agtataaacg cgtaggactt tttgtatttc aaaaagcctt agaaaaaggt ttgcttttaa
     6541 gacctttagc aaatacgatt tattttatgc ctccttacat catcacaaaa gaacaaatcg
     6601 tttatgtact agagagttta gagcagattt ttaaggaatt ttaagttgta aaatttcttg
     6661 catttgctct ttaaaatctt tatttaaaat gctattttca tcaaaaaaat caagattgat
     6721 tataggaatt tttgcataat tttttataaa atcatcttgt aagatatctt ttttacccat
     6781 cattacaagg gctaaaagat tgatatttct ttgctttaaa gcttcaatgc taagcaagat
     6841 atgattaatg cttccaagat agtattttgc taccaaaatc gtagggtgtt tgaaaatatt
     6901 cacaaaatca atcatagtgt aattttcatc cataggagaa aaaagcccac ccgcaagctc
     6961 aataagtagg tttttgcttt ttggtaaaat gatatctaag gctttataat caagcttttc
     7021 tttgattttt ccaagatgag gagaagctgg agtttgcaaa aaaatacctt ctttaaaaat
     7081 ctttgttttt gggctaaatt ttgcaataaa ctcactatct gttggagttc ctgcttgaat
     7141 gagtttaaaa taatcatagt taaaattcgc acaaaaagct gcactaaaat gtgtttttcc
     7201 tacatcagta tgtattccac ttacataaat ttgcacaaaa aatcctcaag aaagaaattt
     7261 taaacccgct gtacaagtaa taatcacagc gattaaaaaa agtttcaaaa aacttttact
     7321 ttctttataa aaaagcactc ctatcattac cccaccagcg gttccagctc ctgtccatat
     7381 agcataagca acgctcatag cgatattttg catacttaag cttaaaaaag taaaagaaaa
     7441 tccaaaacac actatcaaag ctaaaaggta aagcttgttt ttagtgctta caagttcttt
     7501 catgatcacc acgccaaaaa tttcacaggc agtagctaaa aacaaataaa accattccat
     7561 agtttaagct tccttgctta cccatttaag ggctataata cttaaaagta aaattgctat
     7621 aagcacaagt ttaattatag aaacagcttc gttaaaaata aacatttcat ttaaaaccac
     7681 cccaatagtg ccaatgccta caaaaacact ataagtaata cttacttcaa gtctttcgca
     7741 agcttttaaa aagcaagtaa aagaaataca aaccccaatg gctgttaaaa tatactgcca
     7801 aatttctgta gaatatttaa gtccacttac ccaaaagcac tctataattc cacctaagat
     7861 tattaaaaac caagctatat taatattgaa tttttcattc acatgaagcc ttaaattaac
     7921 ataatatttg taaaacaaat tatatcttaa agaaattaaa agaagctata aatttacttt
     7981 tccataagcc aaaattagat ataatcaaag ctcatttttt aagaaaggat aaaagatgtt
     8041 agaaggtatc gttagagaga gtatcggtag aaaagctgct aaagctttaa aaagagatgg
     8101 ttatctaatt gcaaacatct atggaaaagg attagaaaac atcaatgccg cttttaaagt
     8161 aaatgagttt attaaggaag ttcgtaaaaa aactacttta atttttgatg taaaagtagg
     8221 ttctcaaact ttaagcgttg tagttgtgga ttatcaaaaa gatcctgtaa ctgcagaact
     8281 taaacatgtg gatttaaaag ttgcgcaaaa aggtgtgatt tctaaataca tggttccagt
     8341 taaaatcaca ggaacagcta taggtcttaa aaataaaggt gttttaattc aatcaaaaag
     8401 aagattaaaa gtaaaatgtg cagctgaaaa tttaccaaat ttcttcgaac ttgatgtaag
     8461 taaacttgat gtgggtgatg ctttacttgt tcgtgatatt gtagttcctg cgggagtaac
     8521 tatgattgat gctgatagag tagcggttgt aggtgtagaa aaagctagat gattttagtc
     8581 gtagggcttg gcaatatagg cgtagagtat gaaaataccc gtcataatgt cggttttatg
     8641 ctaattgact tacttttaaa agaaagcaat tttacaaatc ttacaaactc taaatttaaa
     8701 ggagagcttt ttaaaatagg ttcttcttta cttcttctta aacctagtac ttatatgaat
     8761 aattcaggac ttagcgtaaa agcagtgaat gatttttata aatgcgaaag aatgatagtt
     8821 atccatgatg atatagatat aaatttagga gccttgcgct ttaaaaaagg cggttcaagt
     8881 ggtggacata atgggcttaa aagcatagat actttatgtg gaaatgacta tgaaagagtg
     8941 cgtataggag tgggaaaggg tgaaaatgtg atttcccatg ttttaggtaa atttaaatcc
     9001 gaagaagaaa taactttaag caaagtttta gagcatgcaa aaaaagcttt gcttgagctt
     9061 attgaaaatg atgatttgtc tgctatatca tccaaataca gcctaaaggc ttaagatgtg
     9121 gatatttttt cgttttattt cagggattta tttaaaaaat ttttttatta tatttttttc
     9181 tttacttggt ttttattgcg gtattgattt gctcttaaat tttaaagatc taccaaaagc
     9241 cgcaaatctt gatttgcttt atgttatgtt tttatctttt tcggcagtgc cttatgtatt
     9301 acccatttct ttgatttttg ctttggtagt ttctttgatt tctatgatca gagcaaatga
     9361 atttgtaagt ctttatgcgt taggactgag tagaaattat gttattttat ttcctttttt
     9421 atgggcttta tttttttgtt gtatttatat aggattgaat tttacttctt ttgcttatgc
     9481 aaatgattat aagagaaata ttttgaaaaa tggcactatt atgaatcaaa gtggagaagt
     9541 gtttttgaaa tttaacaata attttgttta tatttcaaag ataaacaatg gacaaaatag
     9601 tgctcaaaat ataaaaattt ttaatattaa tgatttaaat ttaagctctt ttgtaagtgc
     9661 taaaaatgcc cattttgaag gtgaaagctg gattttgcga gatggtaata ttacattatt
     9721 acctaaaaat tatgaacttg ctaatgatgg tttaaagata caagatttct ccgagcttaa
     9781 atcacttgag ggttttaaac caaagattat agaaggggtt gctagtaata gtgattattc
     9841 aatatctgac gcacttgaaa gttttgagct ttttaaggcg caaaatgtca atacagatac
     9901 tcttaaaatc aatctttata aatttgtttt tactcctttt tttgcaccat ttttaatgct
     9961 tattatgtat tatttttttc ctgtaatagc aagatttttt aatcttgctt ttgtaacttt
    10021 tatagctttt gtagtgactt tgatgatttg gggagtcttg tttttgctta ctagattaag
    10081 cgaaaatagt gtgattgcaa gtgaaattgg cattgtagtg cctattataa ttttgggttg
    10141 tttaagtgct tatatgtatt ataagcatcg ataaattaag ctttgtgtag taaaattata
    10201 aaaattaaag gttaaatatg gattataaac aattaaagca agaatttaat actccttttt
    10261 atatttacaa ttttgatttc ataaaagagc gttttttaaa tctcaaagag gcttttaagg
    10321 caagaaaatc tcaaattttt tacgctgtaa aagccaattc aaatttaagt ttgttgcaaa
    10381 tgcttgcaaa tttagatagt ggatttgatt gtgtaagtat aggcgaggta aagcgtgcct
    10441 taaaagcagg agcaaaagct tataagatta tttttagtgg agtaggaaaa accaaagaag
    10501 agttaagaca agctttagaa tatgatattt tatatattaa ccttgaaagc gaagctgaaa
    10561 tgatgctttt agaaagtgtg gctaaagaac ttaatctaaa ggcaagaatc agtattcgtg
    10621 ttaatccaaa tgttgatgca aaaactcatc cttatatttc tacaggatta aatgaaaata
    10681 aatttggtgt tgaaattgat atagcaagaa aaatgtatct ttatgcaaaa aattcatctt
    10741 ttttagagcc tgttggagtg cattttcata taggttcgca acttttagat atttctccca
    10801 ttcatgaagc agcagccatt gttgcaaaac ttgtaagaga gttaaaagcc ttgcaaatcg
    10861 atcttaaatt ttttgatata ggcggtggtt tgggtgtggc ttatgaaaaa aatgagtgcg
    10921 aacctgatct ttatgattat gcacaaggta tattagcaca acttcatggg cttgatttaa
    10981 ctataggaat ggagcctgga aggtatctag ttgctaaaag tggagaattt gtttgttcag
    11041 tgctttatga aaaacaaaat aaaaccaagc gttttgttgt agtagatgga gcgatgaatg
    11101 atcttatacg cccaagttta tacgaggctt atcatgaaat aatcttacct tataatcaag
    11161 gcgaagagag tttatgtgat gttgtaggtg gaatttgtga gagtggggac ttttttgcta
    11221 aagcaaggtc tttgcctagc actcaaagtg atgatataat ggttattaaa aatactggag
    11281 cttatggttt tagcatgagt agtaattaca atactcgtaa taaagtttgc gaattagccc
    11341 ttgaagaagg acaggtaaga ttgatccgtc aaagagaaaa ttttgaagat caaatcgctt
    11401 tagaagagaa atttttaaag gcttaaaatg ttttttttag atgttcaagg gactttaatt
    11461 tctgatcatg ataaatcttt aatccatggt gctaaagaac tgatcgattt tttaaatgca
    11521 aaaaatcttc cttatcttat catcactaac aatacaaaaa aacttgattt tttagaaaaa
    11581 ttacagcaaa aaggattggt tataaaagaa aatgcttata ttgatccttt cagcgtttta
    11641 aaacaccttt taagaccttg taaagttgcg gcttttggtg cagatgagtt tgtaaaaagt
    11701 cttgaaaatc ttggttttga gctcgatttt gtaaatccta gtgctgtgct tgtggctagt
    11761 tatgatgatt ttaaatttaa agattttgcc actatgatag aattggctag aagagaagtt
    11821 agatttatag ctatgcacga aactagtatt tataaaaaag atggtaggcc ttatcctggt
    11881 gtaggtagca ttatggctat gcttaaaaat gctattgatt ttgaatacga ggttgtgggt
    11941 aagcctagca ttgcttttta taaagaagct ttaaatttaa taagaagaca aaattcaaaa
    12001 attgattttg aagatattaa aatcattagt gatgatttta ggggtgactt gcttaaggca
    12061 aaagaacttg gcatgaaaac cttgctagtt ttaagcggca agataagcga cacaaaaggg
    12121 cttgatacgg atttgcttga tggagtttat cctagtgttt ttgagttttt aaaggatcta
    12181 aaatgccaaa tttagaagaa tttagaaata aaatcgatgc ggttgatgat aaaattttag
    12241 atcttttaaa tgaaagaatg acttatgtta aaagtatagg tgagcttaag caaagtagtg
    12301 ggggaagtat ttatcgtcct gagcgtgaaa gagccattat caatcgttta aaaaatgcaa
    12361 atttaggact tttagatcaa aatgccatag aggcaattta tcaagaaatt tttgcagttt
    12421 caagaaattt agaaatgcct caaactatag cttatttagg gcctgaagga acttatacac
    12481 atcaagcagc aagaagtcgt tttggtgcga tgagtcgtta tatagccttg gctaatatcg
    12541 aagatgtttt taaagagtta agcaacaaag aagcaaaata tggtgttgta cctatagaaa
    12601 ataataccga aggtgcagtg ggcattactt tagattgtct aggtaagtat aatgagctta
    12661 aaatttttgg cgaaatttat atggatattc atcattcttt tgtaggaatt aatgaaaatt
    12721 taaaagaaat caaacgcatt tattcgcatc cgcaaggtta taatcaatgt cgtaaatttt
    12781 tagaaagtca tgaacttagt gctatagaat ttgttccttc aaaatctaca gctaatgcag
    12841 cttacctagc ttcgcaagat aaatatgcgg cagcaatttg ttctagaata gcggctaagc
    12901 tttataatgt gcctgtactt tttgataaaa tagaagataa tgcagccaat aaaacaagat
    12961 ttttaatttt aagcgatatt aaaaatccta aaatgccaaa ttgtaaaact tctattttag
    13021 cacacacagc acataaacct gggggactta gctttttatt agagcagttt aaaaaagaaa
    13081 atatcaatct tactaagctt gaatctcgcc ctgtaaaatc aaaagaattt ttacacagtt
    13141 tttatataga ttttgaaggg catattgatg atgaaaatgt aaaaaaagcc ttaaaagata
    13201 tacaagagat tgtttggctt ggatcttatt tatcaggaga aaaagatgaa atttaatgaa
    13261 tttttaaata atttaagcaa ttatgaaccc ggcaaagata tagaagttat tgctaaagaa
    13321 tatggcgtta aagaagtgat aaaattagca agcaatgaaa atccttttgg cacgccacca
    13381 aaagctatag aatgtttaag acaaaatgca aacaaagccc atctttaccc tgatgatagt
    13441 atgatagaac ttaaaagcac attggctcaa aaatacaaag ttcaaaatga aaatatcatt
    13501 atcggtgcag gcagtgatca agtgattgaa tttgctatac attctaagtt aaattctaaa
    13561 aatgcttttt tgcaagctgg agttactttt gctatgtatg aaatttatgc caaacaatgt
    13621 ggtgcaaagt gttataaaac tcaaagtatt actcataatt tagatgagtt taaaaaactt
    13681 tatgaaacgc acaaagatga aattaaactt atttttttat gcttaccaaa caatccttta
    13741 ggcgagtgtt tggatgcaag tgaggcgacc gagtttatta aaggtgtaaa tgaggattgt
    13801 ttagttgtga ttgatgcagc ttataatgaa tttgcaagtt ttaaagatag caaaaaacat
    13861 ttagaacctt gtgaattgat taaagaattt gacaatgtgc tttatttggg aactttttct
    13921 aaactttatg gattaggagg cttacgcatt ggttatggca tagctaatgc taatattatt
    13981 agtgcatttt acaagcttcg tgctcctttt aatgtgagca atcttgcttt aaaagcagca
    14041 gttgcagcaa tggatgatga tgaatttact gaaaaaactt tagagaataa tttttctcaa
    14101 atggagcttt ataaagaatt tgctaaaaaa cataatatca aaattatcga tagttataca
    14161 aatttcatca cttatttttt tgatgaaaaa aatagtacag atttgtctga aaaattgctt
    14221 aaaaagggta taataataag aaatttaaaa agctatggtt taaatgctat acgcattact
    14281 ataggaacat cttatgaaaa tgaaaaattt tttacagaat ttgataagat tttaagatag
    14341 ataaatcaaa taaaaatatg taaaattcgc taaactaagg gatgagaatt aatggatttt
    14401 aaaaatatgc ttcatcaaat tgggcaactt tatcaaaatt taactcgcaa gcagcgtata
    14461 gtgattgctg catctattat agttgtggtt gggtttttgg tttttttagc tttatttcgt
    14521 ggaagtggta gtaatgcaaa taatggatat gcagttttag ttgaaaatgt aagcccaagt
    14581 tcttctgctg caattgtagc taaacttgaa caaaataata ttccctataa attagaaagt
    14641 gaaaataaaa ttttagttcc acaagatcag gtttatcgtc aaagaatgtt tattgcaagc
    14701 gaaggtctta taaaagatag tcgcgtgggt tttgaagctt ttgatactca agcttttgga
    14761 gctacaaatg aagagcaaaa ggtaaaatac caaagagcca tagaaggcga acttgcaaga
    14821 actattgaga ctttagaacc tattcgtagc gctgttgtac acatagcatt tcctaaagat
    14881 agtgttttta ctgaaaggca aattccgcct acagcttcag ttgttgttaa tgttcgcgaa
    14941 ggcttaaagc ttactagaaa acaaattgat ggtataaaaa atattgtttc agcggcagtt
    15001 ccaaaactta ctaaagaaaa tgttaagatt agtgatcaaa gtggtgtgcc tttagatgag
    15061 caagaagcat atgaagatga cttggttcgt gcgcaaatta aatttaaaag tgatcaagaa
    15121 aaagctttag aagataagat tatagaaaat ttagctcctt ttgcaggtgg catggataaa
    15181 gtaaaagtga gtgtaaatat agattttgat ttttccaagc aagaatctca aagtgaaatt
    15241 tatgatccaa atcctatagt acgtagtgag caaactttaa acgaggaaag aacaggtaga
    15301 aaagatccag aaattcaggg tgttccaggt gctgtttcta atataggtcc tgttgaagga
    15361 cttgacaata agggtcaaat tgacacttat aaaaaaaatc aagttactac aaataatgaa
    15421 ctttctaaaa ctatcacaaa taccaaaaaa caatttgcaa cagttttacg cacttcagca
    15481 gctgttacta tagatggaaa atatcaagat gtggttgatg aaaatgggga tgtgaaaagc
    15541 gaatatgtcc cattgactaa agaagagctt gcaagtgttg agagtatagt taaaaatact
    15601 attaatttta gcgctactag aggtgatagt gttgtggtgc aaaatttacc atttcatcgt
    15661 gagtcgatta gagttgagag taaagttaaa actttttaca atcgttttgt tgagccattt
    15721 attccgccgg ttaaatactt tattgcagcg attttacttt ttatttttta caaaaaagtt
    15781 attgctccat ttactcaaaa aatgcttgaa gatgtcgcag cacaagagga aatgcagcaa
    15841 ggtccaaatg ctgttttaga tgatgctgaa gatgctttag agaaatttaa tgcagcaagg
    15901 aaaaaagttg aagaacaact tggttttggg gataacttca atgaagattc tatccagtat
    15961 gaggttttgc ttgaaaaatt gcgtggtttg gtaagtgata aaggtgagga aattgcagca
    16021 cttttgcaaa acttaattca aaatgatagc gaatttggcg aaaaggatat gtgatgataa
    16081 agctaagcga agaacaaaaa atggtctatg atgatttatc gatgcctgag aaggtagcga
    16141 tatttcttat acaacttggc gaagatgcaa ccacttctgt gttttcacat atggaaattg
    16201 atgtaatcac agaaatttca cgttatattg ctatggctaa aaatgttgat agatctgtag
    16261 ctactgcagt tttagaagaa ttttacactc tgcttcaatc aaatcaatat attaaaagtg
    16321 gtggtttgga atatgctaaa gaaatacttt ttcgtacttt tggaccagag attgcaaata
    16381 aaattcttga aaaactcact aaaagtatgg agaataatca aaattttgct tatttggcgc
    16441 aaattaaacc acagcaactt gcagacttta ttaccaaaga gcacccacaa accatcgctc
    16501 ttattttggc acacatggat tctattcatg cggcagaaac tttagagtat tttagcgatg
    16561 aattaagggc tgaggtggtt ataagaatgg caaatcttgg tgatatttct ccaagtatta
    16621 ttaaaagagt ttctgcagtg ctagaaagca agcttgaaag tcttacctct tataaggttg
    16681 aagtgggcgg cccaagagca gtagcagaag tgcttaatcg tttgggtcaa aaagcaagca
    16741 aatcaaccat tacttatatt gaacaaagtg atgaacgctt agcagagact attaaagagc
    16801 ttatgtttac tttcgatgat atacaaaaac ttagcactca ggctataaga gaaattttaa
    16861 aagtagccga taagcgtgat ttaatgatag gtttaaaagg tgcaagtgaa gagttaaagc
    16921 aaaaattctt agccaatatg tctacgcgtg caagcgaagc ttttcttgaa gaaatgggtt
    16981 ttttgggtgc tgtgcgtgtt aaagatgttg aagatgcaca aagaaaggtt gttgaagtgg
    17041 tgcaaaaact tgcagaacaa ggtcttgttc aaacaggcga tgcggatgaa atgatagagt
    17101 aggtgagaga tggttaatcg tagcaatgta atttctggtg gggcttctga tcagcatgtt
    17161 gttgaaggat atcgttttaa agttatttca gaatttgata atcatacagg tgaaaaaaaa
    17221 catactcaaa ctccagatga agaaaatact aatatatctt taaatgacga aaaaccagtc
    17281 gaagaaaatc aagtcattgc ctctacacaa gctgttatgg aaactcaaat tccaacattt
    17341 caaccaagct ttgttgaaga tttacttaaa aaaacagatg aaatgtcaag caatattatt
    17401 aaacttcaaa tgcaaataga aagccaagag aatgaattta ataaccgctt aaattcagaa
    17461 cttgaaaatg ctaaagaaaa atttaccaaa gagggttatg agaaagcaaa agaagaattt
    17521 caaaaggaat tgagtgattt taaagataag tatttaaaaa gtatagccaa acttgataat
    17581 gcttgcgaaa atcttgaaaa tttcatagaa aaaaatgaga aagaattagc agatactgct
    17641 atagatatcg ctaaagaagt aatcttaaaa gaacttgaac taaattcaag taagatagct
    17701 tatgctttgg ctaaagattt aatcggtgag cttaagggtg ctagtgcaat tgagcttaag
    17761 gttaatgcag aggattatga gtatttaaaa gagcaatttg atcagaatgc tcatattaaa
    17821 ataagtcttg atgatgcaat tagcaaagga agtgttgtta ttataagtga cgcaggcaat
    17881 atagaatcca atcttaactc tcgtctaact aaaattaaaa aaatggtgaa taatgagtaa
    17941 aaaatttgcc catactcaag aagagttaga aaagctaagt ttaaaagaat tagaaaattt
    18001 agcagcatct atgcgtgaaa aaatcataca agttgtgagt aaaaatggtg ggcatttaag
    18061 ttcaaatttg ggtgctgtag aacttagtat agcaatgcat ttggtttttg atgcaaaaaa
    18121 agatcctttt atttttgatg tgtcgcatca gtcttataca cacaagcttt taagcggaaa
    18181 agaagaaata tttgatactt taagacaaat caatggttta agtggttata caaaacctag
    18241 cgagggagat tattttgtag cagggcattc tagtacctct atttctttgg cagtaggtgc
    18301 ttgtaaggct attgctttaa agggtgaaaa gcgtattcct gttgctttga ttggagatgg
    18361 tgctttaagt gcgggtatgg cctatgaggc tttaaatgaa ttgggtgatt ctaaatttcc
    18421 ttgcgtaata cttttaaatg ataatgaaat gagtatttca aaaccaattg gagcaatttc
    18481 aaagtatctt tctcaggcta tggcaacgca gttttatcaa agttttaaaa agcgtattgc
    18541 taaaatgttg gatatattgc ctgatagtgc tacttatatg gccaagcgtt ttgaagagag
    18601 ttttaaactt attacccctg ggcttttgtt tgaagaatta gggcttgaat atatagggcc
    18661 tattgatgga cataatttag gtgaaattat ttctgcatta aaacaagcaa aagctatgca
    18721 aaagccttgt gtgatacatg ctcaaaccat aaagggtaaa ggctatgctt tagctgaagg
    18781 aaaacatgct aaatggcacg gggtgggagc ctttgatata gatagtggag agagtgttaa
    18841 aaaaagtgat actaaaaaat ctgctactga aattttttct aagaatttgc ttgatttagc
    18901 ctcaaaatat gaaaatattg ttggggttac ggcggctatg ccaagtggaa caggtcttga
    18961 taagcttata gaaaaatatc caaatcgttt ttgggatgtg gctattgcag aacagcatgc
    19021 agtaacttct atggccgcta tggcaaaaga aggatttaaa ccttttattg caatatatag
    19081 cacctttttg cagcgtgctt atgatcaagt gatccatgat tgtgcgatta tgaatttaaa
    19141 tgtggttttt gctatggata gggcagggat agtaggcgaa gatggggaga cgcatcaagg
    19201 tgtttttgat cttagttttt tagctccttt gccaaatttc actcttttag ccccaagaga
    19261 tgaacaaatg atgcaaaata taatggagta tgcttattta catcaaggac ctattgcttt
    19321 gcgttatcct agagggagtt ttattttgga taaagaattt aatccttgtg agataaaact
    19381 tggtaaggca caatggcttg taaaaaataa tagtgaaatt gcttttttag gttatggaca
    19441 aggtgtggca aaagcgtggc aagtcttaag agccttgcaa gaaatgaata ataatgctaa
    19501 tttgattgat ttaatttttg ctaaaccttt agatgaagag cttttgtgtg agcttgctaa
    19561 aaaaagtaaa atttggttta tttttagtga aaatgttaaa attggcggta tagaaagttt
    19621 aattaataat tttttacaaa aatatgattt gcatgtaaaa gttgttagct ttgaatatga
    19681 agacaaattt attgaacatg gaaaaacaag tgaggtggaa aaaaatctag aaaaagatgt
    19741 caatagtttg ttgacgaaag ttttaaaatt ttatcattaa ataataaaaa atattattta
    19801 atataaactt cttttaatga aaattttatt attattttta cttaaaaaag caaggaataa
    19861 ataaaatgga attactacaa atgcttaaaa aacatgagtt aaaagctact ccgcaaagac
    19921 tatgtgtttt aaaaatttta aaaagacatg agcatcttaa tattgatgaa ttatatacag
    19981 aaattaaaaa agaataccct tcaatctctt tagcgacggt ttataaaaat cttaatactt
    20041 tacaagaaca aggtttagtt gttgaaatca atgttttaaa tcaaaaaact tgttacgata
    20101 tctatgaaga agaacatatt catgttgttt gcaccaaatg tggtggtata gaggatttaa
    20161 gttttaaaga tgctaagctt tatgaatatc aagagcattt agaaaaaaag ataggcaatc
    20221 tcgtcaatca tctgtctgtt tgtgcttatg ttgataattg caaaaagtgt cattaagcaa
    20281 aataaggtta aaataaccca tatattttaa gggttatttt aatggtttat gaaattcaaa
    20341 aaaacttttt actatctgat tgcactc
//
LOCUS       DAPOLW010000014        18268 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.014, whole genome shotgun sequence.
ACCESSION   DAPOLW010000014 DAPOLW010000000
VERSION     DAPOLW010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18268)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18268)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18268
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.014"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            31..445
                     /locus_tag="ROE18_000370"
                     /pseudo
     CDS             31..445
                     /locus_tag="ROE18_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853469.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            441..1250
                     /locus_tag="ROE18_000371"
     CDS             441..1250
                     /locus_tag="ROE18_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011812753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDX3650591.1"
                     /translation="MSFNITSNLVGITLGLILAESISNYFGNWRDSLSFYAWINLILL
                     ILWLFVGKDENKKEEKKNNAKDLIYALKSRVAWGMIIFYIGPILFLNSLFTFLPTFYA
                     QYASFSKELADFAKKEIPALANFAIIFGPYLGLFFKRKNISFKIMLLSGGACIFICGF
                     CMLFLQNLVLIQIFAVLSGIFYSMWFPFFFNLPSELKISNPNQTAYIMSAFWSITFVI
                     LSFNLWVVSWSIDKTHSFTLGFVYIFALIFISAILAQFVLPRRENFIQGEK"
     gene            1252..2403
                     /locus_tag="ROE18_000372"
     CDS             1252..2403
                     /locus_tag="ROE18_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDX3650592.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELYTAKLVAQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHTTSLLLAAKYLASQNFNGTLNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGRDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLVVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIATIKMSVRALDNETRKLTEEKIYKICK
                     GIAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNYRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLALKYLK"
     gene            complement(2407..3147)
                     /gene="yaaA"
                     /locus_tag="ROE18_000373"
     CDS             complement(2407..3147)
                     /gene="yaaA"
                     /locus_tag="ROE18_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HDX3650593.1"
                     /translation="MKILFSPSESKNENCTKNPIDENSFIFKELFPYRMEALKHYGEF
                     IKNASLKNLQELFGIKNENEIDKFKHDLKQAPTQEAIMLYTGISYEYLNFKILDKKSQ
                     AYILENTLIFSNLFGVVRANDTLPFYKFKQGAKIGNFTIEKFYKEHFSKALDEYLENE
                     EILDLRAGFYDKFYTPKKKFYTYKFVKNGKVISHFAKAYRGILLSISAKNQVKNNKEL
                     LANLPSNLKLKEIQIKGLKEEIALEILD"
     gene            complement(3240..4358)
                     /locus_tag="ROE18_000374"
     CDS             complement(3240..4358)
                     /locus_tag="ROE18_000374"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="JlpA-like lipoprotein"
                     /protein_id="HDX3650594.1"
                     /translation="MKKGIFLSIGIAVLFSACGNSIDEKTVKKYENQLNQTVKQEIAS
                     LSQDSGIKIEFSDFKCNADGDFIACLSPNFKTLAKDNNDEYQELFQAKNIKIRSNEIY
                     KGEANTSISIKEYYNDLFKNQKSIQSNLVFEDFKLGEKVVSDINASLFQQDPKISSLI
                     NKLSSDSYTLSFDNSINKQENNYIDNLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKG
                     IKFNTQTLAMDEQAINELLNIANYEQASDFSNTIQKYIILNNFKIDSTLKTEGVFSSY
                     ITTAKENLQTLKTQSQNEEQALIFDKALAILNNITQNDDYKLNLDLKFKNIPVSDYST
                     QGIDSIEKLSINNQDATEALKIILPFIMFSMLMGGASF"
     gene            4579..5418
                     /locus_tag="ROE18_000375"
     CDS             4579..5418
                     /locus_tag="ROE18_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HDX3650595.1"
                     /translation="MKKILLSVLTAFVAVVLAACGGNSDSKTLNSLDKIKQNGVVRIG
                     VFGDKPPFGYVDEKGNNQGYDVALAKRIAKELFGDESKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            5459..6706
                     /locus_tag="ROE18_000376"
     CDS             5459..6706
                     /locus_tag="ROE18_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDX3650596.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVMAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFIKVQNEKKIL
                     SFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYKICSIFSIAFIIFGMLFGFYDENFLFYFLLACFAQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYAILGFLTPFIVNAFYKEYLGIYLAIVGSCS
                     LLCVFLLKRVFARSKIKELSIVF"
     gene            complement(6689..7957)
                     /locus_tag="ROE18_000377"
     CDS             complement(6689..7957)
                     /locus_tag="ROE18_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HDX3650597.1"
                     /translation="MQNVIENFKQLCKIPHCSYETEQMKEFLSSYAKDKGFKVSVDKA
                     GNIHAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNGIGIAIMMS
                     AMAEFENLECLFTNDEEVGLMGVNLLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEA
                     SLSFNTLRKKGKIYELCAQNFKGGHSGINIIRNEKSSIKEMAKFIQENEGEIISFEGG
                     ERINSIPKHAKALVHFKDEVKSNNWIKCEFKEENEFEICDQSKKLLSLINSFTHGVRA
                     YDENLDIVQTSINLATLRMQDNQIKFALFARSNILDGLKQVEFETLEFFKAFDFKIRS
                     FNFYPPWEGKPNALSDMVFKALKKVSPNAKVSAIHAGLECGIIEKKQELLCASIGPNI
                     HNPHSTDEHCEIASVEKISKVVFEVLKDNA"
     gene            8025..8552
                     /locus_tag="ROE18_000378"
     CDS             8025..8552
                     /locus_tag="ROE18_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDX3650598.1"
                     /translation="MRINYKKIFNLRKLLSDPKKLFSVLIFTLVVVFIQNYIAQNSSF
                     EGKVVRIIDGDTIEVNHENKLARIRFFGIDAPELKQSFGKQSKEALSRILSGKQVEII
                     YKNKDTYGRIVAIVKLNDVDINRFLVSKGYAWADTYYSNAYTKEQENAKKNHLGLWKE
                     SNPIEPYKWRKHNKF"
     gene            8561..8734
                     /locus_tag="ROE18_000379"
     CDS             8561..8734
                     /locus_tag="ROE18_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDX3650599.1"
                     /translation="MKKYTLMVLLVLGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     DCPKNWVDIKMTP"
     gene            complement(8735..9313)
                     /locus_tag="ROE18_000380"
     CDS             complement(8735..9313)
                     /locus_tag="ROE18_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650600.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLAGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEVKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGAKINNPEAVAAALMASVGGK"
     gene            complement(9386..10276)
                     /gene="cmoB"
                     /locus_tag="ROE18_000381"
     CDS             complement(9386..10276)
                     /gene="cmoB"
                     /locus_tag="ROE18_000381"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HDX3650601.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYAKIQELKALNLACNFSLGDSVNL
                     STNSQAKDEILAIAKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIKYELLGVEDLPSY
                     SLKFDVIFCLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRVYIRIKI"
     gene            complement(10372..12096)
                     /locus_tag="ROE18_000382"
     CDS             complement(10372..12096)
                     /locus_tag="ROE18_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HDX3650602.1"
                     /translation="MLEQSPYKEDANSKNYNNTLKVKDGVIIIDHSNTSDDNNSKTIN
                     TKKNTQKNQPNLSNDNTLKTKTPNSNTPSLKNTSKEESIHKVSFSFHITNKNINFKDL
                     GLDEQVLQEALNDYKKESISVQDLQDIANIISYYVQVSGYPAATAYIPQQELKDQIQI
                     NITLGVLGKYVVQNNSSVRDYAIESKLPNHKGEIITTKLVEDAVYKVNEMYGIQTLAS
                     LKAGDNPGETDVVIETTPSDSFVSVLFYGDNYGIKESGRYRGGASMSFNNIAHQGDSL
                     NAYLQRSDEAQTNYSISYTTFLGNLKITPSYSKRNYALGGAYKNANFIGTSENLGIDL
                     KYPLWITTYNSFYLTSSYYHKKLSNSRLNIMTIDKSSDTISFSIEGVYNGISNDSFSY
                     SANVSYGNVKDGGTTILGMSSKTDGDGFGKFAKLNVNLNNAYFFNDTFTHLFSLNYQQ
                     VVNGATLDSSETISLGDPYGVRAYNNGDGEGDNAVVASFGLRMATPLKDFYITPFYDI
                     GYSWYENDSKLYRASETNYMDAYGLQLLYNKTGNFYVKLDLARALKKYKLDDDYSSKA
                     YVSFGKYF"
     gene            complement(12154..12294)
                     /locus_tag="ROE18_000383"
     CDS             complement(12154..12294)
                     /locus_tag="ROE18_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650603.1"
                     /translation="MLKMIKIQKVKSLLDLVKKLKNKQSLKIKNQTNTKENLNKTHYL
                     TI"
     gene            complement(12282..13921)
                     /locus_tag="ROE18_000384"
                     /pseudo
     CDS             complement(12282..13921)
                     /locus_tag="ROE18_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865998.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
     gene            complement(14290..16578)
                     /locus_tag="ROE18_000385"
     CDS             complement(14290..16578)
                     /locus_tag="ROE18_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650604.1"
                     /translation="MEKFCFKLSIVTFLSINAFAATQANTTDNRNFNIPEHYFNDNEL
                     YDKTNSTYKKLQGINYYAKSSKQYINNITLIYNNPKPNITNINDLNFKHYLLTPDMRE
                     DEVLSFKARHGVNTAGHSIKTVRVLPFLITAKTDHADASYNKLILEQGELSSVFYLKP
                     KDTHIKNPSNSKSNQRMNFLMSSTFTHYGNASYNQTILQKDAHISMGVENTYDLALNG
                     APYLIGAIATYGDSTNNSLNIEAGSSVEFFTSLPKKDKNGNNTFDERITHLVGGLAYQ
                     GNVKNNKIFIKDANMIIHGPSKAYASLAAAHISAGYIDSGTDKNFQASKNLLDIDGFN
                     LDMYMNHDKQPLAYNSVLFADFWGGKTEQGQALDNTINLKDIKNLKKDKNNENIFAQA
                     LFNFYAGASNNGEANYNTLNIELKHPLEIANNFLGYNQHSFYGGFATKGANHNTINIK
                     NDLTTTDLSQSYKDALNIVAARTLEGSADYNKVYINNSMSTLPVYIYTAKKNILNNQD
                     FYPSSANNNEVVIKDFASFRNLTVLTEAKEASYNTINYNNVQSITDVSNIDKGSKIII
                     RALDKANHNTIDIKNYSSNAADNAYLIMAYNEAAYNKIIINDTLFGVASDKREGILSI
                     IAGLSNNAHDNTLIINNLNLDEYKNNNSIFIAPSAITGLSEAKSYNNTLYIGGNLNIF
                     KNTFIDILAGALVHYEDNYSASNAAAPSDISLSKNNRLILNTKVEARIINNFEHYYLI
                     VSNKINTTPLLKSYDAPINISS"
     gene            16721..17095
                     /locus_tag="ROE18_000386"
     CDS             16721..17095
                     /locus_tag="ROE18_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HDX3650605.1"
                     /translation="MKMRVYYEDTDAGGVVYHSNYLKFCERARSEIFFNKKVDIFDAS
                     KGHFLLAKANCNFLKPAKLGDMIEIKTKILEVKNASVEILQEIYKDEILLFKMELTLA
                     FIKNEKPARMDMQLKKLFEELF"
     gene            complement(17087..18238)
                     /locus_tag="ROE18_000387"
     CDS             complement(17087..18238)
                     /locus_tag="ROE18_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650606.1"
                     /translation="MLNAKEQKLVDVKPVENFYPKLSVQECNTNCLFDLLESRLYLSF
                     LSEFADQNDQFLSNVYAKLLNSITDFEKNVQKITSVKLAIIIPEKTIKSYSNTIINSS
                     IAYLLRQRAEIKVKVFLTGTEDNDKIRAALDAAQAQGYQYAIAGFTLKGANELKNYSG
                     NMKIFIPTIHKNNIQISNQNIIFGSIDYDAQIATLLSKSNANIAIFSDGSALSSNLNS
                     RILAQNNNARIYTIEGEKLDFSRLLRSQGGVNNASIFFNTPLIKTALASSQLRIYNIH
                     PYVLLSTQINYNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNEIFNQSIDYNWIAY
                     ATSIGVDYFYTEFLNKKSESLFDEKIKNSQVDYKVRLMQGKQASFEELK"
BASE COUNT         5793 a         2534 c         2894 g         7047 t
ORIGIN      
        1 ttttaataaa tatctaaaaa ggattttaat atggaaaaat cacttttatt tcattttaga
       61 cgcattggag ttgaatttat catttttagt gtttatgctg tttttagtat ctcttgggca
      121 gcaacagggt ctttaatgcc tttgatttca aatgatcttg ccctaaatac tcagcaagct
      181 actttaatca ctagtatgat agtagttgcg aaaatttttg gtgcttcatt tactgctttt
      241 ttggtttata aattcggatt aaaaaaggga tattttttag gctgtatttt aatgagttcg
      301 ggtatctttt taagttttgt agatagttat agtggtattt tgattataag atttttaaca
      361 gggcttggtt cagcttgtgc tttagtttgc ttagtgccta ttgcacagca atggtttgaa
      421 aaaaagcttt gcattttgta attagtttta atataacttc aaatttagta ggcattactc
      481 taggacttat tttagctgaa agcatctcaa attattttgg aaattggaga gattctttat
      541 cattttatgc ttggattaat ttgattttat tgattttgtg gctttttgta ggtaaagatg
      601 agaataaaaa agaagaaaaa aagaataatg caaaagatct tatttatgct ttaaaatctc
      661 gtgttgcttg gggtatgatt attttttaca tagggcctat tttattttta aattctcttt
      721 ttactttttt accaactttt tatgcacaat atgcgagttt tagtaaagaa ttagctgatt
      781 ttgctaaaaa agaaattcca gctttggcta attttgctat tatttttggt ccttatcttg
      841 gattattttt taaaagaaaa aatatctctt ttaaaataat gctattgtct ggaggagcgt
      901 gtatttttat atgcggattt tgtatgttgt ttttgcaaaa tttagtattg atacagattt
      961 ttgctgtgtt atcaggcatt ttttattcta tgtggtttcc atttttcttt aatctacctt
     1021 cagaattaaa aatttccaat ccaaatcaaa ctgcttatat tatgagtgct ttttggagta
     1081 ttacctttgt tatactatca tttaacctat gggtagtatc ttggagtatt gataaaaccc
     1141 atagttttac tttgggtttt gtttatattt ttgctttgat ttttatttca gcgatcttag
     1201 cacaatttgt tttgcctaga agagaaaatt ttatacaagg agaaaaatag aatgaattta
     1261 attccagaaa tactagactt acaaggcgaa tttgaaaaaa ttcgtcatca aattcatgaa
     1321 aatcctgagc ttggttttga tgaattatat actgcaaaat tagtggcaca aaaattaaaa
     1381 gaatttggtt atgaggttta tgaagaaata ggaaaaacag gcgttgtggg ggttttaaaa
     1441 aaggggaata gcgataaaaa aataggactt cgtgcagata tggatgcttt gcctttgcaa
     1501 gaatgcacaa atttgcctta taaaagcaaa aaagaaaatg taatgcatgc ttgcggtcat
     1561 gatggacata ctacttcttt attgcttgct gcaaagtatt tagcaagtca gaattttaat
     1621 ggtactctaa atctttattt tcaacctgct gaagagggct tgggtggtgc taaggcaatg
     1681 atagaagatg gattgtttga aaaatttgat agtgattatg tttttggatg gcacaatatg
     1741 ccttttggta gagataagaa attttatctt aaaaaaggtg cgatgatggc ttcttcggat
     1801 agttatagca ttgaagttat tggaaggggt ggtcatggaa gtgctccaga aaaggcaaaa
     1861 gatcctattt atgccgcttc tttgcttgtt gtggctttgc aaagtatagt atctcgcaat
     1921 gttgatcccc aaaattcagc agttgtaagc ataggagctt ttaatgcagg gcatgctttt
     1981 aatatcattc cagatattgc aacgattaaa atgagtgtta gagcattaga taatgaaact
     2041 agaaagctaa ctgaagaaaa aatttataaa atttgtaaag gtattgctca ggccaatgat
     2101 atagaaatta aaatcaataa aaatgttgtt gcaccagtga ctatgaataa cgatgaggcc
     2161 gtggattttg ctagtgaggt tgcaaaagaa ttatttggcg aaaaaaattg tgaatttaat
     2221 tatcgtcctt taatggcaag tgaggatttt gggttttttt gcgaaatgaa aaaatgtgcc
     2281 tatgcttttt tagaaaatga aaacgacatt tatttacata attctagtta tgtttttaat
     2341 gataaacttt tagctagggc tgcaagttat tatgcgaagc tagctttaaa atacttaaaa
     2401 taaaaactaa tctagaattt caagcgcaat ttcttccttt aaacctttga tttgaatttc
     2461 tttgagtttt agatttgaag gaaggtttgc taaaagctct ttattgtttt ttacttggtt
     2521 ttttgcactt atggagagta aaattccccg gtaagcttta gcaaaatgac tgatgacttt
     2581 accatttttt acaaatttat aggtataaaa tttctttttt ggggtataga atttatcata
     2641 aaatcctgct ctaagatcaa gtatttcttc attttccaag tattcatcta aggctttact
     2701 aaaatgttct ttataaaatt tctctatggt aaaatttcct attttagccc cttgcttgaa
     2761 tttataaaag ggtagggtat cattagctct tacaacgcca aaaagattag aaaatataag
     2821 agtattttct aaaatataag cttgactttt tttatctagg attttaaaat taagatattc
     2881 ataacttatc ccagtgtaaa gcattatagc ttcttgagtg ggagcttgtt ttaagtcgtg
     2941 tttaaattta tcaatttcat tttcgttttt aatgccaaaa agttcttgta aattttttaa
     3001 acttgcattt ttgataaatt ctccataatg ctttaaagct tccattctat aaggaaataa
     3061 ttctttaaat ataaatgagt tttcatcgat gggatttttt gtacaatttt catttttgct
     3121 ttcactaggg gagaataaaa ttttcatttt agcctttttt gttaatgtta tgaaaacatt
     3181 aagagcaaag aaatttaatc ttgcttttaa tgtttttgaa gtttttatca ttttaaaatt
     3241 taaaatgacg ctccgcccat taacatagaa aacatgataa atggaagtat aatttttaac
     3301 gcttctgtgg catcttgatt gttgatgctt agtttttcta tgctgtcgat tccctgtgtg
     3361 ctatagtcac taacagggat gtttttaaat tttaaatcaa gattgagttt ataatcatcg
     3421 ttttgagtga tattatttaa aatagctaaa gctttatcaa agattaatgc ttgttcttca
     3481 ttttgacttt gagtttttaa ggtttgtaaa ttttccttag cagttgttat atagctacta
     3541 aatacgcctt cggttttaag agttgaatca attttaaaat tgtttaagat gatgtatttt
     3601 tggattgtat tgctaaaatc tgaagcttgt tcgtagtttg ctatattaag aagttcattg
     3661 atagcttgtt catccatagc taaagtttga gtgttaaatt ttataccctt agaatcaagg
     3721 taattaagca aatcttcttt tagatttata tttaaatttg tattgaaatt taattttgcg
     3781 ttataaaatt ttatatcaag attatctata taattgtttt cctgtttgtt gatggagttg
     3841 tcaaatgata aagtataaga atctgagctt aatttattga tcaaagagct gatttttgga
     3901 tcttgttgaa ataagcttgc attgatgtca ctaacaactt tttctccaag tttaaaatct
     3961 tcaaaaacca aatttgattg tatgcttttt tggtttttaa aaagatcgtt gtaatattct
     4021 ttaatgctaa ttgatgtatt tgcttcgcct ttgtaaattt catttgaacg aattttgata
     4081 ttttttgctt gaaatagttc ttgatactca tcgttattat cttttgcaag agttttgaaa
     4141 tttggactta aacacgctat aaaatcacca tctgcattgc atttaaaatc agaaaattca
     4201 atctttattc cagagtcctg agaaagactt gcaatttctt gtttaactgt ttgatttagt
     4261 tgattttcat attttttaac tgttttttca tctatggaat ttccgcaagc tgaaaacaaa
     4321 acagctattc caatagagag aaaaatacct tttttcatag ttttctcctt aaaaatttta
     4381 aaaaaagatt atatcttttt ttacttaaaa tttaaacaat gctaaaagag agtgtgggat
     4441 taattacatt tttacacata ggaaaatctt tttagtttgt ttcaaatgta ttatttataa
     4501 ttttaagtat aattaacttt gcaattatta tatatttttg caacagcttt aagcttattt
     4561 tttaaagaaa ggaaatgtat gaaaaaaata cttctaagtg ttttaacggc ctttgttgca
     4621 gtagtattgg ctgcttgtgg aggaaattct gactctaaaa ctttaaattc tcttgataag
     4681 atcaagcaaa atggagttgt taggattggg gtatttggcg ataaaccacc ttttggttat
     4741 gtagatgaaa aaggaaacaa tcaaggctat gatgtagctt tagctaaacg catagcaaaa
     4801 gaactttttg gagatgaaag caaggtacaa tttgttcttg ttgaagctgc aaatagggtt
     4861 gagtttttaa aatcaaataa agtagatatt attttggcta attttactca aactccgcaa
     4921 agggcagagc aggttgattt ttgctcgcct tatatgaagg tagctttagg cgtagctgta
     4981 ccaaaggata gtaatataac tagcgtagaa gatttaaaag ataaaacctt gcttttaaac
     5041 aaaggcacaa cagcagatgc ttattttacg caaaattatc ctaatattaa aactttaaaa
     5101 tatgatcaaa ataccgaaac ctttgccgct ttgatggata aaagaggcga tgctttaagt
     5161 catgataata ccttgctttt tgcttgggtg aaagatcatc ctgattttaa aatgggtatc
     5221 aaagagttag gtaacaaaga tgttatcgca ccagcggtta aaaaaggcga taaagaactt
     5281 aaagaattta tcgataattt aatcattaaa ctaggccaag agcagttttt tcacaaggct
     5341 tatgatgaaa ctttaaaagc tcattttgga gatgatgtta aggctgatga tgtagtgatt
     5401 gaaggtggaa aaatttaata aagggctttt tgccctttat attgatttag gataaaatat
     5461 gcaaaaaaaa tacaaaaata ttatttatgc ttctttgggt ggaattttag aattttatga
     5521 ttttgtgctt tttgcctttt ttttggatat ttttgctaag gtattctttc cgcaaaatga
     5581 tgctttttgg atgcagataa atgcttatat agcctttggt gctgcttatt tagcgcgtcc
     5641 ttttggttct attgtgatgg cacattttgc tgatagatat ggaagaaaga atatttttta
     5701 tatttctatg cttttgatgg ttttgcctag ttttgcttta gcttttttac caagttatga
     5761 aagtataggt atatttgcta ctttgatttt atttactatt cgtattttgc aaggtttagc
     5821 cgttggaact gaggtgagcg gagcttggat ttatgtgagc gaatttgtta aagggcgtca
     5881 aattcctttg gctcttggtt ttatttcagc gactttaacc ataggtttat tgctaggaaa
     5941 tattgccact ttgggcataa gatcttattt taccccagaa gaagttcaaa gctatgcttg
     6001 gagaattcct tttatcatag gaggattttt tggaatttta gctttgtttt taagaaataa
     6061 actcagcgaa actccagaat ttataaaagt tcaaaatgaa aagaaaattt taagttttcc
     6121 attgtttgaa gctttgaaaa ctcataaaat gagtatgctt gtttgttttt taatgaccat
     6181 ggttttaaca agcggtgtgg caactttgat gattttgcct aagtattttg aaagtctttt
     6241 agctatgagt aaaacttctg ctttatgggt gcaaaatttt gctattttag cggtgatttt
     6301 tggagcttta tttcaaggtt ttttagcaag caaatgggga agctataaaa tttgctctat
     6361 ttttagtata gcttttatta tctttggtat gctttttggt ttttatgatg agaatttttt
     6421 attttatttt ttactggctt gttttgcaca aggtattatt actttcgcgc ctgtttttat
     6481 gacgcaaatt tttaaaagcg aacttaaatt tagcgggctt agttttgctt ataatatttc
     6541 ttatgcgatt ttaggttttt taaccccttt tatagttaat gctttttata aagagtattt
     6601 aggtatttat cttgctatag tgggatcttg ctccttgctt tgcgtgtttt tgttaaaacg
     6661 cgtttttgca agaagtaaga ttaaagaatt aagcattgtc ttttaaaact tcaaaaacaa
     6721 ccttagatat tttttcaact gaagcgattt cacaatgctc atcagttgaa tgaggattat
     6781 ggatatttgg gcctatagaa gcgcataaaa gctcttgttt tttctctata atgccacact
     6841 caagccctgc atggatagct gaaactttgg cattaggcga tactttttta agtgctttaa
     6901 aaaccatgtc gctaagtgcg tttggtttac cttcccaagg tggatagaaa ttaaaacttc
     6961 ttattttaaa atcaaaagct ttgaaaaatt ctaaagtttc aaattctact tgcttaagtc
     7021 catcaagtat attagatctt gcaaaaagtg cgaatttgat ttggttatct tgcattctta
     7081 aagtagctag gttaatgctt gtttgaacta tatctagatt ttcatcataa gctctaactc
     7141 catgagtgaa agaatttata aggcttaaaa gttttttact ttgatcgcaa atttcaaatt
     7201 cattttcttc tttaaattcg cattttatcc agttattact ctttacttca tctttaaaat
     7261 gcactaaagc tttggcgtgt ttaggtatag aattgattct ttctccgcct tcaaaagaaa
     7321 tgatttctcc ttcattttct tgtatgaatt tagccatttc tttgatggaa cttttttcat
     7381 tgcgtatgat atttatgcct gagtgtccac ctttaaaatt ttgcgcacaa agctcgtaaa
     7441 ttttaccctt ttttctaagg gtattaaaag acaaacttgc ttctatatct actccacctg
     7501 cacagcctat catgatctca tcatcgcttt catgatctaa atttaaaagc attttagatt
     7561 ctaaagtgtg ctcgagtaaa ttcactccca tgagtcctac ttcttcatcg tttgtaaaaa
     7621 gacattctaa attttcaaat tcagccatag cactcatcat gatggctata cctatgccat
     7681 tatctgcacc aagacttgaa tttttggctc ttaaaaagcc attttcttca taaacttcta
     7741 agtttggtgc atcgcccata cagaccatat cataatggct ttgtagacaa atttttggtt
     7801 tgccttttat ggcatggata tttcctgcct tatctacact caccttaaag cctttatctt
     7861 tggcgtaaga gcttaaaaat tctttcattt gttctgtttc ataactgcaa tgaggaattt
     7921 tgcataattg tttaaaattt tctataacat tttgcatttt atctcctttg ttttgataaa
     7981 attatggcat attttttaaa atttaaaggc aaaatgatta aaaaatgaga ataaattata
     8041 aaaaaatatt taatctgaga aaattactaa gtgatccaaa aaaacttttt tctgtattaa
     8101 tcttcactct tgtagttgtt tttatccaga actatattgc ccaaaattct agttttgaag
     8161 gaaaagtagt tagaattatt gatggagata ctatagaagt taatcatgaa aacaaactcg
     8221 ctagaataag atttttcggt atagatgcac cagaacttaa acaaagtttt ggaaagcagt
     8281 caaaagaagc tttaagtaga attttaagtg gcaaacaagt tgaaattatt tataaaaata
     8341 aagatactta tggtagaatt gttgctattg taaagcttaa tgatgttgat attaatcgat
     8401 ttttggtaag caaaggctat gcttgggctg atacttacta tagtaacgct tataccaaag
     8461 aacaagaaaa tgctaagaaa aatcatttag gtctttggaa agagagtaat cctatagagc
     8521 cttataaatg gagaaaacac aataaattct aaggaaaaac atgaaaaaat atactttaat
     8581 ggtgctatta gttttaggaa tttctggatg ttttgtaaat gaaagaggga tttcaaatcg
     8641 tttttatgat gattgtaaag agtattatga tggaagcgga acttatcata aggattgccc
     8701 aaaaaattgg gtagatatta aaatgactcc ttgattattt tccacccaca gaggccatta
     8761 atgcagctgc tacggcttct ggattgttga ttttggcacc ttgttcttga ttttctgtag
     8821 gtttaacagt gttaagtggc ggacgcttga gtttaaatat atgctcatcg gtgctaacaa
     8881 cttgtatcgt tccttcaaac attttaactt ctttaacatg tccaaccact tttacatctc
     8941 tttttttgga ggtttcgtca aaaagtgcat gagcttcaag ttctaaaaca tcgcctaatt
     9001 taagcggagc ataaaaaaaa cattttgatc caataatcac tgaaaattct ttattgatag
     9061 aggcttgtgc tacatagttt gctgcagcga aaataaaggc atcaaaaatc aatccttgat
     9121 catctgctac catttcgctt gtggttatta aaattgattt ggcatagttt ttatcaattt
     9181 cgataatggt tccagcaagt gaggtgttta attcaggaca agtgagtaat tctgctctaa
     9241 cgcgagatat atcttctgca gatgcgtatt cttcaagttg tgcatattct tcaaaattat
     9301 ctttttttgc catatctaac ctttaaattc tacttatcta cttcaaaata tctaaaattc
     9361 aatatcggca aaaaataaaa agaatttata ttttaatgcg tatataaact cttttgggtg
     9421 cttcatagcc ttcaatggta agatttttat cctttggatc taagaaattt tccagcgaaa
     9481 aagagtctat ccattctgtt tttctttgtt cgttttcatc ggtttttttt gtagccaaaa
     9541 cttcaaattc tttaaatcct gctctttcac accagttttt taatgcacta atgcttggta
     9601 caaaataaat atttggaatt ttagaataag ttttattagg cacaagagcg atttctctct
     9661 catcttctat atacatggta tctaaaaaaa caactccatt tttattaagt cctgctttta
     9721 aatcttttag catttttata ggatcacttc tatgataaat caccccaaga cagaaaatca
     9781 catcaaattt caagctatag cttggaagat cttctacgcc taaaagttcg tattttatag
     9841 gagttttagc taaagcgtta atgagttcaa attgcaaacg gtatttgata gaaggatcaa
     9901 aacctatgag ttttgcagga ttaaattcaa gcattttaaa catataataa ccattattac
     9961 agcctatatc agcaacgcat ttttgagaaa tttcgttcat gaaaggcttt agaatgttga
    10021 atttaataaa actttgccat tctgtatcga tgaaaagatc gtctatttta aaaggacctt
    10081 ttctccatgg tttaagttct tttgctatag ctaagatttc atctttggct tgagaatttg
    10141 tagataaatt cacgctatcg cctaaagaaa aattacaagc aagattgaga gctttaagtt
    10201 cttgaatttt agcgtataaa gggtgattta gaaattgttt ttcaagtaaa ttttcttgca
    10261 tttttatcct tgacatttgc ttttaatgct aaattataac attaaaagct tttatggcaa
    10321 tataaatctc atatgcatta agtatttgat caaaaataaa tttttaaaaa ctcaaaaata
    10381 cttcccaaag cttacataag ctttagaact ataatcatca tctagtttat atttctttaa
    10441 agctctagct aaatcaagct tgacataaaa attccctgtt ttattataaa gcagttgtaa
    10501 accataagca tccatatagt ttgtttcact tgctctatat agtttagaat cattctcata
    10561 ccaagaataa cctatatcat aaaaaggagt gatataaaaa tcttttaaag gagtagccat
    10621 tctaagtcca aagctagcca ctacagcatt atctccttct ccatctccat tattataagc
    10681 ccttactcca taaggatctc ctaaagatat agtttcacta ctatctaatg tagctccatt
    10741 gacaacttgt tgataattta aactaaaaag atgagtaaaa gtatcattaa agaaataagc
    10801 attgttaaga ttgacattga gtttagcaaa ttttccaaag ccatctccat ctgttttaga
    10861 actcattcct aatatagtag ttcccccatc tttaacatta ccatagctta cattagcact
    10921 ataagaaaaa ctatcattac taatgccatt ataaactcct tctatactaa agcttatcgt
    10981 atcagagctt ttatctatag tcatgatatt taatcttgaa ttactaagct ttttatgata
    11041 ataacttgaa gttaaataaa aagaattata agtcgtaatc cacaaaggat attttaaatc
    11101 tatacctaga ttttcagaag ttcctataaa gtttgcattt ttataagctc ctcctaaagc
    11161 atagtttctt ttagaataac ttggagtgat ttttaaattc cctaagaaag tagtatagct
    11221 tatactatag ttagtttgtg cttcatcgct tctttgcaaa taagcattaa gactatctcc
    11281 ttgatgagct atgttattaa aactcatact ggcaccaccc ctatatctgc ctgattcttt
    11341 tataccgtaa ttatccccat aaaacaatac agaaacaaag ctatcactag gggtagtttc
    11401 tatcactaca tctgtttcac ctggattatc tcctgctttt aaagaagcaa gggtttgtat
    11461 gccatacatt tcattgactt tataaactgc atcttctact aatttagtag tgatgatttc
    11521 acctttgtga ttaggtaatt tactttctat agcataatct cttacactag aattgttttg
    11581 aaccacatat ttacctaaaa cacctaaggt gatattgatt tgaatttgat cttttagttc
    11641 ttgttgtggg atataagctg tagcagcagg ataaccacta acttgaacat aataagaaat
    11701 gatattggct atatcttgta agtcttgaac tgaaatactt tcttttttgt aatcgtttaa
    11761 ggcttcttgt aaaacttgct catctaaacc tagatcttta aagtttatgt ttttattggt
    11821 aatatgaaag ctaaagctaa ctttatgaat tgattcttct ttagaagtat tttttaaaga
    11881 aggagtgttt gaatttgggg ttttagtttt taaagtatta tcattagaca agttaggttg
    11941 atttttttga gtgtttttct ttgtgttgat ggtttttgaa ttattatcat cactagtatt
    12001 agaatgatct atgataatca ctccatcttt tacttttaaa gtgttgttgt agttttttga
    12061 gttagcatct tctttataag gagattgttc taacatttgt atggtttttt attatcttta
    12121 gtatcactag cataaaggct taagatagct aaactagata gtaagataat gcgttttatt
    12181 taaattttcc ttagtgtttg tttgattttt aatctttaaa ctttgtttgt tttttaattt
    12241 tttaacaaga tccaaaaggc ttttaacctt ttggatttta atcatcttga gcaaggattt
    12301 cctgctttaa aattatccga tactatacaa cattaccact ttcttgagta ctggcttcat
    12361 ctatacttgc ttgtttatca tcttcattga tatttggatc ttcatctgta gtttgtataa
    12421 aaagctgtag caatgccagg ttcttgttgt cctatggtat catttgggtt attattagaa
    12481 ccgttgttgt tgctattgtt aatatcacct gaatcggttc catcgtttct gttgttggag
    12541 ttgttagatc ctaaatttat aatggatact ggcttatagt ttgcactata ttttcattga
    12601 ctgtaagatg actagttcca tttatgctcg cacttgctaa ggttttatta gaattttcta
    12661 aactagaatt agtactcgct gtagcgattt gaagagctat tgtagcttgt tgtaaatcac
    12721 tagaaacttt atctacagct tgttttaaac ctgcaataac tttatcgcca ttattacctg
    12781 ttataccact tagagctgta ttgtaagctt taactgcttc attataagca tttgcagcag
    12841 tatcgtaagt tttttgagcg ttttcttgcc cttcggtcat tttaggaatt ttgagaaaga
    12901 atttcctttg ttttaataat ggcttgttta gcttttccta gatcaccata agaatttccc
    12961 aatacttcct ttaaagcgtt tgcaaatgtt gcattattgc tatcttgagt ttgtccatat
    13021 aaagcagtaa taaaatccat actttgatta atgcttgtta gttcatcagc tgttaatatt
    13081 tttccatctt tataaaattt acttaagtcg ctaatatcaa cactagaatt aaatttcaag
    13141 tcattaaata tagaatttaa aacttcattt gagatgttat ctttagcaat aagatcgcta
    13201 gtttctttat agcctattgt gtctgttgga tctcctcctg gtccagttaa gcctttatta
    13261 gatcttatac tcaatattac agagtcttct tttttattgt atttgatgca ggaccacgaa
    13321 tgacaaatgt atcattacta tagacattaa gatagacggt attggattgt tcttttttat
    13381 ttgtaaaaat gaatttacca taatcagtgc caccatattt catatttgaa acttgattgc
    13441 ctgccatagc aactctttct cctaccgtta tagtttctaa atttataaca tttcctgcat
    13501 tggatttaat tacaggtgat attgttttag gatttccttt aaatgctgaa agttttccat
    13561 cttttgtaaa ctccttcatc tccttatcac ctattgatga agcagacaga acaatttttt
    13621 tccaccttta cccactacta tgccattagg attgattaaa aagatattat tgcttccact
    13681 attgagtgtt ccatctataa tgagagcttt tagaaccata gacaatattt aaataatttt
    13741 ggttagtttt tccttgtcca aaatttacag tttcattact tgctatatta aaaccaccac
    13801 taacacttat acttccactt gttccatgag tgaacttacc cccacttggt aaagcatagc
    13861 tttgtgtaaa aagtaaagaa cctacaacta aagacaaaga aagtttattt aactttttca
    13921 tgacttgctc ctttttgtaa gattaagatt taagaatctt ttgtttatat ttataaaaat
    13981 acaaataaat cattcctatc ttaaaaatag gaatgattta ttttatcctt gcataaatgt
    14041 ttttgtcatc ttgagatatt cttgcttcat aagaaagctt ttgtaggttc atattttcta
    14101 atctatctat agaacttagt ttaaaatctt ctttgttttt tgcatttttt caataaagct
    14161 ttgaagttct tcttgattta aaatattaga gttttcatct ataaaacctt gctcacttta
    14221 taagattaag atttctttat ttttaatata agggtattac tctttgaggg tgtaaagagc
    14281 taatactccc tagctagaaa tattaatagg agcatcgtat gacttcaaaa ggggagttgt
    14341 gttgatttta ttggatacaa taagataata atgctcaaag ttattaataa ttctagcttc
    14401 aactttagta tttaaaatca gtctattgtt tttacttaaa ctgatatctg aaggagctgc
    14461 agcattagaa gcactataat tatcttcata atgcaccaac gctcctgcta atatatctat
    14521 gaaagtgttt ttaaatatat ttaaattccc acctatatat aaggtattat tataagattt
    14581 agcttcactt aaacctgtaa tggctgaagg agctataaaa atagaattgt tatttttgta
    14641 ctcatcaaga ttaagattgt ttatgattaa ggtattatca tgggcattgt ttgaaagtcc
    14701 agctataata cttaaaattc cttctctttt atctgaagct acaccaaata aagtatcatt
    14761 gataatgatt ttattataag cagcttcatt ataagccata atcaaataag cattatcagc
    14821 tgcattagaa gaatagtttt ttatatctat agtattatga ttggctttat ctaaagctct
    14881 tatgatgatt ttagaacctt tatctatatt acttacatcg gtaatgcttt gaacattgtt
    14941 ataatttata gtattataag aggcttcttt agcttctgtt aatacagtta aatttctaaa
    15001 agaagcaaag tctttaatca ctacttcatt gttattagca ctactaggat aaaagtcttg
    15061 gttattaaga atgtttttct tagctgtata aatgtataca ggtaaggttg acatagaatt
    15121 attaatataa actttattat aatccgcact gccttctaag gttctagcag ctacaatatt
    15181 taaagcatct ttatagcttt gagaaagatc ggttgtggta agatcgtttt taatgttaat
    15241 ggtattatga ttagctcctt tagttgcaaa gccaccataa aaagaatgtt ggttataacc
    15301 taagaagtta ttagcgattt ctaaaggatg ttttaattct atgtttaagg tattataatt
    15361 tgcttctcca ttattagaag ctcctgcata gaagttaaac aaagcttgag caaaaatgtt
    15421 ctcattgttt ttatcttttt ttaggttttt aatatctttt aaattgatag tattatctaa
    15481 ggcttgtcct tgttcggttt ttccacccca aaaatcagca aataaaacag aattataagc
    15541 taagggttgt ttatcatggt tcatatacat atcaagatta aaaccatcta tgtctaaaag
    15601 gtttttactg gcttgaaagt ttttatctgt tccactatct atataacctg cgctaatatg
    15661 agcagcagct aaactagcat aagctttgct tggaccatgg ataatcatat tagcatcttt
    15721 gataaagatt ttattgtttt ttacattacc ttgataagct aaaccaccta caaggtgagt
    15781 gattctttca tcaaaggtat tattaccatt tttatctttt ttaggtaagg aagtaaaaaa
    15841 ctctacactg ctacctgctt ctatatttaa actattattt gtagaatctc cataagtggc
    15901 tatagctccg attaaataag gagcaccatt taaggctaaa tcataagtgt tctcaactcc
    15961 catactaata tgggcatctt tttgaagtat ggtttggtta tagcttgcat taccataatg
    16021 agtaaaggta gaactcatta agaaattcat gcgttgattg cttttagaat tactagggtt
    16081 ttttatatga gtatctttag gtttaagata aaaaactgaa ctaagttctc cttgttctaa
    16141 tataagttta ttataacttg catcagcatg atcggttttt gctgtgatta aaaaaggaag
    16201 cactctaact gtttttatac tatgaccggc tgtattaaca ccatgccttg ctttaaaaga
    16261 aagaacttca tcttctctca tatcaggagt aagtaaataa tgtttaaaat ttaaatcgtt
    16321 tatatttgta atatttggtt taggattgtt atatattaaa gtaatattgt taatatattg
    16381 tttagaactc ttagcataat aatttatacc ttggagtttt ttataagtag aattggtttt
    16441 atcataaagt tcgttatcat taaaataatg ctctggaata ttgaaatttc gattgtctgt
    16501 agtatttgct tgagtggctg caaaagcgtt gatgcttaag aaggtaacaa tagaaagttt
    16561 aaaacaaaat ttctctatac cccctccccg tgaagttaaa aagctttatt aaattaagat
    16621 tgggcggaat tttttaatat aaactaaaaa gcgatatcaa agaatttccg ttgtataatc
    16681 taatgttttt taaatgtaaa atatttttta aggtaaagcg atgaaaatgc gtgtgtatta
    16741 tgaagatact gatgcgggtg gagtggtgta tcatagtaat tatttaaaat tttgcgagag
    16801 agcaagaagt gaaatttttt tcaataaaaa agtagatatt tttgatgcgt ctaagggaca
    16861 ttttttgctt gcaaaagcaa attgcaattt cttaaaacct gcaaaacttg gagatatgat
    16921 agagattaaa acaaaaattt tagaagtcaa aaatgcttct gtggaaattt tacaagaaat
    16981 ttataaagat gaaattttgc tttttaaaat ggaattaact ttagctttta ttaaaaacga
    17041 aaaaccagct agaatggata tgcagttaaa aaagctcttt gaagaattat tttaattctt
    17101 caaagcttgc ttgtttgcct tgcataagac gcactttgta atcaacttga gaatttttga
    17161 ttttctcatc aaataaactt tcgctttttt tatttaagaa ttcggtataa aagtaatcaa
    17221 ctcctatact agtagcataa gcaatccagt tataatctat actttgatta aaaatttcat
    17281 taagatagac taggttatca tcgtggttat tgatagaatt agcaatgata aaattttctc
    17341 tatctccttg ttgtgttaaa cttaaaaatg ttggattata gttgatttga gtggataaaa
    17401 gcacataagg atgaatgtta taaattctta gctgagaact tgctagagct gttttgatca
    17461 atggagtgtt aaaaaatatt gaggcattat taactccacc ttgtgatctt aaaagcctgc
    17521 taaaatcaag cttctcgcct tctatggtat atattctagc attattattt tgagcaagaa
    17581 ttcttgaatt tagattgctt gataaggcag agccatcgct aaatattgcg atattagcat
    17641 ttgatttgct taaaagtgtg gcaatttgag catcatagtc aatacttcca aaaataatat
    17701 tttgatttga aatttgtatg ttgtttttat ggatagtcgg tatgaaaatt ttcatatttc
    17761 ctgagtaatt tttcaactca ttagcacctt ttaaggtaaa tccagctatg gcatactgat
    17821 atccttgagc ttgtgctgca tcaagcgcgg ctcgaatttt atcattatct tctgtgccgg
    17881 ttaaaaaaac ttttactttg atttcagctc tttgtcttaa aagataggct atgcttgaat
    17941 ttattatagt atttgagtag ctttttatgg ttttttctgg gataattatc gcaagtttaa
    18001 cagaagtaat tttttgaaca tttttttcaa aatcagtaat ggaatttaat aattttgcat
    18061 aaacattaga taaaaattga tcgttttgat ctgcaaattc acttaaaaaa ctaagataca
    18121 atcttgattc taaaagatca aaaagacaat ttgtgttgca ttcttgaacg cttaatttag
    18181 gataaaaatt ttcaactggt tttacatcga ctaatttttg ctcttttgca ttaagcaaaa
    18241 agcaagataa gaaaaatatt aaaaatat
//
LOCUS       DAPOLW010000015        18032 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.015, whole genome shotgun sequence.
ACCESSION   DAPOLW010000015 DAPOLW010000000
VERSION     DAPOLW010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18032)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18032)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18032
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.015"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..1092)
                     /locus_tag="ROE18_000388"
     CDS             complement(<1..1092)
                     /locus_tag="ROE18_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C biogenesis protein"
                     /protein_id="HDX3650607.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWAMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSDPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEINDISFV
                     VKAASLHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTFGEPQNWKNSLLLHFK
                     DFALSNENKNLELTGSNALKLELSYKNESK"
     gene            complement(1110..1805)
                     /locus_tag="ROE18_000389"
     CDS             complement(1110..1805)
                     /locus_tag="ROE18_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDX3650608.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            complement(1792..2562)
                     /locus_tag="ROE18_000390"
     CDS             complement(1792..2562)
                     /locus_tag="ROE18_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDX3650609.1"
                     /translation="MILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFAYEKATSLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAGLIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVIAAYLGDFDANS"
     gene            complement(2559..3611)
                     /locus_tag="ROE18_000391"
     CDS             complement(2559..3611)
                     /locus_tag="ROE18_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HDX3650610.1"
                     /translation="MMVRIKVSHLIFLIASIIFIFISPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGVTGQFSLEPNGFVAIGAYAAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIVAGICSSLLALILAFAVFRVRGDYLAIVTLGFGIIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLNLDIQSTPGLRMVVFSIVLILVMLFARKGIMGYYEL
                     SDVIRGIKKRFKRSKK"
     gene            complement(3611..4507)
                     /locus_tag="ROE18_000392"
     CDS             complement(3611..4507)
                     /locus_tag="ROE18_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HDX3650611.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFLGALSLAMIFAACVGIATDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNMLFTSTPRTFTPPSYFEESVNFGGVITTYGSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            complement(4526..5635)
                     /locus_tag="ROE18_000393"
     CDS             complement(4526..5635)
                     /locus_tag="ROE18_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDX3650612.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSALSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNATRSVVVKEIKNQKQNYKDIINP"
     gene            complement(5657..6772)
                     /locus_tag="ROE18_000394"
     CDS             complement(5657..6772)
                     /locus_tag="ROE18_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDX3650613.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDSFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLAAGDGVNNQTFIDLGGSAVNGVIFTDSFDYNNPSTQ
                     LGKDFVAAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVDNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQNQKQNYKTIINP"
     gene            complement(6803..7237)
                     /locus_tag="ROE18_000395"
     CDS             complement(6803..7237)
                     /locus_tag="ROE18_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDX3650614.1"
                     /translation="MIARWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPAQKTKHNIFLK"
     gene            complement(7246..7437)
                     /locus_tag="ROE18_000396"
     CDS             complement(7246..7437)
                     /locus_tag="ROE18_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HDX3650615.1"
                     /translation="MKKIFLIGMILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKK
                     YNKKTHRYQNKTQTEITIK"
     gene            complement(7490..7996)
                     /locus_tag="ROE18_000397"
     CDS             complement(7490..7996)
                     /locus_tag="ROE18_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HDX3650616.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            complement(8005..9036)
                     /locus_tag="ROE18_000398"
     CDS             complement(8005..9036)
                     /locus_tag="ROE18_000398"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HDX3650617.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGGSVSEKYAKFAVESGAIVIDNTSHF
                     RMEKDVPLVVPECNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFEPQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMINETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILEKAPSVI
                     VIDDPKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            complement(9036..10337)
                     /gene="flgR"
                     /locus_tag="ROE18_000399"
     CDS             complement(9036..10337)
                     /gene="flgR"
                     /locus_tag="ROE18_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HDX3650618.1"
                     /translation="MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDEN
                     TDLIITDINMPGIDGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDV
                     DTLVEAIKRAKIIREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDASV
                     MFFGESGVGKEVFSRYIHTHSKRSNKPFIAINMAAIPANLIESELFGFEKGAFTDANA
                     TKIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIISAT
                     NANLDEKIKNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLEDTCKEYDFKEK
                     QLSQEAKNALLEYDFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKNLE
                     KELICEVLLSVDYDKDQASQILGMDIKILNEKIKKYQIKDK"
     gene            complement(10394..10843)
                     /gene="flgQ"
                     /locus_tag="ROE18_000400"
     CDS             complement(10394..10843)
                     /gene="flgQ"
                     /locus_tag="ROE18_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HDX3650619.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDLKVLPRTSLGLIDDNMPKTIKFNFLNSHKDELSDCFI
                     GARISVKDIVNTGLLRAQSETYVKILPLRFTVEFGEQNAIIYYLKKK"
     gene            complement(10819..11334)
                     /gene="flgP"
                     /locus_tag="ROE18_000401"
     CDS             complement(10819..11334)
                     /gene="flgP"
                     /locus_tag="ROE18_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HDX3650620.1"
                     /translation="MKKIYFMLAIAGIFAGCVPSANSATKNSSANSTAPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDENFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            complement(11398..13989)
                     /gene="gyrA"
                     /locus_tag="ROE18_000402"
     CDS             complement(11398..13989)
                     /gene="gyrA"
                     /locus_tag="ROE18_000402"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HDX3650621.1"
                     /translation="MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKEKQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE
                     NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDLQ"
     gene            complement(14030..14605)
                     /locus_tag="ROE18_000403"
     CDS             complement(14030..14605)
                     /locus_tag="ROE18_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HDX3650622.1"
                     /translation="MRCINCGAFALLCFCELCELELSEFSLNVRKLDNNFKVYSFYKY
                     HEIQHLLHSKHYFYGYFVYKMLAKLSFAKFKDFFDPRMTINVIALDDKVEDMLYSHSA
                     ILARYLKTKFVKPVFNVLKAQNSVKYSGKSLEFRQKHKRNYKLLKTIHEPVILVDDIV
                     TTGSSLLEAKKVLEENKISVLFALVLADAKV"
     gene            complement(14602..15246)
                     /locus_tag="ROE18_000404"
     CDS             complement(14602..15246)
                     /locus_tag="ROE18_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650623.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPG
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            complement(15323..17119)
                     /gene="lepA"
                     /locus_tag="ROE18_000405"
     CDS             complement(15323..17119)
                     /gene="lepA"
                     /locus_tag="ROE18_000405"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HDX3650624.1"
                     /translation="MSVKNIRNFSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMD
                     TMDIEKERGITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLV
                     VDASQGVEAQTIANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAI
                     CVSAKTGVGIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSI
                     AKNDEVLVMSTDKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTI
                     TLVKNKAKEAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSL
                     ALGFGFRVGFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGELIKIQNPSEL
                     PPVNKIDHIKEPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPL
                     NEIVMDFYDKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQ
                     SKGRELVSAMKEIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRK
                     LLEKQKEGKKRMKAIGKVNLPQEAFLSVLKID"
     gene            17246..>18032
                     /gene="cmeD"
                     /locus_tag="ROE18_000406"
     CDS             17246..>18032
                     /gene="cmeD"
                     /locus_tag="ROE18_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HDX3650625.1"
                     /translation="MFKKYLKSAIFLALYPLAMLASNLHEFITLSQNNESYLIKKMQS
                     EQANLDKEQAFRNYLPSLSLSSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRALESREKLSFLDKEQNKNYLALNAITLYFNTLSLEKILLANQQKVSFLKSTFERL
                     QKFYDAGLSSKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSDTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNF"
BASE COUNT         6206 a         3454 c         2149 g         6223 t
ORIGIN      
        1 tttactttca tttttatagc ttaattctaa ttttaaagca ttagagccag ttaattctaa
       61 gtttttattc tcattgctta aggcaaaatc tttaaaatgc aataataaag aatttttcca
      121 attttgaggc tcgccaaaag tagaaatcaa catagttcta cccacttcta accaagcaga
      181 tttaaaccat aaccaaaaac tttcatcttg aggtctattg gaaccttcta aagcttcttg
      241 cgcatgcaaa gaagcagctt taactacaaa actaatatca ttaatttcat aaagtcttct
      301 ttccttagca tttgcctttt ctccaatttt aaggtctaaa ttttgtccat ctagcatgct
      361 tagaaaatgt aagttttcac ttgaacttaa agttaaattt tcatcaattt ttacaaaagg
      421 tgctttaaca ttatcattca taaaagcaaa gttaacccct tctatattct taacttcacc
      481 tttttcaaat ttaacatcaa caccttgaga tcctttttga gaaagcatca aaaccaataa
      541 aggatcagaa ttattatttt ctttataagt ataatgagca tttaagatta aatctttata
      601 ttttaataca gcttgatcat cacctaaatt aagttttagt ttaaaagaat tagcaaaagg
      661 caaatttcct atataacgat cattaaccgc actatagcgt tctccatctt ttatagcaga
      721 aatacgcaaa gaagtcttag aactttctat aagtgaattt tgagtatgct ctctaatagg
      781 taaaatacct tcaaaaccag catatcttgt cattgcagaa cccactaaaa taaataaaaa
      841 agaaatatga aaaatcatta aaggtaattt tttaagccca aacattttat aacgaaacat
      901 cccgcatagt aaattaatac caagtaaaag ttgtatatat tcaaaccaaa aagtatcata
      961 aaccattgcc caagccgtag gggttccata agcactttca ataaaagttg ccaaagcaca
     1021 aaaaagcgca aaaagcaaaa acaatacaac cgaaactctt aaatccccta tgctttttat
     1081 tatatttttc attctttttc ctttaaattt taaagcccta aatatttctt tctaatctca
     1141 tcatcaccta ttaaattttt agcctcgttt tccattacaa tgcgaccatt ttccaaaaca
     1201 taagcataat cacttatttt taatgcagaa taagcatttt gctctaccaa aagaatagtt
     1261 ataccctctt cttttaaacg cacaataata tcaaaaactt cacccacaat ctttggagca
     1321 agtcccaaag aaggctcatc caacatcaaa agttttggtt cactcattaa agcccttgaa
     1381 atcgcaagca tttgcgcttc ccctccactc aatgttccag ctaaagcatg ctttttactt
     1441 gcaagtcttg gaaaaagttt atacatttgc tctcttaaat gctcataatt ttcagcatta
     1501 ttaaaagcac ctatttttaa attttcctct acgcttaaat taataaaaac acgccttcct
     1561 tcaggaacta aagctatacc tttttgaact aaagtatgag ttaaatgcct tttagtatca
     1621 taacctaaga aattaacctc accagttctt ttaactgagt ttaaaagcgc atttaaagtt
     1681 gaagttttac ctgctccatt tgaacctata agagaaacaa tatgacctgt ttccacttta
     1741 aaatcaatcc ctttaacagc ttcaattaat ccataataaa catgcaaatc tttaactatt
     1801 agcatcaaaa tcccctaaat acgcagcaat tacttcttta tgatttacag catcgcaaag
     1861 tttaccttca aaaattgttt ttccataatc aagtaccaat acgcgatcac acaatttatt
     1921 tacaaatttc atatcatgtt ctataagcaa aacgctaatt ttataatctt ttcgtaattt
     1981 aaaaatgagc ccagcaagtt catcactctc agagctattc atcccagcgg ctggctcatc
     2041 aagcaataat aatcttggtt gagtagccat tgctcttgca atctcaactt ttctttgttg
     2101 tccataactc aagctagtag ccttttcata ggcaaattct gcaataccaa gttcttctaa
     2161 tattgcataa gccttctctt taaatacttg ttctattttt ccaaaacgcc ctaaatgcaa
     2221 aaaggcttca aaaatattat atttcatttg tttattaaaa ccaataagaa cattttcaag
     2281 cacattcatg cttgaaaaaa gcctaatatt ttgaaatgtt ctagctattc ctaaatgcac
     2341 aatcttatga ggttttaagt gatcaattct ttctcctaga aattcaaccg aacctgaact
     2401 aggtttatag ttacctgtta taatattaaa aagagttgtt ttgccagccc cattaggtcc
     2461 aattaaagca aaaatttcac cctcattgat tttaaaagaa gtttcattaa tagccttaac
     2521 actaccaaaa ctttttgaaa tttgttttaa ttccaaaatc attttttgct ccttttaaaa
     2581 cgctttttaa tccctctaat cacatcactc aactcataat aacccattat gccttttctt
     2641 gcaaaaagca ttactaaaat cagaacaata gaaaaaacaa ccattctaag ccctggcgtt
     2701 gattggatat caagatttaa agaatctatt tttatattta actcatctaa aaatctaagc
     2761 cactcacttc caccaataac caatatcgca cctataatag cacctgtagt agaaccaagt
     2821 ccacctaaaa caataataat caaaagctga aaagtaagta aaaaatcaaa ttgagttgga
     2881 gatacggtag tcaacagaca agctaaaagt ccgccaccta caccttctaa aaatgctgaa
     2941 gtgctaaaag ctaaagtttt tatccaaaaa gtatttattc ccatagcgct tgcagcatct
     3001 tcatcatctc ttatagcctt cattgcacga ccatatttag aataaactat atttaaaatt
     3061 aaaataaccg ctacaatagc aataccacct gtccaataga tcgtggaaaa ttgtggaata
     3121 tctaccagcc ctcttgagcc attagtaata gaaggaaaat taatagcagc tattttaata
     3181 attattccaa agcctaaagt tacaatagcc aaataatccc ctctcacgcg aaatacagca
     3241 aaagccaaaa tcagggcaag taaagatgaa caaattccag ccacaattaa agctagaata
     3301 aaggaatttg aatggatagc taaaataaaa gaactaggac catctaaaaa aaactgatca
     3361 ttttttgcat cagcacttaa aagaactaaa gcagccgcat aagctccaat cgcaacaaat
     3421 ccattgggtt ctagtgaaaa ttgtccagtt acaccattaa taagattgta actcacagcc
     3481 aaaataataa aaatagcaat ttgattaaca atgtttaatc cataatcccc aaaaatataa
     3541 ggagaaatga aaataaaaat aattgaagca attaaaaaga ttaaatgtga aaccttaatt
     3601 ctaaccatca ttaaaaccta ctcttttcaa aatttatacc taaaattccc gtaggcctaa
     3661 ataacaatat aaacaccaaa aaaataaaag caaatgcatc tttaaagcct gataaatctg
     3721 gaaaaaaagc cacaacaaca acttcagtaa atcctataat aagtccaccc aaaactgcac
     3781 ctactacaga acctatacct cctaaaactg cagcagcaaa agcttttaaa cctattaaag
     3841 ttcccatagt aggttcaaca gagtaataat ttgcagccca aaaaacaccc ccaactgctg
     3901 ccaaagctga acctagggca aaaactatag caataatacg atttgcatct atacccatta
     3961 aatttactgt ttgtatatca aatgccaaag cacgaatagc tataccatat ttgcttttat
     4021 acaaaatcca taacactgct attaaaataa caaatgtaag agcaggaacc attaaagaac
     4081 cataagttgt tatcactcca ccaaaattaa cactttcctc aaaataactt ggcggtgtaa
     4141 aagttctagg tgttgaagta aaaagcatat taaaaagatt ttgcaagaaa aaactaatac
     4201 cgattgctgt aatcaacaat gaaattctag gagcctgtct taaaggttta taagcgattc
     4261 tatctgtagc tattccaaca caagcagcaa aaatcattgc taaagacaaa gctcctagaa
     4321 aaggaacatt tagattagtc atgcaaaaaa gagccgcata agcaccaacc atcataatat
     4381 cgccgtgagc aaaattaata agtcttaaca caccataaac catcgtatag ccaacagcaa
     4441 taagagcata catactgccc aaactaagtc cattaacaag ttgttgtaaa aataaagtag
     4501 aatccataat ctttctattt ttcctttaag gattgataat atctttataa ttttgcttct
     4561 gatttttaat ttctttaacc actacagaac gagttgcatt tcctgtttga tcaatactga
     4621 taacaccaga aacaccttga taatttttag tttggtgaat tttttcattg acacacttac
     4681 tagtaagatt ttcaacgcaa gcattcatag catttagcat tacaaaatac gcatcagcac
     4741 ccatagccga aaaatttgga acttcttttg ttcctttagc tttttcataa acactgataa
     4801 attctttgct taattttgta gttggattat tagcatcaaa actatctgtg aaaatataac
     4861 cctcgcttgc atctccagct aaactaataa aagtttgatc agcaactcca tctgcagaac
     4921 ccataggaat atttaaacct gcgagttttg attgtcttgc aaataaagaa gcttcgctat
     4981 aataaagcgg taaaaaaata aattctggat ttaaactttt aacttgagct acaatagctc
     5041 taaaatcttt atcacctgaa ttaactctta aaattctaag aatttgacca ccattagact
     5101 tgtactgttt ttcaaaagct tttgctaaac ctaaggaata gtcagtgctt tgatctacta
     5161 caataacagc acttttgtaa ttaagttttg aaaaaacata ttttgctaaa gatgaacctt
     5221 gaaaactgtc cataaaacat actcgagaag aatatatttt tttatcaagc aatctatcac
     5281 cagttgcagc aggagcgatc aatggaattt tattatcttc tgctacgcgc ataacttgca
     5341 atgtattagc agtaaccatt tcccctataa ggcctataac tttatcttga gaaactaaac
     5401 gatttgctcc actcgaagat tctaatttat cacctttagt atcaataata gcaagagaaa
     5461 ccttatctcc attacttaaa gctgattgca ttgaatttgc aagtttaatc ccttctagtg
     5521 cgctttgtcc atatgctgca gtagctccgc taagcggtaa aacaactcct attttgactt
     5581 ccgcagcact taaacttaaa cttagaatac ttgctaaaat taaacttttt ttcattctct
     5641 acctttattt tagtaattat ggatttataa ttgttttata attttgtttt tgattttgaa
     5701 tttctttaat cacaacagaa cgaatggcat taccgctttc atctatgcta atcacaccac
     5761 caacagcttg aaaatcttta gtttgatgaa ttttgctatt aatacattcg ctgctaagat
     5821 tatcaacgca agcattcata gcatttaaca ttacaaaata cgcatcagcc cccatagccg
     5881 aaaatgctgg aagttctttt gttcctttaa ctttctcata agctgcaaca aaatcttttc
     5941 ctaattgtgt agatggattg ttataatcaa aactatcagt gaaaattact ccattaacag
     6001 cacttccgcc aagatctata aaagtttgat tgttaacacc atctcctgct gctaaaagtt
     6061 tatcaaaacc aatttgtctt gcttgtctcg caattaaagc agcttcagga tgataaatag
     6121 gcatataaac aaaatcagga tttaaactct taagttgaga aaccacagct ctaaaatctt
     6181 tatctcctga attaataaca agttttttta taattttccc accattattc ttaaaagaat
     6241 tttcaaaagc tcttgccaaa cctaaagaat aaacattgct ttgatctatg atgataacag
     6301 catttttaag tcctaaatcc ttagatacat aagtagcaaa tttatctcct tgaaaactat
     6361 ctttaaaaca aactctactt gcatatttct ttttatctag caatttatct ccagatgcca
     6421 ctggagctat taggggaatt tttttctctt ctgctataga aatagcttga atggtatttg
     6481 gagttgtagc ttcaccaata atcccaagga ctttatctgt tgctattaaa cgattaactc
     6541 catttgaagt ttcaagctta tctccttttg tatctattgt gataagttta ataacatctc
     6601 catttgaaag ttttggctgt agcttattag ccagttcaat tccgttaaaa acatcttgcc
     6661 cataagctgc cacagttcca gttaaaggta aaactactcc tatattaata tccttagcat
     6721 ataagcaatt taccatagtt aaaacactta aagttaaagt tagttttttc atagtattcc
     6781 ttttaattat agtttttaca ttttatttta gaaatatatt atgttttgtt ttttgcgcag
     6841 gttcttcttc aagaagatct tttacttgca aatcaagcgc aaaatttcca cctttaatat
     6901 aagcaataat attatctata tcctcgtggc ttaaatttct agcataaaaa gccatttgag
     6961 aagctgttgt agaactgcta ctatcaagag tataacctat caaagctcct ttaatatcct
     7021 caggagacat atcttttaaa attctagatc ctataacact cttttcagca ttatctccat
     7081 ggcaagtatt gcatttattt tgaaaataca aagccttcgc tttttccata tcatattgct
     7141 tatttgcatc aaaggtataa gtaaaaaatg atttcaagtt aataccaaaa agcgcaacaa
     7201 caaatattga actaataaac aaccagcgtg caatcatgat tttccttatt ttattgtaat
     7261 ttctgtttgt gttttatttt gatatctatg tgtttttttg ttgtattttt tttctttttt
     7321 aatatcatag cgataacgaa cagtccctga aacttctata tctttaaaga cttcatctaa
     7381 cggagctgca aaaacaaaat gatttaaaat cataccaatt aaaaatattt ttttcatttt
     7441 tattctttaa acacaaaaaa acgattatat caaaaaaaga taatccttgt taatgaccac
     7501 ctttatgtaa aaaataaagt cctacacaaa gagctaaaat cgatccagca agaaaagcca
     7561 tatccacagg agtagcaaat ttcatctgta aaaccctttg aaagaaattt accactaaga
     7621 ccataatgat aacttttgca agcttgtctt ttaattgatc taagctatgc acctctaaaa
     7681 ccttgctttg ttttgtttgt ttaaattctt ctatttcgct gataaaaagc tcataaactc
     7741 caaaagaaaa aataaacaaa actaaagcca taagataaag atcaacagct cctataatta
     7801 aagccaccac atcctcatgc aaatccacat tagaacctgc atcaaaaaaa taattataag
     7861 tataaaatat aacttttaaa acatcataac ttgcaataaa aaacaataca aaagctccaa
     7921 ttaaaccaaa aattacgggt aaaattgtaa caatacgact tctaacaagt aaagattcaa
     7981 atattttctc taacattttt ttccttattt attttttaat tctaaccatt tttgcgcaat
     8041 acgcacagca tttgttgcag cacctacacg aatttgatcc gccacacacc aaagatggag
     8101 tattttttta tcatacacat cagcacgaat tcttcctaca taagtttcat tagtatcgct
     8161 agtcattaag ggcatagggt attttttatt tttaggatca tctatgacaa taacacttgg
     8221 tgctttttct aaaatttctt tagctttttt tacatctatt tctttttcaa aatgcatagt
     8281 aatggcttcg ctatgacttc ttaaaacagg cactcttaca caagttgccg aaacttctaa
     8341 atttttatgt aaaatttttt gagtttcatt gatcatttta agttcttctt tagtgtaatc
     8401 attatccata aaaacatcaa tttgtggaat aagattaagt gccaaagtat aaggaaaagt
     8461 ttgaggttca aattcatcaa gtttaaaagc aaaaaaactt tgcatggctt caaccaattc
     8521 ttgcattcct tcttttcctg ctccacttgc agcctgatag gtacttacat caacacgctt
     8581 taaattaaat gcatcattta aaggttttaa aacttgcacc atttgtatag tagaacaatt
     8641 tggattagca ataatccctg tttttttcca atctttaata tcctcaggat tgcattcagg
     8701 aaccaccaaa ggaacatctt tttccattct aaaatgactt gtattatcaa ttacaatagc
     8761 acctgattct actgcaaatt tagcatattt ttcactcaca cttccacctg cgctaaaaaa
     8821 agcaatatca ataggatttt ctttaaatac attttcggta agttctttga ctttataagc
     8881 tttgccttta aattctactt cactacctac actttttgca cttgctaaag gtaaaatact
     8941 ttccactggg aaatcaagtt catctaaaac atttaaaagc tcttccccaa ccgcaccagt
     9001 agcacccaca atggctattt tttgtttttt tgacattact tatcctttat ttgatatttt
     9061 ttaatttttt catttaaaat ttttatatcc atacctaaaa tttgagaagc ttgatccttg
     9121 tcataatcta cacttaaaag aacttcacaa atcaattctt tttctaaatt ctttacatct
     9181 ttttttatac ttctagcttc taagaacaaa tcttcacttg aaatttcatc attttcactt
     9241 aaaatacaag ctctttgtac aacggatatt aattctctaa tattaccagg aaaatcatat
     9301 tcaagtaaag catttttagc ttcttgactg agctgttttt ccttaaaatc atattcttta
     9361 caagtatctt ctaaaacctt ttgagctata cctaaaattt cttctttacg ctctcttaaa
     9421 ggcgggatat taataggaac agtgtttaaa cgataatata aatctgaacg aaattcgcca
     9481 ttttttattt tttcatccaa atttgcatta gttgcactga taattcttac atctattttg
     9541 atgctttttg tacttccaag tcgcgtaatt tctttttctt gcaaagctct taaaagtttg
     9601 gcttgaattt cataaggcat ttcgccaatt tcatctaaaa ataaagtgcc ctcattagcc
     9661 atttcaaaaa gccctatttt agttgcatta gcatcagtaa aagcaccttt ttcaaaacca
     9721 aaaagctcac tttcaatcaa atttgcagga atggctgcca tattaatagc aataaaaggc
     9781 ttattagagc gtttagaatg ggtgtgaata taacgagaaa atacctcttt tcctactcca
     9841 ctttctccaa aaaacattac agaggcatca gttttagccg ctttttgact taaatttaat
     9901 gttttttcta aattaggaga agttgaaaaa aaatctttat tttcttcttt tttttcattt
     9961 tttttgcttt ttttatcggc tgttttttct cttatgattt tagcacgctt aatagcctcg
    10021 actaaagtat caacatcaaa aggcttggtt aaaaaatctt ttactcccaa acgaaccgct
    10081 tctatagcac ggcttaaagt agcatttcct gtcataataa taaaatcata tttattttca
    10141 caggctttaa caaattctat gccatcaatt cctggcatat taatatctgt aataatcaaa
    10201 tctgtattct catctatttt ttttaaagct tcagtggcag atttataaga tttaatatta
    10261 aattcttcat actctgctaa tgcaatttct aaggatttgc gcatattaat atcatcttct
    10321 actatgacta aattcatcct aagcctttta aaaaatttct actatagtat ccaatttgcg
    10381 cttaattttg aatttacttt tttttaagat aataaattat cgcattttgt tcgccaaatt
    10441 ctacggtaaa acgcaagggt aaaattttaa cataagtttc actttgagca cgtaataagc
    10501 cagtattaac aatatcctta acactgattc tagctcctat aaagcaatcg cttaattcat
    10561 ctttatgaga atttaaaaaa ttaaatttaa ttgtttttgg catattatca tcaattaatc
    10621 ctaaagaagt tcgaggtaaa acttttaaat cttgatcact ataagaaatt tcacataccc
    10681 attgttcttc aacattttcg ctttgcgtca ttgctaagga taaattttga ttttgatgaa
    10741 agagaatgaa atttttacta gaaagctctg cccaaaaaat aaattcatct tgggcaaaaa
    10801 gcttaaagct aagaaagatt aataagcaaa caattctttc cacttgtctg catcgatttt
    10861 aagttctaag tttactctat aaagcccttg attaaaattc tcatcaataa tacttgcatt
    10921 ttttatcaaa ccatttactt gcgcagtaat agttgaactt ctaagcattg catcttttac
    10981 agtgtcttta ccattcactt tcacaccata aagcttactt gcaagctgtc tgtaagcatc
    11041 tgtaatcgct gctctttttg ctaaagctag ggcttgagca gtagaaactg tattcatcgg
    11101 agcaatccct tcaccaactg ctgtaaaact aagttccgtt tcgctagcat ctggagccaa
    11161 cattttttct tctctgataa tatcacgcac atcatcttta tcgacttttt gcacgataac
    11221 atcttgagat ggagcagtgc tatttgcact tgaattttta gttgcactgt ttgcacttgg
    11281 tacacaacca gcgaaaattc ctgctattgc tagcataaaa taaatttttt tcatttttac
    11341 accttcaaaa tattgtaatt agtaaaataa aaagcaataa gcgttccaac tttaaactta
    11401 ttgcaaatct aaaccaaagt tttcatcgct taactcatcc tcgtcatttt cctctttagg
    11461 acacttagcg atgctaacca cctcgtcatt ttccacatta actacaatga caccactcgt
    11521 attacgccct gcttttctaa tgctttgcat atcaacacgt atcatcttac ctgaacttgt
    11581 aagagccatt aaatccatag tttcatctac tataactacg ctaataagat ctttggtttt
    11641 ttctgtaagt ttcatacaaa ttacaccttt gccacctctg ctttgcaatc tatattctcc
    11701 agcatttgtg cgttttccta taccttttgc acttatgctt aaaatttctt gctcatcatt
    11761 ttctataaca actgcaccta ctaattcgtc atttttctct ttaaacttaa tagccgtcac
    11821 cccacgactt acacggccga tttcacgtac tttagcaagt gggaatttga tacacatacc
    11881 ttttttggtt actgcaaaga gcattttacc ttgtgtgctt acactctctt cattttcaag
    11941 attttcatca tctaaatttt caatttcttg attttctaaa ttttcttcac caccagtggc
    12001 aaaaatttca tcttcatctc tttgaacaat aatagcagtt accaactcat cattttcatc
    12061 caagttgatc gctctaactc ctacacttct gatattttga tattcactca aatttgtacg
    12121 ctttacaata ccatttttag taaagaaaca taaagattta ctctcatcaa aatccgtggt
    12181 tggaataata gccatgattt tttcttcagc ttgtaaattg ataagattta ccactgcttt
    12241 tcctttagcc gttcttgagc cttcaggaat tttataaact ttaagccaat aaagctgtcc
    12301 acgatctgtt acaaacataa gcgtatcatg tgtatttgcc gtaaagaaac tttctataaa
    12361 atcatcatca taagtcgtaa cggctaattt tccttttcca cctcgttttt gtttttcata
    12421 ttgtttacta ggcacacgct taatataacc acgatgtgtg atagttacaa ccatattttc
    12481 attaggaatc aaatcttcaa tatcaatatc atcgtaatca tcttcaattt gagtaatacg
    12541 tggcacatca aatttacttc taatttcttt taattcatcg cgaattaaat tttcaagcaa
    12601 ggtttcactt tttaaaattt cttcaagtct tgcaatttct ttcattaatt ctgcaagttc
    12661 attttcgatt ttttctcttt caagtcctgt taaacgacct agtttcatat ctaaaatagc
    12721 attggcttga agctcgctaa gaccaaattt agctaccaaa gaatctcttg cggtattatt
    12781 atcagaacta tttttaatta aagcaatcac ttcatctata ttatcaagtg caattttaag
    12841 accttctaaa atatgagctc ttgctcttgc cttttgaagt tcaaaaatcg ttcttctaat
    12901 aataactgtt tttctatggg ttaagaaaag atttaaaagt tctaacaaag agaaaatttt
    12961 aggttcttta ttgtgaattg ccaacataat cacaccaaaa gtactttcca tagtggtaga
    13021 tttaaataga ttatttaaaa caatttcact catagcctca cgtttaagct ctataacaac
    13081 gcggattcct tctttattac tctcatctct tacttcagat attccttcaa tttgcttttc
    13141 tttaacaagc tctgcaatct gctctataag cctagcttta ttggtttgat aaggaagctc
    13201 atctataaca ataacatctt tatttgtctt tttttcaata tgagttttag ctcgcacttt
    13261 cacacgacca cgccctgtgc gataagcttc tataatgcct tttttaccat aaattattcc
    13321 acctgttgga aaatctggac ctttgataaa ctgcataatc tcttctaggc ttgcatcttt
    13381 attatcaagc aaatataaaa gtccatctat caactcattt aaactatgag gtgggatgtt
    13441 tgtcgccata cctacagcta taccacttga accatttaat aataaatttg gaaccctaga
    13501 aggtaaaaca tcaggttcgc tttctgaacc atcataattt ggaacaaaat cgaccgtatc
    13561 tttatctata tcttttaaaa gctcatgaga aagtttactc atttttgctt cagtataacg
    13621 catcgcagcg gcactatcac catctataga tccaaagttg ccttgtcctg taatacttgg
    13681 atatctcata gaaaaatctt gagccattct aaccaaagca tcataaactg ctgtatctcc
    13741 atgtgggtga taacgaccta taacagcacc cactatacgg gctgatttga caaaatctgt
    13801 tctacttttt gcctcatcat tttgcatagc atataaaatt cttctatgaa caggctttaa
    13861 accatctctt gcgtcaggca aagcacgacc tataataaca ctcatagaat agtctaaata
    13921 actacttttt atagaatttt ctatatctac aagttcaata tcagaatctt tgctaaaaat
    13981 attctccata aaaatccttc tattagttca aagttttgat tatagcatat taaacttttg
    14041 catcagctaa aacaagagca aaaagtacag aaattttatt ttcttctaaa acttttttag
    14101 cttccaaaag gctagaacca gttgttacaa tatcatctac taaaattaca ggttcgtgaa
    14161 tggtttttaa gagtttgtaa tttcttttat gtttttgacg aaattctaaa ctttttccag
    14221 aatatttcac agaattttgt gcttttaaaa cattaaaaac aggttttaca aattttgttt
    14281 taagatatct agctaaaata gcagaatgtg aataaagcat atcttcaacc ttatcatcta
    14341 aagctataac attaattgtc attctaggat caaaaaaatc tttaaatttt gcaaaactta
    14401 atttagcaag cattttataa acaaaataac cataaaaata atgtttagag tgaagcaagt
    14461 gttgtatttc atggtattta taaaaagaat agactttgaa attattatca agctttctta
    14521 catttaagga aaattcagaa agctctagct cgcataattc acaaaagcag agcagagcaa
    14581 aagctccgca atttatacac ctcaaagttc agagattaaa ctagctgctt tatttgccat
    14641 ttgttttatt aacaaatgag tataaaaagt tgtttctttt aaatcatcaa aaccttgtac
    14701 atcttgcttg gtgcggattg taaatttctt atttttattt atatcactaa cttgtaaaac
    14761 tcctactagt tttgaatgta atcctatagc atcttgagtt gctccataag atataaattc
    14821 taaatcaatc ttactcacat aaggtgaatt ttgatcgtta ttgtcaagca caactattcc
    14881 tctagcttca agttcttgtt ttaaataagt ataaaatacc gcattaaaat tcacatcgac
    14941 aaataacttt ttccctttag catttaaaac cttttgccct tcttttaaat cataaaatct
    15001 atgtaaataa acctttttca aagcaatacc agtgtctaaa gtgcgtttat tggcacaaca
    15061 ttgaattcca acatcgctaa tgtataaaag ccctttaatc tttgcttcaa aaccaccagg
    15121 actttcacaa gaactgcatt gagaattttt agaaatttga ttaacttgag caaaagtatc
    15181 ttgtttagtt gcacaagcac tcaaaaataa aataggcact ataaaaatca aaaatttttt
    15241 aaacattttt tctccttaga aaattatttt aaaattgtat taaaaataca agcaaatttc
    15301 aagccaagtt ttaaatttat catcaatcta tctttaaaac actcaaaaaa gcctcttgag
    15361 gtaaatttac cttacctata gctttcattc tttttttacc ttctttttgc ttttctaaaa
    15421 gctttctttt tctagtaata tccccaccat aacattttgc tgtcacattt ttacccatgg
    15481 atttaacagt ttctcttgcg atgattttat ttccaatact tgcttgaatg gccacttcaa
    15541 aaagctgtct aggaactatt tctttcatag cactaacaag ttctcttcct ttactttgcg
    15601 ctttttcatt aggcacgata atgcttaacg catcaacatt ttcacccgct accttaatat
    15661 caagttttac caaatcccct actctaaatt ctataggctc ataatcaaaa ctcgcataac
    15721 cttttgttaa ggactttaat ttatcataaa aatccatcac aatctcattt aaaggcacat
    15781 catattctag caaaacacgc tcaggtgtga tatagtccat tttaacctgt actcctcttt
    15841 tgcgatttaa aagagtgatt aaattcccta aaaattcact tggagtaatg atagtagctt
    15901 taacataagg ctcttttata tgatcgattt tattaacagg aggaagctcg ctaggatttt
    15961 gaattttaat aagctctcca tcggtttgat aaatttcata agtcacagtt ggagctgtag
    16021 caatcaaatc aagattaaat tctctctcaa gcctttcttt gataacttcc atatgtaaaa
    16081 gccctaaaaa tcctacccta aaaccaaagc ctaaggccaa agaagtttca ggctcataag
    16141 taatagaact atcattaagc tttaatttat ccaaagcatc tcttaaatct tcaaatttat
    16201 ccgtttctat aggataaagt cccgcaaaca caaaagcttt agccttttca aaaccaccta
    16261 tggcttcttt agctttgttt tttaccaaag tgatggtatc gcctacttgt acatcaccta
    16321 cggttttaag ccctaaaacc accacaccta cttcgcctga ttgtaaagat tgagttttaa
    16381 ttggacttaa agggtgggga taaaaaagat cttgaactat atgtttttta tccgtactca
    16441 tgactaaaac ttcatcgttt ttagcaatac ttccttcata aatcctaacc aaagccaaag
    16501 cacccaaata attatcaaac caagaatcat aaattaaagc cttagtagga gcttcatcat
    16561 ctgtttttgg tgcagggatt ttagtaataa ttgtttctat aagctctttt atacccactc
    16621 ctgtttttgc actcacgcaa attgcatctt tgcaatctat acctataata tgctcgattt
    16681 catgctttac tttctcaaca tcagcattag gtaaatcgat tttattaatc acaggaatga
    16741 tttcaagatt attttcaagc gctatataaa cattagctat agtctgtgct tcaacacctt
    16801 gagaagcatc tactacaagc aaagcccctt cacaacttgc caaagaacga ctcacttcat
    16861 aagaaaaatc cacatggcca ggagtatcaa taagatttaa aacaaaattt tcattattaa
    16921 atttataatt taaacgcact gattgtgctt ttatggtgat accacgctct ttttctatat
    16981 ccatagtatc cataacttgt gaactcatct gcctatcgct aatagcacca cactcgctaa
    17041 taatcctatc tgcaagagta gattttccat gatctatatg agctataata gaaaaatttc
    17101 taatattttt taccgacaaa atttcatcct aaatataaaa ttttaaagct aggattttaa
    17161 caaaatttat gtttaaaaca aataaatttt attttatata aaaaacttca attgaaattt
    17221 atataaagta tattaaaata tcaaaatgtt taaaaaatat ttaaaatcag ctatattttt
    17281 agctctttat cccttagcaa tgttagcttc taatttgcac gaatttataa cactaagtca
    17341 aaataatgaa tcctatctca ttaagaaaat gcaaagcgaa caagcaaatt tagacaaaga
    17401 acaagctttt agaaattacc taccctctct tagtctaagc tcagcttatg tagccaacaa
    17461 taaagatcgc ttcattatcg atccacaaga aagtttattt gctaaagttt ctcttaattt
    17521 tttgcttttt gatgggggtg ctagagaggc taatttaaga gctttagaaa gcagagaaaa
    17581 attaagcttt ttagacaaag aacaaaataa aaattacctt gccctaaatg caatcacact
    17641 ttattttaac accttaagtc ttgaaaaaat tttactagcc aatcaacaaa aagtatcttt
    17701 tttaaaatca acttttgaaa gattgcaaaa attttacgac gcgggactta gctctaaaga
    17761 tgaacttgaa agcattaagg ctaaatacca tttaagctta ttagagctca gtcaaaatga
    17821 attaaaactt gccaatatac aaaaagagat taaaatttta agcgatacag attttaaagt
    17881 gcaagggaat gcttttttag aaaatccgca acaagaaaaa agtcaaaact atgaagtaat
    17941 gatagctaaa gaacaaatca atcttgctaa agaaagtgta aatttagcaa aagctgaata
    18001 ttttccaaaa ttttatattc aagataattt ta
//
LOCUS       DAPOLW010000016        17712 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.016, whole genome shotgun sequence.
ACCESSION   DAPOLW010000016 DAPOLW010000000
VERSION     DAPOLW010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17712)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17712)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17712
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.016"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(48..1919)
                     /gene="dnaK"
                     /locus_tag="ROE18_000407"
     CDS             complement(48..1919)
                     /gene="dnaK"
                     /locus_tag="ROE18_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HDX3650626.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVTDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLANEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVAAADKENIQKALDDL
                     RETLKNQNASKEEIESKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
     gene            complement(1941..2471)
                     /gene="grpE"
                     /locus_tag="ROE18_000408"
     CDS             complement(1941..2471)
                     /gene="grpE"
                     /locus_tag="ROE18_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HDX3650627.1"
                     /translation="MSEQKQEFENENAENSEHLQDENLQNIEDVEQNKLQKDYDELKD
                     KYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECQDEISLKI
                     KEGVQNTLDLFLKKLEKHGVALIKDEKEFDPNLHEAMFHVDSENHQSGEVVQVLQKGY
                     KIADRVIRPTKVSVAK"
     gene            complement(2468..3259)
                     /locus_tag="ROE18_000409"
     CDS             complement(2468..3259)
                     /locus_tag="ROE18_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HDX3650628.1"
                     /translation="MKSRDKKDLILESIIQTYLLDNAPIGSNELNSNLCIPASTIRVY
                     LKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWEKEQDKNIHIKNESFLKELSKEFE
                     IYCLVYGGRSLVLKEVLDLNTKFIVLDFEDEELVLKYEKEAWNFLQSLIGLDLSSIEK
                     IALRVHFIDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCQIHRHFKESLEF
                     EPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            complement(3562..5652)
                     /gene="cfrA"
                     /locus_tag="ROE18_000410"
     CDS             complement(3562..5652)
                     /gene="cfrA"
                     /locus_tag="ROE18_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent ferric enterobactin receptor
                     CfrA"
                     /protein_id="HDX3650629.1"
                     /translation="MKKICLSVCAIGLLSSNAISQNVELDSSIVSASGFTQDIKEAPA
                     TINVISKKELQSKPYRDVAEAIADIPGVDLYASKGKTGSYNITMRGITGYTLVLIDGR
                     RQGIGGEVGPNGFNEISNSFLPPISSIERIEVIKGPMSTLYGSEALGGVVNIITKKVS
                     DKWETSVSLDALLNENKDWGNTYGTSIYSSGPLMNDKLGLTLRFREFYRQQSNVEFTN
                     GSGQRVQGDQAQSPTKANNFNIGTRISYLANDYNTFIFDIDFSRNHYDNKQGQLGTIT
                     SPGSAPDSLTGGYADIMEVDKFVTYLSHEGVYENFSITSGLQYNRVSNNGREVVGQAN
                     QPFLGQNRDIVAEDIILDTKSVIPLGQSHILSAGGEYRLEKMQDKIANPTNFDQYLLA
                     IFAEDEYSIKDNLRLTFGARYNHHEIFGNNISPRAYLVYNPTDELTLKGGVSTGFRTP
                     YANRLINGAYNYSGQGRFPIYGNPDLKEETSLNYEIAAIYNNDLFYVSATGFLTNFKD
                     KISTQRYDKGNMIPGIGTCDADRCFKAINHGKVEYKGIELGAGISPLDNLNVNFAYTY
                     LDSEVKEAQDKSVIGKPEQDSLKHNIMLKTEYSFYNKITPWIKGEWQIDRYMGDTNIN
                     REYYKDIFFASMGVRYDINKQWSINAAIYNLFNKSFTDGWESYQNSGAPTWVNTYNRI
                     EEGRRMYISINGSF"
     gene            5978..6676
                     /locus_tag="ROE18_000411"
     CDS             5978..6676
                     /locus_tag="ROE18_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDX3650630.1"
                     /translation="MKTFISNHKNQSSFITLFVFTPLFFVFLYSKDFLHIQPNEIIKE
                     NKFNMAIKHFVQNSSDMKPTQPTQTIQEPSNVQPKEPVQEIKKIKPRKEKPIAKPKKI
                     IPPANAKAISQPKKDTNMQQPIMQQQTPQASSYQSVSLTSNSELLKEIKSAIDEALIY
                     PRQARKMRMSGEVLVEFTWTKEKKLENLKILKPSKYDFLNKSALETIRIASKKFPQYE
                     KTFHIKIPLVYKLS"
     gene            complement(6768..7205)
                     /locus_tag="ROE18_000412"
     CDS             complement(6768..7205)
                     /locus_tag="ROE18_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDX3650631.1"
                     /translation="MKKDSYHKITSKLIQEFDLLAVEDLQIKNMCKRAKLKNIKAKSG
                     LNKSILNTSFYQFSQYLEYKAKHNGKFFIKVNPQYTSKTCSVCGNIKKNLMFKDRVYL
                     CEKCGNTLHRDINAANNILKRGLKSFGLGISLEDYKLKAFRIS"
     gene            complement(7326..7589)
                     /locus_tag="ROE18_000413"
     CDS             complement(7326..7589)
                     /locus_tag="ROE18_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDX3650632.1"
                     /translation="MNTFFKMRYHRDLRNTYKFNQITIIKNHNKYYLAFSIIYDESNV
                     SLISSKDFDIKKAVDIDLNINEITLSSGELIATNSKLLSRAEY"
     gene            complement(8018..8110)
                     /locus_tag="ROE18_000414"
     CDS             complement(8018..8110)
                     /locus_tag="ROE18_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650633.1"
                     /translation="MLETLKKYAENQGIEDNYPKKIYNQKEKKP"
     gene            complement(9102..9218)
                     /gene="rrf"
                     /locus_tag="ROE18_000415"
     rRNA            complement(9102..9218)
                     /gene="rrf"
                     /locus_tag="ROE18_000415"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(9474..12380)
                     /locus_tag="ROE18_000416"
     rRNA            complement(9474..12380)
                     /locus_tag="ROE18_000416"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(12910..12986)
                     /locus_tag="ROE18_000417"
     tRNA            complement(12910..12986)
                     /locus_tag="ROE18_000417"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(12950..12952),aa:Ile,seq:gat)
     gene            complement(12995..13070)
                     /locus_tag="ROE18_000418"
     tRNA            complement(12995..13070)
                     /locus_tag="ROE18_000418"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13035..13037),aa:Ala,seq:tgc)
     gene            complement(13173..14685)
                     /locus_tag="ROE18_000419"
     rRNA            complement(13173..14685)
                     /locus_tag="ROE18_000419"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            complement(15150..15887)
                     /locus_tag="ROE18_000420"
     CDS             complement(15150..15887)
                     /locus_tag="ROE18_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDX3650634.1"
                     /translation="MIKAFSLLEFVFIILILGIVFNLGSLYLKKDNLLEGAIQILNDI
                     QYTQSLAMMQEGIRVDELTIAKREWFKSKWQIYFIKSAATGYDQTYTIFLDKNGDGNA
                     NLGKTEINIDREIAVDVINHNKLMNSGQSGVISKDDEKTTQRFNLTKRFGIEKVEFKG
                     SCSGFTRLVFDEMGRVYSPLKNANYAYEKTLAKNNSDCIIRLLSKKHALCIVIDTLSG
                     YVYIPDFKTLKSQFVNIKNKNYECSKI"
     gene            complement(15880..17106)
                     /locus_tag="ROE18_000421"
     CDS             complement(15880..17106)
                     /locus_tag="ROE18_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650635.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGTSTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     SLLLFVLLPGTVASALLVNAASLVIFLTLAILCAYEYEKKWLFYILLIIVLFVDKSFN
                     ILFLTFFFFGIYKRNAILFTLSLVLFGASISFYGFDTGGRPRGYFLDTLGIFAACFSP
                     LVFVYFFYTIYRLTFQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVICTPLL
                     IKTLMQSYRVRLPVFRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNPNRHFANNY
                     HFAKELALELKKQDVLELATAPSLQKRLRFYGIKNSNKFYLKALKQADKHDMDKKIVK
                     VKLGKYEKVYQILNYD"
     gene            17234..>17712
                     /locus_tag="ROE18_000422"
     CDS             17234..>17712
                     /locus_tag="ROE18_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HDX3650636.1"
                     /translation="MQTIDQIFQTQIDIKKSTFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIVEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLVRAYSDAANAVINNSSLLSFELKKNTTIAIDLKNLNRFEHFLKTYSFNFTKD"
BASE COUNT         5672 a         3521 c         2502 g         6017 t
ORIGIN      
        1 aaaaaatttt caagcctttt aaaaaggctt gaatagagat tttaagatta ctcaacttca
       61 gcgtcgatta catcgtcatc ttttttcttt ttatcatttg ctgtgtttgg ctcatctttt
      121 ttatacatat tttcggctaa cttatgagaa acttcgctta aagctttcat tttgctttca
      181 atctcttctt tgcttgcatt ttgatttttc aaagtctcac gcaaatcatc aagagctttt
      241 tgaatatttt ctttatcagc agcggcaact ttttcaccca actcacttaa agatttttct
      301 acttgatgcg ccaagctatc agctgcattt ctagcatcta cagcttcttt gcgttttttg
      361 tcttcttctt tgtgaagttc agcatctttt accatgttat taatctcttc ctcgctaagt
      421 ccgcttgaac ctgtgatttt gatctcttga gccttacctg ttgctttatc ttttgcacta
      481 acagttaaaa taccatttgc atcgatatca aaagtaactt cgatttgtgg cataccgcgt
      541 ggtgctggtg gaattccttc aagattaaaa tttcctaaag atttattatc acgactaaat
      601 tctctttccc cttgtaaaac attgatagtt acagcacttt gattatcttc agcggttgag
      661 aaaacttgct cttttttagt tggaatagtt gtaccttttt cgataatctt agtcattacc
      721 ccgcctagag tttctatacc caaagagagc ggagtaacat caagtaaaag cacatctttt
      781 acatcacctt ttataaccgc accttgaatc gccgcaccga tagccacaac ttcatcagga
      841 tttacagact tattaagatc tttattaaag gcttttttca cttcttcttg cactaaagga
      901 acacgagtag agccccctac cataacgatt tctttgatct catctttttt aagccctgca
      961 tcgcttacta cttcattgat tttagtgatg gtttcagcta ctaaagaatc aatcatacct
     1021 tcaaatttag ctctagtaag ttttttaacc aaatgttttg gcccacttgc atctgctgtg
     1081 ataaatggta aattaatttc agtttcatta gctgaactta attctttttt agcattttct
     1141 gctgcttctt tcaagcgttg caaagccata acatcatttt taagatctat gcctgtttca
     1201 tctttaaatt cattagctag aaaatctata agtttattat caaaatcatc accacctaag
     1261 aaagcgttac cacctgttgc taaaacttct actacattat cgcccgtttc aagcacagta
     1321 acgtcaaaag ttcccccacc tagatcataa accacaattt tttcactatc ttttttatca
     1381 agtccgtaag ctagagctgc tgaagtaggc tcattgataa ttcttaatac attaagtcct
     1441 gctatcgttc ccgcttcttt tgtcgctttt ctttgtgcat cgttaaaata agcaggcaca
     1501 gtaatcaccg catcagtaac actttcaccc aaaaaagctt ctgcatcttc ttttaatttc
     1561 atcaaaactt ttgctgaaat ttcttgtggg gtgtaaattt tacctgcgat ttctattgcg
     1621 cacgcaccat ttctttcggt gatgtggtaa ggaagtctat ttttagcttc tttagccgca
     1681 tcttcattga tcattaaacc cataattctt ttgatagaat aaatggtttt ttcagggtta
     1741 gttaccgctt ggcgttttgc actatcgcct actaaaacct cgcctttatc tgtaaaagct
     1801 accactgaag gagttgtgtt ttttccttct ttgtttggga ttactttgct ctcgccgcgt
     1861 tcatacacag caacacaaga attggttgtt cctaaatcta tacctataac tttactcatt
     1921 ttttatcctt ttattaaaat ttattttgct acactaactt tggttgggcg gatcacgcga
     1981 tcggctattt tataaccttt ttgaagcact tgaaccactt caccactttg atggttttca
     2041 ctatctacat gaaacattgc ttcgtgtaaa ttaggatcaa actctttttc atctttgata
     2101 agagccactc catgtttttc aagtttctta agaaataaat ctaaagtatt ttgcactcct
     2161 tctttgattt ttaagctaat ttcatcttgg cattcaacat taacagctgc ttctaaagca
     2221 tctaaaacat caagcaaatc ctttgcaaag ctttcatttg cataagccat agcacttagc
     2281 ttttcttttt ccattctttt tttaatattt tcaaattcag cgtttgcacg catatatttg
     2341 tcttttaatt catcatagtc tttttgcaat ttgttttgct caacatcttc gatattttgc
     2401 aaattctcat cttgcaaatg ttcagaattt tctgcgtttt cgttttcaaa ttcttgcttt
     2461 tgctcgctca cgccgcctcc tttatatatt gtaatatttt tttataatcc gtataaacac
     2521 tacctgctaa gataatattt acatcttcgc ccaaaaactg cgcatccacc ttaagcccca
     2581 taaaaccttc tttaaataaa ggttcaaatt caagactttc tttaaaatga cggtgaattt
     2641 gacaatctaa gagcttaaca aattcatcat tttgataaat ttgataagct ctttcttcat
     2701 tgcttctata gcaaatcaaa ttttgtctta agctagctat tttttctaca agatctataa
     2761 aatgaactct caaagctatt ttttctatac tagaaagatc aagccctata agactttgta
     2821 aaaaattcca cgcttctttt tcgtatttta aaaccagctc ttcatcttca aaatcaagca
     2881 ctataaattt agtattaaga tctagtactt ctttaagtac taaacttcta cctccataaa
     2941 caagacaata aatttcaaat tctttactta actctttcaa aaagctttcg tttttgatat
     3001 ggatattttt atcttgttct ttttcccaaa aactttgcca ataattttgc atcgttaaaa
     3061 tagtaggaat tctaccacta cttatatgaa gctgagtgat caaaccctca tcgctaagtc
     3121 ttttaagata aacgcgtata gtcgaagcag gtatgcaaag gtttgaattt aactcattag
     3181 aaccaatagg cgcattatcc aaaagataag tttggataat agactctaaa atcaaatcct
     3241 ttttatctcg gcttttcata gctctttcct taaattttta gcactctatt ttttgattgc
     3301 tagatatatt atacaacatt gagtgttatt ttgtcaagtg taaatataaa aaatatactt
     3361 aattttattt agtctatatg actaaagttt tattagttac ttttttataa ggataagcta
     3421 tcttttaaga ttgaaaatgc aacgataaaa ataagatgaa aattttaaat tgaattgatt
     3481 gtctagtttt ttaaaggtat agggtattaa aataaaaaac taaagaagac tttaaaagcc
     3541 ctttagtttt tctattaaag cttaaaagct accattgata gaaatataca ttcttcttcc
     3601 ttcttctata cgattgtaag tattgaccca agtaggagca ccgctatttt gataagattc
     3661 ccaaccatct gtaaaacttt tgttaaaaag attataaata gctgcattga tactccattg
     3721 cttattgata tcataacgca cacccataga agcgaaaaag atatccttat aatattccct
     3781 atttatatta gtatcaccca tatagcgatc tatttgccat tcgcctttta tccaaggggt
     3841 aattttatta tagaagctgt attcagtttt taacatgata ttgtgtttta aactatcctg
     3901 ctcaggttta cctatcacac ttttatcttg tgcttcttta acctcactat caagataagt
     3961 ataagcaaaa tttacattta aattatcaag agggcttatc cctgctccaa gctctatacc
     4021 tttatattca accttgccat ggttgattgc cttaaaacat ctatcagcat cgcaagtacc
     4081 aattcctgga atcatattgc ctttatcata tctttgggtt gaaattttat ctttaaaatt
     4141 tgttaaaaaa cctgtcgcag aaacataaaa caaatcatta ttgtaaatag ctgctatttc
     4201 ataatttaaa gatgtctctt cttttaaatc aggatttcca tatataggga atctaccttg
     4261 accactataa ttataagctc catttatcaa acgatttgca taaggagtcc taaaacccgt
     4321 agatacaccg ccttttaaag taagttcatc agtaggatta taaaccagat aagctcttgg
     4381 cgaaatatta tttccaaaaa tttcatgatg attgtatctt gctccaaaag tcaatcttaa
     4441 gttatctttt atgctgtact catcctctgc aaatattgcc aataaatact gatcaaaatt
     4501 ggtcggatta gctattttat cttgcatttt ttcaagccta tattcaccac ctgcgcttaa
     4561 aatatgactt tgtcccaaag gaatgacaga cttagtatct aagataatat cttctgcgac
     4621 tatatctcta ttttgtccta aaaatggctg attagcttgt cctacaactt cgcgtccatt
     4681 attgcttact ctattatact gcaaaccaga agtgatagaa aagttttcat aaacaccctc
     4741 atggcttaaa taagtcacaa atttatcaac ttccataata tctgcataac cacccgttaa
     4801 gctatctggc gcactacctg ggcttgtgat ggttcctaat tgaccctgtt tgttatcgta
     4861 atgatttctt gaaaaatcta tatcaaatat aaaggtatta taatcattag ctaaataact
     4921 aattcttgtt cctatattaa aattatttgc ttttgtggga ctttgagctt gatctccttg
     4981 aactctttgt ccacttccat ttgtaaattc aacattagat tgctgtctgt aaaattctct
     5041 aaatcgaagt gttagaccca atttgtcatt catcaaagga ccactagaat aaatactcgt
     5101 tccataagta ttaccccaat ctttattttc atttaaaaga gcatccaaac ttacagaagt
     5161 ttcccattta tcacttactt ttttggtaat gatatttacc accccgccta aagcttcaga
     5221 gccatataaa gtactcatag ggccttttat aacttctatc ctttctatac tagaaatcgg
     5281 aggtaagaaa gaatttgaaa tttcattaaa accattaggg cccacctctc cgccaatacc
     5341 ctgacgacgc ccatcaatca aaaccaaagt atatccagta atacccctca tagtgatatt
     5401 ataagaacct gtttttccct tgctagcata taaatcaacg cctgggatat ctgcgatagc
     5461 ctctgcaaca tctctataag gcttactttg taattctttt ttactgataa cattgatagt
     5521 agcaggagct tctttaatat cttgggtaaa gccagaagca ctaacgattg agctatctag
     5581 ttctacattt tgcgatatgg cattggagct taagagacca atggcgcaaa ctgatagaca
     5641 tatttttttc atttttctcc ttttgtcaaa tattgattta gaaatcaaaa tattatgata
     5701 ataattatta atttaatata aattttgtat caattgtgat aattagtatt aattaaaaat
     5761 ttattttttc ttgctataat tcttaaaaat ataagttttt ttagagaagt aaatagcaaa
     5821 aattaaatat cttttagata caagcttgat tatttgattg ttatttttct ctgtgaaatt
     5881 tgtttcaaaa tttatctttt taaacaattt accatagaat gtgttttaag aaataaagat
     5941 atttaaatca aaaaataaaa tcataacgga gtaaaagatg aaaacattta taagcaatca
     6001 taaaaaccaa tcttctttta tcactttatt tgtttttaca cctttatttt ttgtttttct
     6061 ttattctaaa gattttttac acatacaacc caatgaaatt attaaagaaa ataaatttaa
     6121 tatggcaatc aaacattttg tacaaaattc ctccgatatg aaaccgacac aacccacaca
     6181 aactatacaa gagccttcga atgtgcaacc caaagaacct gtgcaagaaa taaaaaaaat
     6241 aaaaccgaga aaagaaaaac ctatcgctaa acctaaaaaa ataatccctc cagcaaatgc
     6301 aaaggcaata agtcaaccca aaaaagatac aaacatgcag caaccaatca tgcagcaaca
     6361 aactccacaa gccagctctt accaaagcgt atctttaact agtaatagtg agcttttaaa
     6421 agaaataaaa tcagcaatcg atgaagccct aatctaccct agacaagcta gaaaaatgcg
     6481 tatgagtggg gaggttcttg tagaatttac ctggacaaaa gaaaagaaat tagaaaattt
     6541 aaaaatactt aagccttcaa aatatgattt tctaaataaa agtgctttag aaactatacg
     6601 catagcttct aaaaaatttc cacaatatga aaaaactttt catataaaaa taccattggt
     6661 atataaatta agctaaatct ttcacaatat actctatttt taatgcaaat cactccagct
     6721 ttgctaacgc ttagaagtag aagcttccta gctaaagcta actagtatta gctaattcga
     6781 aaggctttga gtttatagtc ctcaaggcta attcctaacc caaacgactt taatccacgc
     6841 tttaagatat tatttgcagc attaatatct ctatgtaaag tgttgccaca tttttcacaa
     6901 agatacactc tatctttaaa cataagattt tttttgatat ttccacatac actacaagtt
     6961 ttgcttgtat attgtggatt gacttttata aagaatttgc cattatgctt tgctttatac
     7021 tctagatatt gagagaattg atagaatgaa gtattaagaa tagatttatt taaaccactt
     7081 ttagctttta tattctttaa tttagctctt ttacacatat tcttaatttg caaatcttca
     7141 actgctagca agtcaaattc ttgtatgagt tttgaagtta tcttgtgata actatccttt
     7201 ttgattttga acttttttca tagattttat ttaattttaa ttgtgttttt ttgaaattat
     7261 ggcttaactt tgttttctcc ttttttgttt ttaatattct cctgctttgt tttctttgca
     7321 atcttttaat attcagctct actaagtagc tttgagttag tagctattaa ctctccactg
     7381 cttaaggtaa tctcattgat atttaaatca atgtcaactg cttttttaat atcaaaatct
     7441 ttgctagata ttaaagaaac attcgattca tcataaatga tactaaaagc taaatagtat
     7501 ttattgtgat ttttgataat agtgatttga ttaaacttat aagtatttcg taaatctctg
     7561 tgataacgca ttttaaaaaa tgtattcata agtctaaata tcttaaactt agtagtatca
     7621 ctatctttga ttttgtaggc ttgattattc caattaaagc tttgctttgc aaatttagag
     7681 tttttaaatt tgagaaagcc tttgttttta tctctaattg cttgctctaa ggcacgagaa
     7741 gattaatcct tgcttgttgg gttacaacac ttttatagct taattctctt gcttttataa
     7801 ggctagtttt attgattatc tatcttactt gcctttaaat aactcctatc ttttttatct
     7861 aaattcttat ttttatccca ctctcttgct gtaaatttaa acaaatatta taggcttgat
     7921 atagatgaaa cattgatgat taataagctt ttgttgttct ttgtttaggt agaattctat
     7981 atttaaaacc tttggttatt tgcattgctt tgttccatta gggctttttt tctttttggt
     8041 tatatatttt tttagggtaa ttatcttcta tgccttgatt ttctgcatat tttttaagag
     8101 tttctagcat tattccgcat aggtattcta taaaaaatta ctgattatgt caaataccta
     8161 actagagccg tacaactaac actgtaagca attcatctcc cacttaagaa gtgagagttt
     8221 tattgaataa aaaaagataa atttaaagca agtaatcttt ttttagacaa cactaaaccc
     8281 ttgcatgtat ttacagcaat atttatttca tcataaacaa cccccaaccc ataaaacctc
     8341 aataaacact ataaaataaa agtatttgta aagaacaagc aaacaataaa tctcaatcac
     8401 ccagacaaaa acaatctcaa ccgacccata aagcaataaa tcaagcaagc ataattaatt
     8461 taattgatta aactaataaa tttaatttat aagattaaca ataaaaaacc ataaattaac
     8521 caagctaatc ccacccaaac ccaaacaagc cataaattac acacactttt ttacaaacat
     8581 caattaaata gcaagactat cgataataaa aaatttatct caagtataac attcattctc
     8641 gccaacaaga atagacaatc atagtctatc caccctaacc caacattaac ccctaaccca
     8701 actaagaagt gtataacaac cccaacccat aaacctcaat aaacactata aaataaactt
     8761 gagtgattaa aaatccaacc caattattga acaaacccaa cctacataat aaaatataaa
     8821 ctagacatat aaagaacaat tgacacataa aaatagattg aataaataaa cctatacaag
     8881 taaacataaa gattaattat tgatacaaaa gattcaataa ataaataaaa agaataattg
     8941 agatataaaa acatataaac taaacaactc aaacaaccat taaatcaacc caagctaatt
     9001 aaacctataa acataaaaaa ataattaaat ataaaaacaa cgattgacgt ataaaaacta
     9061 agattttaaa tctataagaa taagataaag tagaattaac aagtccgcaa tgagctactt
     9121 tccccctgcc agtaaggcgt agtatcatca cccacgatgt gcttagcttc ttggttcggg
     9181 atggagcaag gcgtttccac atctgtataa tcacggacat tgttatttaa atattctttg
     9241 aaagattgaa tttaagaata aaacttaatc ttttattcct ttactttttt ctttattctc
     9301 tttcttcttt tcttatcttt tatctttgat aagtttttat atagaatact taaaaaacaa
     9361 tgttaagagc aagttctaat acaaactcta cttgaaagat ttctattaaa ctctaaatat
     9421 tatctatatt caaagtcttc ttaaaaacct taacaaggaa gtgatgcttt attaaagata
     9481 agccaaacgc tctattagta ctggtcagct aaaggacttt catccattac acacccagcc
     9541 tatcaaacta gtagtcttct agagagctta gagaagattc atcttagagt tggcttcacg
     9601 cttagatgct ttcagcgttt atcctttcca aacttagcta cgctgcgatg ctcttggcag
     9661 aacaacagct acaccagtgg tttgttcaac ccggtcctct cgtactaggg tcaaatctct
     9721 tcaatcttct tacgcccacg gcagataggg accgaactgt ctcacgacgt tctgaaccca
     9781 gctcgcgtac cgctttaaat ggcgaacagc catacccttg ggacctgctc cagccccagg
     9841 atgcgatgag ccgacatcga ggtgccaaac ctccccgtcg atgtgagctc ttgggggaga
     9901 tcagcctgtt atccccgggg taccttttat cctttgagcg atggcccttc cacacagaac
     9961 caccggatca ctaagaccga ctttcgtctc tgcttgactt gtatgtcttg cagttaagct
    10021 ggcttatacc tttatactct acgaacgatt tccaaccgtt ctgagccaac ctttgtaagc
    10081 ctccgttatt atttgggagg cgaccgcccc agtcaaacta cccaccagac attgtcccac
    10141 ttgaggataa ctcaagctgg ttagctaccc aaataagaaa gagtggtatc tcaacaatgg
    10201 ctcatataca actggcgtca tatactcaaa gcctcccacc tatcctgcac attcttatcc
    10261 aagtagcagt gtcaagctgt agtaaaggtc cacggggtct ttccgtcttg ccgcgggtag
    10321 gaggaatttt cacctccact acaatttcac tggatccctc tttgagacag ctcccatctc
    10381 gttacgccat tcatgcaggt cggtatttaa ccgacaagga atttcgctac cttaggaccg
    10441 ttatagttac ggccgccgtt tactcgggct tcgatcaaga gcttcgctaa tgctaacccc
    10501 atcaattaac cttcgagcac cgggcaggcg tcacacccta tacatcctct tacgagttag
    10561 cagagtgctg tgtttttggt aaacagtcgg gagggactct ttgttgtaag tttccttgct
    10621 ttcggagtaa atcctaatac aaagctaacc acaccttata ccgaagatac ggtgctattt
    10681 tgcagagttc cttaaagaga gttcttccac gcgccttaga atactcatcc cacccacctg
    10741 tgtcggttta cggtacgggc aacattagct aaacttagaa acttttcttg gctcgacggc
    10801 atcaggggtt cttctatcca tccgaagact tcaaaaagcc tttcagttct cggagtattg
    10861 ttatacggat ttgcctgtat aacctcctac gaccttagac tagcacttcc atccgctagc
    10921 ccccttagcc ctaagcgtcc ttccatcgca cactaatgtt ggtattggaa tattaaccaa
    10981 tttgccatcg tctacccctt tcggactcga cttaggaccc gactaaccct acgatgacga
    11041 gcatcgcgta ggaaaccttg ggtttacggc gttaatgatt ctcacattaa ttatcgctac
    11101 tcatgcctgc atgctcactt ctattcgctc cagcactcct taccggtata ccttcgacgc
    11161 aaatagaacg ctctcctacc acttagtaaa ctaagtctac agcttcggta cttactttag
    11221 ccccgttata ttttccgcgc aaaatcacta gaccagtgag ctattacgct ttctttaaag
    11281 gatggctgct tctaagccaa cctcctggtt gtttaagtaa cttcacatcg ttttccactt
    11341 aagtaagact tagggacctt agctggtagt ctgggttgtt tccctcttga cgacggattt
    11401 tatcactcgc cgcctgactg ctgtgattac atataaggta ttcggagttt gatagggttt
    11461 ggtacattgg tgtatgccct agcccattca gtgctctacc cccttatatt acgacacaac
    11521 gctataccta aatatatttc ggagagaacc agctatcacg aagtttgatt ggcctttcac
    11581 ccctatccac aagtcatccc ggggcttttc aacgcctatg ggttcagtcc tccactagtt
    11641 cttacactag cttcaacttg ctcatggata gatcacttcg tttcgggtct gcagcatctg
    11701 actaagcgcc ctattcagac tcgctttcgc tacggcttcg cgtttgctta accttgccag
    11761 acaccacaac tcgcaggctc attatgcaaa aggcagtcca tcaccctgta ttgctacata
    11821 gggctctgaa tgattgtaag caaatggttt caggttctat ttcactctga tcacctcagt
    11881 tcttttcacc tttccctcac ggtacttgtg cactatcgat ctggtattag tatttagggt
    11941 tggatcgtgg tcgacccgga ttcagacagg attcctcgtg tcccgcccta ctcaggatac
    12001 tgctagctaa ggtttgtttt tcgcatacgg gactatcacc ctctatggtt atactttcca
    12061 gaatgttctg ctaaacttac ctcttgcaca ttgcagtcct acaaccccca gtgcaagcac
    12121 tgggtttgcc ctcttgcgct ttcgctcgcc gctactgacg caatctctat tgatttcttt
    12181 tcctgagggt actaagatgt ttcaattccc ctcgttcgct cctatatagg taatgtatat
    12241 ctctatacat tgggttgccc cattcggaaa tctacggatc aaagcttctt gacagctccc
    12301 cgtagcttat cgcagtctag tacgtccttc atcgccttta ccagtcaagg catccaccat
    12361 tcgctcttag tagcttacct ttttttacct tttattattg attctaaaac gcatcacttc
    12421 cttgttaaag tttttatgat aagacttctt tatcttaaga cggaaagcat tcaaacactt
    12481 aatataaaac taaatgattt agtctcaact aagctgtgag tttgaaactt gtctttaatt
    12541 tataatcctt aaatccaata ttctctttat tcatagaaat aaagacagct aaaagttaag
    12601 ttaaactaaa gaaaagataa ataggtttta tcctttaaca agtcctgtaa aattgttttt
    12661 attaaaactt gcttgtgact cttaacaatg ataattaaaa agaacattta ggtttaaaac
    12721 ctaaaggaag tatatatatt aacataatca ttataaatat aaatgtatat gctacttata
    12781 tctattaaag tatattcttt tatagttaaa gataaaaaat aaatctaagt atagagttta
    12841 tattttatat ttaatctatt ttatatactt gctttagatt ttaaagcttc tttattcaaa
    12901 tcttttttat ggtgggccta acaagacttg aacttgtgac ctcaccctta tcaggggtgc
    12961 actctaacca gctgagctat aggcccttaa taaatggtgg agaatagcgg gatcgaaccg
    13021 ctgacctcct gcgtgcaaag caggcgctct cccagctgag ctaattcccc ataaacaatt
    13081 agctttatca tcaatctttg aaatctaaac aagaatcaat tgagtttata tattgaagta
    13141 atagttgtga gacttattac tttgtactct agaaaggagg tgatccaacc gcaggttctc
    13201 ctacggttac cttgttacga cttcacccca gtcgctgatt ccactgtgga cggtaactag
    13261 tttagtattc cggcttcgag tgaaatcaac tcccatggtg tgacgggcgg tgagtacaag
    13321 acccgggaac gtattcaccg tagcatggct gatctacgat tactagcgat tccggcttca
    13381 tgctctcgag ttgcagagaa caatccgaac tgggacatat tttatagatt tgctccacct
    13441 cgcggtattg cgtctcattg tatatgccat tgtagcacgt gtgtcgccct gggcataagg
    13501 gccatgatga cttgacgtcg tccacacctt cctcctcctt acgaaggcag tctatttaga
    13561 gtgctcggcc gaaccgttag caactaaata cgtgggttgc gctcgttgcg ggacttaacc
    13621 caacatctca cgacacgagc tgacgacagc cgtgcagcac ctgtctctaa gttctagcaa
    13681 gctagcaccc tcttatctct aaaaggttct taggatatca agcccaggta aggttcttcg
    13741 cgtatcttcg aattaaacca catgctccac cgcttgtgcg ggtccccgtc tattcctttg
    13801 agttttaatc ttgcgaccgt actccccagg cggtacactt aatgcgttag ctgcattact
    13861 gagatgacta gcaccccaac aactagtgta catcgtttag ggcgtggact accagggtat
    13921 ctaatcctgt ttgctcccca cgctttcgcg ccttagcgtc agttgagttc cagcagatcg
    13981 ccttcgcaat gggtattctt ggtgatatct acggatttta cccctacacc accaattcca
    14041 tctgcctctc cctcactcta gactatcagt ttcccaagca gtttaatggt taagccatta
    14101 gatttcacaa gagacttgat aatccgccta cgcgcccttt acgcccagtg attccgagta
    14161 acgcttgcac cctccgtatt accgcggctg ctggcacgga gttagccggt gcttattcct
    14221 taggtaccgt cagaattctt ccctaagaaa aggagtttac gctccgaaaa gtgtcatcct
    14281 ccacgcggcg ttgctgcgtc agggtttccc ccattgcgca atattcccta ctgctgcctc
    14341 ccgtaggagt ctggaccgtg tctcagttcc agtgtgactg atcatcctct cagaccagtt
    14401 aagcgtcata gccttggtaa gccattacct taccaactag ctgatactat atagtctcat
    14461 cctacaccga aaaactttcc ctactcaact tgtgttaagc aggagtatag agtattagca
    14521 gtcgtttcca actgttgtcc tcttgtgtag ggcagattaa ctatacctta ctcacccgtg
    14581 cgccactaat ccacttctag caagctaaaa gcttcatcgt tcgacttgca tgtattaggc
    14641 acgccgccag cgttcactct gagccaggat caaactctcc ataaaaaatt atagatagtt
    14701 taatcttttt cttcaaagaa aaagttatga aagattaaaa gaaaaacttt taatcttttt
    14761 aattattaga ttgaatagat tttacataat tgcttatgcc taaatctgtt ctggctcaat
    14821 cgatcactta tttagatttc aaagattgac taataagatt tgaataacaa tactaattta
    14881 aaagaacaaa acaaaaaatc atttttaaaa gaaaagtttt taaattaaaa aacaagattt
    14941 ataaaaaagc ttttagttta taagacaaaa accaaaagag ttaatttata aaatctacta
    15001 agctagtgaa actttataat ttaaaagatt ttaagtcctt ttttcaaaaa aggaaatgaa
    15061 agtataacca attaaactta aaaggggatt aaacaaagga ttaaatagta taaatatttg
    15121 tgtaagtatt tatataagta taatgggggc tatattttag agcactcgta atttttattt
    15181 tttatattaa caaattgact tttaagtgtt ttaaaatctg gaatataaac ataaccgcta
    15241 agcgtatcta taacgataca aagagcatgc ttttttgata acaaacgtat aatgcaatct
    15301 gaattattct ttgctaaagt tttttcatag gcataattgg cattttttaa cggagaatac
    15361 actctgccca tttcatcaaa tactaatcta gtaaatcctg aacaagatcc tttgaattca
    15421 accttttcta ttccgaatct ttttgtaaga ttaaatcttt gtgtagtttt ttcatcatct
    15481 ttactaataa ctccactttg acctgaattc attaatttgt tatgattgat tacatcaaca
    15541 gcaatttctc tatctatatt gatttcagtt ttacctaaat tagcatttcc atcgccattt
    15601 ttatccaaga aaatagtata tgtttgatca taacctgtgg cagctgattt tataaaataa
    15661 atctgccatt tacttttaaa ccactctctt tttgcaatag tcaactcatc aactcttata
    15721 ccttcttgca tcatggctaa actttgggta tattggatat cattaagaat ttgtatcgca
    15781 ccttctagta gattgtcttt ttttaagtaa agactgccta aattaaaaac tatacctaaa
    15841 atgagaatta taaacacaaa ttccaacaaa ctgaaagctt taatcatagt ttaaaatctg
    15901 atatactttt tcatattttc caagttttac tttaacaatt tttttgtcca tatcatgctt
    15961 atcggcttgt tttaaagctt ttaaataaaa cttattgcta ttttttattc cataaaatcg
    16021 caatcttttt tgcaaacttg gggctgttgc aagctctaaa acatcttgtt tttttaattc
    16081 tagtgccaat tctttagcaa aatgataatt attggcaaaa tgacgatttg gattgtttat
    16141 aaaataatac aataattgat tagcgacgat taaaaagtaa caaaatatca aaaaaattat
    16201 agaacattct ataaagattt tataccttaa tcgaaaaact ggtaatctca ccctataact
    16261 ttgcattaaa gtttttataa gcaaaggagt gcaaataaca caaaaaggca aaaaatcatc
    16321 taaaaaaagt ttttgtctta aagaaagcaa caaacaaaat acaaatgtta cgctcattaa
    16381 aaaccataat aaatttttat atttttgaaa agtcaaacga taaatagtat aaaaaaaata
    16441 cacaaaaacc aaaggagaaa aacatgcagc aaaaattcct aaggtatcta aaaaataacc
    16501 tcttggacga ccacctgtat caaaaccata aaaactgata ctcgctccaa acaaaacaag
    16561 agataaggta aataaaatag catttctttt ataaatccca aaaaagaaaa aagttaaaaa
    16621 taaaatatta aaagatttat caacaaataa tactataatc aataatatat aaaaaagcca
    16681 ttttttttca tattcgtaag cacataatat agcaagggtt aaaaaaatca ccaaagatgc
    16741 ggcattaacc agtaaagcac ttgcaacagt acccggcaat aaaacaaata acaataaaga
    16801 aaaaaaagca tcaattttag ttttagtata ttttaaagct agcaaataca aaagcaaaca
    16861 acttaaaaaa tgaaaaaata aaaaaggaag ccttaaacca aaatcatttt gcccaaaaat
    16921 aaaagttcca aaatgagata tataataaag caaactatga gaaaaaataa gtgatttacc
    16981 ctgctcacca aaataaatat cagcttcatc agcactaata ctcagtgttg aagttccata
    17041 aagcaaagcc aacaaatcaa gactaagtaa aatgatgata agtttataat ttttgatttt
    17101 ttccataatg aaaattttac aaaattaaac ttaaaatatc aatgcaaatc atacaaatat
    17161 caaatatctt aaaaattaac atcaaattga ttttagtttt tataagtata attttaaata
    17221 aaagaaggca aaaatgcaaa ctattgatca aatttttcaa acacaaatcg atattaaaaa
    17281 atctactttc ttatcttttc tttgcccttt taaagatttt aaatttttaa tagaaacact
    17341 aaaaaaagaa catccaaaag ccgttcattt tgtctatgct tatcgtgttt taaatgattt
    17401 caatcaaatt gtagaagata aaagtgatga tggagagcct aaaggaactt ctggaatgcc
    17461 aactttaaat gttctaaggg gctatgatct tatcaatgcg gctttaatca ctgtaagata
    17521 ttttggcggt ataaaacttg gtacaggggg acttgtaaga gcttatagcg atgcagcaaa
    17581 tgctgtgata aataattctt ctttactttc attcgaattg aaaaaaaata caaccattgc
    17641 tattgattta aaaaatttaa atcgttttga acatttttta aaaacttatt cttttaattt
    17701 cacaaaagat tt
//
LOCUS       DAPOLW010000017        17150 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.017, whole genome shotgun sequence.
ACCESSION   DAPOLW010000017 DAPOLW010000000
VERSION     DAPOLW010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17150
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.017"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            86..1576
                     /locus_tag="ROE18_000423"
     CDS             86..1576
                     /locus_tag="ROE18_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDX3650637.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGVNENQILQKLANTREFQDPTGDFNKTIYYELLNANNLAPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHK
                     EDYKTKKIYEISTYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEV
                     AKDYALMQLKNVANAKFLDLKNGKDNFQKDQNISESDVYYPIDLLNKAKNGDVLRPAP
                     YNNGYIIVKLNKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSLVNFKGDDIG
                     FVSRDSSRESVKVSDKILNDSEFAYFLMNVFNTDQNSSYVVINDNKAILYKINKQKLD
                     MNSDKFEQYKTMLEQNLQNLKANELKQELVDELKKIYPIKIYYKGN"
     gene            1573..2961
                     /gene="ftsA"
                     /locus_tag="ROE18_000424"
     CDS             1573..2961
                     /gene="ftsA"
                     /locus_tag="ROE18_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HDX3650638.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDRVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDTESEIKSDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            2977..4089
                     /gene="ftsZ"
                     /locus_tag="ROE18_000425"
     CDS             2977..4089
                     /gene="ftsZ"
                     /locus_tag="ROE18_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HDX3650639.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKSTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            4245..5057
                     /locus_tag="ROE18_000426"
     CDS             4245..5057
                     /locus_tag="ROE18_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HDX3650640.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNG
                     AVQISVDKNGSIEVDGAQNARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            5086..5877
                     /gene="flgG"
                     /locus_tag="ROE18_000427"
     CDS             5086..5877
                     /gene="flgG"
                     /locus_tag="ROE18_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HDX3650641.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(5944..7374)
                     /gene="glnA"
                     /locus_tag="ROE18_000428"
     CDS             complement(5944..7374)
                     /gene="glnA"
                     /locus_tag="ROE18_000428"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HDX3650642.1"
                     /translation="MGKFVNNIDDFFKFCKQNEVLFVDFRFTDMIGTWHHITYNLHAI
                     NEETFQTGIPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADPTIIVFCDVYDIYK
                     GQMYEKCPRSIAKKAIEHLKNSGIADTAYFGPENEFFVFDSVKIVDTTHCSKYEVDTE
                     EGEWNDDREFTDSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHH
                     EVAQGQAEIGVNFGTLVEAADNVQIYKYVVKMVAHLNGKTATFMPKPLYGDNGNGMHV
                     HMSLWKNGVNLFYDKDGYSGLSQTAINYIGGILKNARSVAAFTNPSSNSYKRIVPGFE
                     APCILTYSCQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDGIKNK
                     TIPVGPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRHNSYLKPVMSDIFIDDYQ
                     HLKFETQVWPVEARPTAYEFKTCYSC"
     gene            7577..8272
                     /locus_tag="ROE18_000429"
     CDS             7577..8272
                     /locus_tag="ROE18_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HDX3650643.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLNEKFPNVESFSEALELNNQAKKSSKEIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDSTADVVSN
                     DDIEALIASLGQK"
     gene            8269..9522
                     /locus_tag="ROE18_000430"
     CDS             8269..9522
                     /locus_tag="ROE18_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HDX3650644.1"
                     /translation="MIIPEIVAPAGNFTKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHERGKKIYVTLNGFHLSSQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKALKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHIFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     EGKFESSKYEKEIATLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGR
                     FFKCKGKIVLNTPYEILTPLGDVIQTCDNELGKIYQKEGKYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            9523..10017
                     /gene="purE"
                     /locus_tag="ROE18_000431"
     CDS             9523..10017
                     /gene="purE"
                     /locus_tag="ROE18_000431"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HDX3650645.1"
                     /translation="MNFVSILMGSKSDYETMKEAAKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEEKGVKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMSGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            10027..10563
                     /locus_tag="ROE18_000432"
     CDS             10027..10563
                     /locus_tag="ROE18_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HDX3650646.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPSSAKSQTAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            10575..11438
                     /gene="glyQ"
                     /locus_tag="ROE18_000433"
     CDS             10575..11438
                     /gene="glyQ"
                     /locus_tag="ROE18_000433"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HDX3650647.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCA
                     EIYKKNLNEAE"
     gene            11425..12150
                     /locus_tag="ROE18_000434"
     CDS             11425..12150
                     /locus_tag="ROE18_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HDX3650648.1"
                     /translation="MKLSEIYNFLDQLSPFNIQESWDNSGILLGDRDSEISTVYLSLD
                     IDENIIKEASENSLIITHHPLIFKGLKDLYDKTYPRAFIKEMIYKNISLISMHTNYDL
                     SHLNTYFTEEILGFKISFKDKFLIYVENSMSFEALCDWVKKKLNLQILRVSDCGKKDI
                     KRIAICTGSGGDLISKVDADCFLSGDFKYHQALEALSNQISLIDLGHFESERYFSQCL
                     AKDLKNLPLQVIITVSKNPFQYF"
     gene            12160..12876
                     /locus_tag="ROE18_000435"
     CDS             12160..12876
                     /locus_tag="ROE18_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HDX3650649.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSYEPKIDSINKTLKDAELKIEKINA
                     DLEKIDEEIKDIENQKIQNNAHISEFSAKIKDLSKKSGVVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSV
                     YDKKTKLVSEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGE
                     EIVTCPHCGRILYKEQEEQN"
     gene            12873..14030
                     /gene="waaA"
                     /locus_tag="ROE18_000436"
     CDS             12873..14030
                     /gene="waaA"
                     /locus_tag="ROE18_000436"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HDX3650650.1"
                     /translation="MIFFYYFLTWTAFLFCAVFILLLSFLKSKYKISLKSRFFLYKNL
                     HQEKADVHFHACSYGEVRSIKALVLKFDSRITTITQTGFECAKEFCKKVNYLAFENFL
                     PFWLKPCKVLVIFEAEYWLMLVFMARIYKAKIILLNARISDKSYHSYQRFSFFYKKIF
                     SYIDEVFAQSDLDKARLESLGAKNVKIFKNIKANLEIKNNKIYTKPKEKLIIFASTHK
                     DEEELLLDHFKLEENEKLIIAPRHPERFKEVENLLLNKGLEFEKFSSLKDENKKFSKK
                     ILLLDALGELVNFYAISDVVVLGGSFIEGIGGHNPIEAAYFDNVLISGKFIHNQKVLF
                     EEVENVYFCEKLKDLNDKVHYLNLKAKISKKENLDLIIQTIQKGIDARKSL"
     gene            14011..14763
                     /locus_tag="ROE18_000437"
     CDS             14011..14763
                     /locus_tag="ROE18_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDX3650651.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSYGKKVVVARALMS
                     DKARFNVIKAKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNAKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKVKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLAKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSYEIKIFNYHFRANLDSGFAKFGFDIKNLDF"
     gene            14831..16168
                     /gene="ffh"
                     /locus_tag="ROE18_000438"
     CDS             14831..16168
                     /gene="ffh"
                     /locus_tag="ROE18_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HDX3650652.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     VTKELLTLIEEDAKQNGIGQKQFLNAIKINLENILSVNGKNQGFVFASKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMDELRAVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLGGMANAVKDIDLDNSKEIIRIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            16233..16460
                     /gene="rpsP"
                     /locus_tag="ROE18_000439"
     CDS             16233..16460
                     /gene="rpsP"
                     /locus_tag="ROE18_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HDX3650653.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            16463..16705
                     /locus_tag="ROE18_000440"
     CDS             16463..16705
                     /locus_tag="ROE18_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HDX3650654.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTVISAYKSKDASSYRVTVKALE"
     gene            16698..>17150
                     /gene="rimM"
                     /locus_tag="ROE18_000441"
     CDS             16698..>17150
                     /gene="rimM"
                     /locus_tag="ROE18_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HDX3650655.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKN
                     TKEMLKIKHYNANNSTVLFENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFD
                     ILECEVFEEDKRLGKVVDILETGASYLFEIQSDEKWVEKKYPKIFFIPY"
BASE COUNT         6298 a         2078 c         3207 g         5567 t
ORIGIN      
        1 attttttggt aaaaatttta taattaaact ccacttaaac acttctacga tacaatatct
       61 ggtttaaatt taatcaagga atgatatgct tacttggatg caacatcaca aaaaatatct
      121 tgttgttact atatgggtta gtactatagc ttttgttggc gctggctttt taggttgggg
      181 tgcttatgat tttaatctca atagaagttc gagtgttgca actgtaggaa atgaaaagat
      241 aggttttagc gaatttgata ctagatatag acaaatttta agttattata atcaaattag
      301 caatggtgct ttaactccag aaaatgctga gcaactaggc attaaaaata tagctttaag
      361 ctctcttgtt gaagataagc ttttgttaaa ttttgccaaa gatttgggta ttggtgtgaa
      421 cgagaatcaa attttacaaa aacttgcaaa tactagagaa tttcaagatc ctacagggga
      481 ttttaacaaa acaatttatt atgaactttt aaatgccaat aatttagctc caaaagatta
      541 tgaaacacaa cttgcaaatg aagtaattac cgataaactt aatcaaattt ttaatattcc
      601 tagcaaagat gaggaattaa aaatgttagc ttctagttat ttcatgcaag atgctttaag
      661 tattgcaaaa attgattatg acaaaaaaaa tattaagatt aacgaagagg atttaaaaaa
      721 gctttggaat gaacataaag aagattataa aactaaaaaa atatatgaaa tttcaactta
      781 ttttttgcca gttagcaatg agaaaattga cgacaaagaa ttagaaaaat tttataatca
      841 agatgaaaat aaactaaaat ataaagattt tgcaggtaaa gtgatggatt ttcagtctgc
      901 taaaaatgaa gttgctaaag attacgcctt aatgcaacta aagaatgtgg ctaatgctaa
      961 atttttagat ttaaaaaatg ggaaagataa ttttcaaaaa gatcaaaata ttagtgaatc
     1021 tgatgtttat tatccaattg atcttttgaa taaagctaaa aatggagatg ttttacggcc
     1081 agcaccttat aataacggat atatcatagt taaactaaat aaagtagatc ctataagaaa
     1141 taaaactttt gaagaagcta gagaagaagt tttacctatg tatttaagcg aacaagctag
     1201 aaaaaattta gaagaaaaag ctaaaaatag tttagtaaat tttaaaggcg atgatatagg
     1261 ctttgtaagt cgagatagtt ctcgcgagag tgtaaaggtt agcgataaaa tattaaacga
     1321 ttctgaattt gcttattttt taatgaatgt atttaatact gatcaaaata gttcttatgt
     1381 ggtcattaat gacaataaag caatattata taaaataaat aaacaaaaat tagatatgaa
     1441 ctccgataaa tttgaacaat acaaaactat gcttgaacaa aatttgcaaa atttaaaagc
     1501 aaatgagctt aagcaagaac ttgttgatga acttaaaaag atatatccga taaaaattta
     1561 ttataaaggg aattgatttt gaatatatta ggaattgact taggctcaac ccagacttgt
     1621 gccattattg ctcaaaaaga tgaagatgga ttaaaaatta ttggtttttc caagtcgaaa
     1681 accaacgggg ttaaaaaagg tgccattacc aatatagagc ttgcttctaa atctattgaa
     1741 gaggctgtta gaagtgctga gatgatgagc ggagttcatt atgatagggt tgtggtgtct
     1801 atatcaggtg cttatactaa aagcgttgat agcataggtg ttgttaatat tccaaatcat
     1861 gaaataggca ttaaagaaat tcatcgtgct gtaagtacag ctaagcatac tgccaatcta
     1921 ccaagtggtt atgaaattat ccatgttttg ccttataatt ttaaggttaa tgatcttgaa
     1981 catgttgatg atcctttggg aatgagtggc aatcgtttag aagtttcaac ccatatagtg
     2041 atttcacaag aatctcatat taaaaatctt aagaaagcag ttgaattagc tgatttaaga
     2101 gtggataata tagttctttc aggatatgct tcagctatag cttgtttaga tgatagcgaa
     2161 aaggaattag gtgctgtttt gattgatatg ggtggagcga tttgtgatat ggttgttcat
     2221 actggaaatt caattagata taatgattgt ttgcaaattg gctcgattaa tatcactcaa
     2281 gatttatcaa tggcattgca tacaccttta aaagaagcag aaaaaatcaa gcttaattat
     2341 gcagctcttt cacaacagcc taataccctt atacaaattc cttcaatggg tgatgaaaga
     2401 aaggttaatg aagtttcttt ggatattatt tcaaacgtaa tttatgcaag agcggaagaa
     2461 actttgatga ttttggcaaa aatcttaagt gataatcgtt atgccaatgc tataggtggc
     2521 ggagttgttt taacaggtgg aatgactaag ttagcaggta ttgatgagct agctcctgca
     2581 acatttgata atcgctcagt tagactggct actgcaagaa aagatttgat tactggtttt
     2641 agtgaaattt ttaatgatcc tgaaaatact tgtgctatag gactttgttt atatggagcg
     2701 ggatatttta cgccttatga acttgattct aatgagaaat taagatataa aggggaaatt
     2761 gaaaatttta atcgtcaaat taaacaagat attgttttgc aaaaagatac agaaagtgaa
     2821 ataaaatctg atttttttga tgaaaatttg caagaaaatg atacaattgc aatacaagaa
     2881 caattagatt ttaaagagcc aaaagaaaaa aaacctagtg ttttttcaaa tatctggcat
     2941 aaaattatga atcaatttta acaaggagaa atttttatga gtgaattttt agtagaagaa
     3001 atgcaacata ataaaggtgc aaaaattaag gttataggct gcggtggcgg tggcggtaat
     3061 atgattaacc atatggttaa aatgggatta aatgatcttg atttaattgc agcgaatact
     3121 gatgcacaag ctatttcaat ttcattagca aaaactaaaa ttcaacttgg cgagaaaaaa
     3181 actaaaggtt tgggcgctgg tatgcttcct gaagtaggtg cagaaagtgc tagagaaagt
     3241 tttgaagaaa taaaagcaag tcttagtcaa agtgatattg tatttattgc ttcaggtttt
     3301 ggtggaggta ctggaacggg tgccactcca gttattgcac aagcagctaa agagattgga
     3361 gctttaactg tttctgttgt aactatgcct tttgcattcg aaggaaaaca aagaaaaaaa
     3421 cttgctgaaa gcggtctcct tgagcttaaa aaagaaagtg attctattct tgtaattcaa
     3481 aatgaaaaat tattgagcat tattgataaa aaagcaggta ttaaagatgc ttttaggttg
     3541 gttgatgata ttttagctcg tgctgtaaaa ggtatggtgt ctatcttact tgataatgga
     3601 gatattaatg ttgactttgc ggatgtaaga accatcatga gtcatcgcgg actcgcgctt
     3661 atgggtgttg gtagtgctag cggtgaaaat gctatagaag aggctctttc aaacgctata
     3721 gaatctcctt tgcttgatgg aatggatatt aaaggtgcca agggagttat tttacatttt
     3781 aaaacaagtt ctaattgctc tttgtttgaa atttcggcag cagcaaatag tatacaagaa
     3841 attgttgatg aaaatgctaa gattattttt ggttctacta cagatgatag catggaagat
     3901 agagttgaag taactattat tgcgacaggg tttgaagata aagatacagt agctaaaaaa
     3961 tctaccgaag aagctcaagc ttctaagaaa aatccttatt taagtcttaa aaaggtaagc
     4021 ggtggttacg atgaagagat aatggcgcaa attgaaacac caactttctt gcgtcgtcaa
     4081 atggattaaa attgattttt aaagcaagat tgagtcaaat cttgcttttt atagtttaaa
     4141 attctctcct aataatcttt caaatattta tttttctttg tttttaaaag ttggaacact
     4201 ctttgctttt atagttataa aatcttaaat ttataggtga aaatatgcaa aatggatatt
     4261 atcaagcaac tggcggaatg gtaactcagt ttaataaact tgatgtgatt actaataatc
     4321 ttgccaatat taatacaagc ggatacaaaa gagatgatgt ggttattgca gattttaaaa
     4381 ggatttttaa agaaactcag gatgagttgc ctatagaaaa tcacacaaga gatgcatctc
     4441 gttttgtaaa tactacaata gatggaatcc cacaagtttc tcaagaatat acggatttta
     4501 gcctaggttc tttaaaggcc acaaacaatc ctttggattt ggcaatgact agagaagatg
     4561 ctttttattt ggttcagacc aaagatggag aagtaagatt aaccaaagat ggaaattttc
     4621 aacttgatga tgagggttat ttggtaaata agcaaggata caaggtatta agtagtgatt
     4681 attttaataa tcctcagaat gctggcatac gcattcctaa tggtgctgtt caaattagcg
     4741 ttgataaaaa cggaagcatt gaagttgatg gagctcaaaa tgcaagatta tttgtagcac
     4801 aagtagatga tataagagct ttgcaaaaag atggggataa tgtctataaa atagatgatc
     4861 taacccgtat tagagatttg aaaaactcca atgctattcg ccaaggtttt tctcagggat
     4921 caaatgttaa tccagttact gaaatggtag gactgattga agcaaacaga atggtagaaa
     4981 tgtatcaaaa agttatgaca gctcatatgg atgacttaaa tcaagaagct atcaataagc
     5041 ttgcagctgt taaataattt aaaataaaat aaaaaaggat taaaaatgat gagatcactt
     5101 catactgctg ctacaggaat ggtagcgcag caaacacaaa ttgatgttac ttcaaataac
     5161 atcgccaatg ttaatacagc aggttttaag aaaagtcgcg cagaatttgc tgatcttatg
     5221 tatcaagtta tgaagtatgc aggaacttca acttcagcta ctactctttc tccttcgggt
     5281 atagaagtgg gtgtgggtgt gcgtccaaca gcggtaacta aagtttttac tgaaggaaat
     5341 ttaaaatcaa caagtactga tggtcttgat atggctattg caggtaatgg gttttttcaa
     5401 atacaacttc ctgatggcac tataggatat actagaaatg ggcaatttac aaaagataat
     5461 gaaggtaata ttgtaaattc agatggttat agacttttac ctgaaatgac aatacctgaa
     5521 ggcgcaacag caattaatgt tgctacagat ggaaccgttt ctgtaatgct accaggggag
     5581 caacaagaaa ctcaaattgg ccaagtggag ctagttcagt ttataaatcc agcgggtctt
     5641 cattctatgg gtgataatct ttatcttgaa acaggagcaa gtggtgcacc tgttgcgggt
     5701 atagcaggac aagatgggct tggaacaata agacatggat ttatagaact tagtaatgtt
     5761 cagcttgttg aagaaatgac agatcttatc acaggacaaa gagcttatga agcgggttct
     5821 aaggccatta caacaagtga tgatatgcta ggaattgtaa atcagcttaa gcgatagttg
     5881 atataaaata aataattttt aattcttttt tgtttaatgg cgtgttaaac gccattaaat
     5941 tttttagcaa gagtagcaag ttttaaattc ataagcagtt ggacgagctt ctactggcca
     6001 aacttgtgtt tcaaatttta aatgctgata gtcatcgata aaaatatcgc tcattacagg
     6061 ttttaaataa gaattatgtc ggattaaagc ttccaaactt cctcttagag tatgtggtaa
     6121 ttgctctatc cctttttcac gtatttcatc caaagtaaga tcaaataaat tttcatccat
     6181 aggacccaca ggaatggttt tatttttgat tccatcaaga cctgccatta aaagactaac
     6241 aaaagctaaa taaggattag cagtgctatc agggaagcga atttctatac gagctgaatt
     6301 tttacctatg ccataaggaa cgcgacaact tgctgatctg ttttggcaag aataagttaa
     6361 aatacaagga gcttcaaagc caggaactat tcttttgtaa gagttggaac ttggatttgt
     6421 aaaagctgca acacttctag cattttttaa aattccacct atataattta tagcagtttg
     6481 actaagtcca ctgtatccat ctttatcgta aaataaattt actccatttt tccataagct
     6541 catatgaaca tgcataccat tgccattatc tccgtataaa ggttttggca taaaagtggc
     6601 agttttgcca tttaaatgag ctaccatttt tacaacatat ttataaattt gaacattgtc
     6661 agctgcttct acaagcgtgc caaaatttac tcctatttca gcttgtcctt gtgcaacttc
     6721 atgatgatga acaaaagttt taagacctac tttttcaagg gtttgaacca tttcagaacg
     6781 aatatctact aaagaatcaa ttggctgaac tggaaaatat ccacctttgt ttcttggcct
     6841 gtgtccagta ttgtagctat cggtaaattc tctatcatca ttccactctc cttcttcggt
     6901 atcaacttca tacttagaac aatgagtagt atcaactatt tttacactat caaaaacaaa
     6961 gaattcattt tctggtccaa agtaagcagt atcagctatg ccactatttt taaggtgttc
     7021 tattgctttt tttgctatgc ttcttggaca tttttcatac atttgtcctt tgtaaatatc
     7081 atacacatca caaaatacta tgatagtagg atcagccgta aaaggatcta aaaaagcact
     7141 ttgagcatca ggttttaaaa tcatatctga tttttctata ggttgccatc catgaattga
     7201 gcttccatca aatggaatgc cagtttgaaa tgtttcttca ttgattgcat gaagattata
     7261 ggtaatatga tgccaagttc ctatcatatc tgtaaaacga aaatcaacaa aaagcacttc
     7321 attttgtttg caaaatttga aaaaatcatc tatattatta acaaattttc ccatattttt
     7381 actcctttat gtaattaaat ttataaaatt atatcataaa atttttaatt aagatttaat
     7441 taatatattt tttttaataa atttaaaaat ttaatttaaa aagattaaaa aataaaaatt
     7501 tatatttttg ttttagataa aattgattat aattttgagc aattattgaa aatctagatt
     7561 taaaaaaggg aaaaaaatga ctcaagaaga gcttgatgct ttgatgaatg gtgatgttga
     7621 tcttgattca gagacagaag cagaggtaaa aaccgaagaa tcgaataccg aagaagatgc
     7681 tttgatgtta gaagatgtca aaatagctga ttacaaacct aatcctagtg tagtatggcc
     7741 accaccccca ccaaatcagg agcataaagt tgtacatcag ttagatgatg ttacaaaaga
     7801 tagcgagctt aaagcaacgg aaatgatgga taagcttgaa agtattaata atttttttgc
     7861 ggattctgaa agtttactca aagaaataaa taaagcaata gaaaaaaata ttgatatttt
     7921 ttctaaactt aatgaaaaat ttcctaatgt ggaaagtttc agtgaagctt tagaattaaa
     7981 caatcaagct aaaaaaagtt ctaaggagat tgtcggaaat cttcaaagcg gacaagatga
     8041 agtgatgatg gcaatggatg caatgcagta tcaagatata catcgtcaaa aaatcgaacg
     8101 tgttattaat gtaatgcgtg ctttaagccg ttatatgagt tccttatttg aaggtaaaat
     8161 tgatgataaa aaacgtgtaa gttctgcagt gcatattgaa ggtgatagta ctgctgatgt
     8221 tgtaagtaat gatgatatag aagctttaat tgcaagttta gggcaaaaat gatcattcct
     8281 gaaatagtag ctcctgcagg aaatttcaca aaattaaaaa ttgctttagc ttatggcgca
     8341 gatgcggttt atgcgggtgt gaataatttt tctttaagat cacgcactgc aagagaattt
     8401 aattatgaaa gttttgaaga agctatcaaa tatactcatg agcgtggtaa gaaaatttat
     8461 gttactttaa atggttttca tttgagttct caaattgaag gtttaaaaag acatatttta
     8521 aaattgcgtg agatgaaacc tgatgctttt attgtagctt ctgttggagc tatgcgtctt
     8581 gttaaagaac ttgcacctga aatttcttta catgtttcta ctcaggcaaa tattttaaat
     8641 tatttagatg ctcaagttta taaggatatg ggtgctaaaa gggttgtaat tgccagagaa
     8701 ttagggctta aagacgctaa agctttaaag gaaaattgcg atattgaact tgaagctttt
     8761 gtgcatggtt ctatgtgttt tgcttattca gggcgttgtt taataagctc tgtgcaaagt
     8821 ggaagaatga gcaatcgtgg atcttgtgca aatgattgta gatttaatta tgagctttat
     8881 gctaaaaatc cagaaaatgg cactttattt cgcttagaag aagatgaaaa tggtactcat
     8941 atttttaatt ctaaagattt aaatctttgt tcttatatag aaaaaatcat gcaagaaaat
     9001 tgtatcagtg cttttaaaat agaagggcgt actaaaagcg aatattatgt tgcgcttaca
     9061 acaaggactt ataaaatggc catacaagat gctttagagg gtaaatttga gtcaagtaag
     9121 tatgaaaaag agattgctac acttaaaaat cgtggtttta cagatggcta tcttgtttcg
     9181 cgtcctttag aaaaaaccga cacacaaaat cataatacaa gcatagaaga aggttctcat
     9241 caagtgcatg ctataagcga agatggaaga ttttttaaat gtaaagggaa aatcgtttta
     9301 aacacgcctt atgaaatttt aaccccttta ggcgatgtga ttcaaacttg cgataatgaa
     9361 ctaggtaaaa tttatcaaaa agagggtaaa tattttatag agtttaaaaa acttattgct
     9421 aaaaacaata aagaatttag cgaaattcat agcggtaatg aacatgaaat ccaattacca
     9481 aataaaatca gtgcattaag ttttttaaga aaggaaatat agatgaattt tgtttctatt
     9541 ttaatgggaa gcaagagtga ttatgagact atgaaagagg ctgctaaaac tttagaaagt
     9601 tttggtgtaa agtatgaact tatcatctca tcagctcatc gtagtccaaa aagaacaaaa
     9661 gagtatattg caaatgctga agaaaaaggt gtgaaggttt ttatagcagc agctggaatg
     9721 gcagcgcatt tagctggagc tgttgcagct tatacaacaa aacctgtttt aggagtgcct
     9781 atgtcaggaa gcaatcttgc aagtatggat tctttgtttt ctacggtgca aatgcctagt
     9841 ggaattcctg taggaacttt agctattggt aaggctggag caatcaatgc tgcttatttg
     9901 gctatgcaaa ttttagctat ttatgatgtt gatttagcac aaaagcttaa agaagatcgt
     9961 cttgaaaaag aaaaaaaact tgtatctgat tcaaaagaag tagaagtttt attataaggg
    10021 ataaaaatgc aaacctatct tgaacttgaa gaattttgta aacttgtgca tttaaatgaa
    10081 gatgtggtta agggtatgat ggccaatggg gctttaaatt ttaaagaaga agagggtaaa
    10141 atttacatcg aagcccatca aggtactttt agtgtagtgc ctagttctgc aaaatctcaa
    10201 actgcaatgg taaattcaat gactttagca ggagaaagtt ttgttgaaaa aacaatagga
    10261 actattttaa atttacatga aaaagtttta gatgctaaag atgaaacact tgaagcatta
    10321 aaaaatgaaa ataaattttt aaaagatgcc ctttattcta tgcaagagct ttatgatgaa
    10381 gatagaaaaa ctatagaaac cttaaacaat gagttaaaac atgcgcgtga agagatagaa
    10441 tttctcaagc gtaaatataa attaatgtgg agtaaaactg cagaaatttt tggagctaag
    10501 acagagcctg atttggaaat gaataaaaat ttagaaaaac ctattgaaaa tatggaacaa
    10561 taaagagaga tacaatgact ttttcacaaa tgatacttaa tttacaaaat tattggcaag
    10621 agcaaggttg tgcgattatg caaccttatg atatgccagc aggtgcagga acctttcatc
    10681 cagcaacttt tttaagaagt ttaggaaaaa aaccttgggc agctgcttat gtggctccaa
    10741 gtagaaggcc tactgatgga cgttatggtg aaaatcctaa tcgcttaggt gcttattatc
    10801 aatttcaagt tttaattaaa cctagtcctg ataatattca agaattatat cttaaaagtc
    10861 ttgaaaattt gggttttgat ttaaaaagtc atgatattcg ttttgttgaa gataattggg
    10921 agagtccaag tttgggtgct tggggtttag gctgggaagt atggcttgat ggtatggaag
    10981 ttactcaatt tacttatttt cagcaagttg gcggtatagc agtagattta gtaagtgctg
    11041 aaattaccta tggtcttgaa agaatagcca tgtatcttca aaatgttgat aatgtttatg
    11101 atatagtttg gagtgaattt aatggagaaa aaattaaata cgcagatgtg cataagcaaa
    11161 gtgaatatga atttagtaaa tacaattttg aagtaagtga tgttaaaatc ttaaatgagc
    11221 agtttgaaaa ttcttacaaa gaatgtaaaa atattttaga acaaggacta gctttacctg
    11281 cttatgatta ttgtatgctt gctgcacata cttttaatct tttagatgca agaggagcaa
    11341 tttctgtagc acaaagacaa gattatatgt taaaaattcg tgaactttca aaaaattgtg
    11401 ctgaaattta taagaaaaat ttaaatgaag ctgagtgaaa tttataattt tttagatcaa
    11461 ttaagtccct ttaatatcca agaatcatgg gataatagtg gaattttgct tggagatagg
    11521 gatagtgaaa tttcaactgt ttatttaagc ttagatattg atgaaaatat cattaaagaa
    11581 gcgagtgaaa attctttaat tatcacacac catcctttga tatttaaagg tttaaaagat
    11641 ttatatgaca agacttatcc tagggctttt atcaaagaaa tgatttataa aaatatttct
    11701 ttaatcagta tgcatacaaa ttacgattta agtcatttaa atacttattt tacggaagaa
    11761 attttaggtt ttaaaatttc ttttaaagat aaatttttaa tttatgtgga aaattctatg
    11821 tcttttgaag ctttgtgtga ctgggtgaaa aaaaagttaa atttgcaaat tttacgtgta
    11881 agtgattgtg gcaaaaaaga cattaagcgc attgctatat gtactggaag tggcggggat
    11941 ttaatttcta aagtagatgc ggattgtttt ttaagtggag attttaaata tcatcaagct
    12001 ttagaggcgc ttagtaatca aatcagtctt attgatttgg gtcattttga aagtgagaga
    12061 tatttttctc aatgtttagc aaaagacttg aaaaatttgc cgctacaagt tataataaca
    12121 gtttcaaaaa atccatttca atatttttaa ggaaaataaa tgaataaata tctcgaacaa
    12181 ttagtgcttt tatcaaaaat agatcaagaa attgatagtt atgaaccaaa aatagacagt
    12241 attaataaga ctttaaaaga tgctgagtta aaaatagaaa aaatcaacgc agatttagaa
    12301 aaaatcgatg aagaaatcaa agatatagaa aatcaaaaaa tacaaaataa tgctcatatt
    12361 tccgagtttt cagcaaaaat taaagatctt tctaaaaaaa gtggtgtggt aaaaacagaa
    12421 aaagaagcta atgctttaaa aattgaagaa gatattgcaa aagagcaatt agacgctgca
    12481 aatgatgaga ttgtaagact agataaaatt ttagagaata aagaaactta taaaaaagaa
    12541 cttgaagaag aaaaaatcaa acaagagcaa aatattaacg agattagagt aagcattaaa
    12601 tctgaaatgg aagttcttga aaaagataga atgagtgttt atgataaaaa aactaaactt
    12661 gtgagtgaga tgaatcaaaa agttttaagt ttttatgaga aaattcgcaa atgggcgaag
    12721 aatactgctg tagttcctgt taaaaaacaa gcatgctatg gatgttttat gaaaatttac
    12781 gataagactt atctgtccgt tgtaaaaggt gaagagattg taacttgtcc tcattgcgga
    12841 agaattcttt ataaagagca agaagaacaa aattgatctt tttttattat tttttaactt
    12901 ggacggcatt tttattttgt gccgtcttta ttcttttact ttctttttta aaatccaaat
    12961 acaaaattag tttaaaatct cgattttttc tttataaaaa tttacatcaa gaaaaagctg
    13021 atgtacattt tcatgcttgt tcttacgggg aggtaagaag tattaaagct ttggttttga
    13081 aatttgattc aagaataact actattactc aaacaggttt tgaatgtgca aaagaatttt
    13141 gtaaaaaggt aaattatctt gcttttgaaa attttttgcc tttttggctt aagccttgta
    13201 aggttttggt aatttttgaa gcagaatatt ggcttatgct tgtttttatg gcacgtattt
    13261 ataaggctaa gattattttg cttaatgcga gaatatctga taagtcttat cattcttatc
    13321 aaagattttc ttttttttat aaaaaaattt tttcttatat tgatgaagtt tttgctcaaa
    13381 gtgatttaga taaagcaaga cttgaaagtt tgggagctaa aaatgttaaa atttttaaaa
    13441 atattaaggc aaatttagaa attaaaaata ataaaattta taccaaacct aaggaaaaac
    13501 ttatcatttt tgccagtacg cataaagatg aagaagagct tttgcttgat cattttaaac
    13561 tagaagaaaa tgaaaaactc attatcgccc cacgacaccc tgaacgtttt aaagaagttg
    13621 aaaatttgct tttaaacaaa ggtttagaat ttgaaaaatt tagttcttta aaagatgaaa
    13681 ataagaaatt ttctaaaaaa attttgcttt tagatgcttt aggggagctt gtaaattttt
    13741 atgcaatttc tgatgttgtt gtgcttggag gttctttcat agaaggcata ggaggacaca
    13801 atcctataga agcggcatat tttgacaatg tattaatcag tgggaaattt attcacaatc
    13861 aaaaggtttt gtttgaagaa gtggaaaatg tatatttttg tgaaaaatta aaggatttaa
    13921 atgataaagt tcattattta aatttaaaag ctaaaatttc caaaaaagaa aatttagatc
    13981 ttatcataca aactatacaa aagggaattg atgcaagaaa aagcttataa actcttagct
    14041 ttgcaagaaa aaatttcaaa tcgtgaagct aaagatttga ttgataaggg ttgtgttttt
    14101 tcatatggaa aaaaagttgt ggttgctaga gctttgatga gcgataaggc aagatttaat
    14161 gtgataaaag ctaaaaatcc tcaaattatt tttgaagatg ataagattat tgctattaat
    14221 aaaccttatg cttatgtgag tgaagattta gagaaaaaat ttaatgccaa gcttttaaat
    14281 cgtttagaca aagaaacaag tggtgtgatt ttgctttgta aagatgaaga ttttagaaag
    14341 ctttgtatag aagaatttaa aaaacacagg gtttataaaa gttatattgc ggttttagat
    14401 ggggttttgg ctgaagaggt tgaagtgaat gaacctattt ttactataaa agtaaaaggc
    14461 ggggcgttaa gtaaagtttc aaaagatggt ttaagtgcct taagtatcat tactcctatc
    14521 atgatgcagt caaaaaaaac cttagcaaaa atagttattc aaacaggtag aactcatcaa
    14581 atcagagtgc atgctaaatt tataaaacat ggcgttgtag gtgatgaaaa atatgctaaa
    14641 atttcaagcg atagaatgta tttgcatagc tatgaaatta aaatttttaa ttatcatttt
    14701 agggctaatt tagatagtgg ttttgcaaaa tttggctttg atataaaaaa tttagatttt
    14761 taaagccatt taagaaaaaa ttttgtataa tgcaaggttt aatttaaaaa ttttatagaa
    14821 aggtgataaa gtgtttgagt tagtcagcga atcttttaaa tcagcgatta ataaattacg
    14881 ttttgttgat gatgaaaaag cacttaagaa cgctttagaa accttaaaaa aagctctttt
    14941 aaaagcagat gttcaccata aggtaactaa agagcttttg actttgatag aagaagatgc
    15001 aaagcaaaac ggaataggtc aaaaacaatt tttaaatgcc attaaaataa atttagaaaa
    15061 tattttaagt gtcaatggca aaaatcaagg ttttgttttt gcttctaaac ccccaacagt
    15121 agttctaatg gcaggtttgc aagggggcgg taagactaca agcactatca aacttgcaaa
    15181 ttatttaaaa ttacgcaata aaaaagtttt agttgcagct tgtgatttac agcgtttagc
    15241 ggcagtggag cagctaagac aactttgtga agctaatgaa attgaacttt tcttcataga
    15301 aaatgaaaaa gatcctatta gggttgctaa agaggcttta aaaaaggctg aaagttctat
    15361 ggtggatgtt ttgcttgtgg atactgctgg acgtttggct atagatgaag ctttgatgga
    15421 tgagttaaga gcagttaagg atgtcttaaa tcctgatgag attttttatg ttgctgatgc
    15481 aatgagtggt caagatgggg ttaagactgc tgctagtttt aatgaagttt taggtatcag
    15541 tggggtaatt ttatcaaaat ttgatgcaga tactaaaggt ggagtagcct taggtatagc
    15601 aaaacaaatc ggtattcctt taagatttat tggtgtgggt gaaaaagtag cagatttaga
    15661 agtttttata ccagatcgta tagtaagtcg tattatgggt gagggtgatt tggcaacttt
    15721 agctgaaaaa actgctgcga ttattgatga aaaagaggct aaaaaactca atcaaaaaat
    15781 taaaaaaggt gaatttaatt ttaatgattt tcttaaccaa atggaaagta ttaaaaaatt
    15841 aggaagtatg aagtctttaa tcggtatgat accaggactt ggtggaatgg caaatgcggt
    15901 aaaagatata gatttggata attctaaaga aatcatacgc attaaagcaa tgatttcttc
    15961 aatgactcca aaagaaagag aaaatcctga tttattaaat aatgctagaa agcgtcgtat
    16021 agcagaggga gcaggtcttt ctcaggtaga agtcaatcgt tttttaaaac aatttagcaa
    16081 tgcagcaaaa cttgcaaaaa gattttcagg taaaaaagga atggagagtt tgacacaaat
    16141 gatgagtcaa gctagaagac agttttaaat tttatttata aatacttttt atagtatcta
    16201 taaataaaat ttttaatttt taaggagtgt aaatgacagt tattagactt acaagaatgg
    16261 gtagaaccaa aagaccattt tatcgtattg tagttacgga cagtagaaaa cgtcgtgatg
    16321 gtggttggat agaaagtatt gggtattata atcctatggt agaacctgaa gtaattaaag
    16381 ttgatgcaga gcgtttagct tattggaaaa gcgttggtgc aaaacttagc gataaagttg
    16441 cttctatcac tagcaaataa tcatggtaga gaattttctt agagaatacg caaaattaat
    16501 tgcagattat cctgaacaga ttgatactca aaaaattgaa ttaagtgaaa atttttttga
    16561 gattgttctt tttgcacata aggttgatac aggtaagctt ataggtaaaa atggaaaaat
    16621 gatcaatgct ataaaaaccg taatctctgc ttataagagc aaggatgcaa gttcttatag
    16681 agtaacggta aaagcacttg agtgaaaaag attttgttca agttgcaaaa cttggtaaaa
    16741 ctgtgggtct taagggttat gtaaaattgc ataacctgag cgacttttct tctcaattta
    16801 aaaaagatgc tacttttttt ataaaaaaca ccaaagaaat gttaaagatt aagcattata
    16861 atgcaaacaa ttctactgtt ttatttgaaa attatgaaga tatagaaaag gccaaagaat
    16921 taactaatct tattcttttt cagagtatcg agaaaagcag acaaacttgt aaattaaaaa
    16981 aagatgagtt tttttatttt gatattttag agtgtgaagt ttttgaagaa gataaaagat
    17041 taggtaaagt ggttgatatc ttggaaactg gagcttctta tttatttgaa attcaaagtg
    17101 atgaaaaatg ggttgaaaaa aaatatccta aaatattttt tattccatat
//
LOCUS       DAPOLW010000018        16772 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.018, whole genome shotgun sequence.
ACCESSION   DAPOLW010000018 DAPOLW010000000
VERSION     DAPOLW010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16772)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16772)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16772
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.018"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            105..1202
                     /gene="prfB"
                     /locus_tag="ROE18_000442"
     CDS             105..1202
                     /gene="prfB"
                     /locus_tag="ROE18_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HDX3650656.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGVIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASILYRMYLRFCEREGF
                     KVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWGYQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLISLKAE"
     gene            complement(1360..1566)
                     /locus_tag="ROE18_000443"
     CDS             complement(1360..1566)
                     /locus_tag="ROE18_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002927569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650657.1"
                     /translation="MFDLGNQEIMKKYPNYKLYDYTSVRTISDINNPEGKIKEMKRDL
                     EIDKTPYSSYVFLLNPNDKKTIKL"
     gene            complement(1796..2914)
                     /gene="truD"
                     /locus_tag="ROE18_000444"
     CDS             complement(1796..2914)
                     /gene="truD"
                     /locus_tag="ROE18_000444"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HDX3650658.1"
                     /translation="MNLEEENTIFKPLYSLKHSPINAYFSKNSDDFVVRERPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHPKLKILEIFTHENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQG
                     FTNYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     RRFKARDISAMGLLIGAKAYETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEE
                     LKWRYDEEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(2883..3704)
                     /locus_tag="ROE18_000445"
     CDS             complement(2883..3704)
                     /locus_tag="ROE18_000445"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HDX3650659.1"
                     /translation="MNKEDFIIKAFLNEKNGDDGAIIDDWCFSKDLFFENVHFKREWF
                     SLEQIATKAMLVNISDAISMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GTLKPNHVFIKPKLRASFFYEIAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYTLYSGEEYEILFAFDEKERQNIKTIAKKHGVKLNIFGKAVKGKYEFRGREHHF"
     gene            3791..4864
                     /locus_tag="ROE18_000446"
     CDS             3791..4864
                     /locus_tag="ROE18_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HDX3650660.1"
                     /translation="MKKLELRIFRFDKTKDYEAYYKPYIYDNYENFASFYDLLLQVQD
                     DDIYFDFDKDEDTYIVVNKQIIPLFTPLEKIAKEFDFSLCIEPLSTKRAIKDLIIDKN
                     DFLDKYKYLEKFGDEEDKKLYAKYDYLYYASEILDYLPEYMGDGVFYLASKMIEKYPE
                     KKIEILKTLADKEKGIFYHLESKNEILETTIKNLQNEILNLGLFDKNILHFDLPKTNA
                     FDNEIKELKEIKHNFKDFNIAFYGFNACDTLKSKLKAKFISYENSIKNNGFSLLNLNP
                     TLSYKIAADIILDAYDSGADFMVVKEEKDFYLFDTCAKKLMQTSGREFEDFYILSRFE
                     FLALIQGIQAPSLKNHTLKVNLI"
     gene            4861..5244
                     /locus_tag="ROE18_000447"
     CDS             4861..5244
                     /locus_tag="ROE18_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDX3650661.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIYTAKP
                     LFIISKNSPFLSIPFSKEALFESLNEFDNTLKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            5237..5920
                     /gene="rsmD"
                     /locus_tag="ROE18_000448"
     CDS             5237..5920
                     /gene="rsmD"
                     /locus_tag="ROE18_000448"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002899073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HDX3650662.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPPKEKTKKTKETKLYT
                     NIESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALMAAEA
                     LSNHALKAYAIELDAKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPPFDTREGFSDIYEKIYHFLENLDLKTLNLIIFEHHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYAY"
     gene            5979..7025
                     /locus_tag="ROE18_000449"
     CDS             5979..7025
                     /locus_tag="ROE18_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HDX3650663.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGAGSHSTAATVMGG
                     ANVEREIPQNFSQNNDLTLSLKVADFKTANDIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNAVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            7025..7366
                     /locus_tag="ROE18_000450"
     CDS             7025..7366
                     /locus_tag="ROE18_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650664.1"
                     /translation="MKVDNFLNTYSMNSALLDRAAKARSLESSIKINDNDIVTKSKED
                     KALKEQTNAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            7429..7626
                     /gene="flgM"
                     /locus_tag="ROE18_000451"
     CDS             7429..7626
                     /gene="flgM"
                     /locus_tag="ROE18_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HDX3650665.1"
                     /translation="MINPIQQSYVANTALNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATAAAIADSLI"
     gene            7669..8103
                     /locus_tag="ROE18_000452"
     CDS             7669..8103
                     /locus_tag="ROE18_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HDX3650666.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDGLVNKMFDINDGTNNAYGDKKTNPESIFKINV"
     gene            8113..9939
                     /gene="flgK"
                     /locus_tag="ROE18_000453"
     CDS             8113..9939
                     /gene="flgK"
                     /locus_tag="ROE18_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HDX3650667.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITTGGVQVGTGTAVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRFP
                     DLQNTGILQDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNDNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASDMKVKDSILNDPSTVRASSNGVDSGNDMANKIIQ
                     LQYKKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            9956..10720
                     /locus_tag="ROE18_000454"
     CDS             9956..10720
                     /locus_tag="ROE18_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HDX3650668.1"
                     /translation="MKNFIHLKAKLDFLANQKNTNHSLFETPDPLQIAKIHNDEFIAL
                     ICALFAYGNAKNIVNFLKKLDFSLLNLQEKQIKKELKNLKYRFQNEKDIQEIFITLSR
                     LKNEISLYELFYQAYQERENTTDAILAFMQKIKTLNSYSSYGYDFFFGKIWQNTPTSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHAHKISLTLGLLKRKIYDYKSV
                     LELTQNLKKLDANDPIKYDFALYRLGQSKEIDKFKE"
     gene            10724..11487
                     /locus_tag="ROE18_000455"
                     /pseudo
     CDS             10724..11487
                     /locus_tag="ROE18_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
     gene            complement(11480..12661)
                     /locus_tag="ROE18_000456"
     CDS             complement(11480..12661)
                     /locus_tag="ROE18_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HDX3650669.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYFMHSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFV
                     IFIVMLILAYKNFHSFAFSCDFLFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISK
                     AFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVAMKSGRL
                     EVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNF
                     N"
     gene            complement(12658..14216)
                     /locus_tag="ROE18_000457"
                     /pseudo
     CDS             complement(12658..14216)
                     /locus_tag="ROE18_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
     gene            complement(14206..14793)
                     /locus_tag="ROE18_000458"
     CDS             complement(14206..14793)
                     /locus_tag="ROE18_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HDX3650670.1"
                     /translation="MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKY
                     NKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISREKLYKELEEVKAVQENTHISKIE
                     IDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
                     LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK"
     gene            complement(14797..15405)
                     /locus_tag="ROE18_000459"
     CDS             complement(14797..15405)
                     /locus_tag="ROE18_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDX3650671.1"
                     /translation="MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLA
                     KKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILDEVGMYDYAMLESIRIYSDSISF
                     VLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
                     QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR"
     gene            complement(15398..16732)
                     /gene="mshL"
                     /locus_tag="ROE18_000460"
     CDS             complement(15398..16732)
                     /gene="mshL"
                     /locus_tag="ROE18_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HDX3650672.1"
                     /translation="MSINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNI
                     HQMSLDEIFNFFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDA
                     KPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIEKEIIVLLKNSHEDYEAKTPIINPNAG
                     LIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFNIGLN
                     SQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQ
                     AIISVGDTINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRIN
                     PSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNS
                     INFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE"
BASE COUNT         6199 a         2680 c         2302 g         5591 t
ORIGIN      
        1 agaaattttt taaattttca caaagcataa gaaattgtaa taatagattt tttaatgtaa
       61 aatttgctaa aataatatct taaaaatgaa gaaagaaaat ttttatggat aattacgaat
      121 ttagcgaact tttaaaaact ttaaaaaaca aagtcggcaa catagcctcc atcatcaagc
      181 ctgaaaatat ccaaacaagg cttaaagaaa tcgaagagct tgaaaattct ccttcttttt
      241 ggagtgatgt taaacaagca ggagtcatag gtaaagaaaa aactaaaatc accaatctac
      301 ttaaaaacta tgaaaatgct tttaatgctc taaatgacgc aagcgaactt ttcgatctgg
      361 ccaatagcga aaacgataca gaaacacttg aagctttatt taatgacgca ccaaaacttg
      421 aagataccat cacaagtctt gaaatttcca tgcttttaag cggggaaaat gatggtaaaa
      481 atgccattgt ttccattcac ccaggtgcag gtggaacgga aagtaatgac tgggcaagca
      541 tactttatag aatgtattta agattttgtg aaagagaagg ttttaaagtc gaaactttag
      601 actttcaaga aggcgaagaa gcaggactta aagatgtgag ctttttagtt aaaggagaaa
      661 atgcttatgg ttatttaaaa gctgaaaatg gtatccatcg tttggtaaga acttctcctt
      721 ttgatagtgc aggacgccgt catacaagct tttcaagtgt tatggtaagc cctgaacttg
      781 atgatgatat agaaattgaa atcgaagaaa aagacataag aatagattat tacagagcaa
      841 gcggtgcagg tggacaacat gtcaataaaa cagaatcggc tgtgagaatc acgcattttc
      901 caaccggcat agtcgtacaa tgccaaaatg acagaagtca gcacaaaaac aaagccaccg
      961 cttttaaaat gctaaaatct cgcctttatg aacttgaact catgaaacaa caagatagtg
     1021 ctaatactgg agaaaaaagc gagataggtt gggggtatca aatccgttct tatgtgcttt
     1081 tcccttatca gcaagtcaaa gacaatcgca gcggagaagc tttttctcaa gtggataata
     1141 tccttgatgg ggatatcaaa aaaatgatag aaggcgtttt aatttcctta aaagcggagt
     1201 aacaggctta aaaataagta atttctgcaa aatgtcggta taaaaaaatt agaaagatag
     1261 cgggattttc ccgcttgttt tattatcttg cataaaacct aagagcatca ttcacagaat
     1321 aataaactct tttcttaaaa tctttatcgc aataaacact cacaacttta tagtcttttt
     1381 atcgtttgga tttaataaga aaacatagct tgaatatgga gttttatcta tttctaaatc
     1441 acgcttcatt tctttaattt tgccttctgg attgttaata tcactaattg ttctgactga
     1501 agtataatca taaagtttat aatttggata ttttttcata atctcttgat tacctaaatc
     1561 aaacatagct tgatcgttgc cattgttttt ttactcgact aaatcgccat cgccacaatc
     1621 tacaatcaaa gtcatagctc ctaaagccaa agcacttgtt aaaatctttt tcattatttt
     1681 tgctcctagt tttaaaatta aattaatata actataccta aatttaaaat ttaaatatca
     1741 tttttgcaat aaattctaaa gtaaaaatca cgtaaaaatt taactcataa ttatttcact
     1801 caaacaaatt tttatgcaaa atttcttcta aaaccacagt agcataagag cctttttgca
     1861 agaaaaactc tatacaaaaa tgagcttttt cttcatcata acgccatttt aactcttcta
     1921 aatatcccca cataaagcgt cttgaacctt gcattttagc cttaaactcc aaagtatctt
     1981 taaaaatttc attttctaaa tttaaggcca aaccttctcc tgtttcataa gccttagcac
     2041 cgattaaaag ccccatggcg cttatatctc ttgccttaaa acgcctaagc tcagcactta
     2101 aatcctcgca taaaaaacac tttccaaaag gataatgccc taaaacctca ccttttaaaa
     2161 gcttaaaaaa ttgttcttgt tttttaagtt ccttagcttc ttctttagaa attttataaa
     2221 tttggatcaa ttctttttcg ctaaaatcat ttgcaaaatg cgataactcc actcttttac
     2281 tcaaatagcg attaaaaagc tcactttgaa aagctgaaat taaaaactct ttcattttta
     2341 catttttcat ttttttgcca cgcaaaattt caagcccttc tttataatta tccccaaatt
     2401 ttccaaaacg ctgataacca aaataattcg taaaaccttg cttatccaaa ttcatcaaag
     2461 cttgttctag ttttaaagca tcgcttggta aaactttttt taagcgtatg aaaaaagtat
     2521 ttccttttaa atgccctatt cttagcttgt tttcatgggt aaaaatttct aaaattttaa
     2581 gtttaggatg agaaaaattt gacaaaaaac tctcaaattt tttaggcata gaaaggtatt
     2641 gaaaggttga tccttgctta tctttaagcc ctgcataacc aaaatctctt attttaaccc
     2701 cgcttgtttc gcttaaaatt tttaaagctt catttgtggt taaatctttt ttattgatat
     2761 gcaaaataag atgttcaccc ttaccgctaa attcatacaa aggcctttca cgcactacaa
     2821 aatcatcgct atttttacta aaatacgcat taataggact gtgttttaaa ctatacaaag
     2881 gcttaaaaat ggtgttctct tcctctaaat tcatattttc ctttcactgc ttttccaaag
     2941 atatttaatt tcacgccgtg ttttttggct attgttttta tattttgacg ctctttttca
     3001 tcaaaagcaa acaaaatttc atattcttct ccgctataaa gcgtataatc atcgagtttt
     3061 ttaaaccaag aaataccgca tttatttaag gctaaaagtc ttgataaatc cttgcttaaa
     3121 ccatctgaaa tatccatagc acaagaaatt aaaggtgcga tttcataaaa aaaactagct
     3181 cttaattttg gctttataaa tacatggttt ggttttaaag tgcccccatt ttgtaaaatt
     3241 tcaagccctt ttaaacttcg tcctaatttt cccgtataag caagtaaatg cccctttttt
     3301 aaaccttttc taaaaacagc tttatcgtta atctttgaaa tgatagtaag actaatgtct
     3361 attttatcat tgcttatagt atcaccgcct atgattttta tattaaattt cctagctgtt
     3421 tttaaaaaac ctttttgcaa ggctttgatc tcattttcgc ttaaattttt tggtaaagca
     3481 agtcctaaaa gtgcgtattt tggtacagca ttcattgaaa tagcatctga gatattaaca
     3541 agcattgctt ttgtagcaat ttgctctaag ctaaaccact ctcttttaaa atgcacattt
     3601 tcaaaaaaca aatccttact aaaacaccaa tcatcaataa tagctccatc atcgccattt
     3661 ttttcattta aaaaagcttt gataataaaa tcttctttgt tcataatgcg tgattttata
     3721 aaatttcctt ttaaattcta gtgaatttta gaaaaatttt atataatata aaaatattta
     3781 aggaaaaacc atgaaaaaat tagaattaag aatttttaga tttgataaaa ccaaggatta
     3841 tgaggcttat tataaacctt atatttatga taattatgaa aattttgcaa gtttttatga
     3901 tctgcttttg caagttcaag atgatgatat ttattttgat tttgataaag atgaagatac
     3961 ttacatagtt gtaaataagc aaatcatacc actttttaca cctttagaaa aaatagcaaa
     4021 agaatttgat tttagtcttt gtatcgagcc tttaagcaca aaaagagcca ttaaagatct
     4081 tatcatcgat aaaaatgatt ttttagacaa atacaaatat cttgaaaaat ttggtgatga
     4141 agaggataaa aaactttatg caaaatatga ttatttatat tatgcaagtg aaattttaga
     4201 ctatcttcct gaatatatgg gcgatggagt gttttatttg gcttcaaaaa tgatagaaaa
     4261 atatcctgaa aaaaagatag aaattttaaa aactctagca gataaagaaa agggtatttt
     4321 ttatcatctt gaaagcaaaa atgaaatttt agaaacaacg atcaaaaacc tacaaaatga
     4381 aattttaaat ttagggcttt ttgataaaaa tattttacac tttgatttac ctaaaaccaa
     4441 tgcttttgat aatgagatca aagaacttaa agaaattaaa cataatttta aagatttcaa
     4501 tatagctttt tatggtttta atgcttgcga tactttaaaa tccaaactta aggctaaatt
     4561 tatttcctat gaaaacagta taaaaaataa tggctttagc ttgcttaatc taaatcctac
     4621 gctaagctat aaaatagccg cagatattat tttggacgct tatgatagcg gggctgattt
     4681 tatggtagta aaagaagaaa aagattttta tctttttgat acttgtgcta aaaaacttat
     4741 gcaaacaagt ggaagggaat ttgaagactt ttatatttta agccgttttg agtttttagc
     4801 ccttatccaa ggcatacaag ctccatcatt aaaaaatcac actttaaagg ttaatttgat
     4861 atgaaaatct ctttagaatg caaagatctc atcatagaaa aaactttaga acttttttta
     4921 aaagatcatt tggtaatgaa aaaaaattgt gatttcatca ttagcgatga aaaaatttat
     4981 accgcaaaac ccttatttat catctctaaa aactctccat ttttaagcat accatttagc
     5041 aaagaagcct tgtttgagtc tttaaatgaa tttgataata ccttaaaagc agcagctttg
     5101 caacttgcac ttgaacaaaa aagactgctt gaagaaaaaa ttgacgctat tgctttggaa
     5161 tttaaaaaag attatgaaaa taaaatcgat cttgccataa aagatcttaa aaacaaactc
     5221 gtaaaagcac ttaatgatga atgatgaatt tataagcgtt aaagactttt ttaatcacaa
     5281 tgaaaaaaga aaaaaatttc ttcaaaaaca agaaattaaa cctcctaaag aaaaaacaaa
     5341 aaaaactaaa gaaacaaagc tttatacaaa tatagaaagt ggtaaataca aagggaaaaa
     5401 actactttta cctagtctta caacaacaag aagtactaaa agcatagtca aaagttgtgt
     5461 ttttaatgta ataagagaag atttaagaag taaaattttc attgaagcct ttggaggaag
     5521 tgctttaatg gcggctgaag cactaagtaa tcatgcttta aaagcttatg ctatagaact
     5581 tgatgcaaaa gcttataaaa ttgctttaga aaatgctaaa aatatagatc caaatttaga
     5641 agtgatccat gcaaatactt ttgaaatttt acctaaactc atagaaaatt caaaaaatga
     5701 aatcatctta tatcttgacc caccttttga taccagagaa ggttttagcg atatttatga
     5761 aaaaatttac cattttttag aaaatttaga tttaaagact ttaaatttaa tcatttttga
     5821 acaccactca accataaaaa ctcccgaaaa aatccaaaat tttcaaaaag tcaaagaaaa
     5881 gaaatttgga tcaactagct taagctttta cgcttattaa cttacttgga acacttcttg
     5941 cttgatctat catcaacaat agattaaagg aagaatccat gagagtttta acgatatttt
     6001 tactctttat gacaagcatt tttgcagtgc aaatcaagga tgtagcaaac actgtaggtg
     6061 taagagataa ccaacttata ggttatggac ttgttgtagg gcttaatgga agcggcgatg
     6121 gaacaagctc taaatttaca ctacaatcca tctcaaacct tttgcaaggt atgaatatca
     6181 aagtagatcc taacgatatc aaatcaaaaa ataccgcagc tgttatggtt acagccaaac
     6241 ttccagcctt tgcaaaaagc ggagataaac ttgatattac cgtttcatct atgggtgatg
     6301 caaaatcttt acaaggcgga acacttttac tgactgcact tcgtgggatt gatggtgaaa
     6361 tttatgccat agcacaaggc tctatctcaa caggaggttt aacacctaga ccaggaggag
     6421 caggttctca ctcaactgct gcaactgtaa tgggcggagc taatgtagaa agagaaattc
     6481 cacaaaattt tagccaaaac aatgatctaa ccttaagttt aaaagtagcg gattttaaaa
     6541 ccgcaaacga tatagaaaga gttttaaata ctgtctttgg cgaagaagta gctaaagcca
     6601 tcgactctcg cacagtaaaa ctcaaaaaac ctgaagatct ttcaaatgtt gattttatgg
     6661 caagagtttt agaacaagat atagcttata aaccacaaag caaagttatc atcgatgaaa
     6721 gaacaggaac agtgattgct ggagttgatg tagaggtaga acctgtttta atcactcata
     6781 aagatatcac tataaaaata gatccaaaca ataacgcagt agctaatcaa aatgaaatcg
     6841 atatgaaaga tggtggtttt gtagatccaa gttcaaatac cttaagaatc aacaatgcaa
     6901 aaagcacagt tgcaaatata gctagaatgc ttaacaaact tggagcaacc ccaaatgaca
     6961 ttattgctat tatggaaaat ttaaagcgcg caggtgcaat taacgcggat ttggagatca
     7021 tctaatgaaa gtggataatt ttttaaatac ttatagtatg aatagcgctt tacttgatcg
     7081 tgcagccaaa gcaagaagtt tagaatcaag catcaaaata aatgacaatg atatagttac
     7141 aaagagcaaa gaagataaag ccttaaaaga acaaaccaat gcttttgagg catttttttt
     7201 aaagcaagtt ttagacgtat ctttaaaaag tcaaaattca ctctttggaa aagatgccag
     7261 cgatgaaata tactcttcca tgtataatga taccatgagt aaagctttaa gtggaggtat
     7321 gggtttttca aaattattat acgatttttt aaaagaaagg ggttaagttt tttaaattta
     7381 ggtcgatatg gtttgtagag gattataact aagatcaagg aggcagaaat gatcaatcct
     7441 atacaacaaa gttatgtggc aaataccgca ttaaatacaa atagaataga taaagaaact
     7501 aaaacaaacg atactcaaaa aacggaaaat gataaagcga gtaaaatcgc agagcagatt
     7561 aaaaacggta cttataaaat cgatacaaaa gctacagctg ctgcgattgc tgactcttta
     7621 atctaaaact ttcattctcc ttttttttga gagagaaaag gagaaaatat gcttaaacaa
     7681 agacttgatg aagtaaatgc tatcttagca aaacttattg ctttaaccga agaagatata
     7741 gaaaatatca aagtggctaa acatgagagt gtaacgccaa gtgtagaaga aaaaaacaaa
     7801 cttatcgcgg aatttattac agctaaaaaa caacttgatg ttgccttggt tgagctaaat
     7861 aatagctcta caaaagggct tagtgaactc ttagatgatg aagataaaca aaaactagat
     7921 ctacttaaaa aaaatcttca aaaccttcat agtaaaaaca aagagtatgc taaatttgtt
     7981 cttattgtca aagattttct tgatggctta gtaaataaaa tgtttgatat caatgatgga
     8041 acaaataatg cttatggaga taaaaagaca aatccagagt caattttcaa gatcaatgta
     8101 taaggattta taatgggtat ttttggaaca ttatacacag gtgttacagg cttaaaggca
     8161 agcgaagttc aaatcgcaac aactggaaat aatatctcaa atgctaatgc aactttttat
     8221 acacgccaaa gagtggtgca aactacaaat ggatatatta caacaggtgg agttcaagta
     8281 ggcacaggaa ctgctgtaga aagtatagtg cgtttgcatg atgagtattc ttactataaa
     8341 ttaaaaggtg catctactca actagaatat actaaatata tggcttccac tttacaagaa
     8401 attgcgcagc gttttcccga cttacaaaat actggaattt tgcaagattt agaaaattat
     8461 aacaaagctt ggaatgattt tgcatctaac cctaatgaaa atgccacaaa aatagccctt
     8521 gtaaaagctt ctcagacctt aacagaaagc gttaataaca cttttgcaac cttagataaa
     8581 atccaaaaaa aagtaaatga tgatattaaa aatacagttg atgagattaa tagaattggc
     8641 gaagaaattg ctactataaa taaacaaatt tatggacaag aagccttacc aacagaacac
     8701 gcaaatgaac ttagggatag aagagatgaa cttgagctta ctctttcaaa gctagttagt
     8761 gcagttgcaa gcaaaaatga aatcaatcaa gacaatcgcc ttgatacaac catcactgat
     8821 ccaggacatc aatacaatct aagtatagaa ggttttagta tagtagatgg aataaatttt
     8881 catcctttaa agcttgatta tgatgataaa aataaatctt atagcattta ttatgaaact
     8941 cctgatgaaa aagttcgcga tcttactgca aaaattagcg gtggacagct tggtgctcaa
     9001 cttgacttac gcggtagaaa ctatagcaaa agcgaaggaa aatatgaaga tggaattatc
     9061 caaggttata tggattcttt agatactttt gctaagacca tgatcaatga aactaacaat
     9121 ctttatgcaa gttctgcgaa aagttctgtt acttctgatt atctatctgg gcttaaggga
     9181 gatattcctt tagttaatta cgatagaacc atacaaccag gaagttttga tatagtcatt
     9241 tatgatgata aaggcgataa aaaactcacc aaaaccatca ccatagatgt aaatacaacc
     9301 atgaatgata tcatgcgcca aatcaatgct aatacagatg ataatgacaa taaaaattca
     9361 aacgatgatg ttgatgatca tatcaatgca agttttagct acgatgcaaa aactggagat
     9421 ggtttatttc aaatcaatgc aaaatcaggt tttaaggtag ccattgaaga taagggcaca
     9481 aatttcgcag gtgcgtttag cataggtggt tttttcagcg gaactgatgc aagtgacatg
     9541 aaagtaaaag attccatctt aaatgatcca agtacagtaa gagcaagctc aaatggagtt
     9601 gatagtggta atgacatggc aaataaaatc atccaacttc aatataaaaa agttaatttt
     9661 tataatgaag atggcactat cgataatctt actatggaag aatattaccg caaacttaca
     9721 ggtaaaatag cctcagatgg tgaaaataac aatgtcgtca attcaagcaa tgaaactctt
     9781 tataattctg tttatagcga gtaccaatct aaaagtggcg taaatacaaa tgaagaatta
     9841 gccgccctta tacaatatca atcaagttac ggtgcagcag caaaaatcgt ctcaaccgta
     9901 gatcaaatgc ttgatacctt actagggctt aaatcttaag ctctagtaat atcaaatgaa
     9961 aaattttatc catcttaaag ctaagctcga ttttttagcc aatcaaaaaa ataccaatca
    10021 ttcccttttt gaaactccag atcctttgca aattgctaaa attcacaatg atgaatttat
    10081 tgccttaatt tgtgctttat ttgcctatgg aaatgctaaa aatatagtaa attttctaaa
    10141 gaaacttgat ttttctttat taaaccttca agaaaaacaa ataaaaaaag aacttaaaaa
    10201 tttaaaatac cgcttccaaa atgaaaaaga tatacaagaa atttttatca ctctttcaag
    10261 gctgaaaaat gaaatttcac tctacgaact tttttatcaa gcctatcaag aaagagaaaa
    10321 taccacagat gccatcttag cttttatgca aaaaatcaaa accttaaatt catattcaag
    10381 ttatggatat gattttttct ttggaaaaat ttggcaaaac acccctactt cacctcttaa
    10441 acgctataat atgtatctaa gatggatggt tagaaaagat gaacttgatc ttggactttt
    10501 taccaaaatt cacaccaaag atcttttaat tccacttgat acacatgcac ataaaatttc
    10561 cttgacttta ggacttctaa agcgtaaaat atatgattat aaaagtgttt tagaactcac
    10621 acaaaattta aaaaaattag atgcaaatga tcccataaaa tatgactttg cactctatcg
    10681 tttagggcaa agtaaggaaa ttgacaaatt taaggagtga agaatgggtt ttgagcactt
    10741 aaatacgatt tattatttca tacttttttt tgtagctctt tttgctggtt ttatagattc
    10801 tattgtaggt ggaggagggc ttattactct accagcactc atagcctgtg gaattcctgc
    10861 gcatttatcc ttagcaacaa acaaactcca aagcgtcttt ggttctttta cggctacttt
    10921 aacttatttt aaatccacca ctctacctcg tcttgcttgg ggtgtttttt tcacagcctt
    10981 aggagcagct ataggaagtt atagtgttct ttttgtaaaa gatgagcaat taaagcttat
    11041 tatcttaatc tttttaactc ttaccttctt atatacagcc ttacgtccca acttaggcaa
    11101 acacgaaagc gaacctaaaa taaaaaatat caaaattttt catttaattt gtggcttaac
    11161 tttaggattt tatgatggat ttttagggcc tggaacgggt tcattttgga tttttgcttg
    11221 tgtgatgcta ctaggtttta atatgagaaa agcgagcatt aatactaaaa ttttaaattt
    11281 cacaagcaac atcattgctc ttgctatatt tttatggcaa tatgaacttt tatgggctgt
    11341 aggtttgctt atgggtgtag gacaagtttt aggagcttat ttaggctcaa aacttgtatt
    11401 aaaaactaat ggaaagttta taaaacttta tttttaatcg ttgtaggagc tactattatt
    11461 aaagtagctt gggattattt tagttaaaat tgacccctga gctaagctcc cacataggta
    11521 aaaatatacc taaagccaaa aacaaaacta aaagcgctac aaataaagtc atcataggct
    11581 ctaaaaaaat caaaaatcta tccatcaaat tttcgctttt ttgttgataa tatttggcaa
    11641 tttcttcact taatacttca agtcttccac ttttcatcgc aacactaagc atagaaaaca
    11701 ccaaagaatc aaaaatatca atctttttaa aagcctgact taactcaaga ccagaatcta
    11761 taaaactaaa aagtttttta tactgaaaaa ttaaaaattt attttcaagc cctataatag
    11821 ctaaatcaaa agctttagat attgaaattc cattttttaa aagcaaagaa aaaaccataa
    11881 aaaaataata attttgatta taaataatca aacgagaaat caaaggtact tttaaaaata
    11941 aaaaatcgca agaaaaagca aaagaatgaa aatttttata agctaaaata agcataacaa
    12001 taaaaataac aaacaaaaat atgcaaaaaa ttccatagtc atctaaaaaa ttataaattt
    12061 ctaacattac atgcgtgata aaaggcaaac tcgcgcctaa attttcaaat aaatctttaa
    12121 aattaggcac tacaaaaagc attaaaaaca aaaatgctcc gataatactt aaaaaaacca
    12181 aagtaggata tctaaaagcc ttttttaatt gtttttgact ctctaagctt ttttctcgaa
    12241 gtttagaaat ttgactaaac acttcactga tttttcctgt cttttcagcc gttttaatca
    12301 aagctaactc cgcacgattt aatccaaaat tagcattttc aaaagcttga tttagatttt
    12361 gggctaaaat taaattgtct aatatttttt tcataatctt gcaagaatgc ataaaatata
    12421 attctctaat cgcttcttga acacttaatc caacttcaca caacaaagct agctctttaa
    12481 aaaagagtat aaaattttca tcctttaatc tctgaaaatt agatttttga atttctttta
    12541 tatcaatgat tttccaattc tttgataagg cttttgcttg tgctgtattt aaattttcag
    12601 cttttatagt ttttgtataa ttttgattgt ttttaagaaa ttctacttca taaaatttca
    12661 tcttacaacc cttaaaagct catctatact tgtaagacct tctttggctt tttttaaacc
    12721 ttgttcaaac atagtttgaa agccatattt ttttgcaagc tccattaaaa tcgttttatc
    12781 ttgattttcc ctaattgcac aagctaaatc ttcattgatc tctaagcact cagcgattaa
    12841 ttctctgcca aaaatccact atgatgacaa cgctcacatc cttttggttc aaaaaattca
    12901 ccttcaaatt caatataatg ttttttgctt ttttgcttac accaaggaca aagttttcta
    12961 accaaacgct gtgctataac aagactcaaa gccgatgcta tcaagtaact ttttgcttgc
    13021 atatccaaaa gcctatcaat ggtactaaga gcatcattag tatgcaaggt gcttaaaagc
    13081 aaatgacctg ttaaagaagc tttaagtgca atatctaaac tttcttcatc gcgaatttct
    13141 cctatcatga taatatcagg atcttgcctt aaaattgctc ttaaaacact attaaactcg
    13201 actccaactt ttgaattgag caaaatttgc tgcactaaag gaattttata ttctatagga
    13261 tcttctgcgg aaataatctt tttttcaata cttttcaact catttaaaca cgcgtataaa
    13321 gttgtgcttt taccactacc tgtaggaccg gttaataaaa tcattccatt gggacgatgt
    13381 aaaatctttt ttaaaatttc taaattttta tttccaagat ttagtttata caaatccaaa
    13441 atttctttat catgttttaa aattcttata acaacacttt cgccataaat caaaggcaaa
    13501 catgaaacac gaaaatcata tctttcattt tcaaaatcta attcaaaact tccatcttgt
    13561 gtttttcttg attcagctaa attcaaacaa gctaaaaatt tgacatgaaa aaccaaagct
    13621 tcataaatat ccttctcaaa aatagcaaat tcacgcaaaa ttccatcaac cctaaaccta
    13681 atcaaagcat cattatttct tgcctctata tgaatatcac tcgcatgaaa agataaaatt
    13741 tcatgtaata aaaaatcaaa aatttgactg atgcaacttt gatcatctct tttgtgattt
    13801 tcttgccatt caagtctaag cttaatgctt aatcttttaa tctcctcttg aatgcgaatt
    13861 tgatttaaaa ttttagctat ctttaattca tcggcaattg cagtgtcgat tttttcacaa
    13921 atcataaaag tcttaacttg ctctaaaagc tctaaagaac aaggtttgga tctaataatc
    13981 ataaagccgt cattgttttt aataagcaga aatttaaatt ttaaaagtaa agaaaaaggt
    14041 ataccttcat aaataaaatc attatcttca tctaaatcaa caaaatgtaa attacaaaaa
    14101 tttgctaatt tgttaaaaaa atcccaagaa gtgatattaa atttagtgca aatttcatca
    14161 agacttattt cattatcaat ataagcttga aaaattttat ccattctact ttccatctaa
    14221 ttccattaaa ccataataat ttatataagc atctaaagca ctttgagctt ctttttcttc
    14281 acctaaagct cttttagcct gagcaaaaat cagccaagaa tcttgttttt gcttgtcaag
    14341 ttcattggct tttaaagccc aaaatattgt cttttgataa gctttaatat caaaatactt
    14401 cttagctaaa tttaatgcct tttcatagct tggattttga taaaaagatt tttttaaatc
    14461 agaaatattt aaaattttag aatcaatttc tatcttgcta atatgtgtat tttcctgcac
    14521 cgctttaact tcttctagtt ctttatataa cttttcccta gaaatcttat ttttttcttg
    14581 taaaatttgc gcttgaagaa tcttttgctc caaatgcttt ttatgttcaa tagcctgcaa
    14641 ataaatattt ttttgcttat tatatttttg cattagcaca aaaaaacaaa atgctattac
    14701 tgatattaga ataattaata ataaatattt taaatatttt ttaagtaaaa agtatttata
    14761 cctaagctca agctctttaa ttctttcttg catatcttac cttaataagc cattctctaa
    14821 agcactaagc tttaaaatat actcttgact tttgttttta tcaaaaaaac tatttatctc
    14881 ataaaaactt tttaaagttt tatcaatata tcttaaattt ccttgagaaa ttttttgtaa
    14941 aaacttaaga catttatttg aaaaattcat tccaaatttc aatttaatat aatcatcaag
    15001 ttctaaaaga ctaatatttt tcaatttaaa acaagcactt aaacgacttt taaaatgctc
    15061 ttttttaagt atatttaact ttttatgaga acttaaaaca aaacttatag aatcactata
    15121 aatcctgatg ctttctagca ttgcataatc atacattccc acttcatcaa gaatgattaa
    15181 actctgacct tgtgaaatca aaaactcaat tttttctttt aagaaactct gatctttaaa
    15241 attttcatta ataaaatcaa cattatattt ttttgccaat ctttgcaaca atacactttt
    15301 accactacca ctttttcccc ataaaaaaat aaaagctttt tggctttcta aaatttgatt
    15361 gatttgatga aaaatttctt ctctaaatgg aataatttta ctcataatgc ttaaatccta
    15421 gatctttaag acttggagca tttacgctat ctactatact tggagtgata ataaaaacga
    15481 tttcggttgc tttagaattt aaaacttctc ctttaaacaa agaacctagg attggaattt
    15541 ttgatagaaa attgatagaa tttttctcat tagatttatc gtgagaaatc aatccgccta
    15601 aaattaaagt ttgattattc tctacttgca caacactaga aagctttttt tgtatggtat
    15661 caggagcaat agttcttggt tctttttgtc gtttattatc ttctggatac ttaaaatcac
    15721 ttaagcttgg attaatccta agcattattt ttccatcatc agaaatttca ggcaagatat
    15781 tgagtaaaat gcctacaaaa atagaataat tattataact ttcactaaca gtagtcccat
    15841 tttcagtacc tttagaactt tctttaactt gataatttat agtatcgcct acagaaataa
    15901 tggcttgttg gttatttaaa gccataagct ttggattaga aagcacgcta gtttttccat
    15961 tttgagaaag aaagttaata atagaatcaa aatttaaatt cgcccttaaa cccaaattct
    16021 taacaaaacc ttgcccattt tgaaactgaa taaaagaatt ttcattattt acttgtgaat
    16081 ttaaacctat attaaaattt tgccaattaa tcccactaga atggctttca tttaaactca
    16141 cagcaagtat gctaacatcg ataataactt gttttttaag acgattttct agtttttgca
    16201 aataattttt cacacttttt aactgagaat ttgttccagt tactataata agacctgcat
    16261 tgggatttat aatgggagtt ttagcctcat aatcttcatg agaatttttt aataatacaa
    16321 taatctcttt ttctatattt tgccaaaaat caaatttttc catactttta atcatgttgt
    16381 cttctgcatc atcaaaacta ccgctatatt cactttgcct tggtttagcg tctacagacg
    16441 ctttagttat gctttgtcct tctctgatag aagtgatata acttatctta aaaatcttcg
    16501 tattaatgcc tgaaattctt aaaattttac catcaaaatc atagctaaga tcatgctctt
    16561 tgataaaaaa attaaaaatt tcgtccaaac tcatttgatg aatattgaca gagttttgca
    16621 atgtttctaa tttttctttg gcaattttat ctttaacaat aatactgaaa gaacaatatt
    16681 ttgcaagctc atcaagactt tcttgtatgc ttaatttttc gttaatactg atatcaaaaa
    16741 gacgcttttg acaatctaaa gcataaagat aa
//
LOCUS       DAPOLW010000019        16761 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.019, whole genome shotgun sequence.
ACCESSION   DAPOLW010000019 DAPOLW010000000
VERSION     DAPOLW010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16761)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16761)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16761
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.019"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..524
                     /locus_tag="ROE18_000461"
     CDS             <1..524
                     /locus_tag="ROE18_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HDX3650673.1"
                     /translation="IKKHMKNIRNLTNQTCQMGILKDGNVLYLEKIDANNTVQLKSFI
                     GTSYPAYATSLGKALLSNKNKKELEKLYPKNFDKITENTLNNINELYQQIKQIKKEKI
                     AIEIGEMNPQIECMAIGIEHKNKIIAAISISYLIYYSNKAFREKNKKILLEEKNKIEK
                     VLKIYFNDLDTLY"
     gene            complement(555..5108)
                     /gene="rpoC"
                     /locus_tag="ROE18_000462"
     CDS             complement(555..5108)
                     /gene="rpoC"
                     /locus_tag="ROE18_000462"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HDX3650674.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMGAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIVKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEGKNI
                     VANRRNAAVLLVEPKIKTPFKGVINIENIHEDVIVSIKDKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIIEVIKEGWNVPNRIPFASEILVEDGEPVVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYHLEPKTVIFVHDGDKIAQAD
                     ILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(5101..9237)
                     /gene="rpoB"
                     /locus_tag="ROE18_000463"
     CDS             complement(5101..9237)
                     /gene="rpoB"
                     /locus_tag="ROE18_000463"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HDX3650675.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTTSAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLVGLRLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLANEKEFIKSLSDEELLNYA
                     RDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(9346..9723)
                     /gene="rplL"
                     /locus_tag="ROE18_000464"
     CDS             complement(9346..9723)
                     /gene="rplL"
                     /locus_tag="ROE18_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HDX3650676.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMVAGGA
                     VAGGAVAAAEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(9744..10223)
                     /locus_tag="ROE18_000465"
     CDS             complement(9744..10223)
                     /locus_tag="ROE18_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HDX3650677.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLSVSKVAAKFEENNDKFE
                     IKTAHIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(10375..11076)
                     /locus_tag="ROE18_000466"
     CDS             complement(10375..11076)
                     /locus_tag="ROE18_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HDX3650678.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(11131..11556)
                     /gene="rplK"
                     /locus_tag="ROE18_000467"
     CDS             complement(11131..11556)
                     /gene="rplK"
                     /locus_tag="ROE18_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HDX3650679.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(11582..12115)
                     /gene="nusG"
                     /locus_tag="ROE18_000468"
     CDS             complement(11582..12115)
                     /gene="nusG"
                     /locus_tag="ROE18_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HDX3650680.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(12125..12304)
                     /gene="secE"
                     /locus_tag="ROE18_000469"
     CDS             complement(12125..12304)
                     /gene="secE"
                     /locus_tag="ROE18_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HDX3650681.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVAVISLFL
                     ALVDWLMSSIVSAIV"
     gene            complement(12323..12398)
                     /locus_tag="ROE18_000470"
     tRNA            complement(12323..12398)
                     /locus_tag="ROE18_000470"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(12363..12365),aa:Trp,seq:cca)
     gene            complement(12411..12569)
                     /gene="rpmG"
                     /locus_tag="ROE18_000471"
     CDS             complement(12411..12569)
                     /gene="rpmG"
                     /locus_tag="ROE18_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDX3650682.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(12622..13821)
                     /gene="tuf"
                     /locus_tag="ROE18_000472"
     CDS             complement(12622..13821)
                     /gene="tuf"
                     /locus_tag="ROE18_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HDX3650683.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(13890..13964)
                     /locus_tag="ROE18_000473"
     tRNA            complement(13890..13964)
                     /locus_tag="ROE18_000473"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13930..13932),aa:Thr,seq:ggt)
     gene            complement(14069..14145)
                     /locus_tag="ROE18_000474"
     tRNA            complement(14069..14145)
                     /locus_tag="ROE18_000474"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14109..14111),aa:Gly,seq:tcc)
     gene            complement(14152..14237)
                     /locus_tag="ROE18_000475"
     tRNA            complement(14152..14237)
                     /locus_tag="ROE18_000475"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14201..14203),aa:Tyr,seq:gta)
     gene            complement(14287..14362)
                     /locus_tag="ROE18_000476"
     tRNA            complement(14287..14362)
                     /locus_tag="ROE18_000476"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14327..14329),aa:Thr,seq:tgt)
     gene            complement(14454..15215)
                     /locus_tag="ROE18_000477"
     CDS             complement(14454..15215)
                     /locus_tag="ROE18_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDX3650684.1"
                     /translation="MSILKIENLQKYYGSHHALKDINLEVKAKEVVVILGPSGCGKST
                     LLRCINGLEEIASGNIYIDNEKIDKDFKEWPRMRQKVGMVFQSYELFEHLSVEENILL
                     GPMKVQKRKKDEVLKEAKIWLEKVGLLHKIHAYPRELSGGQKQRIAIVRSLCMNPELM
                     LFDEVTAALDPEIVREVLEVMLNLAKEGMTMLIVTHEMGFAKAVADKIIFMDEGKIIE
                     ENDPKSFFKNPKSERAKKFLNLFDYHNIDKNNIGL"
     gene            complement(15217..15873)
                     /locus_tag="ROE18_000478"
     CDS             complement(15217..15873)
                     /locus_tag="ROE18_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDX3650685.1"
                     /translation="MLELLNTDTLLRLWQGLFVTLEISFISIIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWLFVVYFGFPRWFGWDLSSVSAAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFAYVIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(15866..16567)
                     /locus_tag="ROE18_000479"
     CDS             complement(15866..16567)
                     /locus_tag="ROE18_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDX3650686.1"
                     /translation="MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYF
                     KIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFNIHLEQIPPLDLICLSVEETLRP
                     SFACAIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
                     SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILP
                     LSFILLKFEKRLLHA"
     gene            complement(16583..>16761)
                     /gene="nssR"
                     /locus_tag="ROE18_000480"
     CDS             complement(16583..>16761)
                     /gene="nssR"
                     /locus_tag="ROE18_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HDX3650687.1"
                     /translation="ENEKNLDTISQKQIAIDLNVRAQSLSRVLKELKISELIDTKKGR
                     IEILNKDMIMKELW"
BASE COUNT         5327 a         3388 c         2213 g         5833 t
ORIGIN      
        1 taatcaaaaa gcatatgaaa aatataagaa atttaaccaa tcaaacttgt caaatgggaa
       61 ttttaaaaga tggaaatgtg ctttatttag aaaaaattga tgccaataat acagtacaat
      121 taaaatcttt tataggcact tcgtatcctg cttatgcaac atctttaggc aaagccttac
      181 tatcaaataa aaataaaaag gaattagaaa aactttatcc taaaaatttt gataaaatta
      241 cagaaaacac cttaaataat ataaatgaac tctatcaaca aatcaagcaa attaaaaaag
      301 aaaaaattgc catagaaatt ggagaaatga atcctcaaat tgaatgtatg gctataggca
      361 tagaacataa aaataaaata attgctgcca ttagtatatc ttatctaatt tattactcta
      421 ataaagcttt tagagaaaaa aataaaaaaa tacttctaga agaaaaaaat aaaatagaaa
      481 aagttttaaa aatttatttt aatgatttag atacactgta ttaatatagc cccgaagggc
      541 tataaaatag agttttattc ttgttcttta agttttaaat tttgttcgcc ataaagccct
      601 gttccaacag gaatcattct acctagaata acattttctt ttaaatcttc taagtagtca
      661 aatttacctg ctatacttgc ttcagttaaa actttggtag tttcttggaa tgaagccgca
      721 gaaatcacac tatcacttcc aatcgctgct cttgttacac ctaaaagcac aggttcggca
      781 atagctggtt ctccacccat tctaatgatt ctttcatttt cttcacggaa tttacgtctt
      841 gaaaccaaat caccttcaat aaatttcgta tgtccactat ctacaacttt tacttgtctt
      901 agcatttgag aaacgataac ttctatatgt ttatcagaaa tcacaacacc ttgtccgcga
      961 taaacttgct gaatttcaga aatcaaataa taatgcaagg ctttttcacc taaaatttta
     1021 agcacatcat gactcgaaac aactccatct gtaagttttt cacctgcatg aataaactct
     1081 ccatctctta cttgaatatg ttttgattta tcaattaaat actcagcact tgttccatct
     1141 tctgcttgga taataattct ttctttagaa cgcaaaggct tatcaaaacg aacaacacca
     1201 tcaatttctg caatcacagc cgcatttttt ggttttcttg cttcaaaaag ttcagaaact
     1261 cttggaagac ctcctgtaat atcctttgat ttagctgctg cttttggagt ttttgctaaa
     1321 atatctgctt gagcaatttt atcgccatca tgaacaaaaa taacggtttt tggttcaagg
     1381 tgataacgca cagctttatc accttttcct gcaattacca aagttggtct aactccgcta
     1441 ggtaaatact cattaattac taaagaacgc ttacctgtag cttcatcaat ttgctcatca
     1501 gcactataac ctgcttcaat atcctcaaag cttacaacac catcaatttc tgcaatgata
     1561 gtattattat aagcatccca ttctgcaatc acttttcttt cttttttagg agcacttgca
     1621 atgatagtat ttgcgtcatc gattttttca ctatcgttaa attctatctt agattctctt
     1681 gggatatagt gtctttttgc ttctctatca ttttcatcag caatcactac aaagaatcct
     1741 ttttctttaa caatatcacc ttttttaaca ttttttactc tatctaaacc atcgccttta
     1801 aggatgtaaa atttgagtgt tcctttttcg cctgctttga tattttgaac tacaggctcg
     1861 ccatcttcta ctaaaatttc actcgcaaaa ggaatacgat ttggtacatt ccaaccctct
     1921 ttaatcactt ctatgatact ttcattttct tctacttgca tgccgctttg atatggcaaa
     1981 taaagttttc catctatact gccacttaca cctgctaatt catttggttt agcaagatcg
     2041 tattttctta atatatattt tacttcttgt tttttatctt taatagaaac aatcacatct
     2101 tcatgaatat tttctatatt aatcacacct ttaaatggag ttttgatttt tggctccaca
     2161 agtaaaaccg ccgcatttct acgatttgct acgatatttt taccttcttt gtttttataa
     2221 gttttaagat tataaaatct tataaaacct tctttttgtg cgcttacttg tctatcttgt
     2281 aaatccgtac ttgcagttcc cccgctatgg aaagttctta gagttagctg cgttcctggt
     2341 tcaccgatag attgagcgga aataattccc actgcttcgc ctggttttac taatttacct
     2401 tcaccaagat tgataccata acattttgca caaattcctt ttttagcttt gcaggtaata
     2461 ggagtgcgga tattgacact ttttataccg ctttcgccaa gaatttttgc tttttcctca
     2521 tccattaaag taccttccgc aaaaagcaca gaatttgtaa taggatcaat cacatcctca
     2581 gctaaaaccc tgcctaaaat tctttcttct aaagtttcta taatagaact atctgcggta
     2641 atttcattga tttcaacacc ctcatgtgtt ccacaatctt caatggtaat ttttacattt
     2701 tgtgcaacat cgatgagttt tcttgtcaaa taacccgcat ttgctgtttt aagagcggta
     2761 tctgcaagac cttttctagc accgtgagtt gaaataaagt attcaagaac atttagccct
     2821 tcacggaaat ttgaaataat aggcgtttcg ataatagaac catcaggttt ggtcataagt
     2881 cctctcatcg cagcaagctg agaaatttga gctgcactac ccctagcacc agaatctgcc
     2941 atcatataaa tagagttaaa accttcttta tctttttcta caagcttcat catttctttt
     3001 gaaagaacat tgtttgtact tttccaaata tcaatgattt tattgtatct ttcccctgaa
     3061 gtaatcaaac cgagattata agaattttga atttctctta cttgtttttt tgcttcatcg
     3121 atagcttttt gtttatcatt aggaacaata atatctgcaa tcgaaattga aatacctgct
     3181 ttagttgcat attcaaaacc taaattttta agtctatcta agaaacttgc tgtaatctct
     3241 aaaccacctt gtttataaac ataatctaca agcgcagcaa tgtctttttt ctttaagact
     3301 ttattccaac tattttcagg cacaaaatca ggcaagatgg atttaacaat caatcttcct
     3361 gctgtagtgg taatctttct accatctacc atagtttgta tgctcgcatg aatatccaaa
     3421 cacttgcttt caagtgccat catcacttca tcaatgcctg tacaaatttt atgcgaacct
     3481 ttagcacctg ctttttccaa cgaaagataa taaattccta aaaccatatc ttgcgatgga
     3541 acggttacag acttaccgct tgctggtaaa agaatattca ttgatgaaag cataagcact
     3601 ttacattctg caatagcctc ttgagaaagc ggtacatgca ctgccatttg atccccatca
     3661 aagtctgcgt taaatgctgc acaaaccaaa ggatgaagtt gtatagcctt accttccact
     3721 aaaacaggat gaaaagcttg gatagaaagc ttatgcaaag taggtgcacg gtttagcata
     3781 acaggatgtc cctttactac ctcttctaaa cattcccaaa cttcattggt tttattttct
     3841 atcatttttt tagcttgttt tactgtggtt gcataacctt tttcttcaag cttagctaaa
     3901 agatgtggct taaaaagctc taaagccatt tttttaggta aaccgcattg atccattcta
     3961 agttttggac ctacaacaat aacgctacga cctgagaaat ccaccctttt acctagtaga
     4021 ttttgtctaa aacgtccttg tttccctttg atgatttcac ttaaagattt caatgggcgt
     4081 ttatttgctc cttttacagc attagcacga cgaccgttgt caaaaagtgc atcaacagcc
     4141 tcttgaagca ttcttttttc atttctgata atgatttcag gtgcatcaag ttccataagt
     4201 tttttaagac gtgtatttct attgataaca cgacgatata agtcattcac atcagaaact
     4261 gcaaatttcc caccatctaa agccactaaa ggacgcaaat ctggcggtaa aactggaaga
     4321 tttgtaatca tcatccattc aggacgattt ggtacagctt cgtcgctatc ggtattggcg
     4381 tttaaatttg aatttaagaa attttctaca acttttaagc gtttaatgat agtttttttc
     4441 ttagcctctg aatttgtagc ccccatttct tctttaagct gatttaaaag cgctacaaga
     4501 tctaaatttg caagtaaatc acgaacaact tctccaccca ttcttgcttt aaagccgcta
     4561 ttttcatagc gttgcattaa attttgatat tgctcttcgt tcaaaacatc gcaatattcc
     4621 acttttttag tactttcatt atcatagaaa gcatcacctg ggttttcaac aatataagct
     4681 tcataataaa gcacgcgctc aagatctttc atcttaacac ccaaaagcgt tcctatacga
     4741 cttggaagag aattaacata ccaaatatga gccacaggag ttacaagctc gatatgcccc
     4801 attctagaac gacgcacttt tgaatttgct acttcaacac cacatttttc acacttaacg
     4861 cctttaaaac gcattttttt gtatttacca caaagacact cataatctct tataggtcca
     4921 aaaatctttg cacaaaaaag cccatctctt tcaggcttta aggttctata attaatagtt
     4981 tctggttttt ttacttctcc ataagaccat gatttgattt tttcaggact tgcaagtctt
     5041 agttgaaatg cttcaaaatc tctaggtctt gcatcttctt taatttctat tactttaaat
     5101 ttactcatta tcttcatcct tatcaaaaat ctcaacatct aaagcaagag atttaagctc
     5161 attggttaat acaaaaaatg tttcaggaat tcctgttgct ggaacatttt caccttttgt
     5221 caatgcttta taggcactaa atctaccttc tacatcatct gattttatgg ttaacatttc
     5281 tcttaaagtg tgagctgctc cataagcttc aagtgcccaa acttccattt ctccaaatct
     5341 ttgtccccca aagagtgctt taccacccac aggttgttgg gtaaccaagc tataaggtcc
     5401 tgtacttctt gcatgaactt tttcatcaac caagtgatgg agttttagca tatacataca
     5461 tcctacatga acacgctctg caattttttc ccctgttcgt ccatcgtaaa gttctgtttt
     5521 gccatccata tctatcttag ccattttaaa aagcttgcta aattcttcta tatttacacc
     5581 ttcaaaaaca ggagtagaaa atttaactcc tttactccag tctctagcat agtttaaaag
     5641 ctcttcatcg cttaagcttt taataaattc tttttcgttt gcaagtcttg gaatagaaca
     5701 aatttcaagc attttcgctc ttaactcttt aagaaaatct ttttgctttc tatcaaaaat
     5761 ttcttgaatt tgatccccaa gtctaagtcc aactaaacct aaatgacttt ctaaaatttg
     5821 acctatattc atacgacttg gaacgccaag tggattaagc gcaatatcca cactcttacc
     5881 atttggcaaa taaggcatat ctacttcagg aactatagtt gaaactatac ctttatttcc
     5941 atgacgtcct gccattttat caccgacttt aagctttctt tttgtagcaa tataaacttt
     6001 aacaagctta attaccccac ttggtaaaat atcatctttt tctaaaattt caagcttttc
     6061 atcgtgttct gcttttaatt ttttcttctc attttggaaa tgatttttta aatcatcgta
     6121 ttctttttga atctctttag aataagcttt aatcaaagtt gttaaagtaa aacgattgat
     6181 tttttcaagt tcgctaatat ctgcagtttg tcctttttta taatttttat ctccaatttt
     6241 ttgatcgcta tttaaagggg ctttggaaag aagagcacaa acacgaagca tttcttctct
     6301 atccatcatc aaaagtctat catgatgctc tttttctaaa gccatttttt ctttatcata
     6361 agattttatt gcgcgatcat ctttttcata gcctttttta gtgaaaattt taacatccac
     6421 aacaacaccc tctaaagaag cggttgcata aagggattta ttcacaacat gtcctgcttt
     6481 ttctccaaaa atcgctctta aaagtctttc ttcaggagtt ggtttaacct caccttttgg
     6541 agaaacctta cccaccaaaa tcatacctgg tttaatatgg gtaccaattt ttgcaatacc
     6601 gctctcatca agatgtgcaa catcttcttc ttttacattt ggaatatctt tggtaatttc
     6661 ttctataccg tcttttagtt ctcttgcttc aatttctttt tcataaatgt gcacgcttgt
     6721 aaaagtatct tcacgaataa ttctctcact tacaactata gcatcctcat agttataacc
     6781 attccaaggc ataaaagcga ttaaagcatt tttacctata gcaagttcgc cttgatccat
     6841 agaaggacca tctgcgataa tttgtcctgc ttttacgata tcaccttttt taacaatagg
     6901 gtgttgaata taatttgtat tttgattggt tcttaaattt ttctccatag tgtaatggtc
     6961 aataaatgga cctttatcat cttcacctaa aatgaaaatg cttttattat ccactttctc
     7021 aaccacaccg ccacgctttg ctttaacagc ttcccaagca tcacgcgcaa taatttgttc
     7081 catacctgtt cctactatcg gagctgaagt agtaagaagt ggcacagctt gacgttgcat
     7141 gtttgaaccc attagcgctc tgtttgcatc atcgtgctct aaaaacggaa tcaaagaagc
     7201 tgcaactcca acaaccatac ctgagcaaag atcgattaat tgcacttctt cgcgtcttgc
     7261 aagtatagtt tcaccatctt gcctagcctc aacaaattct tctactatat tgcctttagc
     7321 atcaacctta gttgaagctg gtgcgataaa caagccttct tcttgtgtcg ctgtaagata
     7381 aacaacttca ttagtcactt taccatttac aacttttcta tatggcgctt caacaaagcc
     7441 aagttcattt acttttgcat aagtagaaag agtgttaatc aaaccaatat tttgaccttc
     7501 aggtgtttca actggacaaa ttctaccata atgtgtcgcg tgaacatcac gcacttcaaa
     7561 acctgctctt tcttttacaa gtccaccttc accaagcgct gacaaacgac gcttatgagt
     7621 aacctcgctt aaagggttgg tttgatccat aaattgcgaa agctgacctc ctgtaaaaaa
     7681 ttcaatgata gttgtagtaa tcattttagg attgattaaa tcataaggca ttactttatc
     7741 aagatccgca tttaaagaag taaatttatc tctgatcgcc ttttgcattt ttgcaagacc
     7801 taaatgaagt tcattggcta aaagttcacc tatagaacgg atacgacgat ttcctaaatg
     7861 atctctatca tcaatatgtc ctttaccatt ttttacttta attaaatatt ttgcagtttt
     7921 aataatatct tcattagtca aaacagtaac atactcaggt acttcaagac ctaatttatg
     7981 gttcattttc atacgaccta ccttggtaag atcgtatctt tcaggattga agaataaatc
     8041 atttacaaaa gccttcgctg catcttttac cacaggttca cctgggcgca taactttgta
     8101 aattctaatc gcagctaaat cattttcatc atcgatattt tcactttgtt taagaagttt
     8161 tagagtttct ccatcttggg caaaggagtt aataatcgct gcatcaacgc cattagccaa
     8221 gtcatttgct atatcaaaac ttttttgctc tttaatctta gcaagcttac tctcatctaa
     8281 caaagttaaa gaatcaaata aaacctctcc actttcttta tcaataatag gatttgctaa
     8341 ataacgatta agtaaaattt ctacaggata ttctatccat tttaaaccgt ctttaataag
     8401 ctgttctgct tttttctttg taagtctttt tccagcttga tgaacgattt ttcctttttc
     8461 atctttaata tcatattcta ttctatccat aaaatcattt ggattaaatt ctgttaaaaa
     8521 tttatctttt ttcacatgta tagtctgaat aggataaaac aacttaataa tatcttgttt
     8581 tttataccct aaagctctaa aaagcatagt tacaggaact tttctacgct tattgattct
     8641 tacatacaaa acatctttgg catcgtattc aaaataaagc cacgaaccac gatcaggaat
     8701 aatttgtgct gtataaacaa gcttatttgc aaccgttgaa ctttcttctt ctttaaaaat
     8761 aacaccaggg cttctatgta attgatttac aaccactctc tcaaccccgt taatgataaa
     8821 agatacacga tctgtcatta aaggaatttc gcggatataa atttcttgtt ctttaatatc
     8881 ttttacgcca actttttccc ctgttttttc atctttttca tgcagagtaa gacggatttt
     8941 catttttaaa tttacagaat aagtcaaacc tctttccatg cattcgcgaa tggtatattt
     9001 tggcttgcct atttcactac taacatattc aagactcaat ctattttgcg gatcatgaat
     9061 aggaaaaatt gatttaaaaa ctttttctat accactttca ccattatcaa gatttaaaaa
     9121 ataatcaaaa ctcttttttt gtaattgtag aagatttggg atttctattt gttttgaaat
     9181 gtttgagaag tctactctta aacgatttcc taatttatta tctaacatat cgcacatacc
     9241 tcatggtaaa ttttgtaaat ttaaaaaaga agacctaaaa attaggtaaa aataaaaaaa
     9301 gaagacttgc cttggcaaat cttcttctaa ctttaaagct taaaattact taagttctac
     9361 tttagcacca gcttcttcaa gttgtttttt agcttcctca gcttcagctt tagccacacc
     9421 ctcttttaga gttgaaggag tttgctcaac tgcatctttt gcttctttaa gaccaaggcc
     9481 tgtaagagca cgaacgattt taataacttc aatcttttta gcaccgccat cagttaaaac
     9541 gatatcaaat tcagtttttt cttcagcagc agctacagca ccaccagcta cagcaccacc
     9601 agctaccatt acaggagcag cagacacacc aaatttttct tcaaattcct ttacaagttc
     9661 tgataactca agaacactta aatttgaaat atattctaat acatcttctt tagagattgc
     9721 cattttttat ccttttattt aatttattca gattcttttt tatttttaag cgcatttaaa
     9781 cctattgtga aattggtaat tggcgcattc caaacttgca aaagcatagc aagcaactca
     9841 ttgcgtgaag gcattttagc aagagcttta accttagcaa catctgcaac ttcgccttca
     9901 atatgagctg ttttgatttc aaatttatcg ttattttctt caaatttagc agctactttt
     9961 gaaacactta gctgatcttc gccccaaaga taaatatttg tatctttaag aactagacct
    10021 gttttaccgg aattgttaag agcaatgtta gccaaagtat ttttaacaat ttgaactttt
    10081 acattgtttt ctcttgcatt atttctaagc tcttctagtt tttttgtgct aagacctctg
    10141 taattacaaa ctacaatagc ttcactagct ttaaaacctt cttcaagttt agcaataatc
    10201 tcaacttttt cgcttctagt cacattttct cctttccgat tgagatttca agtagagtgg
    10261 aaatccaatt aagcttacgc ctcgactatc ttcaatctaa aataaacatt tcaaaaaatc
    10321 aaaaattttt tcaaatgttt attttaaaac aaaagagttg caaaaaagca actcttattt
    10381 catatcaagc aattcttgtg tttcaagctt tacagaaggg ctcattgtca aagataaagc
    10441 cgcattttta atatatctac ctttagctgc agcaggttta tgtttgttaa ttgcctttac
    10501 aaaagtgcta acattatccc ataattgttc tttggaaaaa cttactttac caagacctgc
    10561 atggatattt ccttgcttat caacacggaa atttacctga ccactttttg cattattaac
    10621 tgcttgagca acatccatag tcactgttcc agttttagga tttggcatta aaccttttgg
    10681 ccctaaaatt ctaccaactt taccaacaag tcccattaaa tttggagtag caatcaaaac
    10741 atcaaaattc atattacctt tttgaatttc ttctactaaa tcatcgctac ccacaatatc
    10801 tgcaccagca tttttcgctt catcagcttt tgcgtctttt gcaattacag caacacgaac
    10861 ttttttaccc gttccagcag gtaaaacaac agatcctctt accatttgat ctgcatgtct
    10921 tggatcaaca ttaagtttta aagcaatttc tacagtctca tcaaatttag cagactttaa
    10981 agtctttatt gtatcaattg catcgcttaa agcatactct ttatttgaat caattttttg
    11041 tgataattct tttaatcttt ttgctatctt agccatttat tttctccgca ttttaaagtg
    11101 ctaccgcctt ttaccttggc ggtgaaagga ttaatctacg atttcaacac ccatagaacg
    11161 agctgaacct gcaataattt tagcagcttg atctctatct ttagtattta aatctgcaat
    11221 tttcttatct actatttcta aaacttgagc acgagttaac ttacccacct tatttttaag
    11281 tggattatcc gtacctttag aaattccagc tgcttttttg atcaaatccg tagctggcgg
    11341 ttgttttgta ataaaagtaa aacttttatc tgcataaaca gtgataacaa cagggatatt
    11401 aaaacctgcc atatcttttg ttctttcatt aaaagcctta caaaactcca taatattaac
    11461 accttgctga cccaaagcag gaccaacagg tggtgatggg tttgcttttg tggcagcaat
    11521 ttgcaattta atttcgccta cgactttttt agccataaca aatctcctta cttgatataa
    11581 attaaattat tttctcaact tgagaatata agatctccac tggagttgaa cgtccaaaaa
    11641 tagaaacatt taattttaat aaaccacgaa ccatatcata ctcttctaca attgcagtaa
    11701 agtttgcaaa tggcccttct gtgattctca cattttcccc ttcttcaaaa gaaatctttg
    11761 gtttaggcgc tgcacgattg tgaacttttt ccaaaatcaa attaatatct ttttctgtta
    11821 aaggggttgg ctttttggat tctccaataa aacgaccaac ctttggaaga gattgaatgc
    11881 gatgccaaag ctctgtattt aaatcaagaa gtgcaaaaac gtatcctgaa tacaaacttc
    11941 tttcgctaat cttctccttt ccattcttaa attcaataac atcttcagtt ggaacaacaa
    12001 tttctttaag ttgttcttca attccgttat cttttactaa attttcaatg gctcttttaa
    12061 ctgccatttc actgccagca taagtttgaa ttgcatacca tttatgagta ctcatttact
    12121 ctccttatac gatcgcagaa acaatagagg acataagcca atccactaac gccaaaaaca
    12181 aagaaatcac cgcaacaacc acaaaaactg taatataggc atttcttacc tgttctttta
    12241 aaggaaaaat tactttcctt aattcggctt ttgataattt aaaataagtt attaattttt
    12301 ccatttattt aaaccttaat tatggcaggg caagagggat tcgaaccccc aaccatcgga
    12361 tttggaatcc ggcgctctac cgttggagct attgccctaa gggcgcaagc ttaacttttt
    12421 agcttaactt ctttgtgaag tgtatgtttt tttaatcttg ggcaatattt ttttaattct
    12481 aatttttcag tagtattttt actattttta taggtgctat aattaatatc accacattct
    12541 tcacacttta aaccaacttt aattctcatt tcaattttcc ttaaaaaatt aaagccaagc
    12601 ttttaacttg gctttattaa attatttaat aattttagaa acaacacctg aaccaacagt
    12661 tttaccacct tcacgaatag caaaacgagt tccttcttca agtgctactg gagcgatcaa
    12721 gcttacagta attctcacat tttcacctgg cataaccatt tcaacaccat cagctaattt
    12781 aatcgaacct gtaacatcag ttgttcttac ataaaactgt ggtctatagt tgttaaagaa
    12841 tggagtatgt ctaccacctt catctttatt taagatataa acttcagctt cgaagtcagt
    12901 gtgtggagta attgattttg gtttagcaag aaccatacca cggataactt cttctttttt
    12961 agtaccacga agaagaacac ctacgttatc tcctgcttcg ccttgatcca tttcttttct
    13021 gaacatttca acacctgtta cagttgttgt ttgagtatct ttaataccaa cgatttcgat
    13081 agtatcacct acttttacaa cacctttttc aattctacct gtaacaacag taccacgacc
    13141 tgaaattgag aaaacatctt caattggcat caagaagtct ttttcagtat cacgagttgg
    13201 agttggaata tagctatcaa ctgcagccat aagatccata atttttgctg accattcacc
    13261 atcttgtcca gctttagctt cttcaagagc ttttaaagca gaaccagaaa taataggtgt
    13321 atcatcgcct gggaaatcat aagagcttaa taattctcta atttccattt caactaactc
    13381 taaaagttca gcatcatcaa ccatatctgc tttattcata aaaacaacaa tatatggaac
    13441 gcctacttga cgagaaagaa gaatgtgctc tctagtttgt ggcatagggc catctgcagc
    13501 agaaacaacc aagatcgctc catccatttg tgcagcacct gtaatcatgt ttttaacata
    13561 atctgcgtga cctgggcagt caacgtgtgc atagtgacga ttgtctgttt catattcaat
    13621 atgagaagta gcaatagtaa taccacgctc tttttcttct ggagcattat cgatattatc
    13681 ataatcttta agctctgcta aacctcttct agaaagaaca gcagaaatag cagctgttaa
    13741 agtagtttta ccatggtcaa catgaccaat agtaccaata tttacgtgtg gcttattacg
    13801 tgaaaatttt tctttagcca tttttttcct ccgtataaaa aataaattga gcaaagcaag
    13861 tcttatatct atataatttt ttcaattcat ggagctcata gcgggaattg aacccgcgac
    13921 ctctccctta ccaagggagt gctctacctc tgagccatac gagcgctcag aaaaattata
    13981 cacaataaca gacaacaaaa actcttaaat gggatatata ctgtaagtta aaggttttaa
    14041 aatacagctc ccagttcttt taaattattg gagcgggaaa cgggactcga acccgcgacc
    14101 ctcagcttgg aaggctgatg ctctagccaa ctgagctact cccgcaaagc atggtggtga
    14161 gtcgtggatt cgaaccacgg aaggcgaaag ccagcagatt tacagtctgc cctcgttggc
    14221 cacttgagta actcaccata aaaatattgc tttttcaata ttctggtcaa acactgctaa
    14281 aataaatgga gctggttaag ggacttgaac ccccgacctg ctgcttacaa ggcagctgct
    14341 ctaccaactg agctaaacca gcaaaaataa aagtaagatt ataactcaaa aaaaaaattt
    14401 tgtcaagact tttttagttt ttctataaaa ttttagtctt gtaaatttta ttatcataaa
    14461 ccaatattat ttttatctat attatgataa tcaaataaat ttaaaaattt ctttgctctt
    14521 tcgctttttg gatttttaaa aaaactttta ggatcatttt cttcgatgat ttttccttca
    14581 tccataaaaa taattttatc tgctacagct ttagcaaaac ccatttcatg agtaacaata
    14641 agcatagtca taccctcttt tgcaagattt aacatcactt ctaaaacttc tctgacaatc
    14701 tcaggatcca gcgctgctgt aacctcatca aaaagcatta actcaggatt catgcataaa
    14761 cttcttacta tggcaattct ttgcttttgt cctccgctaa gttctcttgg ataagcatga
    14821 attttatgca aaagccccac cttttcaagc caaattttag cctcttttaa aacctcatct
    14881 ttctttcttt tttgcacttt cataggccct agaagtatat tttcttcaac acttaaatgc
    14941 tcaaaaagct cataagattg aaaaaccata ccaacttttt gacgcattct tggccattct
    15001 ttaaaatctt tatctatttt ctcattatca atataaatat taccacttgc aatctcttca
    15061 agcccattaa tacaacgcaa aagcgtagat tttccacatc cgctaggacc taaaatcacc
    15121 acaacttctt tagccttaac ttctaaatta atatctttta aagcatgatg cgaaccataa
    15181 tacttttgta aattttctat ttttagtata ctcattttag ctccattttt tctctaattt
    15241 tcttgaatat aaagtgatag gataacaaag tataaaaaag ataaaaaaaa tcaaaccata
    15301 aataataaaa ggtgcaaaat catttctatt atgaaattct ataatttgtt gccctacttt
    15361 tacaagctct accgcgccga ttaaataagc aaaggttgta cttttaatca tacgagtaag
    15421 taaattcatg ctcataggag ttaaacgacg catagcttgt ggaataataa cataagcaaa
    15481 actttgcacc gtatttaaac ctaaagatga tgcactttca tactgatgtt ttggaatact
    15541 ctgcaaggaa acacgcacca aatccatcat ctcaaaacaa ccccaaatgc taaaaacaat
    15601 aatagctgca cttacagaac tcaaatccca cccaaaccat ctaggaaaac caaaatacac
    15661 cacaaaaagc catactaaaa gtggcataac acgcacaaat tctaaaccca aacgacaaaa
    15721 agcatagata taggtatttt taaaactcat taaaattcct aaaaataacc cacctatcga
    15781 agtaataata atgctgataa atgaaatttc aagagtgaca aaaagccctt gccagagtct
    15841 taaaagcgta tcggtattta aaagttcaag catgaagcaa ccttttttca aactttagca
    15901 aaataaaaga caaaggcaaa ataatgcata aatatcccat aaacaacaaa aacaatagct
    15961 catctgtctt ataggttaag gaatttaaac tcttcattaa attcaccaaa tctggcaagg
    16021 caataatact aacgactgaa gtttctttga ttaaaaatat aatattagca ctaatacttg
    16081 gcatagaaat agccaaagct tgcggcaaaa tcacataacg caaatttcca aattttgaaa
    16141 aacccaaaga aagtcccgct tcaaactgct gttttcttat ggcttcaaat cccgctctta
    16201 aactttcagc catataagaa cctcctaaaa aactaagtcc tactatagca caagcaaaag
    16261 aaggccttaa agtttcttct acgcttaagc aaatcaaatc aagcggtgga atttgctcta
    16321 aatgtatatt aaatttaggt aaagcataat ataagaaaaa aagttgaatt aataaaggcg
    16381 tatttcttga aaactctata taaagcttgc aaatattttc taaaattttt attttaaaat
    16441 aactcattaa aatacaaaac aaacctatta tcaaagaaaa aataattcca aaaaagctta
    16501 gttttatcgt aagccaagca gccgttaaaa aagcaggagc ttgagctaat ataaaatcaa
    16561 aatccattct ctaccttaaa ttttaccaaa gttctttcat gatcatatct ttatttaaaa
    16621 tttcaattct accttttttt gtatcaataa gttctgaaat tttaagttct tttaacactc
    16681 gagataaaga ttgcgctcta acatttaaat caattgcaat ttgtttttgt gaaattgtat
    16741 ctaaattttt ttcattttcc a
//
LOCUS       DAPOLW010000020        16466 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.020, whole genome shotgun sequence.
ACCESSION   DAPOLW010000020 DAPOLW010000000
VERSION     DAPOLW010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16466
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.020"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..282
                     /locus_tag="ROE18_000481"
     CDS             <1..282
                     /locus_tag="ROE18_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HDX3650688.1"
                     /translation="LDNQIITNTICYEATKEQNYQNSQIIIALSNNAWFNNSSEYKLQ
                     QLLMKFYASKYGVSVYHATNGKENIVILPKKLLSKDWKNLSKEIFNDKK"
     gene            complement(519..1715)
                     /locus_tag="ROE18_000482"
     CDS             complement(519..1715)
                     /locus_tag="ROE18_000482"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HDX3650689.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     ASNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
     gene            1855..3078
                     /gene="sstT"
                     /locus_tag="ROE18_000483"
     CDS             1855..3078
                     /gene="sstT"
                     /locus_tag="ROE18_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HDX3650690.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIVLGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFLASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSEIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFIVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVATMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYGISIPLGATINMAGAAVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            3089..3976
                     /locus_tag="ROE18_000484"
     CDS             3089..3976
                     /locus_tag="ROE18_000484"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HDX3650691.1"
                     /translation="MRHLITTKDFSKSEIMELFKEASDFLDEKPRTFLEGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVSRSSSSKGEALYDTAANLDAMSPNAIVVRHAN
                     SGVPLILAKHIHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGDVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSDERTLVLKQVK
                     NGVAIRMAVLKKLILENEG"
     gene            3980..5701
                     /locus_tag="ROE18_000485"
     CDS             3980..5701
                     /locus_tag="ROE18_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HDX3650692.1"
                     /translation="MLEWDLSALFHDKEALQNFTQDQIQQSLNFKKNYENKLYTLDAN
                     EFLQALKDYENLNQALGKIMTYAYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELAPEKSQEFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEILSKMYDEDRKIRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERKNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYDIAKNAFDQGWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNYTNKRRDLFTLAHELGHTIHQKLSYHVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     PSTEEINKIWMEESQKMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVAMFGFDIEDENFWEIGIKEIQKLINE
                     FMELQSC"
     gene            5695..6132
                     /locus_tag="ROE18_000486"
     CDS             5695..6132
                     /locus_tag="ROE18_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650693.1"
                     /translation="MLETILKNENFIHTMQKHCYEVISHLIEENIEFSIVANTNFIDF
                     DPELPKELDVKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQIENSILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            6129..8204
                     /locus_tag="ROE18_000487"
     CDS             6129..8204
                     /locus_tag="ROE18_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HDX3650694.1"
                     /translation="MNLFEDLNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAASVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIKYISYCKNEGKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSEVEAKEIAVLFRVNALSRAIEEAFMKEKISYKLLSGMRFYERLEIKD
                     LISYLRLILNPNDDLSFRRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLREKLKEDPEASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVAITRAKKFLTISVANSRFYHGSRANINPSRFLE
                     ESKLINEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            8201..9019
                     /gene="truB"
                     /locus_tag="ROE18_000488"
     CDS             8201..9019
                     /gene="truB"
                     /locus_tag="ROE18_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HDX3650695.1"
                     /translation="MNKIFAAFKPRGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIKNIKEFDLANLQQII
                     DQMQGIISYTPPQFSAKRINGTRAYELAKKGIEANLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYIDLKPNF
                     IKKLNKLENGAKIFVEELEFHDEGDYYIETEKYFSIINIKENTVKYLLNKVEKC"
     gene            9013..9240
                     /gene="csrA"
                     /locus_tag="ROE18_000489"
     CDS             9013..9240
                     /gene="csrA"
                     /locus_tag="ROE18_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HDX3650696.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
     gene            9237..10004
                     /locus_tag="ROE18_000490"
     CDS             9237..10004
                     /locus_tag="ROE18_000490"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HDX3650697.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDVFDELELVDKE
                     SDSKKEFEIISNFKCENNIIQKAYLLLSKRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLMNETLNLKLNLQELINLSIQLGSDIAFFLSGFHSANVSGCGEIIEEF
                     EDDIPNLKWTFPQISCQTKAVYDEFDRGIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDR"
     gene            10001..10453
                     /gene="smpB"
                     /locus_tag="ROE18_000491"
     CDS             10001..10453
                     /gene="smpB"
                     /locus_tag="ROE18_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HDX3650698.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGKNLHDKRETLKKKQADLEARAAMKNYK"
     gene            10464..11066
                     /locus_tag="ROE18_000492"
     CDS             10464..11066
                     /locus_tag="ROE18_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HDX3650699.1"
                     /translation="MKKISALFLISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFAGDYGAYYFLSNGSSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNTPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            11066..11356
                     /locus_tag="ROE18_000493"
     CDS             11066..11356
                     /locus_tag="ROE18_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HDX3650700.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVMDAAKLANFPLQAKVEEE"
     gene            11353..13482
                     /locus_tag="ROE18_000494"
     CDS             11353..13482
                     /locus_tag="ROE18_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDX3650701.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSTDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIQDSRSYSSYLLKKHNINLNKIQELQNHENIQNLNNHTSDLTLLAQNGKIDPL
                     IGRKFELERMMQILSRRKKNNPILVGEAGVGKTAIVEGLALAIAEKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILSELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDSAIDLIDELGASFALNPRAKKNAN
                     LKDLENVLAKMTHHHKMFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTELCKALAEFLGLNLERFDMSEYAEKHAISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTIIIMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLNDAIL
                     VKIIEKELDEISKNLNNIKLSVDDKAKIYLAKKAYNKEFGVRLLKRIISEEIGEKISD
                     EILFGKLKKGGIAKIKLGKNEKLEFIF"
     gene            13457..14104
                     /locus_tag="ROE18_000495"
     CDS             13457..14104
                     /locus_tag="ROE18_000495"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HDX3650702.1"
                     /translation="MKSSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKVAMIKL
                     CDLLKPYDFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(14126..15415)
                     /gene="cetZ"
                     /locus_tag="ROE18_000496"
     CDS             complement(14126..15415)
                     /gene="cetZ"
                     /locus_tag="ROE18_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
                     /protein_id="HDX3650703.1"
                     /translation="MFGAKKNNTKIIEQLEKKCNGLGDILRSIGNTMAVIEFTTDGVI
                     LEANQNFLTTMKYSLSEIKGKHHSMFCLPEVVNSSAYSDFWKDLRDGKARSGLFRRIA
                     KGGIDVYLEANYLPISDNNGYVYKIIKFANDITQRHYEMLDLRNTIAAANRSMAIIEF
                     KPDGTIITANENFLRAMDFNIDEIKGKHHSMFCDSNYRHSKDYVQFWEDLREGKFQSG
                     KYIRYGRNNKKVYLEASYNPVKNDDGKIYKVIKFATDISEQVKKDQEKLRLISELAEK
                     NDNLTQDGDRVIENTVSNVQNIADMMSQSSNLVSSLNQQSDEIKSIIQTISDIADQTN
                     LLALNAAIEAARAGEHGRGFAVVADEVRNLAERTGHSVNEITTTINSIRNVTSQVVES
                     IKSGLEDVNQSVELAKEARECMEKIRESSAEVAKAMS"
     gene            complement(15496..16122)
                     /locus_tag="ROE18_000497"
     CDS             complement(15496..16122)
                     /locus_tag="ROE18_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HDX3650704.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLF
                     RTILYTAFTIVLVFLLSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDGGLDVALGGVMIAFIFM
                     FILFHFAATIEKIVGKLILHVFSRIAQVFIVAMGFKMIIVGLKDIFNL"
     gene            complement(16137..>16466)
                     /locus_tag="ROE18_000498"
     CDS             complement(16137..>16466)
                     /locus_tag="ROE18_000498"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HDX3650705.1"
                     /translation="VILNKGTEAPFSGKYNDFYEKGIYQCKQCGASLYKSEDKFKSGC
                     GWPSFDDEIKGAIKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKNVRHCVNSISL
                     EFVKTKD"
BASE COUNT         6185 a         2505 c         2419 g         5357 t
ORIGIN      
        1 ttagataatc aaattatcac aaatacaatt tgttatgaag ctaccaaaga acaaaactat
       61 caaaattcac aaattattat agccctaagc aacaatgctt ggtttaataa tagcagcgaa
      121 tacaaactcc agcaactctt aatgaaattt tatgcaagta aatatggggt tagtgtttat
      181 catgctacaa atggcaaaga gaatatagtt atactcccta aaaagctttt aagtaaagat
      241 tggaaaaatt tatccaaaga aatatttaat gataaaaaat aatattaaaa ttttaatttt
      301 aaagtaattt aagttatttt atattataat tctgtcaaac aatattttga cttagagggg
      361 tttttacccc aaagctaaat taatttagct tccttcctaa cttttatatt tatgggggat
      421 attgaaaaat atccctctaa gtcaaaaatt aatataacct cattaattct ttataattat
      481 acaagcctta tttaagcttg tataatattg ttaatttttt aaagtagctt tttaaactgt
      541 tctagagcat caagtttttc ccaaggatag tccttttgtc ctacttgccc acgagctgct
      601 acatccgcat aaagaaaagt ttctttactt ggtttatcca gatgaaattt atcacgaatc
      661 caatttggtg ttaaagagaa attttgcata acaaaatcac ttaaaacatc gtcatttaca
      721 ctagtatttg tgcccataca atctacgctt accgaagtag gttttgcaac acctatagca
      781 tagctaagtt gaacaataca ttttttagca agccctgctg caactatgtt tttagctagc
      841 catctacctg cataaagtcc acttctatca accttagtat aatctttgct cgattgtgcg
      901 ccaccaccta ttggagaata acctccaaaa ctatctacta taagctttct tcctgttaaa
      961 ccactatcat gcaaagaaga atgattaaca tatttaccgg ttggattaat taaaattcta
     1021 gttttattag gatcaaaaag ttcttttggt aaattactag ctaagataag tttcatcacc
     1081 aaagatctta aatcttctat tttcatactt tcaacacaag gtgcagaaac tactatagta
     1141 tggatacttt gcggtttgca attttcaaaa tttgccttag taccataatc aatagttact
     1201 tgagttttaa tatctactcc aagttcatgt ggatttgctt ttgcataagc ataaactcta
     1261 tcgcatagca ttcttgcata actaatagct gctggcatgt attcttcagc ttcgcaactt
     1321 gcaaaaccaa acataatacc ttgatcacct gctcctgttt cgccatcttc ttgatcgaca
     1381 ccttgattga tatcagggct ttgttcattt aaaaacacca taacatcaac ttcatcagga
     1441 tgcaaacact gctctttact aaaatgccct gctccgtcat aaccaatgtt ttttaaaaca
     1501 tctttaacta aattatcgta atcagcttta ctaagcttgt gatttgactt aacttcgcct
     1561 cctatcacaa ccttatttcc tgcgacaaaa acctcactcg ccacccttga atttttgtca
     1621 tttttcaaga gtatatccac tatcgtatca gcgattatat cagcgcactt gtctggatga
     1681 cctgcactta cgacttctga agtgaataga tacataaaaa gtcctttcat ttaaaatgaa
     1741 ccacaattgt atccaaataa acttatcaaa gcttgataaa ttaaaaattt actaaaatta
     1801 agcaaaagtt agttaaaatc aacttctgat ataaaaaata tttaaaaggt ttttatgttt
     1861 tctaaaatca ttcaaagcta cgctaaaggc aacctcatag ttcaaatttg tataggtata
     1921 gtactaggaa tactcatagg cattagttct aaagaaatat ctgaaattgc aaatttactc
     1981 ggaatacttt ttacaagtgc cttaaaagct atcgctccta tgcttgtttt tattttaatt
     2041 ttaacctcaa tttgcactaa agatttttct caaagtggtg ctaagatcaa aaatattatt
     2101 attttgtata tagtaggcac ctttcttgct tcagcttgtg cggttcttgc taattttttc
     2161 ttccctgtaa agcttgtttt agatggagtt caaaccgcta caaactcatc tccaacccac
     2221 atgagtgaga ttttcaaaga tcttttattt aaaattgtcg ataatcctat aaatgctctt
     2281 tcaagtggaa attatttagg aattttaact tgggcaatag ctggaggtat agcattaaaa
     2341 cactgttcta acgaagcaaa acaagttttt atagatatca atgaaggggt tttaaaaatt
     2401 gttaaattta tagtaaaact tgctcctttt ggaatttttg gacttgtggc taattctgta
     2461 gcacaaacag gagcgcaagg tttactaagc tatgtaaaac tcttaatttt acttgtagct
     2521 actatgcttt ttgttacttt tgttatcaat gccttaatag tcttttttta tacaagaaaa
     2581 aatccttttc ctttgatttt tatctgctta aggcacagtg cattttttgc tttttttaca
     2641 agaagttcag cagcaaatat tcctgtaaat atggcacttt gtgccaaact tggcatagat
     2701 aaagaatttt atggcatttc tataccttta ggagctacta tcaacatggc aggagcggca
     2761 gttactatag ccattttaag tcttactgca gccaataccg ttggtataga aatcagtctt
     2821 ttacaagcct ttttattaag cattattgct acctttgcag cttgcggggc tagcggggtt
     2881 gcgggcggat ctttactgct tatacctttg gcttgttctt tatttaatat agactatgat
     2941 attgctatga aggtagttgc cataggtttt attatagggg ttattcaaga tagtgttgaa
     3001 actgctttaa atagttctac agatgttctt tttacagcaa tttgttccaa aaatgaatta
     3061 aattacaata tcaaataagg caaaaaacat gcgtcatctc atcactacaa aggattttag
     3121 caaaagtgaa attatggagc tttttaaaga agcaagtgat ttcttagatg aaaagcctag
     3181 aacttttctt gaaggaaaaa gtatcacgac aatttttttt gaaaattcta cacgcaccct
     3241 ttcatctttt gaaagtgctg caagaagatt aggcgctagg gttttacgcc ttgatgtttc
     3301 aagatcaagc tctagcaaag gagaagctct ttatgatact gctgctaatt tagatgccat
     3361 gagtcctaat gctattgttg taagacacgc aaactcagga gttcccttga tattagcaaa
     3421 gcatatacat tgtccagttg ttaatggagg agatggaaaa cacgcccatc ctactcaagc
     3481 tttgctagat ttatttacta tttataatca ttttcaaggt gatgtcgaag gtaaaaaaat
     3541 ttgcatcgta ggtgatatta aaaactctcg tgtagcagcg tctaatatag aacttttaag
     3601 cagatttaat cttgatatta ccctagtagc tccaccgcat tttatgccta atacccatct
     3661 taaaaaacat tataagcttg atgagaatat catagcaaat tcagatatta tcatgagtct
     3721 tagaacacaa acagaaagac ataataaaac cgtttacgct tcacttaaag actatgcaaa
     3781 tgatttttgt attcaaaaaa gcttagtaaa agataaaaag cttattttac tacatccagg
     3841 ccctgtaaat cgcaatattg acataagcga tgaaatgatg agcgatgaaa gaactttagt
     3901 tttaaaacaa gttaaaaatg gagtggccat tagaatggct gttcttaaaa aactcatatt
     3961 agaaaatgaa ggataaaaaa tgttagaatg ggatttaagt gctttatttc acgataaaga
     4021 agcattacaa aattttacac aagatcaaat ccaacaaagt ttaaatttca aaaaaaacta
     4081 tgaaaataaa ctttatacat tggatgctaa tgagttttta caagctttaa aagattatga
     4141 aaatttaaat caagcccttg gcaaaatcat gacttatgct tatttacttt ttgctaaaaa
     4201 cactcaaaat ggttcttttt atgcacaata cgaagaagaa tgcaaaaaaa tagaagaaaa
     4261 tttactcttt ttcgagcttg aattttgcga gttagctcct gaaaaaagtc aagaatttac
     4321 aactttttgc aaagattatg atttttatct ttctaattta ttgcaaaaca aacgctataa
     4381 tcttagcaaa aacgaagaac gcattatgct ctatctttca aatacaggtg caaatgcttt
     4441 tagtagactt tttgatgaaa gtatgagcgc tttaaaaatc ccttttgaag gtaaaaaact
     4501 tagcgaagaa gaaattctaa gcaaaatgta tgatgaagat agaaagatac gcaaaaaagc
     4561 tgctaaaaaa ttcagtaaag ttttacaaaa aaatagcaga cttttaagtt ttattatcaa
     4621 tatgataaaa acagaaagaa aaaatataag cttattaaga ggttatgaaa atgctgaaat
     4681 ttcaagacat atcagcaatc aaatttcaca aaaaagcgtt gattctttga tagcaagtgc
     4741 gcaaaaacat tttaacttag tatcgcaatt ttacaaaaga aaaaaacaaa ttttaggcta
     4801 tgatgagctt aaagactatg acagatatgc acccatagga aaagaagcaa gttttgattt
     4861 taaaacaagt aaaaatattg ttttagaggc atttcaagct ttttctcctc aattttatga
     4921 tatagcaaaa aatgcttttg atcaaggctg gattgatgtt tatccgcaag aaaataaaca
     4981 agggggtgct ttttcacatt ctgcaacttc tgatgcacat ccttttgttt tattaaacta
     5041 caccaataaa agacgcgatc tttttacact tgcacatgaa ttaggacaca ccatccatca
     5101 aaaactttct tatcatgtaa gctatttaaa tcaaaatacg cctttaacca ccgcagaaac
     5161 agcttcagtt tttgctgaaa tgctggtatt tgattttatt aaagataagc taaaaaaaga
     5221 agaactccta tctttatatg caaataaaat cgaagatatt tttgcaactt tttatagaca
     5281 aattaatttt acttgttttg aaagacgctt gcatgcccaa gaaaatgaac ctagcactga
     5341 agaaatcaat aaaatttgga tggaagaatc tcaaaagatg tttcaagaca gcgtaaaact
     5401 cacaaaaaat tatgcttctt ggtggagtta tattcctcat tttatccatt ctccttttta
     5461 ctgttatgct tatgcctatg cacaactttt agttttagct ctttatggac tttacaaaag
     5521 taaaaaatgt gaaaatttta aagaacttta tatcaaaatg ctttctttag gtggaagtgt
     5581 gagtccaaaa gaactagtag caatgtttgg atttgatata gaagatgaaa atttttggga
     5641 aataggcata aaagaaattc aaaaacttat caatgaattt atggagttgc aatcatgcta
     5701 gaaacaatct taaaaaatga aaattttatc cataccatgc aaaagcattg ttatgaagtt
     5761 atttcacacc ttatagaaga aaacatagaa ttttctatag ttgcaaatac aaatttcata
     5821 gattttgacc ctgaacttcc caaagagctt gatgttaaac aaaatcctta tgctcttttt
     5881 gcccttggag gttacacctt tgaatccata caactaaata aagatttcat tcaatttcac
     5941 gcaggttttg gaaatgatga ttttgatagt tttgtaaagg ttgatttagg agctatcacg
     6001 caaattcaaa tagaaaatag cattttattt gttaatttta gcctttataa acgcgaagat
     6061 agtaaaaatt tacaaaaatc taaaaatata tttttaaata atccaaaaaa taaagatatt
     6121 ttcaaaaaat gaatctattt gaagatttaa atgatagtca aaaacaagcg gtaagccaca
     6181 ttgatggagc tatgcttatc ctagcgggtg caggtagtgg aaaaaccaaa actatcacca
     6241 ctcgtcttgc ttatcttatc ggtgaagtag gcatcccctc gcataacact cttactctta
     6301 cttttacaaa taaagcagct agtgttatgc gtcatagagc attaaatttt ctacaaggca
     6361 atcacaatcc tttgctttgc acctttcata aatttggact tttattttta aaactccatt
     6421 ttgaaagatt ggagcgtaaa aatagtttta ttgttatcga tacagatgat acaaaaaaaa
     6481 taattaaaga cttaatccat gataaaaaca aagataatgt ctatgatatt atcaaataca
     6541 tatcttattg caaaaatgaa ggcaaaagag taagcaatgt ctttgaagat ttaaatttac
     6601 taaaagaaca taattttgaa aaatatcaaa atgaatacaa atttgccaac tattaccgtg
     6661 cttatgaaga atacttatta aagcaaaatt ttgtagattt tgatgatctt ttattgctaa
     6721 gcaatctcat tttagaaaat gatataaatt ttgccaaaga acaaagctta ctttataatt
     6781 acattacagt tgatgagtat caagatacta ataccttgca atataaaatt ctaaaaaatc
     6841 tatgttgtat gcatgaaaat atcacagttg ttggtgatga tgatcaaagt atttatagtt
     6901 ggcgtggagc aaaaattgaa aatattttaa attttcaaaa cgattttaaa aatgttaaac
     6961 ttgtaaaact tgaacaaaac tatcgttcag tagggactat tttacaagca gcaaataatc
     7021 tcatatctca caatgagcaa cgacttggaa aaactttaat ctgcactaaa gatactgggg
     7081 aaaatattaa aatattaaaa aacgaaaacg aaaaagatga aggtttatat atcgctcaag
     7141 aagtgaaaaa attgctaaat tctgaagtag aagctaaaga gatcgccgtt ttatttcgag
     7201 ttaatgcact atcaagagca atagaagaag catttatgaa ggaaaaaatt tcttataaac
     7261 tgcttagcgg tatgcgtttt tatgaaagat tagaaataaa agatttaatc tcgtatctta
     7321 gacttatctt aaatccaaac gatgatttgt catttaggcg tattataaat cgccctaaaa
     7381 gatccatagg agaaaaagcc ctaaaaaatt tagaagaata tgcaaaaaaa cgtcaaattt
     7441 cactttttga tgccttatgt gaaagcgatg gcggtgtagg aattttaaca acaaaaaaag
     7501 cacaaaatga agcaaatatt tttatacaaa atattcacac tctaaaaagc tacgataatg
     7561 caaaaaaggt ttttgacaat atagaagaat tatttaaaat caaagattat ttttcagagc
     7621 aagatgatgg agatgaaaga atcagaaatc ttgatgagtt ttatgccaat ctaagagaaa
     7681 aactcaaaga agatcccgaa gcttctttag aagatctact tagtgaaatt tctttattaa
     7741 gtgatcaaga taatttagat gaagaatgtg tttgcttgat gagtattcat gctagcaaag
     7801 gtttggaatt tgattatgtt tttataatag gctttgatga aggatttttt cctttaaata
     7861 gcgaagaaaa tctcgaagaa gaacgccgtc ttgcttatgt tgccatcact cgcgccaaga
     7921 aatttctcac aataagtgtt gcaaattctc gtttttatca tggttcaaga gcaaacatca
     7981 atcctagccg cttcttagaa gaaagtaaat taatcaatga aaaatcaaaa aatcaaaata
     8041 tacaaaaaac tagtttttgc aaaggagatc tagttaaaca taaaattttt ggcattggca
     8101 gggttgttga agttaataaa agcggaaaag aggaaaagct taatattaat tttggtggta
     8161 taatgcgtgt aatcatggca agcttcgtgg aaaaagcagt atgaataaga tctttgcagc
     8221 ctttaaacca agaggtttga gttctaatgc ctttttaagt actttaaaga aaaaatataa
     8281 aaataaaaaa gcaggatatt ctggcactct tgatcctttc gccaaagggg ttttaatcgt
     8341 tgcgtttgga caatacacaa aacttttccg atttttaaaa aaaactccaa aaacctataa
     8401 agctacttta tggcttggag tttactcctt aagtcttgat gatcaaaata taaaagaaat
     8461 taaaaatata aaagaatttg atcttgcaaa tttacaacaa atcattgatc aaatgcaagg
     8521 aattatctcc tatacaccgc cgcaatttag cgccaaaaga atcaatggaa ctcgcgccta
     8581 tgaacttgca aaaaaaggta tagaagcaaa tttaaaacct tgccaaatgg aagtatttga
     8641 ttgcaagatc ttaagctata atcatccttt tttaaatatc gaaatcacag tcagtgaagg
     8701 tgcttatata agatcttatt gtgaactttt tgctagaaaa ctaggtatta atgcgacttt
     8761 aagctcttta gagcgcatta aagaaggcaa atttgtttat aataatgaga aaagcttaaa
     8821 tgtgttaaaa tacattgacc taaagccaaa ttttatcaag aaattaaata aactcgaaaa
     8881 tggtgctaaa atttttgtcg aagaattaga atttcatgat gaaggagatt attatattga
     8941 aacagaaaaa tattttagca taattaatat taaagaaaat acagtaaaat atcttctaaa
     9001 taaggttgaa aaatgttaat attatcaaga aaagaaaatg aaagtataat tatcggagaa
     9061 ggtatagaaa tcaaagtcgt tcaaacaggg aaaggatatg ccaaaatagg catagaagct
     9121 ccaaaatccc ttatgatact tagaaaagaa cttgttcaac aagtaaagga tgaaaatttg
     9181 cattctgttg ttcagaatga tattaaactt gatgacttaa gcaaaaaact aatcaaatga
     9241 aagcttacgc taaagcaaat atttttttaa aacttaccgg ttttgactca agaaaatatc
     9301 atcttttaga atcacgattt atacttttaa aagatgtttt tgatgagctt gagcttgttg
     9361 ataaagaatc agactctaaa aaagaatttg aaatcattag taattttaaa tgcgaaaata
     9421 atattattca aaaggcttat ttgctacttt ctaaaagata taataacgaa ttaaaagaat
     9481 tatttagcaa aaaaagccta aaactcacaa aaaatatccc agtatgcgct ggacttggtg
     9541 gtggaagtag cgattgtgcg agttttttac tactaatgaa tgaaacccta aatttaaaat
     9601 taaacctgca agaacttata aatttaagca tacaactagg aagtgatatt gccttttttt
     9661 taagtggctt tcactctgct aatgtaagtg gctgtggcga aattatagaa gaatttgaag
     9721 atgacatacc taatttaaaa tggacttttc cacaaatatc ttgccaaact aaagctgttt
     9781 atgatgaatt tgatagagga atatttgact ttcaaaaaaa caataatcaa gcgcaaatct
     9841 acaaaaaact cagcacaaaa gagttgttac aaaattttaa aaacaaagaa ttaaatgatt
     9901 tatttactcc ttgtgcaact ttatatccta aaatgaagtc ttacttacaa gaagattttt
     9961 ttctaagcgg tagcggtagt agtgttttta aggttgatcg atgaaaatta ttgcgagaaa
    10021 taaaaaagct ttatttgatt atagcatcat agaacgcttt gaagccggaa ttgtccttaa
    10081 aggaagtgaa gttgtagcct taagagcagg aagagcaaat cttaaagact cttttgttcg
    10141 cattataaaa aatgagattt ttttacttaa ttctcatatt tcattgcttc atactacaca
    10201 ttctttctat aaacacgaag aaagaggtgc tagaaagctt ttaatgcata gaaagcaaat
    10261 tgataaatta ttaggtaaag taagtataga aggatatact atcgttgcat tagatcttta
    10321 ttttaacaca aaaaataaag taaaagctac ccttgcttta gctaaaggga aaaatttgca
    10381 cgacaagcgt gaaactttaa agaaaaagca agccgattta gaagctagag ctgctatgaa
    10441 aaattacaaa taaaggaaaa taaatgaaaa aaatttcagc cctattttta ataagtttag
    10501 cattttttct taatgcttgc tccaaggaag aagaaattca aaatgatttt atgtttgaag
    10561 agtatcacaa aggagataaa atagtcttaa atagtgtaaa tggtggaagc aaaactttaa
    10621 taagaacaga taaaggtttt gtggtggaag gagaggaagg aaaagttcta atgtttgatt
    10681 tttttggcac tttttgcacc ccatgtaaag aagaagcttt agatcttagc aaactttgga
    10741 aaaataattc tagcaaattt atcattatag gacttacaca ttttgaagat gttagcgatg
    10801 aaacagttaa aaaattcgcg ggtgattatg gtgcttacta ttttctaagc aatggcagct
    10861 ctaatgatcg tattattgct caaattttaa aagatataga ctatcaaaat atggagcaac
    10921 ttccttttaa agttgtttta aaaaatggaa tttatcaaaa aataagcgat tactggaata
    10981 ataatactcc aacaaatttt tatcttggta aaattccaac agaactcatg caagaagatt
    11041 taaataaaat ctacaaagga aaataatgcc aaaaacccaa actctagagc aaacaaaact
    11101 tagtgaacca aaaatgtata aagttatact cttaaatgat gatgtaacaa ccatggattt
    11161 tgtcatagaa attttgatga atatttttca tcaaaacctt gagaaagcaa gtcaaacaat
    11221 gttagaaatt catcacaatg gttctggaat ttgtggcatt tacacccagg aaatagctct
    11281 ttcaaaacaa aaaaaagtta tggatgcggc taaacttgct aattttccac tacaagcaaa
    11341 ggtggaagaa gaatgaaata ccaagaaaat ttacaaaaat atcttgataa tgccaaaaat
    11401 ctaagcttaa taaatcacca tgaatttgtt acctgtgagc atgtactgtt tgcattacta
    11461 aaactaagca ctgattttaa ggatatattt gaagaatttt cagatggaga tcttgaactt
    11521 ctagaaactg aattaaaaaa ttacatttct caaaacaatc aagttattaa acaagaaata
    11581 gaacctacaa tatctgttgt tttagatgaa atcttacttt catctaaaaa taaaaataat
    11641 gaaattaaaa ttatagattt tttagaaaag ctcatacagg attcaagaag ttattctagc
    11701 tatctcttaa aaaaacacaa cataaatctt aacaaaattc aagaacttca aaatcatgaa
    11761 aatatacaaa atttaaacaa ccacacaagt gatttaacac ttttagctca aaatggcaaa
    11821 attgatcctt taataggaag aaaatttgaa cttgaaagaa tgatgcaaat tctttcacgt
    11881 cgcaagaaaa ataatcctat tttagtagga gaagcaggag ttggaaaaac agccattgta
    11941 gagggattag cattggctat tgcggaaaaa aaggtgccta aaaacttaca aaatgcaaaa
    12001 atttttagtc ttgatatggc tagtatactt gcgggaacaa aataccgtgg agattttgag
    12061 aaaagaatta aagaaatttt aagtgaactt gagaaaatac ccaatgctat tttatttatt
    12121 gatgaaattc acactatagt aggagctgga agcacaggag aatctcatac tgatttttcc
    12181 aatcttttaa aaccagctct aagcaatgga actttaaaat gcataggtgc aacaactttt
    12241 atggaatata aaaatacttt tgataaaaat aaacccctaa gtcgccgttt tgctaaaata
    12301 aatgtagatg aaccaagcca agaagaaagc ttgcaaattc ttaaaggatt aaaaaacaaa
    12361 tatgaagaat ttcatcatat caaattaaac gatgaaattc ttcaatatgc tgtaatttgg
    12421 ggtaaaaaat tttttaatga taaattttta cctgatagcg ctatagatct gatcgatgaa
    12481 cttggcgctt cttttgcttt aaatccaaga gctaaaaaaa atgccaattt aaaagattta
    12541 gaaaatgttt tagcaaaaat gacccaccat cacaaaatgt ttgaattcga tcaaaataaa
    12601 gctttaatga acttaaaaac aaatttaaaa gcaaaaattt ttggccaaga tgaagttata
    12661 gatagccttg tttcatcact taagcaaagt ttcgcaggat ttaaaaattc caatacacca
    12721 cgcggagtgt ttttgtttac tggatcaagt ggagttggaa aaacagaact ttgcaaagct
    12781 ttagctgaat ttttaggttt aaatttagaa cgctttgata tgagtgaata tgcagaaaaa
    12841 catgctataa gtaaactaat aggatctcca gctggatata taggttttga agagggtgga
    12901 cttttaagca atgctattcg caaaaatcct ttcagtcttg ttctttttga cgaaatagaa
    12961 aaggctcatc ctgatttaag caataccttt ttacagattt ttgacaatgc tgaactcacc
    13021 gacaatagtg gtcttaaagt agattttaaa aatacaatca ttattatgac atctaatcta
    13081 ggacttaaag aaagcaatga gcttggtttt ttaagtaaaa atgaagaaaa aagtaatcgt
    13141 gctatcaaag acttttttgc tccagaattt attaatcgca ttgataaaat tttacatttt
    13201 aatgatttaa acgatgctat acttgttaaa attatcgaaa aagaacttga cgaaatttct
    13261 aaaaatttaa ataatataaa attatcagtg gatgataaag ctaaaattta tttagctaaa
    13321 aaagcctata ataaagaatt tggagtaagg cttttaaaac gcataatttc tgaggaaata
    13381 ggagaaaaaa tcagtgatga aattttattt ggaaagctta aaaaaggtgg tatagctaaa
    13441 atcaaacttg gtaaaaatga aaagctcgaa tttatattct aaattactca atgcgcctaa
    13501 aaatgctcct gtatttttaa gtcaaaattt agaagctgat tttattgtaa aagcttatac
    13561 ttttggtcta ttcccatgga caagtaaacc tgtaacttgg tggtgtccag atcctagatg
    13621 cattttaatt ccaaatcaaa ttcacatcca aaaaaatatg aaaaaattta ttaatctcta
    13681 tcaaattaaa cttgattatg attttttaaa attaattaca ttatgtcgcg atacacgctc
    13741 tcaaagctgg atagatgatg aatttattac cacttattat aagttattta cccaaggcta
    13801 tgcgcatagc cttgaacttt atgaaaataa tgaacttata ggtggaattt atggtttaat
    13861 tttaggcaag gttttctttg gtgaaagcat ggtaagcatt aaaaaaaatg catctaaagt
    13921 tgccatgatt aaactttgtg atttattaaa accttatgat tttatcatag attgtcaagt
    13981 ttataaccaa catttagaat ttatgggtgc tcataatatt tctaggaaag aatttttaaa
    14041 tattttaaaa gaaaaatgca atcaagaaag tggttttaaa aattttaaag atttaattac
    14101 ttaaaaataa gcgtgaaaat cacgcttatg acatcgcttt agcaacttca gcagagcttt
    14161 cacgaatttt ctccatacac tctcttgctt cttttgcaag ttcaacactc tgattaacat
    14221 cctctaaacc gcttttaata ctctcaacca cttgtgatgt aacattgcga atagaattaa
    14281 tcgtagtggt aatttcatta accgaatgcc ctgttctttc agctaaattt cttacttcat
    14341 cagcaacaac agcaaaacct ctaccatgtt caccagcacg tgctgcctca atagcagcat
    14401 ttaaagcaag cagattagtc tgatcagcaa tatcactaat agtttgaata atagatttaa
    14461 tttcatctga ttgttgattt aaagaggaaa caagatttga actttgagac atcatatcag
    14521 caatattctg aacatttgaa acagtgtttt caattacacg atctccatct tgagtaagat
    14581 tatcattttt ttctgcaagt tcgcttatga gacgaagttt ttcttgatct tttttaactt
    14641 gttcgcttat atctgtagca aatttaataa ccttgtaaat ttttccatca tcatttttaa
    14701 ccggattata acttgcttca aggtatactt ttttattatt tcttccgtat cttatatatt
    14761 tacctgattg aaatttaccc tctcttaaat cttcccaaaa ttgaacatag tccttagagt
    14821 gtctataatt agaatcacag aacatactat gatgctttcc tttaatctca tcaatattaa
    14881 aatccatagc tcttaaaaaa ttttcattag ccgtaataat agtcccatca ggtttaaatt
    14941 caataatagc catagaacga ttagcagcag caatagtatt tctaagatca agcatttcat
    15001 aatgtctttg agttatatca ttggcaaatt taataatttt ataaacataa ccattattat
    15061 cactaattgg aagataattt gcttctaaat aaacatctat ccctccctta gctatacgtc
    15121 taaaaagacc acttctagct tttccatctc ttaaatcttt ccaaaaatca ctatatgctg
    15181 aagaattaac aacttcaggc aaacaaaaca tactatgatg cttacccttg atctctgaaa
    15241 gggagtattt catagttgtt aaaaaatttt gatttgcctc taaaataacg ccatcggtag
    15301 taaattcaat taccgccatg gtattcccaa tagatcttaa aatatctcct aaaccattac
    15361 attttttttc aagttgttca attattttag tattattttt cttagcacca aacataaaac
    15421 tcaccttttt aataataaat tattttaaaa ttatatcata tttatatagt attatttact
    15481 taaaattata ttaatttata agttaaatat atcctttaaa cctacaataa tcatcttaaa
    15541 ccccatagca acaataaata cttgtgctat acgagaaaaa acatgtaaaa tcaattttcc
    15601 aactattttt tctatagtag ctgcaaaatg aaaaagtata aacataaaaa taaaagctat
    15661 cattactcca ccaagagcaa catcaagccc accatcttcg gctataacaa taacgctagc
    15721 taaagttcca ggcccaacaa gcataggaaa tgccataggt attaaactct gtcttaaaat
    15781 ttccttatca tccatatctt gataagaact aaaatcctta gttgcaattt ttgttgaaaa
    15841 aagtaaattt ttaatagcca ttataataag aaccaaacca ccagaaaccc ttaaatcatc
    15901 caatgaaact ctaaaaatat agttcataaa taaaggtcct gataataaaa acaccaaaac
    15961 tatagtaaaa gctgtataga gaatagttct aaaaagtttt tttcgaagca ttaaaggcaa
    16021 tccatcactc atagccaaaa attgagttaa attaccaaaa ggatttaata tagcaagtaa
    16081 agtaattgca gcaaaaaaca tcaaataaag ctcagaaccc atactagaaa acactatcaa
    16141 tccttagttt ttacaaattc caaagaaata gaatttacac aatgtcttac atttttagca
    16201 gaaaatcctt ctccttcaaa aacatgacct aaatgtccat tgcagtttgc acatacaatc
    16261 tcggttctaa tcccatcttt atcaggaatt cttttaatag ccccttttat ttcatcatca
    16321 aagctaggcc atccgcaacc tgatttaaat ttatcttcgg atttataaag cgaagctcca
    16381 cattgcttgc attgatagat tcctttttca taaaaatcat tatatttccc actaaaagga
    16441 gcttctgttc ctttatttaa aattac
//
LOCUS       DAPOLW010000021        16320 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.021, whole genome shotgun sequence.
ACCESSION   DAPOLW010000021 DAPOLW010000000
VERSION     DAPOLW010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16320
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.021"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..822)
                     /locus_tag="ROE18_000499"
     CDS             complement(<1..822)
                     /locus_tag="ROE18_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HDX3650706.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLNLIDEKILKPPLELVEIGANEGYLSRDFLAALLELRPEIFSQISFFIIEPHEKLR
                     TLQKKTLEGVEFTHKNSLKECHFKNAFFFCNELFDSFTCELIDHDKMAFVENFKLIFK
                     NMDENLITKCKTLNLKKGELSLELENFFKDLDQACERFIFVGFDYGTLNPQNFSLRIY
                     QKHEVFSPFEVSLKDFFGKSDLTYNVNFAHLQKLIKEYDFKPLAFKKQSLALMDFG"
     gene            complement(819..1640)
                     /locus_tag="ROE18_000500"
     CDS             complement(819..1640)
                     /locus_tag="ROE18_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDX3650707.1"
                     /translation="MKALWLFLSLTLWLFGAQNLELIKGQALFLELDKKDFLSLKNND
                     KNIPTFAHPKNQEKVLAIFSLPYKNPPQNTKLIAFYKDKKEEIFIKTLEGNYKSEKLQ
                     VENKKIFPPKTVKERIAKELKEANAIYSSYTPKALFNGAFNIPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRAATGTPIYAANSGIVKIAKDRYFAGNSVVIDHGFGIYSQYYHLS
                     KIDVKVGQKIKKGELIGLSGASGRVSGPHLHFGILAGGKQVDPLDFVSKFNAIFQ"
     gene            complement(1637..3631)
                     /locus_tag="ROE18_000501"
     CDS             complement(1637..3631)
                     /locus_tag="ROE18_000501"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HDX3650708.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWNNVLEEYRLVSDFKF
                     YYTPRRLVFFHENFADKQEDSFAEFIGAPKNVAYKDGVLTPAGQSFLQKARISENELS
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMVEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     TCILNDELVNFQSYGVKSTKKTFIHRSVSYDLQDFNNAKEYFELLEKNYIILDPIKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPSEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYQICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKEFDIQILLEKLSNHYKSFD
                     MQILKDFIFERLYTFYTVNASFVKAVLSSQNTDLIHINQSVNALIKLSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            complement(3687..4307)
                     /locus_tag="ROE18_000502"
     CDS             complement(3687..4307)
                     /locus_tag="ROE18_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDX3650709.1"
                     /translation="MINVFFDMDGTLIDSANAISCAVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSNFREGYEKYFVKHYEQSVVLFEGVKELLEFLKSKNCFL
                     AIATNAPQSSLSNILKKHDIIPYFDKILGVSLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKNLKENEFSNSSELKDFLQKYL"
     gene            complement(4304..4636)
                     /locus_tag="ROE18_000503"
     CDS             complement(4304..4636)
                     /locus_tag="ROE18_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650710.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKNELLNLANALDKQKKQGGKKEKH
                     KNYLKDYE"
     gene            complement(4646..6271)
                     /locus_tag="ROE18_000504"
     CDS             complement(4646..6271)
                     /locus_tag="ROE18_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDX3650711.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLICGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTTLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            complement(6278..6652)
                     /gene="hspR"
                     /locus_tag="ROE18_000505"
     CDS             complement(6278..6652)
                     /gene="hspR"
                     /locus_tag="ROE18_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HDX3650712.1"
                     /translation="MEQHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRLELSKQQDK
                     EAASKAVVKHKNSFDLIFYEKK"
     gene            complement(6668..7561)
                     /locus_tag="ROE18_000506"
     CDS             complement(6668..7561)
                     /locus_tag="ROE18_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HDX3650713.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNTGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEEILDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEATINITPNSKNNQKIRLKGYGVQNRKSDIYGDMYLILNV
                     VLPNLDTLDEKFIELLKEKLP"
     gene            7761..9179
                     /gene="htrA"
                     /locus_tag="ROE18_000507"
     CDS             7761..9179
                     /gene="htrA"
                     /locus_tag="ROE18_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HDX3650714.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTATANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFSQRKGKNDKEVVSS
                     LGSGVIISKDGYIVTNNHVVDDADTITVNLPGSDIEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTILALQGDTKKAYKNQEGALITDVQKGSSADEAGLKRGDLVTKVNDKVIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGVQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLLLK"
     gene            9255..9929
                     /locus_tag="ROE18_000508"
     CDS             9255..9929
                     /locus_tag="ROE18_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDX3650715.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIVSSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            9926..11173
                     /locus_tag="ROE18_000509"
     CDS             9926..11173
                     /locus_tag="ROE18_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDX3650716.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVVLGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKILFRGDVLARVEVNNGL
                     IEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAIAVICILVLLYIYIFKKL
                     KPLKRLKKQIDKFAQGKLGDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     IMHELKTPITKGLLTLEMIEDNKYKERLNGVFTRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDSNIRIFMEESFFVNVDFKLFTTAIKNMIDNGIKHSEDGF
                     VQIDIIDDYICFKNRGPELNNTLEYYTQAFTQGSKQKSSFGLGLYIVNTILETHGMKL
                     DYLYEDGVNLFYFRNLKSVIVKE"
     gene            11266..11340
                     /locus_tag="ROE18_000510"
     tRNA            11266..11340
                     /locus_tag="ROE18_000510"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11298..11300,aa:Asn,seq:gtt)
     gene            complement(11431..11679)
                     /locus_tag="ROE18_000511"
     CDS             complement(11431..11679)
                     /locus_tag="ROE18_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HDX3650717.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSTIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLKQTK"
     gene            complement(11690..12289)
                     /locus_tag="ROE18_000512"
     CDS             complement(11690..12289)
                     /locus_tag="ROE18_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HDX3650718.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFKLAAKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKDIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDVSFEAAEDEDNEHPQFYLYTCN
                     CPGKIHDVPYSIHQKIELQGHKFTCKTCKQAIKFYKKYS"
     gene            12437..13102
                     /gene="dccR"
                     /locus_tag="ROE18_000513"
     CDS             12437..13102
                     /gene="dccR"
                     /locus_tag="ROE18_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HDX3650719.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGY
                     CYG"
     gene            13095..14285
                     /gene="dccS"
                     /locus_tag="ROE18_000514"
     CDS             13095..14285
                     /gene="dccS"
                     /locus_tag="ROE18_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HDX3650720.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLTIFFALWYQKLYEELVVLKGATL
                     RENHRNIVISILNSRFTPIDISAKNIAQSTALKFAIFDVKKIVFSNIDFDLRKAKIEL
                     KGRGICDNKVFFLAPMSADHYFLRHASNEEVNTNDGLQILIQGEDVGKDLFWIRTKVF
                     GFAIMAFCILGLISYILVKIALKPLEDKISTLNRFIKDSTHELNTPLSVILMSIEQLE
                     HQNLGDNAKFTRIKLAAKSLSQVYSDLVFYNFPNTLETEKQKFDLRILLEERLEYFKV
                     FFEQKKITLKLDLNQANIFAPKSQISKLIDNLISNAIKYNKKGGVISIILKANFLSIA
                     DTGCGISKSNLNHIFDRYTRFNTDQGGFGIGLSLVKKVCDDNDIKIICESVENQGSVF
                     KLNW"
     gene            complement(14328..15965)
                     /gene="groL"
                     /locus_tag="ROE18_000515"
     CDS             complement(14328..15965)
                     /gene="groL"
                     /locus_tag="ROE18_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HDX3650721.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPTMPDMSGMGGMGGMGGMM"
     gene            complement(15986..16246)
                     /gene="groES"
                     /locus_tag="ROE18_000516"
     CDS             complement(15986..16246)
                     /gene="groES"
                     /locus_tag="ROE18_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HDX3650722.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
BASE COUNT         5405 a         2440 c         2468 g         6007 t
ORIGIN      
        1 accaaaatcc attaaagcaa gactttgttt tttaaaagct aaaggtttaa aatcatattc
       61 tttgatgagt ttttgaagat gagcaaaatt gacattataa gttagatcgc ttttgccgaa
      121 aaaatctttt aaagatactt caaaagggct aaaaacttcg tgcttttgat agattcttaa
      181 gctaaaattt tgtggattca aagttccata gtcaaatccc acaaatataa atctctcgca
      241 agcttgatct aaatctttaa aaaaattttc aagctctaaa ctgagttcgc cttttttaag
      301 atttaaagtt ttgcattttg tgatcaaatt ttcatccata tttttaaaaa taagtttaaa
      361 attttctaca aatgccattt tatcatgatc tataagttca caagtaaaac tatcaaaaag
      421 ttcattgcaa aagaaaaaag cgttcttaaa atggcattct ttaagactat ttttgtgagt
      481 aaattccact ccttctaaag tctttttttg taatgttctt aatttttcat gtggttctat
      541 gatgaaaaaa gaaatttgag aaaaaatttc aggtcttaat tcaagcaaag cggctaaaaa
      601 atcacgactt aaatagcctt cattagcgcc tatttctaca agttctagtg gaggtttgag
      661 aattttttca tctattaaat ttaaaaaatg cttggctaaa agtgtgccaa aaagatttcc
      721 tacactcaca gcagtaaaaa aatctccgtt ttttcctata cttacagcat ttttataata
      781 gctttcatgt agccaagcat ggaaaaagtc actaaatttc attgaaaaat agcattaaat
      841 ttagatacaa aatccaaagg atcgacttgt ttgcctccag ctaaaattcc aaaatgcaaa
      901 tgcggcccac ttaccctacc actagctccg ctaagtccta taagctcacc tttttttatc
      961 ttttgtccta ctttaacatc gattttagaa agatgatagt attgtgaata aattccaaaa
     1021 ccatgatcaa tgactaccga atttcctgca aaataacgat cttttgcgat ttttactata
     1081 cctgaattgg ctgcataaat aggtgttcct gtagcggctc taaagtccgt tccgctatga
     1141 taacttgcta ctttttcatt aaaagttctt gctttgccaa aatcacttgt gataaaagaa
     1201 tttaaaggta tattaaaagc accgttaaat aaagcttttg gagtataaga gctataaatc
     1261 gcattggctt cttttaattc tttagcgatg cgttctttta cggtttttgg cggaaaaatc
     1321 tttttgtttt caacttgcaa tttttcactt ttataattac cttctaaagt ttttatgaaa
     1381 atttcttctt ttttatcttt ataaaatgcg ataagttttg tattttgcgg gggatttttg
     1441 taaggtaagg aaaaaatagc tagaactttt tcttgatttt taggatgtgc aaaggtggga
     1501 atatttttat cattattttt taaagataaa aaatctttct tatctagctc caaaaataaa
     1561 gcttgacctt tgatgagttc taaattttga gctccaaaaa gccaaagagt aaggcttaaa
     1621 aaaagccata aggctttcat aggcttaact ctttaagatc ggcgattttt aaaaactccg
     1681 cataaatttc ataaaccaaa gcttggcgat tatttttaag tttttcatct tcagcattaa
     1741 tcatcacttg attaaaaaac tcatcaataa aaggcttaag tgcaaaaaga ttttcaagtt
     1801 tttcttgtaa agagttggct ttagtttttt cttgaaaagc tttgtaaagt ttactttctg
     1861 cttcttgaac aaaaagactt tcatcaactt tatgaggatt tttagtggcg atattggcta
     1921 gtcttttaaa ggttgcaaaa ttttcattaa aattatcttt tttgctaagt tttataagag
     1981 catttacgct ttgattgata tggataagat ctgtattttg tgagcttaaa accgctttta
     2041 caaaagaagc attgactgta taaaaagtat aaagtctttc aaaaataaaa tcttttaaaa
     2101 tttgcatatc aaagctttta taatgatttg aaagtttttc taataaaatt tggatatcaa
     2161 attctttatt taaatttaaa gcaattttaa tgatcccatt ggcagctctt cttaaggcat
     2221 aaggatcctt tgttccgctt ggaatttttc ctatgctaaa aagtcctata agggtatcaa
     2281 gcttgtttgc aagggctact atgcttgaaa attctgtact tggaagtgga gcttgttcgg
     2341 aattaggaag atattgttct ttgatggcta agcaaatttg ataatctaag cccatttttt
     2401 gcgcataata acttcccata atgccttgca aatcagtaaa ttcataaacc atttgtgtgg
     2461 ctaagtctgc tttggcgtat tttagtgctg tgctgatatt ttcgatttta tcattatgga
     2521 gcatttgaca taaaatttca gcaattttaa tctctcttaa acttttatct tgcattgtgc
     2581 ctaaaccttc aagataggtc attttggcaa gtttttcagg ttttaagcca ttttgtaaat
     2641 cattttgata aaaaaacatt gcatcgctaa gtcttgcacg caaaactctt tcatttccat
     2701 gtatgatttt tgaataatcc ttacatactg cattacttac tactataaaa tgattactta
     2761 agcctttatc gttaaaaact gcaaaataac gttgattttc tctcattgaa gtgatgatta
     2821 cttcgctagg aatttctaaa aattcttctt caaaacttcc taaaagtgca ttaggatatt
     2881 ctgtgatagc aactacttca gctaaaagct cttcatcttc tccaatttgt atattttttt
     2941 gactttctat gagtttaaat tgctcaagta ttttttcctt tcttttgatt ggatcaagga
     3001 tgatatagtt tttttctagt agttcaaaat attcttttgc attgttaaaa tcttgcaaat
     3061 cataacttac gcttctgtga atgaaagttt ttttagtact ttttactcca tagctttgaa
     3121 aattaacaag ttcatcattt aaaatgcaag ttatagaacg gatcgcacgg atgaattcaa
     3181 aagaatttgc accccagcgc atacttttgc caaaactaag actttttaaa aatttttcta
     3241 ccatttctcc taaaatttct tgactttgca aacctttaat agctttttga tggtacaaaa
     3301 cttccttgcc tttgatttct ttaaaagaga gttcattttc actgatcctt gctttttgca
     3361 ggaaactttg tcccgcagga gttaaaactc catctttata agcaacattt ttaggtgctc
     3421 ctataaattc agcaaagcta tcttcttgtt tgtctgcaaa attttcatga aaaaaaacta
     3481 aacgacgcgg agtataataa aatttaaaat cacttaccaa gcggtattct tctaaaacat
     3541 tgttccattt tttttctata ttagctaatt cttttagcaa aggaatagca ggtaattctt
     3601 ctgtaccaat ttctattaat aattcactca taatttactc tttttaaaat ttatttctaa
     3661 ttttaactaa aatttcatta aaaaacttat aaatactttt gcaaaaagtc tttaagttca
     3721 ctagagttgc taaattcatt ttcttttaaa tttttttgat accatttggc atgaaaataa
     3781 ggcaaattag catttttagc acattcttta tctttttgac tatctcctat aaaaacgctt
     3841 gttttatatg gagcctcgct ttttaaaagc tctagcatca taggatgagg tttgggttct
     3901 atgcctaaac ttacgcctaa aattttatca aaataaggaa tgatatcgtg ttttttaagt
     3961 atgtttgaaa gtgagctttg tggggcgtta gtagcaatag ctaaaaaaca atttttgctt
     4021 tttaaaaatt ctaaaagttc ttttactcct tcaaaaagca ccacgctttg ttcatagtgc
     4081 ttgacaaaat atttttcata gccttctcta aaattagaat gatggaaatt ttctatatta
     4141 taaagttctt ttgcccagtc aatattggga gtattgatgg tttgcataat gatttctctt
     4201 gaaagtgggg ctagatttaa atcctgtctt atttcattga ctgcacaaga aatggcattt
     4261 gcactatcga ttaaagttcc atccatatca aaaaatacat taatcattca taatccttta
     4321 aataattttt atgtttttct tttttcccac cttgtttttt ttgcttatct aaagcattgg
     4381 caagatttaa aagctcgttt ttttctttgg aaaaatctaa acaagcattg acaaaaaatt
     4441 caagattttt tgcataggtt gagttaagat ttaccgcggg atttttttca aaaaatttag
     4501 cattttttaa cattctttct tcaaatttag ttttatcaaa atcttctttt ttaagtgcag
     4561 atatagcgcc attgaaaaat ttttcaagat ttcttaggta ttttacgcgt aaggcttttt
     4621 cttcattttt tgtcaaaatt cttccttagg tatttttgtg aatgcggcat tctagcgctt
     4681 cttgaactaa atttctagcg attacttttt cagagcgaat gatgcgtata ttttcatcta
     4741 tgctagaaaa aagcatcttt tttaaagttc catttacatg aatgatggtg tctataggtt
     4801 ttggataatt agctagcact tgacataaaa tttcaagttt agcttcattt gtaactgtga
     4861 taatagctac ggcacattct tctatattgg caatttttaa ggtttcttct tgagcagcat
     4921 tggcaaaaac gacattttca cctcgactaa ctccaagttc tactaaattt aaatcacttt
     4981 ctaaaacaag ataaggtacg cctgtgtttt tgattttttg tacgacttct tgtcctaagc
     5041 gtccgtagcc aaaaacaaca agatgatttt taagcttgat attgctgtca atattttgca
     5101 cagcgttggt attaagtgct atatcttcta caacattggt aatttttctt atattgttta
     5161 aaataaaagg tgtgataatc atggttaaaa tagaaacaac aattaaaatt tgtgaagttt
     5221 tgatatcaag catatttttt gcttgtaaaa gagaaaaaat tgctagggcg aattcgccaa
     5281 tttgagctat ggcaaaagct gttttaagcg ctactctttt tttggtgtaa agaaataaaa
     5341 agccaaaaac tatgccaaat tttaaagcca ttacaagaag ggttaaaact atgattaaaa
     5401 accaattttg tgccactaca tcaagttgaa tttgcatgcc tacagttatg aaaaaaagcc
     5461 ctaaaagcaa atctctaaat gggatcaagt ccgcttctat tttgtgttta tattttgttt
     5521 ctgctatcaa agcacctgct ataaaagcac ccaaagaata agaaaatcca aaataatttg
     5581 ctaaaaaact tgctccaata accataaata aaacagtact aataaaaatt tcctgagaag
     5641 aagtgtggat aatgagtcta aaaattctat ccactagata tttacctatg aaaaataata
     5701 aagtgattaa aataagtgct gaaattaaag tggtaaaaag gagtttttct atgttttgat
     5761 tgttggatga aaaaatatct acaagcaaaa gcaaaggaat aacggctata tcttgaaaaa
     5821 gcaaaattcc caatgctttt ctaccatatt gctcattgat atcgccatta tcatttaaaa
     5881 ttttaagcac cactgcggtt gaagaaagcg ctagtgcaaa gcctactata gtagcgcttt
     5941 tatctccaag tcctaaaatt cctatagcaa gtaacataaa aacaaagcca caaataagca
     6001 tctgcaaaga gccgtttaaa aaaacttctt gtttcattgc cattaaatgc ttaaaagaaa
     6061 attcaagccc tatggtaaac attaaaaaca ctataccaaa ttcggctata tgggtgattt
     6121 cgcctttgcc acttaaatga taaatttcag aaatgatttc tccagcagct atatatccaa
     6181 tgatagttgg aatttcaaat tttttaaata tgacatttaa aactatagct atagcaacgg
     6241 tgattaaaaa aatttctaaa aaattatcca ttatttttta ttttttctca taaaaaatca
     6301 aatcaaagct atttttatgc ttaacaacgg ctttactagc cgcttcttta tcttgttgtt
     6361 tgcttaattc taagcgtagt tcatcaatta aattttcaaa ttcgtgaagt tggtttttca
     6421 attttaagat aacatctact ccagcaagat tgattcccat gtctcttgtt aaacgcaata
     6481 taagtttaat acggtcaata tctctttgag aataaagtct tattttgcca tcggttctac
     6541 ttggctctat caatccttct ctttcgtatt gccttaaggt ttgtggatgt atgcttaaaa
     6601 ctttagccac aacactgatt aaatatacag gttcatcata atgctgttcc atattttatt
     6661 cctttcttta aggtaatttt tcttttaaga gttctataaa tttttcatca agggtatcta
     6721 aatttggcaa aacaacattt aaaatcaaat acatatcccc ataaatatca ctttttctat
     6781 tttgcacacc ataacctttt aaacgaattt tttggttatt ttttgaatta ggcgttatgt
     6841 taattgttgc ttcttccttg ccttctttga gtgtttttat atttattttt ccaccaaaaa
     6901 gtgcagtttt taaagaaata tcaacctttt gatataaatc atcatcttct cttgtgtaaa
     6961 taggactttc ttctattttt acaataatga ttaaatctcc tctagctcca tttctgcttt
     7021 gttttccttt agagcgaatt cttagtttct cgccttcttt tataccatgt ggaattttaa
     7081 atttaatggt ttcgccttga aaattaaaac tatgttcccc gcctttaaca gctttttcga
     7141 aaggaatgtg aagctctaga ttgctgtcta aaatttcttc ttcaaaacct ccaaatcctc
     7201 caaaaccact gctaaagcct tttgaagaaa agccgttaaa accccctctt gagcgtccac
     7261 caaagcctcc tccaaagaga tcttttaaaa tatcgtccaa atttacccca ccagtatttc
     7321 ttgaaaaatc atgaaaactt tgtccaccaa acatagaatc gccgtattgg tcatactgag
     7381 ctcgtttttt ttcgtcactt aaaatttcat aagcagcatt aatttcttta aatttttctt
     7441 cagcaccttt ttctttgttg atatcaggat gatattttct agctaggcga cggtaagctt
     7501 tttttatttc atctgcacta gcgtttttgc taactccaag agtttcgtat aaactattca
     7561 tgttatattt ccttaaaaat ttttacttga ttatatagag gattaaatta taacataaac
     7621 tttagcctaa gtcaatcaag ttttataaat ttttatcact caaggtttta tttacaattt
     7681 tgtaaatttt cggttttata ctatgaagac agtaaaatat tttacgagat aatttatctt
     7741 taagaacaaa aggaaatgaa atgaaaaaga tttttttatc attaagttta gcaagtgctt
     7801 tatttgctgc aagtattaat tttaacgaat cgactgcaac ggctaatcgt gtgaatcctg
     7861 ctgctggaaa tgcagtgctt tcttatcatg attctattaa agatgcaaaa aaatcagtgg
     7921 ttaatatttc cacctcaaaa actattacaa gagcaaatcg tccaagccct ttggatgatt
     7981 tttttaatga tccttatttt aaacaatttt ttgattttga tttttctcaa agaaaaggaa
     8041 aaaatgataa agaagtggtg agttctttgg gatcaggggt gattatttca aaagatggtt
     8101 atatagtaac aaataatcac gttgtagatg atgctgatac gattacagtg aatttaccag
     8161 gaagcgacat agaatataaa gcaaaactta taggtaaaga tccaaaaaca gatttggctg
     8221 ttataaaaat agaggctaat aatctttcag ctattacttt tacaaattct gatgatttaa
     8281 tggaaggaga tgttgttttt gcacttggaa atccttttgg agttggtttt agtgttacaa
     8341 gtgggataat atctgcttta aataaagaca atataggttt aaatcaatat gaaaatttta
     8401 tacaaacaga tgcttctatc aatccaggaa attcaggtgg agctttggtg gatagtcgcg
     8461 gatatttagt aggtattaat tcagctattc tttctcgtgg tggtggaaat aatggcatag
     8521 gttttgccat accttcaaat atggttaaag atatagctaa aaaacttatt gaaaaaggca
     8581 agattgatag aggattttta ggtgtgacta ttttagcttt gcaaggtgat actaaaaaag
     8641 cttacaaaaa tcaagaagga gctttaatca ctgatgttca aaaaggttca agtgctgatg
     8701 aagcagggct taagcgtgga gatttagtta ctaaagttaa tgataaggtt ataaaaagtc
     8761 ctattgatct taaaaattat ataggaactt tagagattgg tcaaaaaatt tcattaagtt
     8821 acgaaagaga tggagaaaat aagcaagcaa gttttattct taaaggtgaa aaagaaaatc
     8881 ctaaaggcgt acaaagcgat ttgattgatg gtttgagttt gagaaattta gatccaagac
     8941 ttaaggatcg tttgcaaatt ccaaaagatg ttaatggtgt tttggttgat agtgttaaag
     9001 aaaagagcaa aggaaaaaat tctggtttcc aagagggtga tattatcata ggtgttggac
     9061 aaagtgaaat taaaaattta aaagatttag aacaagcttt aaaacaagtt aataaaaaag
     9121 aatttaccaa agtttgggta tatcgcaatg gttttgcgac tttgcttctg cttaaataaa
     9181 aataacggaa ggattttcct ttcgttataa attttagttt aaaattaaaa ttaagtttaa
     9241 aataaaggaa aactatgaca aatattctta tgatagaaga tgatttagaa ttagcagaaa
     9301 ttacagctga atatttggaa aaatttgata tgaaagttga tatagctcat gaaccttata
     9361 taggtctttc taagcttgca ttaaaagaat atcagcttat cattttagac ctttctttgc
     9421 cagggcttga tgggcttgaa gtgtgtgaag agattcgtaa aaagtatgat acgcctatta
     9481 ttgtttcaag cgcaagacat gatattacag ataaggttaa tgctttagag cttggagcag
     9541 atgattacct accaaaacct tataatccaa aagaattaca agcacgtatt aaaagtcatt
     9601 taagacgtat ttcaaataca aaaagcgcca tagcaaaaag tgtaaaagat cttgtttatg
     9661 atcaatataa gcatattatt accatgaaag gacaagagct tactttaact aatgctgaat
     9721 ttgatatttt aagctatttg attaaaaaag agggtggagt ggtaagtcgt gaagagcttg
     9781 tttataattg ttcttctatt agtgaggatt ctagtaataa aagtatagat gttattatca
     9841 gtagaattcg tcaaaagatg ggagatgatc caaaaactcc aaaatatatt cactctatac
     9901 gtggaatagg ttataagctt actcaatgaa taaatcttcg attttttata ctataacttt
     9961 tatttttatt tttgctgggg ttagtgttgt acttggcttt ttgtggctta tagaatatga
    10021 tcagcaaaat tatactagag aattaaatac aaaatattct ttgatagcta atgcaaggct
    10081 cttaaatttt gcaggagtta tcagtgaaaa agaatttgaa gagcagacaa aaaattataa
    10141 taaaatggat gagataacag aagcaaagca gatccgtaaa attcttttta gaggtgatgt
    10201 tttagctagg gttgaggtta acaatggctt aatcgagatt atttcttata atagacaggt
    10261 gtatttaaat attatttatg atggaaaggt ttatctttat aaggatcaag attatcaaac
    10321 ctataggtat tttattatca aagctatagc tatagctgtg atttgtattc ttgtattgct
    10381 ttatatttat atatttaaaa aattaaaacc acttaaaaga cttaaaaaac aaattgataa
    10441 atttgcccaa ggaaagcttg gtgatataga agatgtaagc actggggtgg atgaaatttc
    10501 acaagtaagt gaagcttttt atcaagctat tgttcaaatt cgaaagttaa accaatctcg
    10561 tcagtttttt ttaagaaata ttatgcatga actcaaaact cctattacta aagggctctt
    10621 aactttagaa atgatagaag ataataaata taaagagcgc ttaaatgggg tttttactag
    10681 acttgaaatt ttaattaatg aatttgctgc tattgagcaa attacttcag gggctgcttt
    10741 tataaataga aaaaaataca atattttaga tgttttagat gaagccaaag aaattgcaat
    10801 gcgagatgat agcaatatac gtatttttat ggaagaaagt ttttttgtaa atgtggattt
    10861 taaacttttt actacggcga ttaaaaatat gatagataat ggtattaaac attctgaaga
    10921 tgggtttgtg caaattgata ttatagatga ttatatttgt tttaaaaatc gtggtcctga
    10981 gcttaacaat actttagaat actatactca agcttttact caaggatcaa aacaaaaatc
    11041 aagttttgga ttagggcttt atattgtaaa tactatttta gaaacacatg gaatgaagct
    11101 tgattattta tatgaagatg gggtaaattt gttttatttt agaaatttaa aaagtgttat
    11161 tgttaaggag taaattaatt tttttacata aaaaatgcat ttttgtgaaa aaacccttga
    11221 caaagttttt taatttcact ataatcacat tttactttta aatattccgg attagctcag
    11281 cggtagagta gtcggctgtt aaccgattgg tcgtaggttc gaatcctaca tccggagcca
    11341 cttttttaac tccattttta atattcataa atgtatttta atataaaaaa ttaataagtc
    11401 tttatcacaa aaaaattgtg ataaagtttt ttattttgtt tgtttaagat ttttgacaat
    11461 tttatctatt tttttacttg ccttttgata atccccatct ttaagttctt ctagggcatt
    11521 aacagcaaaa gaaaaatctt caacttcatt aagataagcc tctatggctt cttttactat
    11581 ggttgatttt ggtttagaaa gatttttact taaattatcc aaacgctcct taagctctaa
    11641 aggcattcta aaagaataag tttttacatt gcgtttcatt ttatcctcct taagaatatt
    11701 ttttgtaaaa ttttatagct tgtttacaag ttttacaagt aaatttatga ccttgtaatt
    11761 ctattttttg atgaatgcta taaggaacat cgtgaatttt accaggacaa ttacaggtat
    11821 aaagataaaa ttgtggatgc tcattatctt catcttctgc tgcttcaaag ctaacatcgc
    11881 caccatcatc tgtagacaaa gaagaacttc tccatttttc aactttcatg tcttcatata
    11941 gtatgtgttc taaaagccac tttttagcca ctatataaag tttttcttta agatcattgg
    12001 ttgatttgat atctttgatt aaattaatca tggtttggat gatttcttta tgtatttttc
    12061 gatgttcttc taaatttgga tagcctatta gctgcatgta tttttcttca tcattaaagt
    12121 gatctttcat ataattaaaa aattcagcca aaagttcttt gacttcattt ttacttacag
    12181 atctatctga tacaacttca acttttgcag caagtttaaa aagcttttta tgctgctcat
    12241 caattttagc attgtgcaca ctatagctgt tatcccattt tggaagcatt ttaactcctt
    12301 aaggaaaaat ttatttgtat gaaaggatta tagataaaaa taaattaaat aaaaatgaaa
    12361 ttttattaaa taattgataa gaattttgat acaatgatat atatttaaga gatttgaagt
    12421 tagaaagatt taaattatgg ctgctaaaat tttactttta gaagatgatt tgagcttgag
    12481 tgagatcatt gaagagtttt taaacgatga gggatatgaa gtatttttat gcgataatgc
    12541 gcaagaagct ttagatatgg cttatgaaag atattttgat ctttggattt tagatgtaaa
    12601 agttccttta ggagatggat tttcattact taaagaatta agaaaaagcg gaaagcaaac
    12661 tccagcaatt ttcatgactt ctttaaacac aacaaacgat ttaaaacaag gctttgacgc
    12721 aggttgtgat gattatataa aaaaaccttt tgaacttgcc gagttatcta tcagggttaa
    12781 agctttgctt aaaagagctt tttcacataa aaatgaagat tttgaagatt taggagatgg
    12841 atttagattt gaatttacta cacaaattct ttaccataat aataaagcct tgactttacc
    12901 gagtaaagaa attaagcttt tgtctttatt acttaaaaat aaaaacaact ttttaagtac
    12961 agagagaatt tttgaagaac tctgggatta tgatgaggag cctagtgagc taagtttaag
    13021 ggcttatgtg aaaaatttac gtaaaatttt aggaaaagaa aaaattataa atcaaagagg
    13081 caggggatat tgctatggct aaaaaagtca ttaggcaaat tttattaatc tacctaacaa
    13141 ctacaggtat ttttttaact attttttttg cattatggta tcaaaaatta tatgaagaat
    13201 tagttgtttt aaagggtgcc actttgagag aaaatcatag aaacattgtt ataagcatct
    13261 taaattctcg ttttacccct atagatataa gtgcaaaaaa tattgctcaa agcacagcac
    13321 taaaatttgc tatatttgat gttaaaaaga ttgtttttag taatatagat tttgatttaa
    13381 gaaaggcaaa gatagagctt aaaggtagag gtatttgtga taataaggtt tttttccttg
    13441 ctcctatgag tgcagatcat tattttttaa gacatgctag caatgaagaa gtaaatacta
    13501 acgatggttt gcaaatttta atacagggtg aagatgttgg caaagatctt ttttggatta
    13561 gaacgaaagt ttttggtttt gctattatgg ctttttgcat attgggttta atatcttata
    13621 ttttagtaaa aattgctcta aagcctttgg aggataaaat cagcacacta aatcgtttta
    13681 ttaaagattc aactcatgaa ctcaataccc cattaagtgt tattttgatg agtatagaac
    13741 aacttgagca tcaaaattta ggagataatg ctaaatttac aaggattaag cttgctgcaa
    13801 aaagtttgtc tcaagtgtat tctgatcttg ttttttataa tttccctaat accttagaaa
    13861 cagaaaaaca aaaatttgat ttaagaatac tacttgaaga aagattggaa tattttaaag
    13921 tattttttga gcaaaaaaaa attacactaa agcttgattt aaatcaagca aatatttttg
    13981 ctcctaaaag tcaaatttct aaattgattg ataatcttat aagcaatgct attaaataca
    14041 ataaaaaagg tggagtaatt tctataattt tgaaagccaa ttttttaagt attgcggata
    14101 caggttgtgg aatttcaaag tcaaatttaa atcatatttt tgatagatat acaagattta
    14161 ataccgatca aggaggattt ggtatagggc tttctttggt aaaaaaagtt tgtgatgata
    14221 atgatattaa gattatttgc gaatctgtag aaaatcaagg gagtgttttt aaattaaatt
    14281 ggtaatcagc aaggaaaatc cttgctgata agaggttaga gcagatatta catcattcct
    14341 cccatgccac ccattcctcc cataccgctc atatctggca tagtaggttt atcttcttta
    14401 atttcactaa ttgttgcttc tgtggttaaa agcatactag ctacagaaac tgcattgagt
    14461 aaagctactc tttctacttt aacaggatcg ataattccac tttcaagcat attaacatat
    14521 tcaccttttg cagcatcaaa tcctgtgttt tcatctttag cattttctac gctatttaca
    14581 accacacctg catcaaatcc tgcattttca gcaatttgtc ttaaaggtgc tcttaaagct
    14641 ctttcaacga tagctgcgcc aattgcttca tcaccctgta gatcaagttt gattttagct
    14701 tttgctttga taagcgctgc accaccaccg attactatac cttcttcaac tgctgcttta
    14761 gtagcgctta aagcatcgtc aacgcgatct tttttctctt tcatttcagt ttcagttgct
    14821 gcacctactt taataactgc aacaccacca cttaattttg caagtctttc ttgtaatttt
    14881 tctctgtcat aatctgaagt tgtttcagca atttgtgctt tgatttgatt gactctcgca
    14941 tcaatatttg ctttttcgcc tgcaccattt actatggttg tattgtcttt atcgatgatt
    15001 acactagaag cttgtccaag atcttgtata gtcgcacttt caagagttct tccaagttct
    15061 tcagaaatca cttctccacc tgttaaaatc gctatatctt caagcatagc ttttcttcta
    15121 tcgccaaaac ctggagcttt cactgctgaa atattaagaa caccgcgaag tttatttaca
    15181 accaaagttg caagcgcttc accttcaata tcttcagcga taattaaaag tggtttgcct
    15241 gttttttgaa tttgttctaa aaccggtaat aaatctttta aatttgtaat ttttttatca
    15301 aaaagcagga tataagggct tgaaagctct actgtcattt tttctgcatt agtgataaaa
    15361 taagggctta aataacctct gtcaaattgc ataccttcaa ctacatttaa ttcatcattg
    15421 attgattttg cctcttcaac agtgataaca ccatctttgc ccactttttc catagcatca
    15481 gcgattaaat ttccgatttt ttcatcagag ttggctgaga ttgtagcaac ttgtgcaatt
    15541 tcttttttat cttttacttc gcgagaaagt tttttaagtt ctgctactat agcttcgcaa
    15601 gctttatcca taccgcgttt tacctcgata ggatttgcac ctgctgtgat atttcttaaa
    15661 ccttctttga aaattgcatg agctaaaacc gttgcagtag ttgttccatc gcctgcttga
    15721 tcagctgttt tactcgctac ttctcttacg agtgaagcac ccatattttc aagactatct
    15781 ttaagctcta cttctttagc aacacttacg ccatctttag taatgcttgg agcaccaaag
    15841 cttttttgga ttaaaacatt gcgtcctctt ggccccatag ttacttttac cgcgtcatta
    15901 agttttttaa cgccctcata aagtttattt cttgcttcat ctgaaaaaat aatttctttt
    15961 gccatttttt atcctttttt ataaattatt ttaaaattcc taagatatca tctaaattta
    16021 aaactaaata ttcattatta tcaagtttaa tttctgttcc accgtattta gcaaacacga
    16081 ttttatcacc atttgcaata tcagtgattt ctttacttac tgctactact tcacccatta
    16141 aaggcttttc tttagcatta tctggtataa ttatgcctga ggctgttgtt ttagtttctt
    16201 ctacgcgttt aactagaaca cgctttccta aaggttgaaa attcattttt gtccatcctt
    16261 aaaaatattg attttagcac tcttttattt agagtgataa tatcatacta taaaaaatga
//
LOCUS       DAPOLW010000022        16299 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.022, whole genome shotgun sequence.
ACCESSION   DAPOLW010000022 DAPOLW010000000
VERSION     DAPOLW010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16299)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16299)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16299
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.022"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            60..3483
                     /locus_tag="ROE18_000517"
                     /pseudo
     CDS             60..3483
                     /locus_tag="ROE18_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344058.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(3714..4679)
                     /locus_tag="ROE18_000518"
     CDS             complement(3714..4679)
                     /locus_tag="ROE18_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HDX3650723.1"
                     /translation="MYRKELQILLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTRASDFLSAGSLFSEKKLLEIKTSKKIPTKDLKVLVELCKNNTDNFF
                     LLELYDESSKQSDIEKIFSPHFVRFFKANGAKEGVELLSIKAKQLGVEITQNALFTLF
                     TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFEKILKKQDFKSELEK
                     ILDNFNEIALINSLYNSFYRLFKIALYAKVNGKIDFKDLLGYTPPPQVGQNLSSQAFN
                     LKIEQYKEIFTLLLKCEYELKTNSKLVKKEFLISNLLKLARILKS"
     gene            complement(4672..6606)
                     /locus_tag="ROE18_000519"
     CDS             complement(4672..6606)
                     /locus_tag="ROE18_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HDX3650724.1"
                     /translation="MKEFLNSLSYGISSHEINNEFKQIFRELLTNHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLVITKRYGEAVLGMNIKTGLSTALKASQKSLKALPLGTILKIEN
                     ENNNIIEVLGHIDDESVDEKISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDL
                     RALPFCTIDPIHAKDFDDAIYFDTQKREIYVAIADVSEYVHAYSAIDKEARNRGFSIY
                     FPHIAIPMLPHPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSKRRFN
                     YDEVDEILIQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDKNLSLKS
                     TVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRNHLSADARKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALSDELNLRAEVDKLIIKAQKKAEYSSVNAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCENLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGLCIAKLDDEIKGADIILYDTRVNLLESVEVQIIEAD
                     IVMAKIYAKITQRLIKEENV"
     gene            6725..7747
                     /gene="ilvC"
                     /locus_tag="ROE18_000520"
     CDS             6725..7747
                     /gene="ilvC"
                     /locus_tag="ROE18_000520"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HDX3650725.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     TIGLREGSVSAVKAKNAGFEVVSVSEASKIADVIMILAPDEIQADIFNVEIKPNLSEG
                     KAIAFAHGFNIHYGQIVVPKGVDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIITEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
     gene            7751..8833
                     /locus_tag="ROE18_000521"
     CDS             7751..8833
                     /locus_tag="ROE18_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HDX3650726.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVSSVKP
                     DYFIDKQEDLISLNKDHYEIGIFQENEFDNNKSVSILEQKIQEIDDLNTSLNEQNLSN
                     VEQNLSLEQNQSLEQNFIPKDTNLTQDQNLTFDEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLALKFDFYMVHLPLAAINYNKPELDTLNPN
                     DSKERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEEAMRKLYEVLKNQNIFFVDSKTI
                     GNSKANKIAKELNVPYIQRDVFLDNEDDVNYVKKQLESAVKLTQKKSFVIAIGHPRKN
                     TFKALEQSKDLLKGVDLVYLSEIYGK"
     gene            8823..9596
                     /locus_tag="ROE18_000522"
     CDS             8823..9596
                     /locus_tag="ROE18_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HDX3650727.1"
                     /translation="MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSR
                     RMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITASMAAMPNTIGIFANGLDQIYPR
                     TNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
                     AKLALELNKPLYALPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLE
                     FCKKGVSVDEALKIYGQKVYEYELEGKISIEGLFIRVLA"
     gene            9593..9976
                     /gene="ruvX"
                     /locus_tag="ROE18_000523"
     CDS             9593..9976
                     /gene="ruvX"
                     /locus_tag="ROE18_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HDX3650728.1"
                     /translation="MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKN
                     LLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV
                     ANTRKKDGKLDSLSAFIMIKDYFAL"
     gene            10005..10844
                     /locus_tag="ROE18_000524"
     CDS             10005..10844
                     /locus_tag="ROE18_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HDX3650729.1"
                     /translation="MQNILSSFTQEKNVCVFANTLKISIEELEKEFLKQKLKFKKINA
                     YCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQSVLDMCAAPGGKSI
                     NLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKIL
                     LDAPCSTFAKIGFDLEKSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEEN
                     EEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDYDGFFIAKLR
                     KLC"
     gene            complement(11020..11517)
                     /gene="msrA"
                     /locus_tag="ROE18_000525"
     CDS             complement(11020..11517)
                     /gene="msrA"
                     /locus_tag="ROE18_000525"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDX3650730.1"
                     /translation="MKNIVLGGGCFWCIEAVFERLKGVIDTEVGYSGGKPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILILFFKIHDPTSIDKQGEDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPDQGYCQAVIAPKLQ
                     KIQSD"
     gene            complement(11558..12076)
                     /gene="ppa"
                     /locus_tag="ROE18_000526"
     CDS             complement(11558..12076)
                     /gene="ppa"
                     /locus_tag="ROE18_000526"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HDX3650731.1"
                     /translation="MNLNKIKIGDIPNKINAVIEIPYGSNIKYEIDKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            complement(12086..12664)
                     /locus_tag="ROE18_000527"
     CDS             complement(12086..12664)
                     /locus_tag="ROE18_000527"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HDX3650732.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVINTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFCNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERAIEPIVADMKELIKKIQSI"
     gene            complement(12661..14412)
                     /gene="aspS"
                     /locus_tag="ROE18_000528"
     CDS             complement(12661..14412)
                     /gene="aspS"
                     /locus_tag="ROE18_000528"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HDX3650733.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLITEGTIRPRGEGLVNPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVIKVAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFDLKFIDVIDIFTKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKKDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELKLIDPNALEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANNIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            14503..15363
                     /locus_tag="ROE18_000529"
     CDS             14503..15363
                     /locus_tag="ROE18_000529"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HDX3650734.1"
                     /translation="MQNKIDYKNIKKIGLVTRPNVSLDKEILKLQSILSIYKVELVLL
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSIFLEDRQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCMLCIDGQENYKMNDFKSIKVGLSDKNVALIHPKNRDYFQ
                     ILKEKLHWGN"
     gene            15363..>16299
                     /locus_tag="ROE18_000530"
     CDS             15363..>16299
                     /locus_tag="ROE18_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDX3650735.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIEVDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNFVSFLEDFKKDFNAYSQISNE
                     LNAILEEEKKVEELKELARAQIEKISSINPKIGEYEELLILKKKLSKKDKLEEAWSKA
                     ERIFELEKVVIEALNLSEVDASFFSECLNELRVICENQKMEDLDFDVEALLDRIENLS
                     YLIKRYESIENALEVLKQKKYELEHYENLSFEKKEL"
BASE COUNT         5654 a         2285 c         2762 g         5598 t
ORIGIN      
        1 tttatattat ttttaaatat aaacaagaaa atataaatat aaaaggaaag ggaatattta
       61 tgaataaaac tgcattaact aaaacataca caaaagatat acaaaattcc tgtttaaatt
      121 ctaaaaagat agttttatct ttagctacta tttctttttt ggcaagttgt actcatgcta
      181 cacttactcc tgaaataaaa acttacgaag agacaaatag acatgctaaa gctaggtcag
      241 gtcttcaatc tagaaattcg aataatgaga ctataaataa tttacaaact ttaactaaaa
      301 ctataagtgg caccggcaat actctagtta tagaaagtag tggaactatt actatttcta
      361 atgatgggca acaagcagta aactttcaac caaattcttc aacttctacc tttttaaata
      421 aaggaactct tataggtgga aataatattg ctagtgttca actaggagca aatggaaata
      481 acggtgttaa catagaaacc tttgataatc aaggtatcat aggcaatggt tcttctaaat
      541 ttggagtaac agtttggggg ggggagtaaa gataacccta aatctataat caataatttt
      601 agtaatagtg gaactattca ctctaatact ggtgaaagta tttattttgg taacgcaaaa
      661 atatcaagtt ttgctaataa tgggactatt aagagtaaac aaggcacagg agtaaatata
      721 tctcaaggaa caagtataga gaattttaac aataccggaa ctattgaagg caagagaatg
      781 ggtgtaaatg ttcgttcaac aataaatacc ttcgtcaatg acggtttaat tgctgcaacg
      841 aacgatggaa tacagataaa tgctaatgta aaaacattaa taaataaggg aaccataaaa
      901 ggagatgcta tatctataag atcattaggt ggaactatag aaacattgac caatgaaggc
      961 attatgtatg gtaaaagtgc tggtatttac atgagcagaa gtcttgttaa aactcttaca
     1021 aatagcggta ccattaatca aaacaattcg gcaacttggt ctgctggtat aaaactcgaa
     1081 aatggtagta tcatagaaaa tatcatcaac acaggatcta tccgttctaa tgcttttgga
     1141 atatctgtaa ctggtggtaa atttggaaca cttaccataa aagatggagg tatggtttat
     1201 ggaaaatact cggcaatagg agtgggtcga tcgcaaactc taggagattt atatatagat
     1261 ggaagttcaa gtaatggcac agtaagtgga atttatagtg aagaacatgg aattttatta
     1321 gagaataact cacgaactca aaaaatagaa cttaaaaacg gtggcattat aaaaggtaag
     1381 atcgatggta taagattgac agactcggcc tctttaagtg gagaaatgat tttatctggc
     1441 gaaggttcta gggtagaagg tggaagaggt gttggtatat tgaatcgaag tggaaaaata
     1501 acaggctcta taaccataaa agatggagca actgttacgg ctacttcgaa tcgagccata
     1561 gttaactatc gctcaggaag tataacaggt ggtattactg ttagtgggga aaatactaaa
     1621 cttcaaggaa atataatcaa tacagataat gcttctatag gtagtgatat caagatagaa
     1681 ggtggagcta aggtagaagg tggtcttgtt aatcaaggta atggaagtat ctcaggaagt
     1741 gttcaagtaa gtggtggtag tagtattgat tccattacca atgagggtaa tggagctatt
     1801 tctggttcaa ttactgtaga taaagatagt aaacttgatt ctatcactaa cacttctaca
     1861 tcatctacag gtataagtgg ttctattact aacaatagtg ataataaact tgaaatttct
     1921 aattcaggta atatcggtgg taagattgaa agtacaggta gtgctgatat ggtgattagc
     1981 aatagtaatg gtggaactat tagtggcggt attagttctt caggaagtgg aagcactagt
     2041 atttccaatt cacaaggctc aaccataaat aacggcatca ctgtttcagg atcagcacaa
     2101 gttgaaatct ccaatcaagg ctcagtaggt aaagatgaaa atggtaatac agtaactaac
     2161 aatggtagtg gtagtgttgg aatcaaagat tggcttgttt ctacagataa aaacacaggt
     2221 aaattaaaca ctgtggttat aggtggaagt ggagctttta atgtaaaagt agaaaacatc
     2281 accgtagatc aaagcaatgt tgatcttgaa gagctaaacg atataaacaa catcatctca
     2341 ggtgttaatc aaaacaatat tggcaatata ggaaccaatg gaagtggaga aatatcttta
     2401 agctatgatc caataacagg aaagcttact acagatttta atcttaatgc ttccatatca
     2461 ggtgcaacct ttagatcttt aatctctact acttcaagaa gatcaacctt tatagataat
     2521 gttatgggta attctatgca aagctttgct ttagcttctt caagtaaatc tcaaagcatc
     2581 gctatgtctg aaaagggtaa tttatatgca gatgcaagtg attatataaa gagtgattta
     2641 aataatggaa gctatggttc taataaagaa cattctttat tcatccttcc ttatacttct
     2701 tcacagaatg ttgaactttc tttaaatgaa gaaagtaaag gacacactaa aggaaccatt
     2761 ataggttatt ctactttaaa agacagtgga atatatggtg tgtatgcagg ttatgaagat
     2821 acaaaaatgg gttcaactta ttttgatatt aataatagaa cctattatgc aggtttaaaa
     2881 tactttaata ccttatttac tacagaaaaa ggtcaagaag tttatatcaa agctcaaggt
     2941 aaagctgctt tgattaaaaa tgatttaact gaaaaaatag gaaataatga agctaaagct
     3001 gaacctaatt cttatgctta tggagtcaat acagccttag gtatgaattt tatttctaat
     3061 aaagatatat tctctcctga aataggtctt gcttatgaag gaggttatac tgaagctttt
     3121 tctatgaaag acaccatagg acaagcaaca gttaaaggtg gagaaagaac ctatgcaaac
     3181 tatttaaatc ttttctctac taaaacaagt cttacttggt ttagagattg gttgcctaat
     3241 ttaaaaactt cagtagaact tggagctaag tttaatatca atcctaaagt agaagctgag
     3301 gctagatttg gtaatataaa agtaagtgat gagtttgatt taccaagagt acaaaaattt
     3361 gtaagcactt cttttatcgt tcctgttaat gaagctttct attttagttt aaactataat
     3421 ggaatgtttg ataaagatgg caatacccat acaggatttg ctcagtttaa ttatctttgg
     3481 taatcttata aaagataata cttagtttaa ttagtttact ctcctacttg ttaaaaattt
     3541 catcctgata attttaaaat tattaggatg gatgttttta aggttattaa actcttttta
     3601 gattgcaatc attcttttaa agtattttaa aaactcagtt aagattaaca atacaatcat
     3661 tttaaattat tttaatacga ttaaaagaag tgaagaggat tgaagagtaa aaattaactt
     3721 tttaaaatcc ttgcaagttt aagcaaattt gaaatcaaaa attctttttt tacgagctta
     3781 gaattggttt taagctcgta ttcgcattta agcaaaagag tgaaaatttc tttatattgt
     3841 tcgattttta aattaaaggc ttgagagctt aaattttgtc ccacttgagg aggtggagta
     3901 tagcctaaaa gatctttaaa gtcaatttta ccattgactt tagcataaag tgcgatttta
     3961 aacaaacgat aaaaagaatt atacaaagag ttgattaaag caatttcatt aaaattatct
     4021 aaaatttttt caagttcgct tttaaagtct tgttttttta aaattttctc aaaaaagctt
     4081 tcaaaacttc ctgtattcaa actatagcag tattgttcta tggttttttc atctactctt
     4141 aaaccactaa atttattaag ctcactcgca gcaagatata agttttcatc aaaacttgta
     4201 aaaagagtaa ataaagcatt ttgagtgatt tcaaccccta gttgttttgc ttttatgctt
     4261 aaaagctcca cgccttcttt agctccgtta gctttaaaaa atcttacaaa atgaggagag
     4321 aaaatttttt ctatatcgct ttgtttagaa ctttcatcat aaagctctaa aagaaagaaa
     4381 ttgtccgtat tgtttttaca aagttcgact aaaactttaa gatcttttgt tggaattttt
     4441 ttagaagttt taatttcgag taattttttt tcactaaaaa gcgatcctgc gcttaaaaaa
     4501 tcactcgcac gagtgaagtt gtattcttca aaaaaaagtt tcaaagtttc atcgggctta
     4561 tatttttctt ttataaattc agcataaagt tcgctttgaa aattatctgc tccataaaga
     4621 aaaaaaaaat taggtattga atctttagaa agtaagattt gaagctcttt tctatacatt
     4681 ttcttccttt ataagtcttt gggtgatttt agcataaatt tttgccataa ctatatccgc
     4741 ttctatgatt tgcacctcaa cactttctag caaatttaca cgcgtatcat aaaggattat
     4801 atctgctcct ttgatttcat catctagttt agctatgcaa agtccatcat tttggacaac
     4861 taaagcttta aattttttgc ctatattttt agctgcccat ctagcaaatt ttctatccat
     4921 aaaatcaaaa gcaaccttat ccgcctctct ttcaagtgtg ctaagattct cgcaagtgct
     4981 ttctatgttt aaaagtagat aattaaaaag tttttcatcg tttttttgct tggcttttaa
     5041 aagtctgtgc aaaataagat cagaatacct tcttataggg cttgtaaaat gtgagtattt
     5101 atcaaaacct aagccaaaat gtcccgcatt tacgctagaa tattccgctt ttttttgtgc
     5161 tttgatgatg agtttatcta cttctgctct taaatttaac tcatcggata aagcttgtat
     5221 gtcgcgtatg agttcaggaa gattgggttt aaaatttaca tcgattccga gttcgcgtaa
     5281 ttcatttaaa agcttatcga tttttcttgc atcagcactt aagtgatttc taaaaacacc
     5341 tatatctatg agttttgctg cggctttatt ggctaaaagc atacaatctt cgatcaaatt
     5401 atgcgaaggc gtgtcttttt caaaaactgt gctttttaga cttaagtttt tatctagatt
     5461 cattcttaat tcttcggtgc gaaattcaaa ggcattttta agacgcattt tgcgtaaatt
     5521 ttttgtgatt tcaaaaagct cataaagcca tgaaagctct tttaaatcag gtttttgtat
     5581 caaaatttca tcaacttcat cataattaaa acggcgtttt gaattgataa taccttcaaa
     5641 aagttcttct tttatgactt tattttcatg atcgagtgtg attttaaaac aatacgctaa
     5701 gcgatctaaa tgaggtttta aagaacagat attttcactt aaaggatgcg gtaacatagg
     5761 tatagcaata tgtggaaaat aaatagaaaa tccacgattt cttgcttctt tatctatagc
     5821 gctataagca tgaacatatt cgctaacatc agcaatagct acataaattt ctcgtttttg
     5881 agtgtcaaaa taaatcgcat catcaaaatc ttttgcatgt ataggatcta tggtgcaaaa
     5941 aggcaaggct cttaaatcca tgcgattttc atacatactc gcatcaacac tatcgccgtt
     6001 tgctagagct tctttaatgc aagcatcgct aaattcgttg tttttattga aaagggctaa
     6061 agagattttt tcatctacgc tttcatcatc gatatgtcct aaaacttcta tgatattgtt
     6121 attttcattt tctattttta aaattgtccc taaaggtagt gcttttaagg atttttgaga
     6181 agcttttaag gcagtgctta atcctgtttt gatattcatt ccaagcacgg cttcgccata
     6241 ccttttggtg atcactaaag aggtttcatt ggctcttttt agaaccaaaa tcacctttgc
     6301 actggggcgt tttttcttta aaggtagaag ttttactgcg actatatctt tatagtttgc
     6361 gccttttagg tttttgtttt ctatcaaaag atcttttttg aaactttcat caaagcattg
     6421 taaaaaacct gtgcctttac tcgaaatatc aagtactcca aaggcaaaac cattgttaag
     6481 atagtatttg tttttgtgtt ctttaatgat atgattggtt aaaagttctc tgaaaatttg
     6541 tttaaattca ttgtttattt cgtgagagct aatgccataa ctaagactgt ttaaaaattc
     6601 tttcactttt gatactttat gattttttgt aaaattctta cataaagttt ataaaaaaaa
     6661 tatgaaattt atactttaat tgctataata atacctttaa tttttgaatt tttaaggagt
     6721 gaatatggct attacagtat attatgataa agattgtgat ttaaatttaa tcaaatcaaa
     6781 aaaagtagca attataggct ttggctctca agggcacgct catgcgatga atttaagaga
     6841 taatggcgta aatgtaacta tcggacttcg tgaaggtagt gtaagtgctg ttaaagcaaa
     6901 aaatgctggt tttgaagtgg tgagtgtgag tgaggcttct aagatagcgg atgtgattat
     6961 gattttagct cctgatgaaa ttcaagcaga tatttttaat gtcgaaataa aaccaaattt
     7021 aagtgaaggc aaggctatag cttttgcaca cggttttaat atccattatg gtcaaattgt
     7081 tgttccaaaa ggtgtagatg ttatcatgat agcacctaaa gcaccaggtc atacagtaag
     7141 aaatgaattt actctaggtg gtggcactcc ttgtttaata gctatccatc aagatgaaag
     7201 caaaaatgct aaaaatttag ccttaagtta tgcaagtgcg atcgggggtg gacgtacagg
     7261 tattatagaa acaaccttta aagccgaaac agaaacagat ctttttggtg agcaagctgt
     7321 gctttgtggt ggacttagtg ctttgattca agcaggtttt gaaactttgg ttgaagcagg
     7381 ttatgaacct gaaatggctt attttgagtg tttgcatgaa atgaaactca ttgtggattt
     7441 gatttatcaa ggtggtattg cagatatgcg ttattctatt tcaaatactg cagaatacgg
     7501 cgattacatc acagggccaa agattatcac tgaagagact aaaaaagcga tgaaaggtgt
     7561 tttaaaagat atacaaaatg gtgtttttgc aaaagatttt atcttagaac gccgtgcagg
     7621 ttttgctaga atgcatgcag aacgcaaaaa tatgaatgat tctttgatag aaaaaacagg
     7681 acgcaatttg cgtgctatga tgccttggat cagtgctaaa aaattagtag ataaagataa
     7741 gaactaaaca ttgtcaaaga aaaaattagt tcaaattcag cgttatttaa tcatagctat
     7801 acttttttta ctttgcatag ctttagcttt gggaatttta gtaaaatatc aaaattccca
     7861 agatgtttct tctgttaagc cggattattt tattgataag caagaagatt taatttcatt
     7921 aaataaagat cattatgaaa ttggtatttt tcaagagaat gagtttgata ataataaatc
     7981 tgtaagtatt ttagagcaaa aaattcaaga aattgatgat ttaaacacaa gtttaaatga
     8041 gcaaaattta agcaatgtag agcagaattt aagtttagag caaaatcaga gtttagaaca
     8101 aaattttatt ccaaaagata caaatttaac ccaagatcaa aatttaactt ttgatgaaga
     8161 tattcattta aataaaattt ctaaaaaacc aaaacttgct attattatcg atgatatggc
     8221 aaatgcaagt caggttagag gtttaaaagc tttaaattta aagttaaatc cttctttttt
     8281 tccgccagat aaaaaccata gcgaaacgcc aaaacttgct ttaaaatttg atttttatat
     8341 ggtgcattta cctttagcag cgattaatta caataaacct gagcttgata ctttaaatcc
     8401 aaatgatagc aaagaaagaa tttttaaaaa aatcaagcaa attaaaaaag attttaagga
     8461 tttaagatac atcaataatc acacgggaag tttatttaca agcaatgaag aagctatgag
     8521 aaagctttat gaggttttaa aaaatcaaaa tatatttttt gtagattcta aaactatagg
     8581 aaattctaaa gcaaataaaa tagccaaaga gttaaatgtt ccttatatac aaagagatgt
     8641 gtttttggat aatgaagatg atgttaatta tgttaaaaaa caacttgaaa gtgcggtaaa
     8701 acttacacaa aaaaaaagtt ttgttatagc cataggacat cctagaaaaa atacttttaa
     8761 agctttagag caaagtaagg atttgttaaa aggcgttgat cttgtgtatt tgagtgaaat
     8821 ttatggcaag tgaaattttg cctgatgaat ttttagagct ttttcaagat ttaaaaaagc
     8881 ctcctaaaaa attacactat aaaggaaatt tatctttatt aaaacaagat aaaatcgcta
     8941 ttataggttc aaggcgtatg agtgtttata cgaaaaattg tgttttttcc ttagcgagta
     9001 tgcttaaaaa tgctcatctt tgcgtggtaa gtggcggtgc tttgggtgtg gatatcaccg
     9061 caagtatggc agctatgcca aatactatag gtatttttgc caatggttta gatcaaattt
     9121 atccaagaac taatgaaaaa atcattaaac aaatttatga aaatgcttta gctttaagtg
     9181 aatacgaaga tgattatttg ccaaaaaatt atgatttttt actaagaaat cgtttggtta
     9241 ttgctttaag taaagccgtt gtggttgcac aagcagatat aaaaagtggt tctatgcaga
     9301 gtgcaaaact tgctttagaa ctcaataaac ctttatatgc tttaccacaa agactagaag
     9361 aaagcacagg aactaatttt cttttaaagg aaaataaagc aaagttaatt tgtgatttta
     9421 aagaatttgt aagtgagttt gcaagtatag atataaatca agatgaattt ttagagtttt
     9481 gtaaaaaagg tgtgagtgtt gatgaggctt taaaaattta tggacaaaaa gtttatgaat
     9541 atgaacttga gggaaaaatt tccatagaag ggctttttat aagggtttta gcatgagagc
     9601 tttggcttta gatgtaggtt taaaacgcat aggtgtagcg ctttgcatag ataaaaagat
     9661 cgctttgcct ttagatgcag ttttaagaaa aaatcgcaat caagccgcta atgaaatcaa
     9721 aaatttactt aaaatacatg aaatttcttt acttattgta ggcattccta agggcggatc
     9781 aagtgaagaa gaaatgacaa gacgcattaa gcattttgtt tctttgcttg aatttgataa
     9841 agaaatttgc tttgtagatg aaagcggaac aagcaaagaa gctttaggat acggcgtagc
     9901 caatacacgc aaaaaagatg gtaaattaga ctctttatcc gcttttatca tgataaagga
     9961 ttattttgct ctctagaata gaaaaacttt ataccaaaga tgaaatgcaa aatattttat
    10021 cttcttttac tcaagaaaaa aatgtttgtg tatttgcaaa tactttaaaa attagcattg
    10081 aagaattaga aaaagaattt ttaaaacaaa aattaaaatt taaaaagatc aatgcttatt
    10141 gttatttgtt tgatgccaaa gataaggcta tcttaagttc tatgaaagct tttaatgagg
    10201 cgcactttta tatacaaaat tattcttctt atttgtgtgc tttaaattta gaggtcaaag
    10261 cagggcaaag tgttcttgat atgtgtgcag ctccgggtgg caaaagtatc aatcttgcaa
    10321 attttatgca aaatacaggt tatttagctt gcaatgagat gagtagggat agatttttta
    10381 ttttgcaaaa aaatcttaaa aattacggcg tgaatgctaa agtttttatg aaagatggta
    10441 aaaatatagg caatttatgc cctttaaaat ttgataaaat cttacttgat gcaccttgtt
    10501 caacttttgc taaaataggt tttgatttgg aaaaaagtta taaagaaatc aaaaatattg
    10561 caaaaactca aaaaaaactt ctacattctg ctttaaaggc attaaaaata ggcggagagc
    10621 ttgtatatag tacttgcacc tttaccaagg aagaaaatga agaagtgata gagaatgctt
    10681 taaaaagtga gtttaaatta gagcttttag atattgattt ggaaaatgtt gaggctaaag
    10741 cagggcaaag tgaagaattt gctgaaattt caaaatgcag acggatttta ccaagcttag
    10801 actatgatgg attttttata gctaagctta ggaaattatg ttaattgata aaattattca
    10861 catttaaata caaattcata aaaaaactta aaaaacaata aataattttt tctttatttt
    10921 aaagcttaaa gttctatttt taagtacttt gaaaagaaaa tcacagcgtg aaaaggctgt
    10981 gaataaagtt gaattttttt taaccttaaa aagatgaaat tagtctgatt gtattttttg
    11041 cagttttgga gctattacag cttgacaata tccttgatcg ggattattta taaaataatg
    11101 ttgatgatag ttttcagctt tatagtaagt ttgcaatctt gaaattttag taactatttt
    11161 tttactaaat attttttgct gttcttcaat gaaattttga gctaaaattt tatcttcttc
    11221 attttcgtaa aatattattg agcgatattg tatgccaata tcttcacctt gtttatctat
    11281 acttgttgga tcatgaattt taaaaaagag tattaggatt tcaagaagag agatttgttt
    11341 ttcatcgtaa tttattttga caacttctat gttaccatca ccattacaca cgctttcata
    11401 gctaggattt ggttttcctc cgctatatcc aacttcagta tcgattacac cttttagacg
    11461 ttcaaatacg gcttcaatac accaaaaaca accaccacct aaaacgatat ttttcattgc
    11521 gagttttcct tgagtttagc cctttgaagg gctaggatta tttgtagttt ttgattgctt
    11581 tttctaaaat ttcaattgca gctttttcat ctttgaaatc ttgcacttta acccatttat
    11641 ttggttctaa aattttataa gtttcaaaga aatttttgat tttatttaaa gttgcttgtg
    11701 gtaaatctgt gtaagttttt atattgtcat atcttgcatc tatttttgaa tttggaaccg
    11761 caagaagttt ttcatccatt ccgctttcat cttccatgat taaaacaccg attaagcggc
    11821 aaggaatcac agctccagct tggataggat attcattaag cactaaaata tctacaggat
    11881 caccatcatc agccaaagta ttagcaataa aaccatagtt tgctgggtaa aacatcgcgc
    11941 tagccataac gcgatctacc atgatagcac cgctatcttt atcgatttcg tattttatat
    12001 ttgagccata tggaatttcg attacggcat tgattttatt tggaatatct ccgattttga
    12061 ttttgtttaa attcattttt tctccttata tactttgaat ttttttaatc agttctttca
    12121 tgtctgcaac gataggttcg atagcgcgct ctccatcgat aataaaatga agttttttct
    12181 tttgataaaa atctaaaatt tcatttaaag gttctgtata aactttcatt ctattgcaaa
    12241 acacttcttc attatcatct gcgccacgat ttctgcctaa aactctttct ttggcaactt
    12301 cttcgcttac tcttacttct atgacgcctt taagacaaat ttcattttgc tcacttaaaa
    12361 ccttatcaaa ttccatcatt tgctctacgc ttcttggata gccatcgatg atgatagttt
    12421 tagttggagc agcttttaga gcacaaacta tagtatttat aacaacatct aaaggaacaa
    12481 gattgccttt ggagataaaa ctatctatag tttttccaag ctcgctccca cttgctactt
    12541 cagctcttaa aagatctcct gttgaatagt gtgtgatatt tgtcgcatct gcttgtgcga
    12601 ttaaactagc atcggtagtt tttccactac ctggtgcacc tatgattaaa aacaattctt
    12661 tcattttata ttctccctta atttgattcc taattctctc attgcttcat tgctagcagg
    12721 cgatggtgca tctgtcatta agcattgcgc tctttgggtt tttggaaagg ctataacctc
    12781 tcttatgttg tttgctcctg taactagcat gatgagtcta tcaagtccta tagcgatacc
    12841 tccatgtggt ggagcaccaa aacttaaagc atcaagcaag aagccaaatt tttctttttg
    12901 ttgttcttca tcgatattta aaagtttaaa tactttttgt tgaatatcat ttttatggat
    12961 tcttatacta cctccaccta gctcaacgcc atttaacact acatcataag caatagatga
    13021 aatttcttct aaatcagtct catcaatatt ttttggcatg gtaaaaggat ggtgcatcgc
    13081 agaataactt ccgtcatcat tttgctcaaa cataggaaaa tcaacaaccc ataagaattc
    13141 caaggcattt ggatctataa gttttaactc gttggctaag aaaattctaa atcttcccat
    13201 ataatcaagc acggtttttt tagctcctgc accgaaaaat accacatctc ctacttcaag
    13261 ctcacagcgt ttgcttagct catttaaatc ttcttcgcta aagaatttac aaagtggacc
    13321 tttaagccca tcttttttaa cttgtatgaa agctaagcct tgggcgccaa atttacgcac
    13381 aaattcttca aatctttgca tttgtctttt tgaaaaaata gtatcgcctt ttggaacgcg
    13441 tatggctttg atgcgatttt tctttgtatc tttggcaata tttgcaaaaa tttcattatt
    13501 tgacttagtg aaaatatcaa tcacatcaat aaatttaaga tcaaatctta aatccggctt
    13561 atcagagcca taattttcca tagcgtcttt gtattgcatt tgtctaaaag gggtttgaat
    13621 ttctttgccg caagctttga aaatatcttt taaaaaagtt tcagctacct tgatcacatc
    13681 tttttgttcg caaaagctca tttcaacatc aatttgtgtg aattcaggtt ggcgatcagc
    13741 tcttaaatct tcatctctaa aacattttgc aatttgaaaa taacgatcaa aaccgctaca
    13801 cattaaaagt tgtttgaaaa gctgagggct ttgtggaaga gcataaaatt caccctgatg
    13861 cacacgagaa ggcacgagat aatctcttgc gccttcggga gtagctttgg taagaatagg
    13921 ggtttcaact tctaaaaatc ccatatttgc caaagaattt ctagctgcta tacaagcttt
    13981 agaacgcaag gcaaaatttt cataaagttt aggatttctt aaatctaaaa agcgatattt
    14041 taagcgtaat tcttcattta cactttcatc agcgatagca aaaggaggta cggcactttc
    14101 attttctatg gtaagtttag aaacaactac ttcgatttct cctgttttta acttaggatt
    14161 tacaagtcct tcgccacgcg gacgaatagt accttctgta ataagtacaa attcatttct
    14221 tgcattggaa gcgatttcat gagcttcttt actatcattt ggatcgcaaa caagttggat
    14281 aataccgctt ctatctctta aatctataaa aataactcca ccatgatcgc ggtagctatt
    14341 tacccaaccg caaagtttaa cgctttgacc aacatgggaa attcccaagt ctgtattata
    14401 atgacttcgc aaatttattc cttgaaaaag attttttaag ataatgagca aaattatagt
    14461 atttttattc ttttgctttg ctaagatttg atataatttt ttatgcaaaa taaaatagat
    14521 tataaaaata ttaaaaaaat tggacttgtt acgcgaccca atgtgagttt agataaggaa
    14581 attttaaaac ttcaatcgat tttatctata tataaagttg aacttgtatt gcttaaagaa
    14641 agttctgaaa ttttagattt gccaaagtat ggattggatg atttgtttaa aatatccgat
    14701 tttgttattt ctttaggtgg agatggaact ttgatttctt tatgccgtaa agcttgtgaa
    14761 tatgataaag cagttttagg aattcatgct ggacatttag gttttttaac agattttaaa
    14821 gttgatgaag ctgaaaattt ttttcaagct ttttttcaag gagaatttag aatagaaaag
    14881 ccttatttgt taagtatttt tttagaagat aggcaaggaa aaattttaga aaaattggct
    14941 tttaatgatg tggttatcag taaaaacaat caagcttcta tggctcatat agaagttttt
    15001 agaaaagaaa agaaatttaa tgaatatttt ggagatgggc ttattgttgc aactcctgcg
    15061 ggttcaacag cttataattt aagtgcaaat ggacccatag tttatacttt agctcaagct
    15121 tttatcttaa ctcctgtttg ttctcattct ttaacacaac gccctattgt cttgccaaaa
    15181 ggttttgaaa tagagattat ggcaaaggat tgcatgcttt gcattgatgg gcaagaaaat
    15241 tataaaatga atgattttaa aagtataaaa gtgggtttaa gtgataaaaa tgtggcttta
    15301 attcatccaa aaaataggga ttattttcaa attttaaaag aaaaattaca ctggggaaat
    15361 tgatgataaa tagaattttt atgaaagaaa atcttggttt taaaaaggct gagcttgaaa
    15421 tttctaaagg gcttaccgtt tttacaggcc taagtggagc tggaaaatcg gtcttgttta
    15481 aaggaatttt atccgcattt tctttgagtg aaagtgaggc taaaattgtc gaaatagaag
    15541 tagatgataa gttggattta gaaagttttg gtatagaaag tgaagaggag aatgttttta
    15601 agctcttaaa agaaaaaaac acaaaatatt ttattaacaa tcaaagcata gcgaaaaaaa
    15661 gtttgcaaaa tttaagtaaa acttttatta agtatttaag cgcaaaggaa aataacgaat
    15721 ttggaaatga aaaattttta aatctcttag atgccttgga gatgcaagaa aatacaaatt
    15781 ttgtttcctt tttagaagat tttaaaaaag attttaatgc ttatagtcaa atttctaatg
    15841 agcttaatgc aattttagaa gaagaaaaaa aagtagaaga attaaaagaa ctagctagag
    15901 cacaaattga aaaaatttca agcattaatc ctaaaatagg tgagtatgaa gagcttttaa
    15961 tacttaaaaa aaagctttct aaaaaagata aattagaaga agcttggagt aaggcagagc
    16021 gtatttttga gcttgaaaaa gttgttattg aagctttaaa tttaagcgaa gttgatgcga
    16081 gtttttttag tgaatgttta aatgaattgc gtgtgatttg cgaaaatcaa aaaatggaag
    16141 atttggattt tgatgtggag gcgcttttag atcgcattga aaatttatcc tatcttatca
    16201 agcgttatga aagcatagaa aatgctttag aagttttaaa acaaaaaaaa tatgagctag
    16261 agcattatga aaatttaagt tttgaaaaaa aagaacttg
//
LOCUS       DAPOLW010000023        16216 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.023, whole genome shotgun sequence.
ACCESSION   DAPOLW010000023 DAPOLW010000000
VERSION     DAPOLW010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16216)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16216)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16216
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.023"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            32..793
                     /locus_tag="ROE18_000531"
     CDS             32..793
                     /locus_tag="ROE18_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HDX3650736.1"
                     /translation="MRFDFFVSKRLNISRNKALELIENEEILLNGKSFKASFDVKNFL
                     ENLKKTQDLNLEDILLANELKLDLLSEIYVSRAALKLKNFLEENDIEIKHKNCLDIGS
                     STGGFVQILLENQALKITALDVGSNQLHSSLRVNEKIILHENTDLRAFKSEEKFELVT
                     CDVSFISLINLLYYIDNLALKEIILLFKPQFEVGKNIKRDKKGVLKDDKAILKARMDF
                     EKACAKLGWLLKNTQKSSIKGKEGNVEYFYYYIKN"
     gene            759..1613
                     /locus_tag="ROE18_000532"
     CDS             759..1613
                     /locus_tag="ROE18_000532"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HDX3650737.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKCLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFESIKSLDGRDFLSFLKKEFVNLKFIVVGYDF
                     SFGKNRAYNAKDIESLSGIKTIIVDEFSIDGIGVHASLIKDFLSKANLQKAKEFLGRD
                     YSIKGKMIKGQGLGSKELFATINLDCEGYFLPQNGVYVTLLKSQRKTYKSVSFLGVRS
                     SDENFAIESHILEELGENFTQGEFFELEFISFLRENQKFQDLKKLKNQIAKDIEQARE
                     LLRKNDER"
     gene            1600..2310
                     /gene="cmoA"
                     /locus_tag="ROE18_000533"
     CDS             1600..2310
                     /gene="cmoA"
                     /locus_tag="ROE18_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HDX3650738.1"
                     /translation="MMKDELFKQSPKKQFEFDKSVASVFDDMINRSVPFYRENLELCG
                     NLLAKILPTNASVCDLGCSSANFLIFLANLRKDFKLFGVDNSASMLEVAKSKAKAYGL
                     DISFFEANLCEFDFFTCDVFVANYTMQFIRPPKRQELLDQIYKNLNSKGILIMSEKIL
                     YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKK
                     IESIFKWANFETFIAFKD"
     gene            complement(2300..2521)
                     /locus_tag="ROE18_000534"
     CDS             complement(2300..2521)
                     /locus_tag="ROE18_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HDX3650739.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYKIGFPKDEWEDENISNP"
     gene            complement(2518..2952)
                     /locus_tag="ROE18_000535"
     CDS             complement(2518..2952)
                     /locus_tag="ROE18_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HDX3650740.1"
                     /translation="MRRLSILLAILIVINITACDSKTENYYKNLPSEAKEKAKECKES
                     GTLSEDCINALKVGVKPTNEEGKYSPNTPKKSDNQILEALKQNDLKKEKTTKDINQSS
                     ENNESIIIPPIAETPSEIYPSKTTEDNQSSIFSDDVNMTQEK"
     gene            complement(3010..3642)
                     /locus_tag="ROE18_000536"
     CDS             complement(3010..3642)
                     /locus_tag="ROE18_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HDX3650741.1"
                     /translation="MEINALTITTLYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIILICFCALVATKIPRVVTKLETLFLTLDAIGL
                     VVFSILGAQIAIDQNHGFIIAVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGAIYYSLIIWLELNALVCTLLTLFIGVFARLLAIKYQWSLPIFSYNEEK"
     gene            complement(3653..4303)
                     /locus_tag="ROE18_000537"
     CDS             complement(3653..4303)
                     /locus_tag="ROE18_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HDX3650742.1"
                     /translation="MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFEDDTNIPKKYRTTWSNYKNSGYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
                     LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF"
     gene            complement(4300..4926)
                     /gene="nth"
                     /locus_tag="ROE18_000538"
     CDS             complement(4300..4926)
                     /gene="nth"
                     /locus_tag="ROE18_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HDX3650743.1"
                     /translation="MKRNLEIKELFLKHFDKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFDGEI
                     PLDEQNLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTRTFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            5007..5828
                     /gene="peb4"
                     /locus_tag="ROE18_000539"
     CDS             5007..5828
                     /gene="peb4"
                     /locus_tag="ROE18_000539"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HDX3650744.1"
                     /translation="MKKFSLVAATLIAGVVLNVNAATVATVNGKSISDTEVSEFFAPM
                     LRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVY
                     QEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGK
                     ELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK"
     gene            5828..6892
                     /gene="fbaA"
                     /locus_tag="ROE18_000540"
     CDS             5828..6892
                     /gene="fbaA"
                     /locus_tag="ROE18_000540"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HDX3650745.1"
                     /translation="MGVLDIVKAGVISGDELNKIYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKLD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKNAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMIKRLEIAFEDLNCINKN"
     gene            6987..8429
                     /locus_tag="ROE18_000541"
     CDS             6987..8429
                     /locus_tag="ROE18_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HDX3650746.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILILLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNVEEKA
                     IRLSSEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKIERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKENETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            8426..9379
                     /locus_tag="ROE18_000542"
     CDS             8426..9379
                     /locus_tag="ROE18_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDX3650747.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNSTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLS
                     KELQSKLDNNITIDEKIGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRS
                     FSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            9366..10241
                     /locus_tag="ROE18_000543"
     CDS             9366..10241
                     /locus_tag="ROE18_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HDX3650748.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFVSYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYALALE
                     NGVDFVENIHSLSLKQFALSLCKKDDVFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFAKPYKEFYELYMDLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     GNSTMLERYKFKKSV"
     gene            complement(10233..11576)
                     /locus_tag="ROE18_000544"
     CDS             complement(10233..11576)
                     /locus_tag="ROE18_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDX3650749.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENVIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPDFSKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLNKNENMAKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFVLLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGILN"
     gene            complement(11627..12295)
                     /locus_tag="ROE18_000545"
     CDS             complement(11627..12295)
                     /locus_tag="ROE18_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HDX3650750.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEETQIDFLGILDDQIAD
                     KIHHGGYHKAIFANSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDIHQFS
                     NAILQVSEPRKPCVKISKIHNNSNFTHEIFKTGLSGWYYKVLQVGQIRKYENIKILEK
                     NSTSLSVFELNQLFYSPHQALRQNPILLDKLEKLNSLISQNWHETIHKRLKNTYDISY
                     MDSL"
     gene            complement(12292..13995)
                     /locus_tag="ROE18_000546"
     CDS             complement(12292..13995)
                     /locus_tag="ROE18_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HDX3650751.1"
                     /translation="MRIFGIILLSFCLCFASILSLNEAFNVKSNSYNNSISIDIELGK
                     DIYLYSNKLKLYINEKDISSLINLPQSSTKGNENVYYQKLNLALPNLLLERFAKNTTN
                     LIKLEFQGCSEQGLCYNPQTWYFDLISKKDAFEISKPYKAQKTDKKTKIESEESSIAN
                     FLATDNFFWILLSFFGYGLLLSLTPCILPMIPILSSLIVAKSNAKFSKKYSFFLSFIY
                     VFFMSLAYAIAGVIASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPLRF
                     QTFIHKKSEKGKGVVGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSALFI
                     MSFGMGIPLLFIGLGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSRIIEENYILIAYG
                     ILGVFFSVFMGIFEKSFTIISKIKKSILILILAYSLSIFLGGLFGAKNFLNPLNFNTI
                     SASKHALSYDYINNFEQLKQEIQTNTKPIMLDFTASWCENCKLLDELTFSDERIIQKM
                     QNYKLIKVDVSENNNEQIKTMKEFNVFGPPVLIFFENGKEKLKITGFISADDLLKKIE
                     P"
     gene            14090..14971
                     /gene="ppk2"
                     /locus_tag="ROE18_000547"
     CDS             14090..14971
                     /gene="ppk2"
                     /locus_tag="ROE18_000547"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HDX3650752.1"
                     /translation="MQENNSPKAQAVVKKNEIYVSVKRKKSTIEYEKDLKNLQIELLK
                     FQNHVKAKGLKVLILIEGRDAAGKGGAIKRLIEHLNPRGCRVVALEKPSDVEKTQWYF
                     QRYIAHLPSAGEIVIFDRSWYNRAGVEPVMGFCTPQQHKDFLREVPLFENMISNSDII
                     FFKFYFSVSKDEQKKRFEKRRSDPLKQYKLSPVDQKSQELWDKYTLAKYSMLLASNTP
                     TCPWTIISSDDKKKARLNLLRFILSKVEYPNKKTGDFSKIDAKLVRSGEEEIRKMEAN
                     LEKLDSKKADEKIKDLD"
     gene            14980..16170
                     /locus_tag="ROE18_000548"
     CDS             14980..16170
                     /locus_tag="ROE18_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDX3650753.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTAHLVCKIL
                     DEFGIKYQKNIAKTGILAIIEGKKKSQKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVDAVFGCHLWGPLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMTT
                     QFVNNIQSVISRRLAPYEAGVITVGQICAGTTYNVIPTNAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAVLIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMALE
                     FLNL"
BASE COUNT         5921 a         2063 c         2750 g         5482 t
ORIGIN      
        1 acttagaaaa aagaataaat gagagtttaa aatgagattt gatttttttg tttcaaagcg
       61 tttaaatatc agtagaaata aagctttaga gcttatagaa aatgaagaga ttttacttaa
      121 tggtaaaagt tttaaagctt cttttgatgt gaaaaatttt ttagaaaatt taaaaaaaac
      181 gcaagattta aatcttgaag atatactttt agccaatgag ttaaaattgg atcttttaag
      241 tgaaatttat gtttcaagag cagctttgaa attaaaaaat tttttagaag aaaatgatat
      301 tgaaataaaa cataaaaatt gtcttgatat aggatctagt acgggtggtt ttgtgcaaat
      361 tttacttgaa aatcaggctt taaaaatcac tgctcttgat gtgggtagta atcaactcca
      421 ttcaagttta agagtaaatg aaaaaattat cttgcatgaa aatacagatc ttagagcctt
      481 taaaagtgaa gaaaaatttg aacttgttac ttgtgatgtg agttttattt ctcttattaa
      541 tttactttat tatattgata atttagcttt aaaggaaatt attttacttt ttaaacctca
      601 gtttgaagtg ggaaaaaata tcaaaagaga taaaaaaggt gttttaaaag atgataaggc
      661 aatcttaaag gcaagaatgg attttgaaaa agcatgtgct aaattgggtt ggcttttaaa
      721 aaatacgcaa aaatcaagca ttaaaggaaa ggaaggtaat gttgaatatt tttactacta
      781 tatcaaaaat taatattacc tctttagcca taggttgttt tgatggtatg catttaggac
      841 atctaaaact tgtaaaatgt ttagatgaga atggggcttt attagttatt aataaattta
      901 agggtcaatt tctttgttca aatcgtcaaa aagaagaaat ttcaggaaaa aaagttatag
      961 aagtggattt tgaaagtata aaatctttag atggtagaga ttttttaagc tttttgaaaa
     1021 aagaatttgt caatttaaaa tttatagtgg tgggatatga tttttctttt gggaaaaata
     1081 gagcttataa tgctaaagat attgagtctt taagtgggat aaaaactata atagttgatg
     1141 aatttagcat agacggaata ggtgttcatg caagtttaat taaggatttt ttatcaaaag
     1201 caaatttgca aaaagcaaaa gaatttttag gaagagatta tagtatcaaa gggaagatga
     1261 ttaaaggaca aggtttgggc tctaaagaac tttttgcgac tataaattta gattgtgaag
     1321 gttatttttt acctcaaaat ggtgtttatg ttactttgtt aaaaagtcaa agaaaaactt
     1381 ataaaagtgt gagtttttta ggtgtaagat caagcgatga aaattttgct atagaaagtc
     1441 atattttaga agaattgggt gaaaatttca cgcaaggaga gttttttgaa ctcgagttta
     1501 tatcttttct aagagagaat caaaaatttc aagatctaaa aaaacttaaa aatcaaattg
     1561 ctaaagacat agagcaagct agagaattat taaggaaaaa tgatgaaaga tgaacttttt
     1621 aaacaaagcc ctaaaaaaca atttgaattt gataaaagcg tggctagtgt ttttgatgat
     1681 atgatcaatc gttctgtacc attttataga gaaaatttag aactttgtgg caatttattg
     1741 gctaaaattt tacctacaaa tgcaagtgtt tgcgatttgg gctgctcaag tgctaatttt
     1801 ttgatttttt tggcaaatct aagaaaggat tttaaacttt ttggcgtgga taattctgct
     1861 tccatgcttg aagttgcaaa atcaaaagct aaagcttatg ggcttgatat aagttttttt
     1921 gaagctaatt tatgcgaatt tgattttttt acttgcgatg tttttgtagc aaattatacc
     1981 atgcagttta ttcgtcctcc taaaagacaa gaattgcttg atcaaattta taaaaattta
     2041 aactctaaag gcattttgat tatgagtgaa aaaatccttt atgaagatgc ttttttgtct
     2101 aaaaatatca tagaacttta tgctgattat aaagaaaaac aaggctattc taagtttgaa
     2161 atcgcagcta aaagagaagc tttggaaaat gttttaattc cttatagtca aaaagaaaat
     2221 ttaaatatgc tagaaaaggc aggttttaag aaaatagaaa gtatttttaa atgggcaaat
     2281 tttgaaactt tcatagcttt taaggattag aaatattttc atcttcccat tcatcttttg
     2341 gaaaacctat cttatatgca ttaacacaat cttgactaat gatagctttg tgtctgcatt
     2401 ctaaacttct tttttttgct tcctcggggt gattttgata atattctaca cttttggttt
     2461 gttcgcatgc tgcaaaaaat ataccaataa ggcttaaaaa aagagttatt ttcatggtca
     2521 tttttcctgt gtcatattaa catcatcgct aaagatagaa ctttgattgt cttctgttgt
     2581 tttggaagga taaatttcag aaggtgtttc tgctataggt ggtattataa tactttcatt
     2641 attttctgaa ctttggttaa tatcttttgt ggttttttct ttttttaaat cattttgttt
     2701 taaagcttct aatatttgat tatcagattt tttcggtgtg tttggactgt atttaccctc
     2761 ttcatttgtt ggtttaacac caacttttaa tgcattaata caatcttcgc taagagttcc
     2821 gctttctttg cattctttcg ctttttcttt tgcttcgcta ggaagatttt tgtagtaatt
     2881 ttctgtttta ctatcacaag ctgttatatt aataactatt aaaattgcaa gtaaaatact
     2941 tagtcttcgc atttatcaat ctcctaaaat ttttaatatc ttagcaaact tgtataaagc
     3001 aacgataaat tatttttctt cattgtaaga aaaaataggt aaagaccatt gatatttgat
     3061 agctaaaagc cttgcaaaaa ctcctataaa aagagttaaa agtgtgcaaa ctagggcatt
     3121 aagctcaagc caaattatta gagaataata gattgctcct gcaattatgg caattcctgc
     3181 ataaatttct ttttgaaaca ccaaggggat tctcatacat aaaatatctc ttaaaattcc
     3241 accaaaaaca ccggtaatta cagcggcagc aacggctatg ataaagccat ggttttgatc
     3301 tatagctatt tgagctccaa gtatgctaaa aacaacaagt cctatagcat caagagttag
     3361 aaataaagtt tcaagtttgg ttactacgcg cggaattttt gtggctacaa gggcgcaaaa
     3421 acagattaaa ataatatatt caggatgttt aacccaagtt aaaggataat gtcctaaaag
     3481 cacatctcgt atgcttccgc ctccaattgc tgttacgaga gcaataaaaa taactccaaa
     3541 aagatccatt ttgtggcgtc ctgcagctaa agctcctgtc attccttctg cggaaatacc
     3601 tatgatataa agagtggtta tcgtaagagc atttatctcc ataatttata ccttaaaatt
     3661 tatcacaatt tatttgatac tgtttaatat tttcatcatt tacttcgtgg tttggtgctt
     3721 gatagcattc tttaaatttc ggagttttaa taattttcac ataaaaactt ggtatagcaa
     3781 tacggttttt aatgtattgt ggttctttat cgtaaagtac taaatttaaa acttcgatac
     3841 tttgaaattc taaagctaaa tttctttctc tttgttcgat ttcattccaa attttattat
     3901 ttatttgtgc attttgtggg gtaatattac tcattaaaaa tactgaattt tgagcagctt
     3961 tactaaagct aaaagaagca ttgggtgcag tgtgtcctcg tgtgtaacca ctgtttttat
     4021 aattactcca agtagtgcgg tattttttag gaatatttgt atcatcttca aagcgagggc
     4081 gttttttgat ttgtctatct ttcaaatttg aagcttctac cttataagca acagcttttg
     4141 tgcctttgag tttataatca tagcaattta gataaaaaaa cttatctaag atttgcgagc
     4201 aatttatatt gttaaaataa gaagaaaaat cagcactagg cttgtaaggt tctaaggcaa
     4261 aaatattaag agatatagtg agtaaaaaga tgaaaatttt catttaagtt ccttatcttt
     4321 acttttgcaa agatgattta aaaagcattc tttacataaa ggttttttag ctttacaggt
     4381 gtaacgtcca aaaagaacca tggcttgatg aagatagtta agattatctt taaatgtgcg
     4441 tgttaaatct tcttctgtag cttctggagt ttttgctttg ctaagtccta agcggtgaga
     4501 aactctaaaa acatgagtat ctacagccat gaaatttgct ccgcaccatt ctattaaaac
     4561 tacatgagcg gttttttgtc ctacgcctgc taaggatttt aaattttgtt catcaagagg
     4621 aatttctccg tcaaaatttt cacaaactgc ttttgccatt tttataagat tttgtgcttt
     4681 attattaaaa aatgaacaag tttgtatata ggttttaaga cttgataaat ttgcatttgc
     4741 aagggattta atatcaggat aagctttaaa aagatcagga gtgatgagat taactctttt
     4801 atcagtgcat tgggctgaaa gcattacgca gactaaaagc tcatataaat ttgaaaattt
     4861 aagctctgtt acaggcttgt caaaatgttt taaaaaaagt tctttgattt ctaaatttct
     4921 tttcattttt taattttagt taattagctt taaaccaagt ttagatataa ttgattttat
     4981 atacatttta ttaaaaagga aacctaatga aaaaattttc tttagtcgca gcaactttga
     5041 ttgcaggtgt agttttaaat gtaaatgcag ctacagtagc tactgttaat ggcaagagca
     5101 ttagcgatac agaagtaagt gaattttttg cccctatgct tagaggacag gattttaaaa
     5161 ctttgccaga taatcaaaaa aaagctctta ttcagcaata tattatgcaa gatttaattt
     5221 tgcaagatgc taaaaaacaa aatttagaaa aagacccttt atacacaaaa gaacttgatc
     5281 gtgcaaaaga tgcaatactt gttaatgttt atcaagagaa aattttaaat actattaaaa
     5341 ttgatgcggc taaagttaaa gctttttatg atcaaaataa agacaaatat gtaaaacctg
     5401 caagagtgca agcaaaacat atcttagtag cgacagaaaa agaagctaag gatattatta
     5461 acgaacttaa aggtttaaaa ggtaaagaac tagatgctaa atttagcgag cttgctaaag
     5521 agaaatcaat tgatccaggt tcaaaaaacc aaggtggtga gcttggttgg tttgatcaat
     5581 caactatggt aaagcctttt acagatgctg ctttcgcgct taaaaatggt actattacta
     5641 caactccggt aaaaacgaat tttggttatc atgtaatctt aaaagaaaat tcgcaagcta
     5701 aaggtcaaat caaatttgat gaagtaaaac aaggtattga aaacggactt aaatttgaag
     5761 aatttaaaaa agttatcaat caaaaaggcc aagatctctt aaatagtgct aaagtggaat
     5821 ataaataatg ggtgttttag acattgtaaa agcaggggtg attagcggag atgagcttaa
     5881 taaaatttat gactatgcta aagcagaggg ttttgctatc cctgctgtta atgttgtagg
     5941 aactgattct attaatgcag ttttagaagc tgcaaaaaaa gttaactctc cagttattat
     6001 ccagttttca aatggtgggg caaaatttta tgcagggaaa aattgtccta atggagaagt
     6061 tttgggtgca attagtgggg ctaaacatgt acatttactt gctaaagctt atggtgtacc
     6121 tgtgatttta cacactgatc atgctgcaag aaaacttttg ccttggattg atgggcttat
     6181 tgaggcaaat gcacaatata aaaaaaccca tggacaagct ttatttagtt ctcatatgct
     6241 tgatcttagc gaagaaagtt tagaagaaaa tcttagcact tgtgaagttt atcttcaaaa
     6301 acttgatgct ttaggtgtcg cgcttgaaat agaattaggt tgtacaggtg gcgaagaaga
     6361 tggagtggat aatacaggta ttgataattc caagctttat acccaaccag aagatgtagc
     6421 tcttgcatat gaaagacttg gaaaaattag tgataaattt tcaatcgcag caagctttgg
     6481 aaatgtacat ggagtttaca agccaggaaa tgttagctta caacctgaaa ttttaaaaaa
     6541 ttcgcaaaaa tttgtaaaag ataaatttgc tttaaatagc gataagccta taaattttgt
     6601 atttcatggc ggtagcggta gtgagctaaa agatattaaa aatgcagtaa gctatggcgt
     6661 aattaagatg aatattgaca cagatactca atgggctttt tgggatgggg tgcgtgaata
     6721 tgaacttaaa aatagggctt atttgcaagg acaaattgga aatccagaag gtgatgacaa
     6781 gccaaataaa aaatactatg atccgcgtgt ttggttaaga agcggtgaag aaagcatgat
     6841 aaaacgtctt gaaatcgctt ttgaagattt aaactgtata aacaaaaact aagcatttta
     6901 aaagcttagt tttattttgt tttaaaaatt tttatcaaat taagtagcaa tctttaaaat
     6961 aaaattttta atgaggtatt ggtttcatgg atattaaatc agatgaaatt tcagaacttg
     7021 ttttgcctga aggcaaagat gcaagaggtt ctttggttta ttttaaaatt atttttattc
     7081 cagcttttct ttatattttg attttattgg gttattttaa tgtaattgac tttaaggtcg
     7141 aattacatac ggttattatg acaggtgtga ttttttttac agcattgatt tttgctagac
     7201 atagtgctga gtatgcgtat agtatttttg aacaacaaaa agatgaattt aaacaggctt
     7261 taaaaagaca tattatgagg cattttcttg ccatagggaa agacacgaaa tcaaatgcca
     7321 attttgatga ctttgcttat acatatatta agggtgcaag aaatgagaat tttgctagta
     7381 taggttcggc aatttttcca atgatgggaa ttttaggaac ttttatcagt atagcttttt
     7441 caatgccaaa ttttagttct agtgatacag ccgctttaga acaagaaatt gcagatttgt
     7501 taagtggagt gggaactgct ttttatgttt caatttatgg aatttttctt gcattatggt
     7561 ggatgttttt tgaaaaatat ggtaaaagca aaatagatcg tttgctaaat cgtcaaaaaa
     7621 acgctacaag tggatttttt tggacaaaag aagagcttga tcaaagatat ttaactgaaa
     7681 gtttgcaaca ttttgaaaaa attggagcaa tttttaaaca agttagtaat gatgattttt
     7741 ttgcagagct tgatcatgct attgatagaa agtttggtat tttccaagat atgctaaatg
     7801 tagaagaaaa ggctattaga ttaagtagtg aacatatcaa acaaaccatg ggtgagctta
     7861 gtaaagcaca aagagatcaa cgcgatcttg gaaagcttta tagtgaaatg ttaaatggta
     7921 taggtttgct caatcaaaat ttaaaagaaa tcaatacaag aatgtcagaa caatataatc
     7981 gcttgcttga tatcagtagt gataaaattc atcatcttga taagacacta agtgcattcg
     8041 atgaaaaaat agagcgtttt ggtaaaaatt ttgaacttta tgaaaaagca atgttggaaa
     8101 gtcaagaaaa ggtttttgag ggatttaaag caagcttgtt tgaaggtatg cataaattta
     8161 aagaagtata tgaagaagaa aaaagtattg atgctaaaat caaaatgatg gatgagctta
     8221 aaaaagaaat gaaagcactt gatgaagaaa caagtcaaat gatgagcaag ctttctgggg
     8281 atgaaaatca gaataaagaa aatgaaacca aacaaataga agatttttca gagtctaaga
     8341 ctgaagaaaa tcaagatgaa attcaagcag aaatatctaa gcaagaaagc aatgatgagc
     8401 taaaaaatga agataaagaa aataaatgaa aaatgagtca aaagaagata gcaatttttg
     8461 gatagcttat gctgatttaa tggcaggatt gctgtttgtt tttattttgc taataggtgc
     8521 tattgttgta aaatatgttt taactcaaag tgatttaaaa gaaatcaaag ataatctcaa
     8581 taaacaagag gcacgcttag aggagagtaa agaagagctt agaaataaag aagccatagt
     8641 gtttaaacta agttctgatt taaacaatgc ttctagtgct ttaaatcttg ctaattctca
     8701 aaaagcagaa ttagaggcta atattacaaa ttacaagcag ttaagtaaag atttaaactc
     8761 aactttagat aataaagata agcaaatttt gattttacta ggtcaactag agaaaaaaga
     8821 tgaagagctt aaaaatttac aagaagattt tcaaaaagct aaagaaaagg tgcaaaatct
     8881 tggtttgatt cgtgaaaatt taagcaagga attacaaagt aagcttgata ataatatcac
     8941 tatagatgaa aagataggat ctatttcttt gcctgctgaa gtactttttg ataaagattc
     9001 ttatgtgtta aaaaatgagg caaaggcaag tttgagaaaa atcttaagcg aatattttga
     9061 tgctattctt gaagatccaa aaattttttc taacattgaa aatatcatta ttgaaggaca
     9121 tactgatagt gatggatctt atatttataa tttagatttg tcgcaaaaaa gagcttatga
     9181 ggtgatgaat tttatctata ctttttataa gagtgataag cttcaaaagc ttttaatggc
     9241 aagtggacgt tctttttcag atcctgtgtt tgtcaacgga gttgaagata aggataagag
     9301 tcgtcgcata gaaataaaat ttagcattaa aaatgataat gctttaaagg atgtagaaaa
     9361 attctttgaa tttcattaaa acaattagtc ctatacaaaa aatcaatttt aacggatttg
     9421 aattttatat taaaagagat gatttattag gggaaattaa tggaaataaa gctaggaaac
     9481 ttgcttttta tatccatcaa agatatccta aaaatcaatc ttttgtaagt tatggaggaa
     9541 gccaaagtaa tgctttggcg gcattaagta tttttgctaa acaaagatca tataagcttg
     9601 tttttgcttg tgaaaaaatt tctacttttc ttaagaataa tccttgtgga aactatgctt
     9661 tagctttaga aaatggtgtt gattttgtag aaaatatcca ttctttatcc ttaaagcaat
     9721 ttgctttgtc tttgtgtaaa aaagatgatg tttttataga acaaggtata gctaatttag
     9781 aagctcaata tggctatatg gaacttgctc aagaaattca aatgcaaagt caaagtttaa
     9841 agcttgattt tgatattttt ttaccttcgg gtacaggcac ttcggcagct tttttggcaa
     9901 agtattctaa atttaaagta tttacttgcg cttgtgtagg tgatattaaa tatcttaaaa
     9961 aacaaatttt aacattagat ccaagctatg atttttcaaa tttagaattt ttaacaagtg
    10021 ataaaaaata tcactttgct aagccgtata aagaatttta tgagctttat atggatttaa
    10081 agttaaagtg caatatagaa tttgacttgt tgtatgatat tttaggatta agtatagcat
    10141 taaaacaaga gtggaaaaaa ccattgcttt atatacatca aggtggaatt ttaggaaatt
    10201 ccactatgtt agagagatat aaatttaaaa aatcagttta aaattccata gataaaaatg
    10261 attaaaataa tcaaaggtac tatatatttt acataataaa accaaattcc aaaccatgaa
    10321 cttttaagtg tattgttatt gctaagttct tttagacttt cttgtttgcc taaaatccaa
    10381 cctacataaa tacagcaaaa aaatgcagtt aaaacaaaca aaatatttcc actaatgaaa
    10441 tcaaaactat caaaaatgtt ttttcctttg atgataacaa tatcacgcca aggcccataa
    10501 gttagaatac aaggaagatt gccaagtatg aagataaacc ctagagttag gttaatagaa
    10561 agatttttag aatatttaaa tttttcttct aatacgctaa taataacttg ataaattggc
    10621 aagcttgtgg ttaaagctgc aatcaagagt aagacaaaaa ataaaataca cacaatagtg
    10681 ccaaaatgga tatgagaaaa tgctataggt aaagtttcaa aaaccaaaga aggcccgcta
    10741 tctggagcaa gtcccgctga gaaaagtgct ggaaaaatca taaaaccagc caaaacagct
    10801 atgatagtat ttaaaacccc tgtataaata gcggtttttg ccatattttc atttttatta
    10861 agatgagatg aaagtgttat cattactcca aaacctaggg ataaagcaaa aaagacttgt
    10921 cctaaaacat cgattaaaag ttttggtgat aaaattttac taaaatcagg ttcaagataa
    10981 aatttaactc cagccatagc tccatcaagg gttaaattgc gtcctacaac aataataaga
    11041 cagataaata acaaaggcat taaaaatttt acggattttt ctataccatc tataatgcct
    11101 ctttttaaaa taatataatt aataattaca aaaacagtgg taaaaatacc aactcctaaa
    11161 ggattgaagg ctattttgtc gttaaaaaac tgatgagtaa attctttgct tactacattg
    11221 gcaagactaa aattccctag ggttaattcc caaatataaa ctaaaaccca tcctccaagt
    11281 accatgtagt aagccattat gccaaagctt cctaaaagtc ccatatatcc aatactttgc
    11341 catttttgtt tgaaagcatc tacgctattt gtcatcgctt ttctgcctat gacattttca
    11401 actaaaataa caggaatgcc tatgataatc atagctatac aaaaaactaa tacataagca
    11461 ccgccaccat tttctcctac aagataggga aaacgccaag ttgctccaaa tcctatggtt
    11521 gctccagcaa ctgttagaat ataagttagt gtactactcc atgtttgtct ttgcatgatt
    11581 atcctttcga aaaagaatta ttttacctaa aaataacttt aaaaacttat aagctatcca
    11641 tatagcttat atcgtaagta ttttttaagc gtttgtgtat cgtttcgtgc caattttgag
    11701 atatgagaga gtttaatttt tctaatttat ctaataaaat cggattttgt ctaagagctt
    11761 gatgtgggga gtaaaaaagt tgattgagtt caaatacact aagtgaagta gaattttttt
    11821 ctaaaatttt aatattttca tactttcgta tttgtccaac ttgtaaaact ttataatacc
    11881 atccactcaa gcccgtttta aaaatttcat gtgtaaaatt tgaattattg tgaattttag
    11941 aaatttttac acaaggtttt ctaggttcgc ttacttgcag tattgcattt gaaaattgat
    12001 gtatatcacc tatgcaaaca ttttgttcac aaagcccatc gatgctcaaa ttttcaccca
    12061 ttgagccaaa atttagcttt ttattaagaa atctttccca tataggatag ttttgacaag
    12121 agttggcaaa aatagcctta tggtagcctc catgatgaat tttatcagct atttgatcat
    12181 ctaaaatacc tagaaaatca atttgtgttt cttctaggta agtatcttta ataaatgcgc
    12241 tttggaaatt tttatagttt ttaattttcc ctatttgcaa actttgaatt ttcatggttc
    12301 tatttttttt aataaatcat cagcactgat aaaacccgtg atttttaatt tttcttttcc
    12361 attttcaaag aaaattaaaa caggtgggcc aaaaacatta aattctttca tggttttaat
    12421 ttgttcatta ttattttcgc ttacatcaac tttgataagt ttgtaatttt gcattttttg
    12481 tatgattctt tcatcgctaa aggttaattc atctaaaagt ttgcaatttt cacaccaaga
    12541 tgcagtaaaa tcaagcatta taggctttgt atttgtttgt atttcttgct ttaattgttc
    12601 aaaattgttg atataatcat agcttaaagc atgttttgag gcagatatag tattgaaatt
    12661 taaaggattt aagaaatttt tagccccaaa aagtcctcct aggaaaatac ttagagaata
    12721 agctaaaata agaattaaaa tacttttttt aattttagaa attattgtaa aacttttttc
    12781 aaaaattccc ataaaaacac taaaaaatac acctaaaatt ccataggcaa ttaaaatgta
    12841 attttcttca ataattctag aaagtatcca aatagccata gccaacataa caaaaccaaa
    12901 gaaaattttt actttttcca tccaaaaacc aggtttaata aaacctaatc ctaagcctat
    12961 gaaaagcaaa ggtataccca tgccaaaact catgataaaa agtgcactac cacctaataa
    13021 agcattgcct gtattggcta tataaattaa agcacctgct aaaggagctg ctacgcaagg
    13081 acctactatt aaagcagata aaaatcccat gatggctata cctacaactc ccttcccttt
    13141 ttcgcttttt ttatgtataa aggtttgaaa tcttaatggc aattcaaaac gaaaagctcc
    13201 aaacatagca aaagcaaaag ctatgaaaat tagagcaaaa agaattaaaa taataggttt
    13261 ttgtaaaatt ccttgaatac ttgctcctag aaaacttgct ataactccag caatagcata
    13321 ggctaaagac atgaaaaaaa catagataaa agagagaaaa aaactatatt tttttgaaaa
    13381 tttagcatta ctttttgcta cgataagaga agataaaatc ggaatcatag gtaaaataca
    13441 aggtgttaag gagagtaaaa gtccatagcc aaaaaaactt agcaaaatcc aaaaaaagtt
    13501 atctgttgct aaaaaatttg ctatagagct ttcttcagat tcaattttag tttttttatc
    13561 tgttttttga gctttgtaag gttttgaaat ttcaaaagca tcttttttag aaatgagatc
    13621 aaagtaccaa gtttgaggat tataacacaa gccttgttca gaacagcctt gaaattcgag
    13681 tttgattaaa tttgtggtat tttttgcaaa gcgctctagt aataaatttg gcaaagctaa
    13741 atttaatttt tgataataaa cattttcatt accttttgta gaactttgag gtagattaat
    13801 caaagaactt atatcttttt cgtttatata taatttaagt ttattagaat aaagataaat
    13861 atcttttcca agttcaatat caattgagat agagttatta taagagtttg attttacatt
    13921 aaaagcttca tttaaagata atatagaagc aaaacataaa caaaaactta ataaaataat
    13981 accaaaaata cgcataaatt tcctaaaaac ttattttttc ctttattttt aacttcaatt
    14041 ataatttatt atggtaaatt tactttaaat actttataaa ggtttgaaaa tgcaagaaaa
    14101 taattctcca aaagcgcaag cggttgttaa aaagaatgaa atttatgttt ctgttaaaag
    14161 aaagaaaagt acaatagaat atgaaaaaga tttaaagaat ttgcaaattg agcttttgaa
    14221 atttcaaaat catgttaaag ccaagggttt aaaggttctt atacttatag aagggcgtga
    14281 tgcggctgga aaaggtgggg cgattaaacg tttgattgag catttaaatc cgcgtggttg
    14341 ccgcgttgtg gctcttgaaa aacctagtga tgtggaaaaa acacagtggt attttcagcg
    14401 ttatatagca catttgccct cagccggtga gattgtgatt tttgacagat cttggtataa
    14461 tcgtgcagga gtagaaccgg ttatgggttt ttgtacaccg caacaacata aagatttttt
    14521 aagagaagtg cctttgtttg aaaatatgat ttcaaatagt gatattattt tttttaaatt
    14581 ttatttttca gtatcaaaag acgagcaaaa aaaacgtttt gaaaaacgcc gaagcgatcc
    14641 acttaaacaa tataaattat ctcctgtgga tcaaaaatcg caagaattat gggataaata
    14701 tactttagct aaatactcta tgcttttagc atctaatact ccaacttgtc cttggactat
    14761 tatttcttct gatgataaga aaaaagcaag attaaattta ttgcgtttta tactttctaa
    14821 ggtagaatat ccaaataaaa aaactggaga tttttccaaa attgatgcaa aattagtgcg
    14881 tagtggagaa gaagaaatac gaaaaatgga ggcgaatttg gaaaaacttg acagtaaaaa
    14941 agcagatgag aaaataaaag atttagatta aggaaaagaa tgcaaaagct ggttgaaaat
    15001 ttagcactaa agtactatga taaagtagtt gatttaagac atcaaattca tatgcatcct
    15061 gagcttgaat ttgaagaaga aaatacagcc catttagtgt gtaaaatttt agatgagttt
    15121 ggcattaaat atcaaaaaaa tattgcaaaa acaggaattt tagctattat agaaggaaaa
    15181 aagaagagtc agaaaaaacc aaaatgtgtt cttttaagag cggatatgga tgctttgcct
    15241 gtgcaagaaa aaactaatct aagctatgct tcaaaaattg atggtaagat gcatgcatgt
    15301 ggacatgatg gacatacagc agggcttttg ggagctgctt tgatattaaa tgagcttaaa
    15361 gatgaatttt gtggcacgat taaatttatg tttcagcccg cagaagaggg aagcggtgga
    15421 gctaaaccta tgatagaatc aggtgtattg gaaaatcctt atgttgatgc agtttttggt
    15481 tgtcatttat gggggccttt gcttgaaaat actgctcaaa ttgtaagtgg tgaaatgatg
    15541 gctggaacgg atatttttga tttggaattt attggcagag gagggcatgg agctcatccg
    15601 cacacttgta tagatcctat aattatgaca acgcaatttg taaataatat acaaagtgtt
    15661 atttctagac gtttagcccc ttatgaagca ggggtgatta ccgtaggtca aatttgtgca
    15721 ggaactactt ataatgttat tcctacaaat gcttatttaa aaggaactgt gcgcttttta
    15781 aatgataaaa cgcaagatat tttaaaaagt tctttagaag aagtggctgc tgctacagca
    15841 aaatccaatg gcggagatta taagcttaaa tatactaaag aatttcctcc attgattaat
    15901 gatgaaaaag ctgttttaat agcaagaaaa gcttttgcaa aggtcttagg agaagaaaat
    15961 atcattgttt cttctaaacc tgacatgggg gctgaagatt ttgctttttt aacacgagaa
    16021 agaatggggg cttatgtatt tgttggaatt tcaaaggatt taaatcatcc agctttgcat
    16081 catagttcta ctttttgttg ggatgatgaa aatttaaaag ttttaatgca gggtgatgtg
    16141 atgatggctt tagaattttt aaatttataa aatagaatta aaaattcaca aaaaattcac
    16201 aaaaaatgag taaaat
//
LOCUS       DAPOLW010000024        16157 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.024, whole genome shotgun sequence.
ACCESSION   DAPOLW010000024 DAPOLW010000000
VERSION     DAPOLW010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16157)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16157)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16157
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.024"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            52..2142
                     /locus_tag="ROE18_000549"
     CDS             52..2142
                     /locus_tag="ROE18_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family iron permease"
                     /protein_id="HDX3650754.1"
                     /translation="MKIFKIIFLIISIFLSSSAFARVDDYINEANLIKDMLKQSIETY
                     KKGDNLGAKKLSEDAYFQHFENMEGSIGRNIGRKAITMERKFVNLRRMYKDEAPLTQI
                     NALIDSLYYDLDEVAPILQNGYRLKAEASDINYDKAKAEKSSLEANAKREADAEALIA
                     QMMGVDKKDLAQSSLTTQAPIPINNDTSKLTDDNASTDLQAAAAMDVRLQFILDNIST
                     KFSQAANAFKEKNYQTSKDFLNDALFSDYRNTKVEILVNKFTKAGNDQKIQQAIRTLI
                     RQINDAKIDEKGLRDGLDNIEEQIFDVFLQIPNSELSSLQISGFNDETKGKDYAKVSN
                     DIKLALDEILKNYDGFSASIVDDLQGIYLDIFEASGMENKIGAVDSGLKLKIESLFSK
                     SVALIKASTDKKELEATFNDLEQLIASSVDKIQDSTPYSLFIWALGIILREGLEALII
                     VVAIVSYLVQSGNKNRLNIAYSALFTGVILSFVTAFGVSWLFKENAGQSRELIEGITM
                     LIAVLLLFYVGFWLLSNAQNKKWTSFIKQSAIDAISNNSAKTLWITVFLAVYREGAET
                     VLFYQALLFDAKTSTDFGAVFGGLGLGILILIVLYFLLKAGAIRIPVKQFFYITSYII
                     FYMVFVFTGKGIAELIEGKVIIPSLIPMNFEPILWLGIYPYYETLIPQFIVLIMLIIG
                     ILITKQISKKGVKS"
     gene            2139..2678
                     /locus_tag="ROE18_000550"
     CDS             2139..2678
                     /locus_tag="ROE18_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HDX3650755.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGDPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
     gene            2761..4164
                     /locus_tag="ROE18_000551"
     CDS             2761..4164
                     /locus_tag="ROE18_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HDX3650756.1"
                     /translation="MSIYFVHFLISVLPLSILMAFITPNKKYIFKSFFVVFLGFLFGY
                     FAFFIAAQFLKTENLIFNFDFVFIGLLLVSFIFYFWKKIEILNFILLGILSFCTALHY
                     YFLSQDFPIFTSSLIDSEGISSLGFIALALLVCILIFFFLKWQKNFNQKTSFMLFLLL
                     ILIESDKALANILLTLMRNSIIETHAFLVSFVGKSNYFGVFGIYVYLIFITFLAFLSL
                     KIRKKNISKKQILDINYRKNEAKTSLINRYFSSVFISCVVSFCIVLYFFMVSSKPLTI
                     DEPKEILPDKNGKFIFDIALLRDNKLHRFAYISAEGKVIRFFLINKREDKDSPVAVFD
                     ACMICGDMGYIKKDGQLICISCNVRIFLPSVGKSGGCNPIPLKYEYDGKKITIDVKDV
                     IAGSNYFSQIKEIEVQDPVSKTKVINTQAPFSYSYKGVTYYFSNQNNYEEFKKDPTKY
                     VEENEAQFLIQRRNDVG"
     gene            4151..5443
                     /locus_tag="ROE18_000552"
     CDS             4151..5443
                     /locus_tag="ROE18_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDX3650757.1"
                     /translation="MMLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNIT
                     ALAPFLEGKITIENSQQKALIYGAYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKD
                     DSNEIMLGEDFAKNNKLKLGDTIKLIGENNQSKEAKIVGILLHANPKMSNKIIAPLNL
                     AQDLLNKQGLYSSTEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQ
                     ISDGLPGADAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRK
                     KEIGLLKVLGANTFQIYLIFASENLIVALFAALLGFIFGTALSQIISLSIFGYFIDIA
                     FVALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            5433..6551
                     /locus_tag="ROE18_000553"
     CDS             5433..6551
                     /locus_tag="ROE18_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDX3650758.1"
                     /translation="MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDIKLSKELKAYGANVMISPKQDENFISNTEYEKIKENLKARALTPFLYDFLNLGSTS
                     GVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKAGNELQIYNP
                     NNGKSIKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKAKT
                     QAISNEFIDAKPISSVSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            6548..7201
                     /locus_tag="ROE18_000554"
     CDS             6548..7201
                     /locus_tag="ROE18_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDX3650759.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            7198..7686
                     /locus_tag="ROE18_000555"
     CDS             7198..7686
                     /locus_tag="ROE18_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HDX3650760.1"
                     /translation="MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLIS
                     LL"
     gene            7647..8150
                     /gene="traF"
                     /locus_tag="ROE18_000556"
     CDS             7647..8150
                     /gene="traF"
                     /locus_tag="ROE18_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HDX3650761.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKAQNFALVFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKA
                     WADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEK
                     EIKKVKS"
     gene            complement(8160..8597)
                     /locus_tag="ROE18_000557"
     CDS             complement(8160..8597)
                     /locus_tag="ROE18_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HDX3650762.1"
                     /translation="MKKTILTILFLLTLTQAKEIQIYESPTCGCCDLWADYMKAKGYE
                     VSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIAWLLENKPKDVIGI
                     SAPGMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
     gene            complement(8896..9312)
                     /locus_tag="ROE18_000558"
     CDS             complement(8896..9312)
                     /locus_tag="ROE18_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650763.1"
                     /translation="MKKLGLVLAVLVALNVSAFADLIVINKKDLVPVSASEMQNKYFQ
                     ESIKSTLTEPLFKKATFYEADIVAKVDPRTYNSTQAIIQKEYSDKSNYVYYKQVLILT
                     SDGKRARLSTLSCEIASFDKKGYLCGGTADHNYSIK"
     gene            complement(9487..9571)
                     /locus_tag="ROE18_000559"
     tRNA            complement(9487..9571)
                     /locus_tag="ROE18_000559"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9535..9537),aa:Leu,seq:tag)
     gene            complement(9576..9652)
                     /locus_tag="ROE18_000560"
     tRNA            complement(9576..9652)
                     /locus_tag="ROE18_000560"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9616..9618),aa:Arg,seq:tct)
     gene            complement(9667..9743)
                     /locus_tag="ROE18_000561"
     tRNA            complement(9667..9743)
                     /locus_tag="ROE18_000561"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9707..9709),aa:Arg,seq:tcg)
     gene            complement(9747..9823)
                     /locus_tag="ROE18_000562"
     tRNA            complement(9747..9823)
                     /locus_tag="ROE18_000562"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9787..9789),aa:His,seq:gtg)
     gene            complement(9848..9925)
                     /locus_tag="ROE18_000563"
     tRNA            complement(9848..9925)
                     /locus_tag="ROE18_000563"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9888..9890),aa:Pro,seq:tgg)
     gene            complement(9968..10816)
                     /locus_tag="ROE18_000564"
     CDS             complement(9968..10816)
                     /locus_tag="ROE18_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HDX3650764.1"
                     /translation="MRFVFLICCACLVFANEILLLSKFDKQDFNSKDFNAYLMSEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFAIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFQISTCTLKNRLAVLEEYLQKYPSAYIKIISQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPYEKGRSKNATKLKPYDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDEDRKNPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRDENP"
     gene            complement(10816..11478)
                     /gene="cgpA"
                     /locus_tag="ROE18_000565"
     CDS             complement(10816..11478)
                     /gene="cgpA"
                     /locus_tag="ROE18_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HDX3650765.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDQNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYTISRFKNPDPSKVLDVSVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSKMISPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYSIQKDATGYMIN
                     LL"
     gene            complement(11468..11671)
                     /locus_tag="ROE18_000566"
     CDS             complement(11468..11671)
                     /locus_tag="ROE18_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650766.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDTLLSLENTKEELNKKMIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            complement(11737..12981)
                     /gene="eno"
                     /locus_tag="ROE18_000567"
     CDS             complement(11737..12981)
                     /gene="eno"
                     /locus_tag="ROE18_000567"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HDX3650767.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEDLIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIELESDEYLGEKL"
     gene            complement(12981..14012)
                     /gene="recA"
                     /locus_tag="ROE18_000568"
     CDS             complement(12981..14012)
                     /gene="recA"
                     /locus_tag="ROE18_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HDX3650768.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            14118..14978
                     /locus_tag="ROE18_000569"
     CDS             14118..14978
                     /locus_tag="ROE18_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HDX3650769.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENVVLSGEVDAGVLIHESILEFDQSLCVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDAIKIERDLTNAVKIADANRKILAPMLME
                     RKLIRVDEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDYLI
                     PSEYEEARNS"
     gene            14990..15259
                     /gene="fliQ"
                     /locus_tag="ROE18_000570"
     CDS             14990..15259
                     /gene="fliQ"
                     /locus_tag="ROE18_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HDX3650770.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            15256..16032
                     /locus_tag="ROE18_000571"
     CDS             15256..16032
                     /locus_tag="ROE18_000571"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HDX3650771.1"
                     /translation="MIIDFKKYSSVRIGNEFEVLVLDQIYDFDGFLIGGANNLLISPK
                     PKNIGILGDGFDFMQILDQNKDFIHLRIGCKTKSSKIYRFAKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATSQGEILRENINFDYRFCPLNMPFFWAEFKLNFG
                     FDTLKDEALKNARSNQPSGASFGSIFKNPKNDFAGRLIEAVGLKGFSKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIELARKKVFEEFGTNLENEVIII"
BASE COUNT         5439 a         2622 c         2542 g         5554 t
ORIGIN      
        1 atttattttg ataataaata ttatttttat caaaaatcaa ggataatgat aatgaaaatt
       61 tttaaaatta tatttttaat tataagtatt tttttatcaa gctcagcttt tgctagggta
      121 gatgattata ttaatgaagc aaatcttatc aaagatatgc taaaacaaag catagaaact
      181 tataaaaagg gcgataatct aggcgccaaa aagcttagcg aagatgcgta ttttcaacat
      241 tttgaaaata tggaaggctc aataggaaga aacataggaa gaaaagctat cactatggag
      301 cgtaaatttg taaatttgcg tcgcatgtat aaagatgaag ctcctttgac acaaattaat
      361 gctttaattg atagtcttta ttatgatctt gatgaagtag ctccgatttt acaaaatgga
      421 tatcgtttaa aagcagaagc aagcgatata aactatgata aggctaaagc tgaaaaatca
      481 agcctagaag ccaatgccaa acgcgaagct gatgcagaag ctttaatcgc acaaatgatg
      541 ggtgtagata aaaaagattt agcacaaagc tctttaacca cccaagctcc tatacctata
      601 aataatgata caagcaaact tacagatgat aatgcaagca ctgatttaca agctgccgct
      661 gcaatggacg taagattgca atttatacta gataatatct ctaccaaatt ttcacaggca
      721 gctaatgctt ttaaagaaaa aaactaccaa actagtaaag attttttaaa tgatgcctta
      781 tttagtgatt atcgcaatac caaagtagaa attttagtaa ataaatttac caaagcagga
      841 aacgatcaaa aaattcaaca agccatacgc acccttatac gccaaatcaa cgatgcaaaa
      901 atagatgaaa aaggcttaag agatggctta gataacatag aagaacaaat ttttgatgtt
      961 ttcttacaaa ttccaaattc agaactttca agtttgcaaa tttcaggctt taatgatgaa
     1021 acaaaaggca aagattatgc caaagtttct aatgatatca aacttgcttt agatgaaatt
     1081 ttaaaaaatt atgatggctt tagtgcttct atagtagatg atttacaagg aatttatcta
     1141 gatatttttg aagcaagcgg tatggaaaat aaaatcggtg ctgtagatag cggcttaaaa
     1201 cttaaaatag aaagtttatt ttccaaaagc gtagctctta tcaaagcaag tacagataaa
     1261 aaagagcttg aagctacttt taatgactta gaacaactca tagccagcag cgtggataaa
     1321 attcaagatt ctactcctta ttcgctgttt atatgggctt taggtattat tttgcgtgaa
     1381 ggcttggaag ctttgattat cgttgtagcc attgtttctt atcttgtgca aagtggcaac
     1441 aaaaatcgtt taaatatcgc ctatagtgct ctttttacag gagtaatttt aagttttgtt
     1501 accgcttttg gagtttcttg gctatttaaa gaaaatgcag gacaaagtag agagcttata
     1561 gagggtatta ccatgcttat agccgtatta ctactctttt atgtgggctt ttggctactt
     1621 tcaaacgcac aaaataaaaa atggacaagc tttatcaaac aaagtgctat agatgctata
     1681 tcaaacaata gtgcaaaaac cctttggatt accgtatttt tagctgttta tagagaaggt
     1741 gcagaaactg tgctttttta tcaagccttg ctttttgatg ctaaaacaag cactgatttt
     1801 ggtgctgttt ttggcggact tggacttgga attttaatac ttattgtttt atattttctt
     1861 ttaaaagcag gagccattcg catacctgta aaacaatttt tctatatcac ttcttacatt
     1921 attttttaca tggtttttgt ttttacaggc aaaggcatag ccgaactcat agaaggaaaa
     1981 gtcatcattc ctagtcttat acctatgaat tttgaaccga ttttatggct tggaatttat
     2041 ccttactatg aaactttaat ccctcaattt atagttttaa ttatgctaat tattggcatt
     2101 ttaataacaa aacaaatttc aaaaaaagga gtaaaatcat gataaaaaaa gttttatcag
     2161 tagttgctgc agctgcggtt attagtacaa atttatttgc aggcgaagtg ccgatcggcg
     2221 atccaaaaga acttaatggc atggaaatag ccgctgttta tttacaacct attgaaatgg
     2281 agccaagagg tattgattta gctgcatctt tagcagatat tcacctagaa gctgacattc
     2341 acgcacttaa aaacaatcca aatggttttc cagaaggttt ttggatgcct tatttaacta
     2401 tagcttatga acttaaaaat accgacacag gtgcaattaa acgtggaact ttgatgccta
     2461 tggtggctga tgatggtcct cactatggtg caaatattgc tatggaaaaa gataaaaaag
     2521 gtggctttgg cgtaggaaat tatgaactta ctttttatat ctcaaatcca gaaaaacaag
     2581 gttttggacg ccatgttgat gaagaaacag gtgtgggtaa gtggtttgaa ccttttaaag
     2641 tagattataa attcaaatac acaggcacgc caaaataatt ttacgctcgg attttccgag
     2701 tgtttgaata tttttatttt tatttgaaaa attaaaataa caatgtttaa agagtaaatt
     2761 atgagtatat attttgtgca ttttcttatc agtgttttac cgctaagtat tttaatggcc
     2821 tttatcactc ctaataaaaa atatattttt aaaagttttt tcgtagtttt tttgggcttt
     2881 ttatttggat attttgcttt ttttatcgca gcacaatttt taaaaaccga aaatttaatc
     2941 tttaattttg attttgtttt tataggttta ttgctagtaa gctttatatt ttatttttgg
     3001 aaaaaaattg aaattttaaa ttttatttta ttgggaattt taagtttttg caccgctttg
     3061 cattattatt ttttaagtca agatttccct atttttacta gctctttaat cgatagcgaa
     3121 ggtataagtt ctttaggttt tattgcttta gccttgcttg tttgtatttt gattttcttc
     3181 tttttaaaat ggcaaaaaaa ttttaatcaa aaaacaagct ttatgctgtt tttactgctt
     3241 atccttatag aaagcgataa agctctagcc aatatcttgc ttactttaat gcgaaattcc
     3301 atcatagaaa ctcatgcttt tttggtgagt tttgtaggaa aaagtaatta ttttggtgtt
     3361 tttggaattt atgtttattt aattttcatc acttttttag cattcttaag cttaaaaatt
     3421 cgcaaaaaaa atataagcaa aaaacaaatt ttagatataa attatcgcaa aaacgaagct
     3481 aaaacaagtc ttattaatcg ctatttttcc agtgttttta tctcctgtgt tgtaagtttt
     3541 tgcattgttt tatacttttt tatggtaagc tctaagcctt taaccataga tgagcctaaa
     3601 gaaattttac ccgataagaa tggcaaattt atctttgata tagctctttt aagggacaac
     3661 aaactccacc gctttgctta tatcagtgct gaaggcaaag tgataaggtt ttttcttatc
     3721 aacaaaagag aagataagga ttctcctgta gctgtttttg atgcttgtat gatttgtgga
     3781 gatatgggct atatcaaaaa agatggacaa ctcatttgca tttcttgcaa tgtgcgtatt
     3841 ttcttgccaa gtgtaggtaa aagcgggggt tgcaatccta tcccactcaa atacgaatac
     3901 gatggtaaaa aaatcaccat agatgttaaa gatgtaatag caggatctaa ttattttagt
     3961 caaatcaaag aaattgaagt gcaagatcct gtatcaaaaa caaaggttat aaacacccaa
     4021 gctccttttt cttatagcta taaaggggtt acttattatt tttcaaatca aaacaactat
     4081 gaagaattta aaaaagatcc tacaaaatat gtagaagaaa acgaagccca atttttaatc
     4141 caaaggagaa atgatgttgg ctaaaatgat ttttaactct atatttaaaa acaaaattca
     4201 aaaattttta gcctttctta cttgtttttt agccacgctt ttgctctcta ctatgctaaa
     4261 tattacccta agtataggtg atgaagtaac taaacaactc aaaagctatg gctctaatat
     4321 ccttgtttta cccaaaggct caagccttag tatagaaata ggtaatgaac tttatgaacc
     4381 cttaaaaaac aaaaactacc tagaagaaaa aaatttatat atgattaaag acatttattg
     4441 gcgtaacaac atcaccgcac ttgctccttt tttggaaggt aaaatcacaa ttgaaaactc
     4501 ccagcaaaaa gcacttattt atggtgctta ttttcaaaaa gccataaaaa ttaaagatga
     4561 tgatgatttt atcacaggta taaaaagtct ttatccttat ttagcagtgc aaggagaatg
     4621 ggcaaaagat gatagcaatg aaatcatgct aggcgaagac tttgctaaaa acaataaact
     4681 aaaattagga gatactatca aactcatagg agaaaacaat caaagcaaag aagcaaaaat
     4741 cgtaggcatt ttacttcatg ccaatcctaa aatgtcaaat aaaatcatcg ctcctttaaa
     4801 tttagctcaa gatttactca acaaacaagg gctttactca agtacagaag taagagcttt
     4861 taccatacct gaatcagccc tttctgaaaa agtacgtcgc atgggcgaag aaaaattaga
     4921 tcagttagaa tatgacaaat ggtattgctc agcttatgta ggctcaatcg ctagtcaaat
     4981 tagcgatggc ttgccaggtg ctgatgcaaa agctctaaat gctataagcg atgctcaaag
     5041 cttggtggtt aaaaagatcc aatccttaat gggcattact tgcattattt gtcttattgt
     5101 tgcaagtatt gcgatttcaa gtctaatgag ttctgaaatt catcgtagaa aaaaagaaat
     5161 aggactttta aaagtacttg gtgctaatac ttttcaaatt tatctcatct ttgctagtga
     5221 aaatttaatc gtagctttat ttgctgcttt acttggattt atttttggca cagcactttc
     5281 tcaaatcatc agtcttagta tttttggata ttttattgat atagcctttg tagctttacc
     5341 tttaagcttt atttttgcag gacttattgc cttacttggt tgcttgcttc ctatcaaaaa
     5401 tatcacacaa ctttcagctg caggagtgct ttatggtaga taagtttttc ctcaatgagc
     5461 tttttaaaag cattagcttt tcttatcaaa gactttttat tatagtttta agtgttttta
     5521 taggagcact tacttgctca gcttttttaa atatttattt tgatatcgac atcaaacttt
     5581 ctaaagaatt aaaagcttat ggagcaaatg taatgataag tcccaagcag gatgaaaatt
     5641 ttatctccaa tactgagtat gaaaaaataa aagaaaattt aaaggctaga gctttaactc
     5701 cttttttgta tgatttttta aatttaggca gtacaagcgg ggtggtttta ggcactgatt
     5761 ttagggcttt aaaaatcact aaaccttttt tagaagttaa agaaggaagc ttttctctaa
     5821 atgattttga tgaaaattca gcctttttag gagttaattt agccaagcaa ctaggcctaa
     5881 aagcaggcaa tgaacttcaa atttataatc caaacaacgg aaaaagcata aaacttacca
     5941 taaaaggcat actttcaagc aatgatgaat ttgatagcat tgttttagcc cctttaagcg
     6001 tggtgcaaaa tttaagcgat agagccggta ttaactatgc taatgctgta gtttatggaa
     6061 attttgatga agttaaagcc aaaacacaag caatcagcaa tgaattcatc gatgcaaaac
     6121 ctatatcttc agtatcctta agtgaaggtt tagtgcttgg aaaaatcaaa gctttaatgt
     6181 ttttaatcat acttgtggta ttgatcatag ttactactag cgttaataca actttaagtt
     6241 ctattatatt ttctcgcaaa aaagaaatcg cactgcgttt agccttgggt gcgaaaaaaa
     6301 gtgaaatttt taaacttttt gctagtgaat gctttatagt aagttttttt gctagtttaa
     6361 tcggagcttt ttgtgggata tttttagcca atgtctttgg ttatttaatt tttaattcta
     6421 gtattgattt tagatttata gctgttttta tagccttaat catttctttg atttttgcct
     6481 ttttggctgc attttttcct ataaaaagag cattaaaaat caatgtgtgt gaaaatttga
     6541 aaggtgaatg atgaaaaaag aacttattaa aataaataat ttaaataaag aatttggcaa
     6601 agttaaagcc ttaaacaata tcaacttaag cgtctatgaa ggagaatggc ttgccatcat
     6661 gggtccatca ggaagtggaa aatcaacact tttaaacata ctatcgctca tggatactcc
     6721 aagctctgga gagtatatct tggataatga aaacctagag caaatggatg aagagcaaaa
     6781 aatcaccttg cgtcgtgaaa aaatagggct tgtctttcaa caatttcatc ttatccccta
     6841 tcttaacgcc ttagaaaatg ttatgctctc tcagtattat cactcaagtg tagatgaaga
     6901 agatgccaaa atggttcttg aaaaagtagg actttcgcat agactcactc atttacctag
     6961 ccaattaagt ggcggagaac aacaaagagt ttgtatagca agagctttaa tcaacaaccc
     7021 agagctttta ctcgcagatg aacccacagg aaatttagat gaagccaatg aacaaatcgt
     7081 tcttcaaacc ttgcaaaaat taaaaaatga aggtaaaacc atagttttaa tcacacacaa
     7141 tcctgattta gccaaattcg cagatcgaac ccttatctta caacatgggg tgttaaaatg
     7201 aaaaaaagcc ttttaatctt aagcattttg tttttactca atgcttgttc ttttgaaaat
     7261 tcaaaagata ctggaaaagt tggagaaaaa agcgctgaaa tttcagctaa agatacttta
     7321 ggaaaagctg taaaacttgc tgatgataat acaagtttaa aagtcttagt cttttttcaa
     7381 aatggctgcc cttcttgctt aaaagaactc ccttctttag atgaattcat acaaaatcac
     7441 cccaataaaa tcagtgttta tgctataaat tccatcgata atgccaatgt ggttaaggtt
     7501 ttagccgaac aatttgactt taaaaatgta aaagttttaa aagacgatct taaaatcacc
     7561 aatgatcgtt acgctgtgtt tgcaacccct actaccatca tcattaaaga tgggatgata
     7621 aaagatagaa ttttaggaga aaaaccatgg gaatttttcg aatccaagct tatttctttg
     7681 ctttaatcat agctttattt tttgtagctt gtgatagtgg agaaaatttt aaagctttaa
     7741 atagcgataa aacctataat tttgcctaca atggttttga aaaaagccta aaactaaatg
     7801 ataaagcaca aaattttgcc ttagtatttt tcacaaaaga ttgcggagtt tgcaaagaac
     7861 aaattcctat tttacagaat ttggctaaaa attatgattt taatatcttt gtggttttag
     7921 gcgatgcaaa cgatgcaaac gatgcaaaag cttgggctga tgaaaaaggt ttatctaatt
     7981 tagcaatgtt ttatgaaaaa agagcagcta aatacctttc aagtgccatt ggggaaatat
     8041 atggagtacc tgtgcttagt tttttcaaag aaggaaaaat ggatgaaaaa ttcataggct
     8101 taactcctta tagcatactt gaaaaagaaa tcaaaaaagt aaaaagctaa aaatttactt
     8161 taaagctttt tatcccctat aaaatatcca taaagctcat agcttccatc ttttttcatc
     8221 aaaattacag gatatttttc actataacct tgttccattc ctggacttcc ttgcggcatg
     8281 ccaggagctg aaattcctat aacatcttta ggtttgtttt caagcaacca tgctatagca
     8341 ctttcaggaa catgcccttc aatagcatag ccttcaatca cacctgtatg gcaactttga
     8401 tactcatctt ttatacccat tttttctttg attttaagaa aatcattggt tttatgaaca
     8461 ctaacctcat aacccttagc tttcatataa tcagcccaaa gatcacaaca gccacaagta
     8521 ggactttcat aaatttgtat ttccttagcc tgcgtaagag tgagtaaaaa aagaatggtt
     8581 aaaattgttt ttttcataat tgctatccta agtaaaaaat atataataat acttttataa
     8641 agttaatatc atcacatttt taacactaaa aatgaattta caaaaattta atcaagaaaa
     8701 gacttttaat gagtgttgat tttgtctttg cagcaaagat ataaaagata aaacgattta
     8761 aaaaactaga aatttttaac ttaaaaagct taaaatttag atatatttta tacttactat
     8821 gttttttcat agtatgttct aatggtggat ttccgccaag agtgaaaact caaggcggat
     8881 ttttatttgc aatatttact taatagaata attatgatca gctgtgcctc cacataaata
     8941 ccccttctta tcaaaacttg caatttcgca agaaagagta gataatctag ctcttttacc
     9001 atcactagtt aatataagaa cttgtttata ataaacataa ttgcttttat ctgaatattc
     9061 tttttgtatt atagcttgag ttgaattata agttcttgga tcaacttttg caacaatatc
     9121 tgcttcataa aaagttgcct ttttaaaaag tggctcagtt aaagttgatt ttatactctc
     9181 ttggaaatat ttgttttgca tttcgcttgc tgaaactgga actaaatctt ttttattgat
     9241 aactatcaaa tctgcaaatg ctgacacatt taaagcaact aaaactgcta aaactaaacc
     9301 taattttttc attttatctc cttgaattga attttgtata tttgaattat ttttcaaatc
     9361 ttttgcaaga taatttttaa atttatctaa attaaatttg cattttatct aacaatcata
     9421 agaaatttta aaatgaaata aaaatttatg agaaatcaac tcttatttga aaatgataaa
     9481 agtaagtggt gcggatgaaa ggacttgaac cttcacgcat tgctgcacca gatcctaagt
     9541 ctggcgtgtc tgccaatttc accacatccg caaagtggta cgcccaagag gattcgaacc
     9601 tctgacctac ggcttagaag gccgttgctc tatccagctg agctatgaac gcatataaaa
     9661 tcttggtggt gcgcccgata ggaatcgaac ccataaccta cagatccgaa gtctgtcgct
     9721 ctatccagtt gagctacgag cgctagtggg gtgagtgatg ggaattgaac ccacgaccct
     9781 caggaccaca atctgatgct ctaaccgact gagctacact caccattttg tataaattta
     9841 taaaaaatgg tcggggtgaa aggattcgaa ccttcggccc cttggtccca aaccaagtgc
     9901 gctaaccaga ctgcgctaca ccccgaataa ataaaaggaa gtattttatc acaaaataat
     9961 tttaaagtca aggattttca tctcttattc ttaaaaacac cggaaagcga ggtaaggaat
    10021 ttttggtcaa tccattaaat ttataagtca caatactacc aatttttgga ggattttttc
    10081 tatcttcatc ttttaaacca ctgcctattt taatgatttg tccattaggc attttacaaa
    10141 gtaaggcacc tacttgattt tcaaatttac ccttgccctt gcgaaatcct accaactcac
    10201 attctgcatc atcatagggt tttaatttcg tggcattttt acttctgcct ttttcataag
    10261 gacttaaatt tttgcgtata acaatacctt caccttgatt ttttataatg ctttcgtaaa
    10321 attgatttaa attattttga ttttcaactg gaatttgaga aataattttt atataggcac
    10381 taggatattt ttgcaaatac tcttctaaaa cagccaaacg atttttaaga gtgcaagtag
    10441 aaatttgaaa ttcttcgcaa gcatttggta catcaaaaat attataagtt acttccttcc
    10501 ataaggtcaa attgctatcg ccactacgaa ttaaagctga aatttcatca aatttatttc
    10561 ttgctatcca aagctcacca tcaatagcaa aaggagggaa attttttgta aaaaagtcag
    10621 gagtttttat tttgtagttt tggcgagttt ttagatattt cccatcccaa attccacgca
    10681 ctccatcaag tttttcgctc atcaaataag cattaaaatc tttagagtta aaatcttgct
    10741 tatcgaattt gctaagaagt aaaatttcat tagcaaaaac taaacaagca caacatatta
    10801 aaaaaacaaa cctcatcaaa gcagattaat catatatcca gttgcatctt tttgaatact
    10861 ataattataa gttccatcaa gatatattac aagtcgataa tatcctttat gagatccaaa
    10921 gtctatgcgt ttaaaaatag aattgctaag gcgtatgttt tttgtagggc taatcatttt
    10981 agatctaaaa tctataacga ttttacttgg atttcctact gaaaaatctg taatcatttc
    11041 atcactagtg ttaagtttta ttttattttt ataaaccgca taagaaataa aatcataaat
    11101 ctttgcaacc tgtaaaggta tttcaacatt ggctgttgag tttgattctt gtttggagct
    11161 atttttttca ggtatagtaa ctgaaacatc gagtactttt gaaggatcag gatttttaaa
    11221 tcttgatata gtataagtat cgtgccaatc aatactttta ttgacatcta aatcgatctt
    11281 atcttcactt ccgtctaaat tgatataatt aaaagtgatg ctttttaaaa ttcttgcact
    11341 agaattaaat ttaacttcct ctttttgaaa ttcaggtgga gcaaccaagg ttatattttg
    11401 atctgtcttg aaaggatttt catcagcata taaaagagag gtaaaaataa aaaatattgc
    11461 caaaattcta gttttcattt gggtataatc cttttaattc aaaataatct ttttgtgctt
    11521 tagcattttg ttctttgagc aaaatcatct ttttattaag ctcttctttg gtattttcta
    11581 agcttaataa agtatctaaa gaatactgcc caaaaaacat attgccaaaa taaatcgctc
    11641 caattacaac aagaaaagcc caaaaaatca tttttataac atgggtataa aaactttttt
    11701 ttcttgtgct ttcgtcgtat tctttaagta aatcgctcag agcttttctc ctaagtattc
    11761 atcgctttca agttcaattt caagcaagcg attgtatttt gcggttcttt cacctctcgc
    11821 tagggctcct gttttgattt gtcctgtatt taaagccaca gcaaaatccg ctataaaagc
    11881 atcttcactt tcgccgcttc tatgactcat cacacattta tagttatttc tttgcgctaa
    11941 acgcacagtt ctcatagttt gggtaatagt tccgatttga tttggtttaa taagcacagc
    12001 atttgccatt tttttgatga tgccttctct taaaatatct tcattagtta caaacaaatc
    12061 atcgcctaca agctgaattt tattgcctaa tttttcagtc agcttgatcc agccttcaaa
    12121 gtcattttca gctaagccat cttcgatact gcaaattgga tattttgcac aaagttctac
    12181 atagcgttcg atcaaatcct cgcttgaaaa agccttgcct tccatgtgat atttgccatc
    12241 tttgaaaaat tctgtacttg ccacatcaag agcgattttt acacgatttt cataacctgc
    12301 ttttttgata caagtcatta aaagatcgat aggttctgtg ttgttagcta aatttggagc
    12361 aaaaccgcct tcatcaccta aagccgtaga atgtccagaa tttgcgagtt ctttttttaa
    12421 tatcgcataa atttcacaaa ctgaacgcaa agcttcttta aagctagtaa aaccaaaagg
    12481 catgatcata aattcttgaa aatctacatt gttgtttgca tgagcaccgc catttatgat
    12541 attacacatt ggcacgggta aaatgctcgc atttgcacca cctaagtagc gatataaagg
    12601 cattcccaaa gcagctgcag ccgcacgagc tgttgccata gatacgccta aagtcgcatt
    12661 tgcacctaaa tttgagtaat tatttgttcc atcaagctca cgcaaagtat catcaagttg
    12721 agtttgatta aaagcatcta gtcctaaaat ttcatctgca atggtctcat tgacatttgc
    12781 aacagctttt aaaacgcctt ttccgccaaa tctttcatca ttatcacgca attctaaggc
    12841 ttcttttgaa cctgtacttg caccacttgg aactatggcc gcacctacac ttccatcgct
    12901 tagcgtaact tcggctttta cggttggatt tcctctacta tcaagaactt cataggctct
    12961 aacatcttca attactaaca ttattcttct ccttcgtcat cttcgctacc gctgatcata
    13021 ccttctattc ccatagaatt ttgaattgct tttgtgattt catctgcaat ttcagggttt
    13081 tcttttaaga aagcttttga attttctcta ccttgtccaa gttttttatc tttataagaa
    13141 aaccacgcac cacttttatc tacgatatca agttttacac cataatcgat caattcacct
    13201 tcacggctta aaccctctcc aaacatcaca tcaaattcag cttgtctgaa tggaggagca
    13261 actttatttt taactacttt tactttaacg cggtttccta taggttcttc gttttgtttt
    13321 aaggttgcta cttttctaac atctaaacgc acagaagcat aaaattttaa tgcatttcca
    13381 cctgttgtgg tttcaggagt accataaccc atagcaccga ttttcatacg aatttggttg
    13441 ataaaaatta ctgtggtatt cattttatga actatacctg taagttttct tagagcttga
    13501 gacataagtc ttgcttgaag tcctacatgt tgatcgccca tatcgccttc aatttctgct
    13561 tttggggtaa gtgctgcaac gctatctact acgataagat ctactgcgcc acttcttgct
    13621 atagtttcta caatttctaa ggcttgttct ccaaaatcag gctgagaaac atacaaatca
    13681 tctgtattta cacccaaatt tttagcatat tttacatcaa gcgcatgttc tgcatcgata
    13741 aaagcacaaa ctccacctgc tttttggcat tctgcgataa tgtgtagagt tagagtggtt
    13801 ttacctgaac tttcaggccc ataaatttct ataattcttc cttttggaac accgcctata
    13861 cctaaagcaa gatcaagtcc aactgagcct gtgcctatgc tatcgatttg ctcgacttct
    13921 ttatccccta gtcttaaaat agtacctttt ccaaaggttt tatctaaact ttttagggca
    13981 gcgtctagag attttctttt attatcatcc ataactttcc ttaaaaattc taaattttta
    14041 gttagaattc taacaaaata aaattaaata atgatttatt ttgctagaat taaagcaaag
    14101 atttaaagga agcatagatg aaaaaaatta ctattgcaca ttctcctgat gctgatgata
    14161 tttttatgta tatggcaatt aaatttgggt ggatagggaa tgattttgct tatgaaaata
    14221 cagctttaga tatacaaact ttaaatgaat ttgccttgaa aaatgaattt gatgctacgg
    14281 ctatttcttt tgggctttat cctttaatcg cttctgagta tgcgctttta cgcacagcag
    14341 tgagttttgg tgaaggttat gggccaaaac tcatcaagaa aaaagacacg catttaaaaa
    14401 gaaattttaa agtcgctttg agtggagcaa ataccaccaa tgctttgatt tttcgtatga
    14461 aataccctga agcaagaatt atttataaga attttttaga cattgaaaat gtagttttaa
    14521 gtggcgaagt agatgcagga gttttgatcc atgaaagcat tttagaattt gatcaaagtc
    14581 tttgcgtgga agcagaactt tgggatatat ggcttgaatt tgctaaagaa aatttgcctt
    14641 tgcctttagg tggaatggct ttgcgtcgtt ctttgccttt aagcgatgcg attaagatcg
    14701 aaagagattt aaccaatgct gtaaaaattg ccgatgcaaa tcgtaaaatt ttagccccta
    14761 tgcttatgga aagaaaactt atccgtgttg atgaagaaaa acttgatact tatcttaatt
    14821 tatatgccaa taaaaactct attagcatga atcaaactca acttttagct gtagatacgc
    14881 tttttaaact aggatatgat tataaatttt atgataaaat catacatgta aatgattatc
    14941 ttatccctag cgaatacgaa gaagctagaa attcttaaaa aggataaaaa tggacgaaag
    15001 taccttagtt gctcttggag tgcaaacctt taaaatcaca cttttacttt ccttgcctat
    15061 gcttttggca ggacttattg cagggcttgt gatcagtatt tttcaagcaa ctacacagat
    15121 taatgaaatg acactttctt ttgttcctaa aatcatcttg gttgtggtta ttttaatctt
    15181 tttaatgcct tggatgacta caactatgat tgattttact gagaatatac taaatcaaat
    15241 tccaactttt atcaaatgat cattgatttt aaaaaatact cttccgtgcg tataggaaat
    15301 gaatttgaag ttttagtttt ggatcaaatt tatgattttg atggtttttt aataggtggt
    15361 gcaaataacc ttttaattag cccaaaacct aaaaatatag gaattttagg agatggtttt
    15421 gattttatgc aaattttaga tcaaaataaa gattttatac atcttcgcat aggctgcaaa
    15481 acaaaatcaa gcaaaatata tcgctttgct aaagaaaata atcttaaggg ttttgagtat
    15541 ttaagcaaaa ttcctggcac acttggtggg cttttgaaaa tgaatgcagg gcttaaagga
    15601 gagtgtatca gtcaaaattt aatcaaaatt gctacttctc aaggcgaaat tctaagagaa
    15661 aatataaatt ttgattatcg tttttgtcct ttaaatatgc cttttttttg ggctgaattt
    15721 aaactaaatt ttggctttga tacccttaaa gatgaagctt taaaaaatgc aagaagcaac
    15781 caacctagtg gagcaagctt tggctctatc tttaaaaatc caaaaaacga ctttgcagga
    15841 cgtttaatcg aagctgtagg gcttaaaggc tttagtaaag gagatgctat gttaagcgat
    15901 aaacacgcaa attttttaat taataaaaaa aatgcaagtt ttgaagatgc gttttttctt
    15961 atcgaattgg ctagaaaaaa agtctttgaa gaatttggca caaacttaga aaatgaagtg
    16021 attataatct aaacacacaa aacaataaaa gtctaaaaaa tttactctta atctaacttt
    16081 aaataaaata caaattcaaa ccatatagtt ttataataag tatttaataa taatttaagt
    16141 ataattatta tatagtc
//
LOCUS       DAPOLW010000025        15974 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.025, whole genome shotgun sequence.
ACCESSION   DAPOLW010000025 DAPOLW010000000
VERSION     DAPOLW010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15974)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15974)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15974
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.025"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            85..333
                     /locus_tag="ROE18_000572"
     CDS             85..333
                     /locus_tag="ROE18_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650772.1"
                     /translation="MNDKMRIFLLIIPFVFLSACASKDILIKTEIKEVKVPIKCPLKL
                     PLKPLDKKDLESAKKISKYYLEVENIAKLCTGEKDERK"
     gene            445..759
                     /locus_tag="ROE18_000573"
     CDS             445..759
                     /locus_tag="ROE18_000573"
                     /inference="COORDINATES: protein motif:HMM:NF027409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650773.1"
                     /translation="MKLEDIFVYMVLMIVSFIAGLIGIVTKNKLSKALNLKGKFTLFL
                     KGMLGSMFVAYLVFEIVNYLNFGIKLSVAVGGFAAYMGTDALLKIEQLVEKLINKKME
                     KL"
     gene            759..1391
                     /locus_tag="ROE18_000574"
     CDS             759..1391
                     /locus_tag="ROE18_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDX3650774.1"
                     /translation="MNELGIICDIKEGKAKVAIGDMVTDFLSVFQSLANSYAVSFSPL
                     RIGEQVLVIPVRGDLNSGVILRGLYQEKHRAKNTDENTFNIDFEDGTHLEYNSKSSTL
                     KLDVVKNINITCVDKTTHNQNNTLNTKNHTTNANTITLNAPSINLNGNTQIAGAISTS
                     GEGGASGTFSIKGNLNLIGNLQVSGNISDAKGDLTNHTHSCTCGATASPR"
     gene            1400..1591
                     /locus_tag="ROE18_000575"
     CDS             1400..1591
                     /locus_tag="ROE18_000575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650775.1"
                     /translation="MKELFLLLFSLVFFMLFCMGAFYAFLNLNFFIKSIFIGFFIAFM
                     FLGFSQMLENIFEFYKGLK"
     gene            1588..1878
                     /locus_tag="ROE18_000576"
     CDS             1588..1878
                     /locus_tag="ROE18_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HDX3650776.1"
                     /translation="MNYMVSIEESIKDILITPLGSRVMRPEYGSLLYTLIDRKIDDDF
                     KIKLTRYTAEAISKWEKRVKLKGVRLNECKDNKLSITLLFENYGDLTMELGK"
     gene            1875..3041
                     /locus_tag="ROE18_000577"
     CDS             1875..3041
                     /locus_tag="ROE18_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009650649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDX3650777.1"
                     /translation="MSELLSANDSYFKQSFLKDIPYPQIIEELDYEKLLKAYEELFKS
                     FLKDNVELLESDPFKAILEALAYREMIIRARINESIKATYLHYAKGSDLDNVVANGYL
                     IQRLKGVKPAAKVEFELNTLLTYDVIIPKGAIFSNEKADLATLKEEVVIKKGQSKAQG
                     ILELDEFIQSKESKTEFLQTPLPFVAKIKQLEFFKGGASEEGDEALRERAVMSVHRFS
                     TAGSEKGYIYHALSASAKVASIKALNNGAGKVRVIIKSEDELSVDVVKEYLSADERRP
                     LTDEVSVELAKKREFIVDAKLLLLELSRANEISEKINALQKDFDLSVDLALGFIYKCL
                     HQDGVYKSEILSIKEKIINEEEQELKDLPLENIIIADDEFATLSFSLSYEKAVL"
     gene            3038..3658
                     /locus_tag="ROE18_000578"
     CDS             3038..3658
                     /locus_tag="ROE18_000578"
                     /inference="COORDINATES: protein motif:HMM:NF021220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HDX3650778.1"
                     /translation="MNTLILNHHPKQSKAIDLSAKTRFEDLNLASITNLALNCDERLL
                     PILANAYDVSIDGLETKEARKLISKALLLDRYNGTTWAIKEALRAVFPTAVVKEWFNY
                     GGKPYFFKVKVSTTNVSFDERTLNTLERLIYDFKNVRSVLEAIEIEIESKNDSFNASV
                     EISGETIEILPFQTTQIENNQKPSLNAMGVFMCEITRTNIDFKGVY"
     gene            3658..4689
                     /locus_tag="ROE18_000579"
     CDS             3658..4689
                     /locus_tag="ROE18_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDX3650779.1"
                     /translation="MAKSEYYTILTKIGIAKFIAARASGNGINLKSFKLSSKVILPSE
                     EMQSLEEIVYEANISSKSVDESNPNYVNLMCHVPSDVGGFEVNAVGIYDEAGDLLAVG
                     NVPRTYKPILKEGSAKELMIKIVMELSNAEEVILKLDPSVIMASRDYVDAIKVELNLK
                     IDALTQKYDAEFKKVWGEFAKYLLENKFNTEIAKYVTLATNQTIAGAKNFTKLPTSSI
                     KATNDNQFVNLATLKEQAPSLIGGLGVNQAWQNVSRAFDVTYTNNTGKPIAAKFQVNA
                     SASGGVSFSCSEQFVVSMFQTSLSNGGVSRTYFGFGIIPPNGQYRLNTPEHSGFYPSK
                     SIVSFMELR"
     gene            4714..5220
                     /locus_tag="ROE18_000580"
     CDS             4714..5220
                     /locus_tag="ROE18_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HDX3650780.1"
                     /translation="MKYFIDKNDNNQIYAYEDEVSDEQIKIGLTPINEEEFNSLINPP
                     KSEEELLNEAKELKINEINAKKENILNGGFSFKGKIYQSSNEDQLRINGAVTNALVNP
                     NLIPYIDWIALDNSTTRFSVDEFKLFASSMAYFVQETIFKASALKEKARNAQSKEELD
                     LIVWESEK"
     gene            5217..5588
                     /locus_tag="ROE18_000581"
     CDS             5217..5588
                     /locus_tag="ROE18_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1353 domain-containing protein"
                     /protein_id="HDX3650781.1"
                     /translation="MTKTELKRVCVKPYDKDRFEVISDYAFSLPNYKGIVPQGFKTDG
                     ASIPRLFWSLFPPFKSEYFSACVVHDFLCEKANSRTDYRTADLALKEAMTLLGCSRLK
                     IFVFYHSCNLYHVIKCLIKGK"
     gene            5689..6696
                     /locus_tag="ROE18_000582"
     CDS             5689..6696
                     /locus_tag="ROE18_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650782.1"
                     /translation="MKDYGISFIPDTNQGSKEPSEPIISDKLNAQKVNELIDKKLKLF
                     KEELVNKEELKSLIEEILQDQNFQNTNIKISKTPPNYNTQAKVGEIWAVVESKKQLFI
                     CTANDNDFTSWVDLLGDGSNDIAPKEKIIITFDNTTTGGQYGGCMSDLRLGFENGFAT
                     PNKVQDEYENAKFTMTKDGNGLNRSDFTIDSNPIAGENQILGTIKTSGIYQETYHKIA
                     HVFKKYNGGADECCLWSSSGSREVSIELENTPMPNKLFARGNGYYGQTEITNVRVKKS
                     IFIGEQEIQSEDFNVEKLEASSDTYGDYAFLFEISKQDQIVMKKELNLNPKKNKKYKK
                     M"
     gene            6715..7908
                     /locus_tag="ROE18_000583"
     CDS             6715..7908
                     /locus_tag="ROE18_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath family protein"
                     /protein_id="HDX3650783.1"
                     /translation="MAANYGVNFNISNGAASPIKVQSDTPIGIAASLKGASKEMIYTK
                     AGYESVEAMPIFAFSNVNKAKEFVNDLIKENNLQDFRLLDTLECINLQNVNNVIIVSF
                     FEESEESENTLTNIVNAIEAFKKAKHKTGFSPDLIITPYYSHEAGVKAKLESVASSMN
                     ITAIVDLYATNVGEAINTMEAFSSKRLIATWPQVQILNTQGKYAYVPQSPFIAGLIAH
                     TDGDKEYGFSDSYSNRVMNGVTGTEYFIEFINGFDCDAERLRNAHISTCILSEGYRSW
                     GGETSHEDTIWQDLARVRTFDRIALAGQKAAFKAIDKKASELYFIKISIEELLRDLKG
                     AKVLIGYEVSWDEERNTDANVSAGKFYLNIKMMNNPIVKQITLEFIYSDKWASDLIKT
                     ISADS"
     gene            7935..8444
                     /locus_tag="ROE18_000584"
     CDS             7935..8444
                     /locus_tag="ROE18_000584"
                     /inference="COORDINATES: protein motif:HMM:NF016846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HDX3650784.1"
                     /translation="MKRIIGEVIQEGNIYIDGQGYLGVVRNLKLPDIEQEMIETKGVL
                     GANYSSGVLKPLEISFKLAVVDPVLYAAFFHTTFSEIKAPLLFRESVHKGGKNYGISA
                     EFLGEFISISESDHESGKEVEAEIKMAVHFYMQRRNNIPIITYDHKNTILMINGVDMM
                     SDVRSNLTL"
     gene            8597..8836
                     /locus_tag="ROE18_000585"
     CDS             8597..8836
                     /locus_tag="ROE18_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HDX3650785.1"
                     /translation="MKEKIIKLENGEELKMREPNVRVLKNAANKSEKEMEQTICMIAA
                     LTNKQESEIEDLNLKDFKALQDALKDFLVEAGVIA"
     gene            complement(8948..9253)
                     /locus_tag="ROE18_000586"
     CDS             complement(8948..9253)
                     /locus_tag="ROE18_000586"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650786.1"
                     /translation="MKVLKFINDDIISHIALLLTTLIPAFYISYQSASDGFFNTMAIF
                     IFSYFISIIITAILVMIMPPIALLLILPTWLIVISLDFILFAILKIYFLKNKTIKNS"
     gene            9295..11517
                     /locus_tag="ROE18_000587"
     CDS             9295..11517
                     /locus_tag="ROE18_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDX3650787.1"
                     /translation="MENAGSIGIGVILGLAIKNASAVGKVVKDFSNLEKIAAKTKLGI
                     SGLQKELNTLKLNANLRAELKAQRKGLQDELFSLGNIISGGIVGKSIKVGIDFESAMA
                     DVKKVTDLSEGHTLEGLKQDILDLSKKLPMTAEEIANIVAEGGKLGLASKEALEFGKT
                     ATAMGVAFEMSANEAGEAIGGLMANLQTDVKGIKDLGDSINYLADKGSSDAKNIVNIV
                     SRIGGMGNLIGLQRENMAALAATLDEVKIPAEVAGTAISSMFTKLSTADTLGAKAEEA
                     FSQLGLSGEFMKKALNRNSQEAINILLSRIKTLDKESQIGVITNIFGNDSGTIRAMAT
                     LVNGYDRYQELLKMTNSEEKKGSMDKELINKCETTASILKILGNNISALAIKFSDALL
                     PVVKLVASGFSFVIDIVDTLLSKFPVLSTIVATATTVFLLAKPAVLAYAIAKNYLKDC
                     TILLKSALIKTRIHLLAFRNSCILSNITLKAKTVTTTIYTTSLKALSFVLGGLNKVFK
                     AVAIGIRVLSMAMMSNPIGLILGGIAIVAGLIIANWDKVKSWFKSFIEWLKPVWEPIY
                     NVIKAVFDKCALVFTSFKDIIMSVASPLAEFLNSIWQGVGDFFYSIFGSLFDWFASKL
                     SWVGDMISSISGFIKDALDFVGLGDDEEVKISQSEQNKEKVFTTNTYKDELAETKSIN
                     HTPSFNNGNINISVNGTFNIATKDGNFNMQEFANTIQKSVFDALRKQEQNKINTTIYG
                     "
     gene            11521..12009
                     /locus_tag="ROE18_000588"
     CDS             11521..12009
                     /locus_tag="ROE18_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDX3650788.1"
                     /translation="MSEYIEIKGLENFFKACDKLIDMDKHGQSIMAGAGESIRNSIID
                     SFKNECSIFNGKWKSLKPATIKQKIKDGKNKGILKRDGDLSNALNWQSEPTKSGVEVF
                     NNIQTKNGFKYGYVHQWGNRKRKIPQRAFLPIDNNKVLHPSIRSVIYKDTKDFIVKIV
                     KK"
     gene            12114..12929
                     /locus_tag="ROE18_000589"
     CDS             12114..12929
                     /locus_tag="ROE18_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004297138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HDX3650789.1"
                     /translation="MKNNTDKFLKTSTLTKPTRTTLKAPFAWVGGKNYLAKEIIALMP
                     EHKSYIEVFGGALSVFYQKSASKIEVINDINDELINLHLCIRNKPQSLANVLNSMIIS
                     RKIFHMLKNKEIKPRNDLERAAFYFYLISTSFGSSMGQFAMSKQRAPKRLCRDFSLHT
                     KRLKNASIENKSFEYILKEYDYNEALFYLDPPYVGTENYYKNTGGFGLKEHELLCNLL
                     KNIKGKFMLSYNDCELIRELYKDFNFKELKVRYSLNNNVLKRKESKELLIMNF"
     gene            complement(12959..13246)
                     /locus_tag="ROE18_000590"
     CDS             complement(12959..13246)
                     /locus_tag="ROE18_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650790.1"
                     /translation="MSKVIVDIKKGFSKTFINAICNHNNELVLEYLKNGMSATKECMG
                     EEPMFYAITHNNFGAILLLLKYGAILDKEYLEESNKDFSKEALKFLSSLLK"
     gene            complement(13326..13520)
                     /locus_tag="ROE18_000591"
     CDS             complement(13326..13520)
                     /locus_tag="ROE18_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650791.1"
                     /translation="MKYPNVYVKLVGEDGNAFSILARVSKALKKAGVSKEEISKFQKE
                     AMSSDYNHLLNVVQDWVNTN"
     gene            complement(13530..13850)
                     /locus_tag="ROE18_000592"
     CDS             complement(13530..13850)
                     /locus_tag="ROE18_000592"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650792.1"
                     /translation="MKDIKNYTDKELKEKIIQDLESEFRILYKKLLKEKDYLARDNIL
                     ELMTIYNMGINSYSIAKRFEMNEDKSLIQVPLFERYIIGRKFVVKYNDEKQRYELKST
                     FCEF"
     gene            complement(13931..14560)
                     /locus_tag="ROE18_000593"
     CDS             complement(13931..14560)
                     /locus_tag="ROE18_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HDX3650793.1"
                     /translation="MQMQEVIEKLKDILASEGKRDLKTKDIAKELGINPDTFNSMKFR
                     NSIPYPQILNFLNKRNISINYFFYGVSPKDQLECENKYKILKLYKTNASLGGGGINDL
                     IDSSDLIIDEKVLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICVIN
                     TRDGLFIKQVLKQNDGVMLHSLNPLYKDIFYKNGDFLLIGVVIGELSRL"
     gene            complement(14645..>15974)
                     /locus_tag="ROE18_000594"
     CDS             complement(14645..>15974)
                     /locus_tag="ROE18_000594"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650794.1"
                     /translation="RSDNLSLKEILGLVNLLKEEKECNVVMIFHKGELEEQDSNSTIN
                     DKEKQAKQDNSKNWYQTYKEKVIDCEITIKNNDEAAKAIIKEKIDQYTKITDEIRNII
                     ENIIFEIYKEHCNGNLRLLFHALEHIDYFNKHCFLKFREYDDKQAFAIALKLNYQSLI
                     FQTKKYLSIKIETIDLSSGFYHLYEKYLKNMFYLSKKEKEQVRYDFNQTLKTNFYFKL
                     QNCKMEHLTGNLSDEQFVKVVENSLLEIDFYSKGGIIYYPYDFYQDLFSTYTQITKKK
                     LSNIEEKINKHYIEALVTEELEFDFRDNYKSDKDLLKLLENEKWKRYYEDTKEKYITS
                     KYENINAFINSCENIESSFNSEAIKQYTFFKKEELIQLFKENNDFYKKFFNHFSKNMN
                     INHNFNDDLNNNLFRAYLDFLDLDENKIKKSIVLKYINSRNSVLRKLLIE"
BASE COUNT         5842 a         2088 c         2744 g         5300 t
ORIGIN      
        1 ggataaggtt tttattaaag ataaaagctg ccagagtgaa cttaaagctt ataaagaatt
       61 atttaatatt ttaggagcaa aaaagtgaat gataaaatga gaattttcct attaattata
      121 ccttttgttt ttttaagcgc ttgtgcttct aaagatattt tgattaaaac tgaaatcaaa
      181 gaagttaaag ttcctattaa atgcccttta aaacttcctt taaagccttt agacaaaaaa
      241 gacttagaaa gtgctaaaaa aatctctaaa tattacttag aagttgaaaa tatagccaaa
      301 ctttgcacag gagagaaaga tgaaagaaaa taataaaatg ataaatcaaa aaagcattgc
      361 aaaagatctt cttatagctc ttttgttttc aacttttgca ttagctttat tatatttatt
      421 tgaaattttt acaaggaact agcaatgaaa ttagaagata tatttgtata tatggtttta
      481 atgatagtaa gctttatagc tggacttata ggaattgtaa caaaaaataa attaagcaaa
      541 gctcttaatt taaaaggtaa atttacactc tttttaaaag gtatgctagg ctctatgttt
      601 gtagcatatc tagtttttga aattgtaaat tatcttaatt ttggcataaa gcttagcgtt
      661 gcagtgggtg gttttgcagc ttatatgggg acagatgcat tgcttaaaat tgagcaactt
      721 gtagaaaagt taattaataa aaaaatggaa aaactataat gaacgaactt ggcatcattt
      781 gcgacattaa agaaggtaaa gctaaggttg ctattggaga tatggtaacg gattttttaa
      841 gtgtttttca aagtctagct aattcttatg cagtgagctt ttctccttta agaataggag
      901 agcaagtatt agtcatacct gtgcgtgggg atttaaatag tggagttatt ttgcgtgggc
      961 tttaccaaga aaaacataga gcaaaaaaca cagatgaaaa tacttttaat atagattttg
     1021 aagatggaac gcatttagaa tacaactcta agagtagcac tttaaaactt gatgtggtta
     1081 aaaatataaa tatcacttgt gtagataaaa ccacccataa ccaaaacaac accttaaata
     1141 ctaaaaatca tactacaaac gctaatacca taacgcttaa cgctccaagt attaatttaa
     1201 atggtaatac tcaaattgca ggagcaattt ctacaagtgg cgaaggtggg gcaagtggga
     1261 cttttagcat aaaaggaaat ttaaacttaa ttggtaattt acaagttagc ggaaatataa
     1321 gcgatgctaa aggtgattta acaaatcata cccattcttg tacttgtggt gccacagctt
     1381 cgccaagata ggaaaaacta tgaaagaatt atttttgctt ttattttcat tagtcttttt
     1441 tatgctcttt tgcatggggg cattttatgc ttttttaaac ctaaactttt ttatcaaaag
     1501 catttttata ggctttttta tagcttttat gtttttagga ttttcgcaaa tgctagaaaa
     1561 catttttgaa ttttacaaag gtttaaaatg aattacatgg taagcatcga agaaagtatc
     1621 aaagacattt taatcactcc tttaggctca agagtaatga gaccagaata tggttcttta
     1681 ctttatacac tcatagatag aaaaatcgat gatgatttta aaatcaaact tactagatac
     1741 actgcagaag caatttcaaa gtgggaaaaa agagtaaagc taaaaggtgt gagacttaat
     1801 gagtgtaaag acaataaatt aagcattacc ttgctttttg aaaattatgg ggatttaaca
     1861 atggagctag gcaaatgagt gagcttttaa gtgcaaatga tagctatttt aaacaaagct
     1921 ttttaaaaga cattccttac ccacaaatca tagaagagct tgattatgaa aagcttttaa
     1981 aagcctatga agaacttttt aaaagctttt taaaagataa tgtagagctt ttagaatctg
     2041 acccttttaa agccatttta gaagctttag cttatagaga aatgataatt agagcaagaa
     2101 ttaatgagag tataaaagca acttatcttc attatgcaaa gggaagtgat ttagataatg
     2161 tagtagctaa tggctattta atacaaaggc ttaaaggggt taaacccgca gctaaagtag
     2221 agtttgaatt aaatacttta cttacttatg atgtcatcat cccaaaaggt gcaatttttt
     2281 caaatgaaaa agcagacctt gccactttaa aagaagaagt ggtgattaaa aaagggcaaa
     2341 gtaaagcaca aggtatttta gaacttgatg aatttattca aagcaaagaa agtaaaaccg
     2401 agtttttaca aaccccactg ccttttgtgg ctaagattaa acaactagaa tttttcaaag
     2461 gtggagccag tgaggaaggc gatgaagcct taagagaaag ggctgtaatg agtgtacatc
     2521 gcttttcaac cgcaggaagt gaaaaaggct atatctatca cgctttaagc gcaagtgcaa
     2581 aagtagcttc cataaaagct ttaaacaatg gagcaggaaa agtaagagtt atcattaaaa
     2641 gtgaagatga attaagcgtt gatgtggtta aagagtattt aagtgcggat gagcgaagac
     2701 ctttaactga tgaagtcagc gttgagttag ctaaaaaaag agagtttatc gtagatgcca
     2761 aacttttgct tttagaatta agccgtgcta atgaaataag tgaaaagatt aatgctttgc
     2821 aaaaggactt tgatttaagt gtggatttag cactgggatt tatttataaa tgtcttcatc
     2881 aagacggagt ttataaaagc gaaattttaa gcattaaaga aaaaatcata aatgaagaag
     2941 agcaagaatt aaaagacttg cccttagaaa atataataat agctgatgat gagtttgcaa
     3001 cccttagctt ttcacttagt tatgaaaagg cggtgctatg aatacactaa tactaaacca
     3061 ccatccaaaa caaagcaagg ctattgattt aagtgctaaa acaagatttg aagatttaaa
     3121 tttagctagt atcacaaatc tagctctaaa ttgcgatgaa agattattgc caattttagc
     3181 taatgcttat gatgtaagca tagatggttt agaaacaaaa gaagcaagaa agcttatatc
     3241 taaagcctta cttttagata gatacaacgg cacaacttgg gctataaaag aagctttaag
     3301 agccgtattt cctactgcag tggttaaaga gtggtttaat tatggtggaa agccttattt
     3361 ttttaaagtt aaagtaagca caactaatgt tagctttgat gaaagaacgc ttaatacttt
     3421 agaaagacta atttatgatt ttaaaaatgt tagaagcgtt ttagaagcaa ttgaaataga
     3481 gattgaaagt aaaaatgata gttttaatgc tagtgtagaa ataagtggag aaactataga
     3541 aatcttacct tttcaaacca cgcaaattga aaacaatcag aaaccaagtt taaatgcaat
     3601 gggtgttttt atgtgtgaaa taacaagaac taatattgat tttaaaggag tgtattaatg
     3661 gcaaaaagtg aatactatac catactaaca aaaattggca ttgctaaatt tattgccgca
     3721 agagcaagtg gaaatggtat caatttaaaa agctttaaat taagttcaaa agttattttg
     3781 cccagcgaag aaatgcaaag cttagaagag attgtttatg aagctaatat tagtagcaaa
     3841 agcgtggatg aaagcaatcc aaactatgtg aatttaatgt gtcatgtgcc aagcgatgtg
     3901 ggcgggtttg aagttaatgc agtaggcatt tatgatgaag caggagattt gcttgcagta
     3961 ggaaatgtcc cacgcactta taaacctatc ttaaaagaag gcagcgctaa agagcttatg
     4021 ataaaaattg tcatggagct ttctaatgca gaggaagtta ttttaaaact agatcctagt
     4081 gtgattatgg caagtcgtga ttatgtggat gctattaaag tggaactcaa tcttaaaatt
     4141 gatgctttaa cgcaaaaata tgatgcagag tttaaaaaag tatggggtga gtttgctaaa
     4201 tatcttttag aaaataaatt taatacagaa attgccaaat atgttacttt agctactaat
     4261 caaaccattg caggagctaa aaactttacc aaactaccta caagctctat aaaagctaca
     4321 aatgacaatc aatttgtaaa tttagctacc ttaaaagaac aagctcctag cttaatagga
     4381 ggattgggag taaatcaagc ttggcaaaat gtttcaagag cctttgatgt aacttataca
     4441 aataatacag gaaaacccat agcagccaaa tttcaagtta atgctagtgc aagtgggggt
     4501 gtcagttttt cttgtagtga gcaatttgta gtttctatgt ttcaaacttc attatccaat
     4561 ggtggagtaa gtcgaactta ttttggtttt ggaatcattc caccaaatgg gcaatacaga
     4621 ttaaatacac cagaacacag cggattttac ccaagcaaaa gcattgtatc ttttatggag
     4681 cttagataag catcaagcaa ataaggagaa aaaatgaaat attttataga caaaaacgat
     4741 aataatcaaa tttatgctta tgaggatgaa gtgagcgatg agcaaattaa aataggctta
     4801 acacctatta acgaagaaga atttaactct ttaataaatc ctcctaaaag cgaagaagag
     4861 cttttaaacg aggcaaaaga gttaaaaatc aacgagatta atgcaaaaaa agaaaatatt
     4921 ctaaatggtg gattttcttt taaaggtaaa atctatcaaa gttctaatga agatcagtta
     4981 agaattaatg gagcagtaac caatgctctt gttaatccta atttaattcc ttatattgat
     5041 tggattgcgc ttgataattc aactacaaga tttagcgtag atgagtttaa actctttgca
     5101 agtagcatgg cttattttgt gcaagaaact atttttaaag caagtgcttt aaaagaaaaa
     5161 gctagaaatg cacaaagcaa agaagaactt gatttaattg tttgggagag tgaaaaatga
     5221 ctaaaacaga attaaaaagg gtttgtgtaa agccctatga taaagacagg tttgaagtga
     5281 ttagtgatta tgctttttct ttgccaaatt ataaaggcat tgtaccacaa ggctttaaaa
     5341 ctgatggtgc aagtatccca cgcctttttt ggtctttgtt tccacctttt aaaagtgagt
     5401 attttagcgc ttgtgtggtg catgattttt tatgcgaaaa agcaaattca agaactgatt
     5461 ataggacagc tgatttagca ttaaaagaag ctatgacttt gcttggatgt tcaagactta
     5521 aaatctttgt attttatcat tcttgcaatc tttatcatgt aataaaatgc ttgataaaag
     5581 gaaaataaaa aaaaggtgag ctacccacgc agtgggacgg gggctttagt aaaagcgact
     5641 ttgggcggat tttattcgca caaagtgaaa gcataaaaag gagttaaaat gaaagattat
     5701 ggaatttctt ttattccaga tactaatcaa ggctcaaaag agccaagtga acctataatt
     5761 agtgataagc ttaatgctca aaaagttaat gagcttatag ataaaaaact aaagcttttt
     5821 aaagaagagc ttgttaataa agaggagctt aaaagtctca ttgaggaaat tttacaagat
     5881 caaaatttcc aaaatacaaa cataaaaata tcaaaaactc cacctaacta caatacacaa
     5941 gctaaagtgg gagaaatttg ggcggttgta gaaagtaaaa agcaattatt tatttgcact
     6001 gctaatgata atgattttac aagctgggtt gatttactag gagatggtag caatgatatt
     6061 gcccctaaag aaaaaatcat tatcacattt gataacacta caacaggtgg acaatatggg
     6121 ggttgtatga gtgatttaag acttggtttt gaaaatggtt ttgctactcc aaataaagtt
     6181 caagatgaat atgaaaacgc aaaatttact atgactaaag atggtaatgg tcttaataga
     6241 agcgatttta ctatagattc taatcctatt gcaggagaaa accaaatttt aggaacgatt
     6301 aagacaagtg gtatttatca agaaacctat cacaaaatcg cccatgtgtt taaaaaatat
     6361 aatggtggcg ctgatgagtg ttgcttatgg tctagttcag gaagtagaga ggtaagcata
     6421 gaacttgaaa atacaccaat gcccaataag ctttttgcta gaggtaatgg atattatggt
     6481 caaacagaaa ttaccaatgt aagagtaaaa aaatccattt ttataggtga gcaagaaatt
     6541 caaagtgaag attttaatgt tgaaaagtta gaagctagtt ctgatactta tggagattat
     6601 gcttttttat ttgaaatttc taaacaagat caaattgtta tgaaaaaaga gcttaattta
     6661 aatcctaaaa aaaacaaaaa atacaaaaaa atgtaaagaa ataaggagta aataatggca
     6721 gcaaattatg gagttaattt taatattagc aatggtgcgg caagtcctat taaagtgcaa
     6781 agtgatacgc ctattggtat tgcggctagc ttaaaaggtg caagtaaaga aatgatttac
     6841 acaaaggctg gttatgaaag cgtggaagct atgccaatct ttgccttttc aaatgtaaat
     6901 aaagcaaaag aatttgtaaa cgatttaatc aaagaaaata acttacaaga ttttagactt
     6961 ttagatactt tagaatgtat caatttacaa aatgtaaaca atgttataat cgtcagcttt
     7021 tttgaagaaa gcgaggaaag tgaaaacact ttaaccaata ttgttaatgc catagaagcc
     7081 tttaaaaaag ccaaacataa aacaggcttt agtcctgatt taatcattac tccttattac
     7141 tcacatgaag caggagtaaa ggctaagctt gaaagtgtgg caagttctat gaatatcaca
     7201 gctattgtgg atctttacgc tacaaatgtt ggcgaagcta ttaatacaat ggaggctttt
     7261 agctctaaaa gattaattgc cacttggcca caggttcaaa tcttaaacac acaaggaaaa
     7321 tacgcttatg ttccacaaag tccatttatt gcagggctta tagcccatac agatggggat
     7381 aaagaatatg gctttagtga ttcttactca aatagagtga tgaatggggt tactggtaca
     7441 gagtatttta tagagtttat caatggcttt gattgtgatg cagaaagatt aagaaatgct
     7501 cacatttcaa cttgtatttt aagtgaaggt tatcgctctt ggggtgggga gactagccat
     7561 gaagatacga tttggcaaga tttagctcgt gtaagaactt ttgatcgtat agccctagca
     7621 ggacaaaaag cagcttttaa ggctattgat aaaaaagcaa gtgaattata ttttataaaa
     7681 atcagcattg aagaattgct aagagattta aaaggagcta aggttttaat tggttatgag
     7741 gtaagctggg atgaagaaag aaacacagat gccaatgtga gtgctggtaa gttttatcta
     7801 aatataaaaa tgatgaataa tccaatcgtt aaacaaatca ctttagagtt catctactct
     7861 gataaatggg cgagtgattt gattaaaact attagtgcgg atagttaata aatttttaca
     7921 aggagaaaat aaaaatgaaa agaataattg gcgaagttat acaggaaggt aatatttata
     7981 tagatggtca aggttatctt ggagtggtta gaaatttaaa attgcctgat atagaacaag
     8041 agatgattga aaccaaagga gttttaggag caaattatag tagcggggtt ttaaagcctt
     8101 tagaaattag ctttaaatta gccgttgttg atccagtgct ttatgcggct ttctttcata
     8161 ctacttttag cgagattaaa gctcctttgc tttttagaga aagtgttcac aaaggtggaa
     8221 aaaactatgg tattagtgct gagtttttag gagagtttat aagcataagt gaaagtgatc
     8281 atgaaagtgg aaaagaggtg gaagctgaaa ttaaaatggc agttcatttt tacatgcaac
     8341 gccgcaataa cattccaatc attacctacg atcataaaaa cactatttta atgataaatg
     8401 gggtggatat gatgagtgat gtaagaagca atttaaccct ttaaacactg attaatcgga
     8461 gtttaattaa caatactggg attttaggat taaagtttgg ctttttgggc attgcgtagc
     8521 aatgggtggg gaagccttta gttgcttctc aggcggaatt acttccgcca taaagaagga
     8581 taaaaaggaa agaaaaatga aagaaaaaat aatcaaactt gaaaatggcg aagaattaaa
     8641 aatgagagag ccaaatgtgc gtgtactcaa aaacgccgct aataaaagtg aaaaagaaat
     8701 ggagcaaact atttgtatga tagctgcact taccaataag caagaaagtg aaattgaaga
     8761 tttgaatctt aaagatttta aagctttaca ggacgctctt aaagattttt tggtagaagc
     8821 aggagttata gcttagaggc tatagctctt ataagtcata ctttgcattg gggattaaat
     8881 gaagttttag atttaagctt agatgagttt gaagaagctt tggaaatttc aaaagaattt
     8941 ttaaaggcta agagtttttg attgttttat ttttcaaaaa ataaattttt aaaatagcaa
     9001 aaagaataaa atctaaactt attacaatta gccaagtggg taaaataagc aataaagcaa
     9061 tgggtggcat aatcatcact aaaatagcag ttatgataat gcttataaaa taagaaaaaa
     9121 taaaaatagc cattgtatta aaaaaaccat cacttgcact ttgatagctt atgtaaaaag
     9181 caggtatgag cgttgttaat aataaggcaa tatgtgaaat tatatcatcg ttaataaatt
     9241 ttaaaacttt catagtaaag attttaaaat acaatcgctt aaaaagggtt gaatatggaa
     9301 aatgctggaa gtattggaat tggtgttatt ttaggactag cgattaaaaa cgcaagtgcc
     9361 gttggcaagg tggttaaaga ttttagcaat ttagaaaaaa tagcagcaaa aactaaactc
     9421 ggcattagtg gattacaaaa agaattaaac actcttaaac tcaatgccaa tttaagagcg
     9481 gaattaaaag ctcaaagaaa aggtttgcaa gatgaacttt tttctctagg aaatataata
     9541 agtggcggta ttgtagggaa aagtataaaa gttggtattg attttgaaag tgctatggct
     9601 gatgtaaaaa aagtaacaga tcttagtgaa ggtcatacac tagaaggctt aaaacaagat
     9661 attttagatt tatccaaaaa acttcctatg acagcagaag aaattgcaaa tatagtggca
     9721 gagggtggaa aacttggtct tgcctctaaa gaagctttgg agtttggtaa aactgctact
     9781 gctatgggtg ttgcttttga aatgagtgcc aatgaagcag gagaagccat aggtggtctt
     9841 atggcaaacc ttcaaaccga tgttaaaggc attaaagatt taggtgatag cattaactat
     9901 ttagctgata aaggttcaag tgatgccaaa aatatagtaa atattgtgag cagaattgga
     9961 ggaatgggaa atcttatagg acttcaaaga gaaaacatgg cagctcttgc tgctacgctt
    10021 gatgaagtaa agatcccagc tgaagttgca gggactgcta tttctagcat gtttactaaa
    10081 ctttcaactg ctgatacttt aggagctaag gcagaagaag ctttttcaca attaggtctt
    10141 agcggggagt ttatgaaaaa agctttaaat cgaaattcgc aagaagcaat caatatttta
    10201 ctttcacgaa taaaaacgct tgataaagag tctcaaatag gtgttattac taatattttt
    10261 ggcaatgata gtggcacgat tagagctatg gcaactttag ttaatggtta tgatcgttat
    10321 caagagcttt taaagatgac aaattcagaa gagaagaaag gttcaatgga taaagagctt
    10381 attaataagt gtgagactac agcttctata ttaaaaattt taggaaataa tataagtgct
    10441 ttggcgatta aattttcaga tgctttactc cctgtagtta aattagtcgc ttcaggattt
    10501 agctttgtaa ttgatatagt agatacctta ctttcaaaat ttccagtgct tagtaccatc
    10561 gtagctacag ctacaacagt ttttttgctc gccaaacctg cagtcttagc ttatgctatt
    10621 gctaaaaact atcttaaaga ttgcaccatt ttacttaaaa gtgctttgat taaaacaaga
    10681 atacatcttt tagcttttcg taattcttgt atattatcta atattacttt aaaagcaaaa
    10741 accgtcacaa ctactattta cacaacctcc cttaaagcct tatcttttgt tttaggtggg
    10801 cttaataaag tttttaaagc cgtagctatt ggtattagag tgttaagcat ggctatgatg
    10861 agtaatccca ttggtcttat tttagggggc attgcaatag tggctgggct tattattgca
    10921 aattgggata aggttaagtc ttggtttaaa tcttttatag aatggcttaa acctgtttgg
    10981 gagcctatat acaatgtcat taaagcagta tttgataaat gtgcccttgt atttacaagt
    11041 tttaaagata ttattatgag tgttgcttct ccattagctg agtttttaaa ttctatttgg
    11101 caaggtgttg gggatttctt ttatagtatt tttggttctt tatttgattg gtttgcttct
    11161 aagctttctt gggtaggaga tatgatctca tctataagtg gctttataaa agatgctctt
    11221 gattttgtag ggcttggaga tgatgaagaa gttaagataa gccaaagtga acaaaacaaa
    11281 gaaaaagtct ttactacaaa cacttataaa gatgaattag ctgagacaaa aagtataaat
    11341 catactccaa gctttaataa tggcaatatc aatataagtg ttaatggtac ttttaacata
    11401 gcgactaaag atggcaattt taatatgcaa gaatttgcaa atactataca aaaaagtgta
    11461 tttgacgctt taagaaagca agaacaaaac aaaattaaca ctacaattta tggataaaat
    11521 atgagtgaat atatagaaat aaaagggctt gaaaactttt ttaaagcttg tgataaatta
    11581 atagatatgg ataaacacgg gcaaagcatt atggcgggtg ctggagagag tataagaaat
    11641 agcattatag actcttttaa aaacgaatgc agtattttta atggaaaatg gaaaagctta
    11701 aaaccagcta ccataaaaca aaagataaaa gatggtaaga ataaaggaat tttaaaaaga
    11761 gatggggatt taagtaatgc tttaaattgg caaagcgaac ctaccaaaag cggagtagaa
    11821 gtctttaata atatacagac taaaaatggc tttaaatatg gttatgttca tcaatgggga
    11881 aacagaaaaa gaaaaattcc tcaaagagct tttttaccca tagataataa caaagtcttg
    11941 cacccaagta taagaagtgt gatttataaa gatactaagg attttattgt aaaaattgtt
    12001 aagaagtgat ggcaaggaag actaaagcct tcctttttct aaaaactagc aaaagtatta
    12061 tagctttatt tttaaagact agctttttaa attttatttt gaaaggagtt tgtatgaaaa
    12121 ataatacaga caaatttcta aaaactagca cacttactaa acctacaaga actacactaa
    12181 aagctccgtt tgcttgggtg ggtggtaaaa actatttagc taaagaaatc atcgctttaa
    12241 tgcctgagca taaaagctat attgaagttt ttggaggagc tttaagtgtt ttttatcaaa
    12301 aaagtgcttc aaaaatagaa gtcattaacg acattaacga cgagcttatt aatttacatc
    12361 tttgtataag aaacaaaccc caaagcctag caaatgtgct taattctatg ataataagta
    12421 gaaaaatctt tcatatgctt aaaaataaag aaattaagcc aagaaatgac ttagaaaggg
    12481 ctgcttttta tttttatctt atcagtactt cttttggttc aagtatggga caatttgcta
    12541 tgagtaaaca aagagcacca aagagattat gtagggattt tagcttacat acaaaaagac
    12601 ttaaaaatgc cagtattgaa aataaaagct ttgaatatat tttaaaagaa tatgattaca
    12661 atgaagcttt attttattta gatccacctt atgtagggac tgagaattat tataaaaaca
    12721 caggaggttt tgggctaaaa gaacatgaac ttttatgtaa tttgcttaaa aatatcaaag
    12781 gtaaatttat gctttcttat aatgattgtg agcttataag agagctttat aaagatttta
    12841 attttaagga gttgaaagta aggtattctt taaataataa tgttttaaaa agaaaagaaa
    12901 gcaaagagct tttgattatg aacttttaaa agctaagaga atatttttat attctctttt
    12961 attttagcaa agagcttaaa aactttagag cttctttgct aaaatcttta ttgctttctt
    13021 ctagatactc tttatctaaa atagcaccgt attttaataa aagtaaaatc gctccaaaat
    13081 tattatgagt tattgcataa aacataggtt cttcgcccat gcattcttta gttgcactca
    13141 taccattttt aagatattct aaaacaagtt cattgttatg gttgcaaatt gcgtttataa
    13201 aagtcttgct aaaacctttt ttgatatcta ctattacttt actcatctta tctccttttg
    13261 ttttgataag acaagattag cttcgcttgg ctgaatgtgt gctgttgttt gacatctttt
    13321 tgaaatcaat ttgtattaac ccaatcttgc accacattta ataaatgatt ataatcacta
    13381 ctcatggctt ctttttgaaa tttacttatt tcttctttgc ttacacctgc tttttttaaa
    13441 gccttgctta ctcttgctag aatactaaaa gcattgccat cttcgccaac taatttcaca
    13501 taaacattag gatatttcat cttttctcct taaaattcac aaaaggtact ttttaattcg
    13561 tatctttgtt tttcatcatt atatttaact acaaattttc tacctataat atatctttca
    13621 aacaaaggaa cttgtataag acttttatct tcattcatct caaatctttt agcgattgaa
    13681 taagagttta tgcccatatt ataaatagtc ataagctcta atatattatc cctagcaaga
    13741 taatcttttt cttttaaaag ctttttgtac aaaatcctaa attcactctc taaatcttgt
    13801 atgatttttt cttttaattc tttatcggtg taatttttga tatctttcat gtttatctcc
    13861 ttttttgata gaacaacctt gtgttttaca ctctctgtga gattagcttg gcttagctta
    13921 ttgtgtgctg tcatagtctt gaaagttctc caattaccac accaattagc aaaaaatctc
    13981 catttttata aaatatatct ttatacaaag gatttaaaga atgaagcatt actccatcat
    14041 tttgctttaa aacttgtttt ataaaaagtc catctctagt attaatcaca caaatgcttt
    14101 tattcttaaa agttttattt ctatctatta cacaaatact tccatctttt ataagtggct
    14161 ccatactctc tccataacaa gtgataaact cacattcttt acttccaaaa aagtttaaaa
    14221 ccttttcatc gatgattaaa tcagagctat caatcaaatc atttatacca cctccaccta
    14281 aactcgcatt tgttttataa agctttaaaa ttttatattt attctcacat tctaattgat
    14341 ctttaggaga gacaccataa aagaaataat ttatacttat attcctctta tttaaaaagt
    14401 ttaagatttg tggataagga atggagtttc taaatttcat ggaattaaaa gtatcaggat
    14461 tgattcctaa ttctttggct atatctttgg tttttaaatc acgcttacct tcacttgcaa
    14521 gtatatcttt taatttttca atcacttctt gcatttgcat tttaatcctt tgattttaat
    14581 ttcaaagaat ttaaacataa aatttcaaaa agcaattaaa aacttttgtt ttgaaagtta
    14641 gcaattattc tattagtagc tttcttaata cactatttcg tgaatttata tattttaaaa
    14701 caatactttt ttttatttta ttttcatcta aatccaaaaa atccaaataa gctcgaaata
    14761 aattattgtt taaatcatca ttaaaattat gatttatatt catattttta gaaaaatgat
    14821 taaaaaattt cttataaaaa tcgttatttt ctttaaatag ttgtattaat tcttcttttt
    14881 taaaaaaagt atattgcttg attgcttcag aattaaaact actttctata ttttcacagc
    14941 tattaataaa agcattaata ttttcatact tgcttgttat gtatttttct ttggtgtctt
    15001 cataataacg cttccatttt tcattttcta ataattttaa aagatcttta tcagatttat
    15061 agttatcacg aaaatcaaat tctaattctt ctgtaacaag agcttctatg taatgtttat
    15121 tgattttttc ttctatattg cttaattttt tctttgtaat ttgtgtgtag gttgaaaata
    15181 aatcttgata aaaatcataa ggataataaa taattccacc ttttgaataa aagtctattt
    15241 ctaagagtga attttcaaca acttttacaa attgctcatc acttaaatta cctgttaaat
    15301 gttccatttt gcagttttga agcttgaaat aaaaattagt ttttagagtt tgattaaaat
    15361 catatcttac ttgttctttt tcttttttac ttaaataaaa catatttttt aggtattttt
    15421 cataaagatg atagaagcct gaagataagt cgattgtctc tattttaata gaaagatatt
    15481 ttttagtttg aaatattaat gattgataat ttaattttag agcaattgca aatgcttgtt
    15541 tatcatcata ttctctaaat tttaaaaaac aatgcttatt aaaataatct atgtgttcta
    15601 atgcgtgaaa taataatctt aaattgccat tgcaatgttc tttatatatt tcaaaaataa
    15661 tattttcaat aatatttctt atctcatccg taattttagt atattgatct attttctctt
    15721 ttataattgc ttttgctgct tcatcattgt tttttatggt tatttcacaa tcaataacct
    15781 tttctttgta tgtttggtac cagtttttac tattatcttg tttagcttgt ttttctttat
    15841 catttatagt tgaattactg tcttgttctt ctaattcacc tttgtgaaaa atcataacaa
    15901 cattacattc tttttcttct ttaagtaaat ttacaagtcc taaaatttct ttcaaagaaa
    15961 gattatctga tctt
//
LOCUS       DAPOLW010000026        15937 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.026, whole genome shotgun sequence.
ACCESSION   DAPOLW010000026 DAPOLW010000000
VERSION     DAPOLW010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15937)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15937)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15937
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.026"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(42..2408)
                     /locus_tag="ROE18_000595"
     CDS             complement(42..2408)
                     /locus_tag="ROE18_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HDX3650795.1"
                     /translation="MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTC
                     QKFITEAKVHFECDIVGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTS
                     QNIYIDKELSSSSSHKSKAFTFIFTPELAPIKDYDGLDFNINFPHESLPYVGALDLNS
                     DPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFTSEFILYKLRAQN
                     KLYTQDPSMRDQQILEKMIDDAKNWTRTFTSDKNFSEVLHIMLRTYIALAQRADVEYT
                     MSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSL
                     AKNLLLNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDA
                     FAKMSKLDPSYEETLKDLALVLSHANRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEV
                     FFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLI
                     ESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMHFSAYDIGQKIENKKQMLACL
                     IRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDD
                     ENFKAYYLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTI
                     LTYAPKAIDYQNFKGINLFSPNLEFIYLDALTKINKNEESLAVLTDLLKLKLSDEDRA
                     RALYIQALTYERMQNIQAEKESLKQCLEIKSASNWQNLCKSKNQILNQ"
     gene            complement(2430..3818)
                     /locus_tag="ROE18_000596"
     CDS             complement(2430..3818)
                     /locus_tag="ROE18_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HDX3650796.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYASLVILCFSFLYLLMQKE
                     ENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIAMRGSDNAISSAIK
                     YFSIAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLIACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTVILNGYWYLALFVALSSVIMLYAYLKILIHVLFMKNDRVYNIKFSFIQNFILAFC
                     VCVSTFAILLML"
     gene            complement(3808..5295)
                     /locus_tag="ROE18_000597"
     CDS             complement(3808..5295)
                     /locus_tag="ROE18_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HDX3650797.1"
                     /translation="MLNYLIFFPLISAFVVLLLNRGGIKVFSVVVSFMILALNLDIFA
                     DFLQGVSFDYNLSFKILKFFSFHVGVDSIALVLMLLSSLMIFLSFLFLKLEQKALISC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLVALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYANSPVLVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLM
                     VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIEGFSLRFREIVALVCIVVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            complement(5297..7087)
                     /gene="nuoL"
                     /locus_tag="ROE18_000598"
     CDS             complement(5297..7087)
                     /gene="nuoL"
                     /locus_tag="ROE18_000598"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HDX3650798.1"
                     /translation="MQNLALISLFSPFVAFLFASCFALSEKKQFVGIICSLLVALSAF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSVVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNDTYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDHNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVARDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKFTAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHNEHPHEASKIALLAMSPLM
                     VLAIIAGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGVILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPRFYHQFIVSKYESLCAILKHCDLYIFDRIVEKIALYSQIIS
                     QKMIMPNSLNLMLRFLVATFVILLILVWMV"
     gene            complement(7089..7385)
                     /gene="nuoK"
                     /locus_tag="ROE18_000599"
     CDS             complement(7089..7385)
                     /gene="nuoK"
                     /locus_tag="ROE18_000599"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HDX3650799.1"
                     /translation="MIEKYFFVAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGVALCVLWYRRKGTLELKSLKEVEA"
     gene            complement(7382..7900)
                     /locus_tag="ROE18_000600"
     CDS             complement(7382..7900)
                     /locus_tag="ROE18_000600"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HDX3650800.1"
                     /translation="MIENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSTIL
                     LLAMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     VLTHKELTKEKQ"
     gene            complement(7897..8538)
                     /gene="nuoI"
                     /locus_tag="ROE18_000601"
     CDS             complement(7897..8538)
                     /gene="nuoI"
                     /locus_tag="ROE18_000601"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HDX3650801.1"
                     /translation="MKNYYLVDEKRKTPVSTWEKISQALRRSVKLELFVGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVENYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDANLWVKKTPNYYDVMIERALENQNTQEQGENK"
     gene            complement(8548..9546)
                     /gene="nuoH"
                     /locus_tag="ROE18_000602"
     CDS             complement(8548..9546)
                     /gene="nuoH"
                     /locus_tag="ROE18_000602"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HDX3650802.1"
                     /translation="MSDFAFFALETLIKCIIIIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFVSLAAIPMLP
                     EFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVSII
                     SYESVGALALIAIIMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYTSMIAGAILVTLLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALTVLL"
     gene            complement(9539..12001)
                     /locus_tag="ROE18_000603"
     CDS             complement(9539..12001)
                     /locus_tag="ROE18_000603"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HDX3650803.1"
                     /translation="MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKHWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPANGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFKELVELFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDITKSDFLVVAGMLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPMEDMGIAKYSKNFIPHIHKNGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKKIIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLVVGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDNNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKEFISPNFENLSLKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGANHE"
     gene            complement(11998..12690)
                     /locus_tag="ROE18_000604"
     CDS             complement(11998..12690)
                     /locus_tag="ROE18_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650804.1"
                     /translation="MIYDNALCFLDMPSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGQFCDLDEGYLSAESCFGEEEAGEVLAFLKEVKYLIID
                     KNIHSYKDSENIKYFLNFLSVKYGLKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSKQFLQIAKCKDQSEVEILAKDFSFKTKLCLDENLQGTIAFLNYENNG
                     FDFTPIRIKEAK"
     gene            complement(12687..12914)
                     /locus_tag="ROE18_000605"
     CDS             complement(12687..12914)
                     /locus_tag="ROE18_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HDX3650805.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCELLNSLKFNQVDWTIVIKKERV"
     gene            complement(12911..14137)
                     /gene="nuoD"
                     /locus_tag="ROE18_000606"
     CDS             complement(12911..14137)
                     /gene="nuoD"
                     /locus_tag="ROE18_000606"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HDX3650806.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCAMLYKDTSPEILATHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            complement(14139..14933)
                     /locus_tag="ROE18_000607"
     CDS             complement(14139..14933)
                     /locus_tag="ROE18_000607"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HDX3650807.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHTVKSDVNESIFKDDFEVL
                     KTQVEILNSFVELDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFIADKNGFEVF
                     YQLLNLEKKLRVRIKTFVGVKERLQSVAHVFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKTYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFADDKDTLNF
                     ARLYHEVPKGGQKKEISFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            complement(14930..15433)
                     /locus_tag="ROE18_000608"
     CDS             complement(14930..15433)
                     /locus_tag="ROE18_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HDX3650808.1"
                     /translation="MAEHQVNYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLV"
     gene            complement(15415..15804)
                     /locus_tag="ROE18_000609"
     CDS             complement(15415..15804)
                     /locus_tag="ROE18_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HDX3650809.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFVIALIFILLDIEVVFLFPWALIFKDLGWFGLLE
                     VFVFIVLLGVGFLYAYKKGAFAWQSIK"
BASE COUNT         5977 a         3014 c         1884 g         5062 t
ORIGIN      
        1 cttagataac tagccaaaaa gctagttatc tctaaattta cttattgatt taaaatttga
       61 tttttactct tacataaatt ctgccaattt gaagcacttt tgatttcaag acattgtttt
      121 aaactttctt tttcagcttg tatattttgc attctttcat aagttaaggc ttggatatat
      181 aaagctcttg ctctatcttc atctgaaagt tttaatttaa gtaaatctgt taaaacagct
      241 aaactttctt catttttatt gattttagtc aaagcatcaa gatatataaa ttctaaatta
      301 ggactaaaaa gatttatacc tttaaaattt tgatagtcaa tggccttagg tgcgtaagtt
      361 aaaatagttg tttgcatatt gtgatcatta gcataagaaa gtaaagcatc ataagcttcc
      421 accatactaa aattcattgg aaaactttct aaaatttgca aaattttaat ggcttgattg
      481 tagtcattta agcgcaataa agacaaaaat tgcaaataat aagccttaaa attctcatca
      541 tcgcttttta aaattctaga attagctata tctttagaaa ttttaatcac ctgaggatat
      601 tgtttattat caaaaagaat agatgctttt tgaagaccat aaaatataga atcttcatta
      661 taatttttat ctatataatc aagtgcttgt tcaacattag aagttctgat aagacaagct
      721 aacatttgtt ttttattctc aattttctga cctatatcat aagcactaaa atgcataaaa
      781 atatttgcag cattgataca attatcagct tttatcgcat tttttaaatc attaatggct
      841 gctttctcta aaaattgagt agcatttgga atttttttac tttctataag atctttataa
      901 gctaaaatag cactaaaatt tccctcttta taataaagtg caacatcttc atctaaagct
      961 ttatttgcaa tattctcatc tttatttgca tattgcttca ttaaatctgt ataacgctga
     1021 tgcaaaaagc ttgcattatt atcacctaaa gcaaagaata cctcatcact tgctttttta
     1081 atttcatcta aatacttacc atctaaataa tcatccatat acaaatcaag gtatttttta
     1141 gcatcactag atctgttagc atgtgataaa accaaggcta aatcttttaa agtttcttca
     1201 taacttggat caagtttgga cattttagca aaggcatctt cataaatact tgcacttata
     1261 tcaaattgtc ctttttgatt aaataattta gcaagttcta aagatcttgg aatatctttt
     1321 ccaaaatatt caggattggc ttttaaaatg gtattaatat attctatagc tttatttact
     1381 tgctcattta aaagcaaatt ctttgccaaa ctcatagctg ctcttgcagc taaatctaaa
     1441 ttttttgtat taaaataagt attttcataa atatttacag ctttttcttt ttcatttaaa
     1501 ttataaatat agtctgcata atcaagtttt gataactgag taaaataatt attaggttgt
     1561 tcattatcca aaatcgacat tgtatactct acatcagcac gctgagctaa agcgatataa
     1621 gttcttaaca ttatatgtaa aacttctgaa aaatttttat cacttgtaaa agtacgcgtc
     1681 caatttttag catcatcaat catcttttct aaaatttgtt gatcacgcat acttggatct
     1741 tgagtgtaaa gtttattttg agctcttaat ttataaagta taaattcact agtaaaaata
     1801 ctgccacgat atctattgat agcattttgt gcatcaatca ccacttgatt gtaattagcc
     1861 ttatcgtatt cttttttgat gcgtaaataa gtattgatat ctgcactttg aggaataaca
     1921 acaggatcag aatttaaatc caaagctcca acataaggca aactctcatg tggaaaattg
     1981 atattaaaat cgagtccatc atagtcttta ataggtgcta gttctggtgt aaaaataaaa
     2041 gtaaaagcct tacttttatg cgaacttgat gaactgagtt ctttatctat ataaatattt
     2101 tgagaagtgt caaacattct tgcttgtatt tttggcaaaa tgatcatttt aattttttga
     2161 gcttcttgta taaattttaa atcaaaagca gaaaaactct gatcttttaa tttattatca
     2221 accataccta caatatcaca ttcaaaatga acttttgctt cggtaataaa tttttgacat
     2281 gtaaattcta aatcattact cgcatgtaaa actgcaaaag cttgattatt ttcgcgaccc
     2341 gtgtttaaaa caagctcaaa agcaaaagca tttaaaaaac ttaataaaat taaaaataat
     2401 attctcataa aataattata gcaaaactct tataacatta acaatatagc aaaagtgctt
     2461 acacaaacac aaaaagctaa aataaaattt tgtataaaac taaacttaat attataaacc
     2521 ctatcatttt tcataaataa aacatgaatt aaaatcttta aatacgcata aagcataata
     2581 acagaagata aagccacaaa aagcgccaaa taccaatatc catttaaaat tactgtattt
     2641 aaaatcataa atttacccca aaacactcca aaaggcggga tacctgctaa agaaagcaca
     2701 ctaatgctta aacaaaaagc aattaaaggt tttttaacca aaagcccatt taaactctca
     2761 taagaattat tctcataatt acttaaaatc ataaatacag cataatttgc aaaagcaaat
     2821 aaagtccaat atccaaaaat agcaagcaaa attccatcaa aattttgttc ttttaataaa
     2881 ggaatgcaag ctatcaaaac caaagaagaa tgcactacag aactataagc aaacattttt
     2941 ttgatattgt tttgacttag agccgcaaaa gcgcctataa gcatagaaaa aatcgctaga
     3001 actattatga tatattcaaa acctgtatta tttaaaaaat caaacaaacg aataaccaca
     3061 accaacatgg caacttttgg cacaactgaa ataaaagcaa ccaaatttgt atgtgctgca
     3121 taatacacat ctttaagcca aaaatgaaaa ggtgccaaag aaagcttgat tgcacaaaga
     3181 acaaaaatca tcactccagc acccaaaagc atgggatctt tttgaaactc attttttaac
     3241 gctaaattag cagataaatc taaagttcct gtttttaaat aaataaaagc tacagccata
     3301 acaaaaaacc cagctcctac agccgctata ctaaagtatt ttatcgcact tgaaatagca
     3361 ttatcacttc cacgcattgc tattaaagta taaagcgcta aagaagaact ttcaagtcct
     3421 ataaaaataa gtactaaatt tgagcttgaa accatcaaaa gcaaagatgc aatcataaat
     3481 aaaaataaag cataaaattc accttgattt tcttcttttt gcattaaaag atataaaaat
     3541 gaaaaacaca aaatcaccaa agaagcataa aatgaaacaa tatcattatt taaagtagcc
     3601 aaaaaagctt ttgcttctaa accttgagca tttgcattat ttaaaatcaa aaaagcactt
     3661 acaatcaaag acaaagaact tatgccgata taaaacgatc gatgaaattt ccaaaaacca
     3721 gagcaaagca aaagaactat tgcagttgta attaaaaata aaaatggata agataagctt
     3781 atatttaaaa gttctaaatt taaaaaatta tttaacattt gcctctccta ttttagataa
     3841 aaaatctaaa gtattttgct caacagctct aatattcatt gtttttataa gattatccac
     3901 atctttttgt atcggcttta aaagtatatt tggcataagc cctagtccaa aaatcattac
     3961 tacaatgcac acaagcgcta ctatttctct aaaacgtaaa gaaaaaccct ctataaagct
     4021 ttgtttttgc atgaaaaata tttttctaaa tactgcgaac atataaatcg ctcctaaaat
     4081 aatcaccaaa cctgccaaca aagcgtaaaa taaattaatc tttgctatac ctaaaagaat
     4141 taaaaactct cccacaaaag aaacagttaa aggcaaagaa acactcgcaa gtaaaatgag
     4201 cataaagaaa attgaaaata aaggtgcttt tttggctaaa gaatggtaaa aagaaatatc
     4261 ataagtatga tatctttggt ataaaagttc aaccattaaa aataaagctc ccgttacaat
     4321 accatgtgca aacatataaa aaaccgcacc actaataccc aaagcattta aagaaaaaat
     4381 tcccaaaatc atcacaccaa gatgtgaaat agaactataa gcaatcaatt ctttaatatt
     4441 ttctgctcta taagcaatta aagcattata aacgatactt actatacata aagctacaat
     4501 taaaggcata aaatacacac tcgcatctgg aaaaagtggt aaacaaaaaa gtaaaaatcc
     4561 aaaaggagcc attttaaaaa ctacaagcat tacagaaaca agtacaggcg aatttgcata
     4621 aaccttaggt gcccaagtat gaagtggaaa taaaggagct ttgatagcaa aagcgataaa
     4681 aaatgctcca aaaagtaaaa gttgctctgt aaaatttact gctgaggcat tatttttcca
     4741 aatttccaag tcaaaagtga agatatttaa aagctgataa tttaaataag cttgataaat
     4801 caatgctaca agcattaaaa ttgaacccgc aaaagcatag ataaaaaatt tcacccctgc
     4861 tctaaaatct ttaccataaa cccccataat ataaagcaaa ggcaaaagag aaaattccca
     4921 aaaaacataa aacaacaaac catcttttgc gctaaaaagt cccataatag caaattctaa
     4981 aaagaatata caagatataa gcgctttttg ttctagtttc aaaaataaaa agcttaaaaa
     5041 tatcatcaaa gaacttaaaa gcatcaatac aagtgcaata ctgtctactc ctacatgaaa
     5101 gctaaaaaat ttcaaaattt taaaagagag attataatca aagcttaccc cttgtaaaaa
     5161 atccgcaaaa atatccaaat ttaaagccaa aatcataaaa cttacaacaa cgctaaaaac
     5221 cttaatgcct ccacgattta aaagcaaaac cacaaaagca gaaattaaag gaaaaaatat
     5281 caaataattt agcattttac accatccata ccaaaatcaa caaaatcaca aaagttgcca
     5341 ccaaaaatct aagcattaag tttaaactgt ttggcataat cattttttgt gaaataattt
     5401 gagaatacaa agcaattttt tcaactattc tatcaaaaat ataaagatca caatgtttta
     5461 aaatcgcaca taaactttca tattttgaaa cgataaattg atgataaaac ctaggaataa
     5521 aataatcatt acttaaaagt ttgtgaattt tattttcttc aatactttcc ttaaaccaag
     5581 aatttttata agcaaaaata gccaaaatta cacccaaaat agctgctaca ctcgcacaaa
     5641 tcattacaat ttgattttgt gcatcaataa aaactaattt tgtgcttaaa tattcaaaaa
     5701 aactatgttc aaaaaatcct gcaataatag ctaaaaccat caaaggactc atagccaaaa
     5761 gtgcgatttt acttgcttca tgtggatgtt cattgtgtct tgcaggggta aaaaatacca
     5821 acattaaaag tctaaagcta taaaatgctg ttaaaaaagc tgcgattaaa agcactaaaa
     5881 aaataccatg gtgaaaagaa atgaaagaat atcctaaaat caaatcttta gagaaaaatc
     5941 ctgcaaaagg ataaattcct gctaaagcta aagatcctat acacatcaaa atagctgtaa
     6001 attttaaagg tttaaaaagt ccacccattt ttttaatgtc taatttatca ttcatagcat
     6061 gcattacatt tccagcacct aagaaaagta aagatttaaa aaaagcatgt gtagctaagt
     6121 gaaataaagc tataccataa gccccaagtc ctgcagccac aaacatatat ccaagttgcg
     6181 ataaggtaga ataagcaata atgcgtttta aatccctagc caccaaagcc atagaggctg
     6241 caaaaatcgc tacaaaagct ccaagtaagg caataatata agaaacttca ggaactaaat
     6301 cataaagcgt acttgcacga attaccaaat aaacccccgc tgttaccatg gttgctgcat
     6361 ggattaatgc agaaacagga gttggccctg ccatagcatc agcaagccaa gtgtgaaaag
     6421 gaaattgtgc agattttccc atagccccta taaataaaca agttgcgatt aagatcaaag
     6481 cgttgtgatc taggctttgt gccatggaaa aaacttcatc atattttaaa gttcctgctt
     6541 gcaaataaag ccaaaaaatt cctaaaagca tacccaaatc cgcaatacga ttcataataa
     6601 aagcttcatt agccgcaaaa gaataagtat catttttata ccaaaaacct atgagcaacc
     6661 aagagcaaag cccaacgcct tcccaaccta cgaaaagtcc taagaaatta tcactcataa
     6721 ctaaaaaaag catagaaaag acaaaaagcc ccaaataagc aaaaaattta ttaaaacctt
     6781 catcatgagc catataaaaa atactataaa aatgcacaca agtagctaca atacctacaa
     6841 cactcatcat agtaagcgaa atagcatcta tatcaaagcc aaaatttact ccagcaaacc
     6901 attcaaacaa actcacatta aaagcttcat tgcaaaaaag caaatacaaa gaacaaaaag
     6961 cactcaaagc tactaaaagt gaacaaatta tccctacaaa ttgttttttc tcactcaaag
     7021 caaaacaact tgcaaacaaa aaagctacaa aaggactaaa aagagaaatc aaagctaaat
     7081 tttgcatact aagcctccac ttcttttaag ctttttaatt ccaaagtgcc ttttcttcta
     7141 taccaaagca cacacaaagc tacaccaaca gctacttcac aagctgctac acccatgata
     7201 aaaagcgcaa aaacctgtcc atttaaatca ttgtgcattt tagaagctgc tactaaggct
     7261 aaattagcac tatttaataa aatttcactt gagataaaaa gcatgatgag attttgtctt
     7321 tttaaaatcc ctacaagtcc tatgacaaac attaaaatag cgacgaaaaa atacttttct
     7381 atcattgttt ttcctttgtt agctctttat gagtaagcac tatagcacag actaaagcaa
     7441 tcaaaagcaa aatagctata aactcaaaag ctaaaagata ttttgaaaaa atcgctaaag
     7501 ccagttgttt attaaaatca aacaaagcag gatcatttaa aggcaaatcc gtgctgatat
     7561 tttggtattt aaaacctata agcatggcca aaagtaaaat cgtacttaaa accaccaaag
     7621 taaaaaaact ttttttagct ttaagttgtt ctttaaattc tttagaagca tcaaaaaaca
     7681 tcatcgcaaa actataaagt ccaagtacag ctccactata aacaataatt tgtatcacgc
     7741 ctaaaaactc tgcatcaagt aaaaaataaa atcccgataa aaataccatt ccacccgcta
     7801 aagcagaaag agaataaagc atatttttac ttaaaaccgc aatgccaaaa aagcctaaaa
     7861 ccactacact aaaaaataca aaagccaaat tttctatcat ttattttctc cttgctcttg
     7921 tgtattttga ttttctaagg ctctttcaat catcacatca taataatttg gcgttttttt
     7981 aacccacaaa tttgcatcct ttctaagact tcctgctcct tcaaattcaa cttgattttt
     8041 aagcttatca ataggagtta aaaaatcttg cttatagcca aaataagacc tttgctcggc
     8101 tgcattttca tactctgtgc catgcactat agcaagttca gggcaaacct cagcgcaaaa
     8161 accacaataa atacaacgcc ctaaattaat actataattt tctacttttt tacgcccatt
     8221 ttcatctaaa gaagtttcca ttctgataca attactaatg caaatttttt cgcaaagccc
     8281 acaacctata catctttcat tttcgctttc tataaaacgc atcaaacgat gaacagcacg
     8341 gtaacgattg tcaagcttta ccttttcaaa aggatattta atcgtagcgc tattatttct
     8401 cttaagtaat tctctcatca tcacaaaaag ccctacaaaa agctctagtt taacgcttct
     8461 acgcaaagct tgtgaaattt tctcccaagt gctaacagga gtttttcttt tctcatctac
     8521 taaataataa tttttcatat caaactccta taaaagaact gtcaaagcag tgattaaaag
     8581 gtttaaaaca gctaaaggga ttaagatcaa atagcacatt ttcatcactt gatctggacg
     8641 caattgcgga aaagcagctc ttgcccaaaa ataccaaaag aaaataaaac ttgattttac
     8701 tatcatcata atccaaccag gaataatcca aaagctatta aaacccccta aaaacaaaag
     8761 agtgaccaaa atagctccag ctatcataga agtatattca cctatgaaaa acatacccca
     8821 tcttaaaccc gaatactccg ttccataacc cgctacaatt tcagcatcat tttccgtcaa
     8881 acaaagcgga gttctattag tctctataaa taaagcaatt ataaaaagca caaaagccaa
     8941 aggttgttta aaaataagcc aagaaaaaaa tccatcgctt tgataattgt taatatccac
     9001 caaagaaaaa gaacctacaa gcattataat agcaatcaaa gctaaagctc ctacgctttc
     9061 ataggaaata atcgatacaa gccctcttgc agcccctaaa atcgaccatt tattattact
     9121 tgcaagtcca cccaaaaaca ccgcataaaa gcaaagtcct gaagtgccga tgacaaaaag
     9181 caaagctaca ttgatatctg ccactatagg ctgaatcacc cttccaaata aagtaaattc
     9241 aggtagcata ggaatagctg ctaaagaaac aaaagcacaa atagcagaaa tcaaaggtgc
     9301 tatagcaaaa ataaattttt gcgaatttga agggattata tcttctttag taaaaagttt
     9361 tatcatatca gctacaagtt gaataagccc aaaaggccct accatatcag gccctatgcg
     9421 tctttgaaaa taagctaaaa cctttctttc agcataagtt gcaagacctg ctaaactcgc
     9481 aaatattgca atgataataa tacatttaat caaagtctct aaagcaaaaa aagcaaaatc
     9541 actcatggtt tgctcctaat ttttctaaat tcgccacaac aaatctttca tcaaaaaagc
     9601 ttagcgtatc aagtttttca tcaaaatacg gcaagaaagc tccatttttt atatccttat
     9661 ccacacgcac actaaggctt aattctttat cttttatttt aagttttaca agatctttat
     9721 cttttaaatt tttctcttta gctaaatttt cacttacacc taaaaaaatc acctcattaa
     9781 tcgcactagc acgatttgaa aatctaccaa attgatagct aggattagca ctataaagca
     9841 aaatttcatc ttcttttagg cttaaatttt caaaatttgg agagatgaat tcttttttag
     9901 caacttgttt gaaacattct aaattaagct catatcccct tttacaatcg cctgcattgg
     9961 tataaaaatt gtctaaatga tcaaaatcaa tcggagaaaa acctttattt atagggagtc
    10021 tcttagtata atttatagta tattcctcat caaaacctaa agcattagcc aaatcattta
    10081 aaaaatatcc cttaaattct aaagcagcat tagttggtac cactctttta tcataattta
    10141 aaaaagttcc ttcttgctga tttaaactcg cactagctaa atttgcatgc tcttcataag
    10201 aaaaactaaa atcacctttt tcattgtagc ctaaagtctt gccttcttgt gtattgttat
    10261 ccaaatcaca aatcatagcc acacctaagg tattagtatg cgtaggattt aaaaagactt
    10321 taaaaggagt agtattttgg atcaaagcaa gtaatttagc aagttttttc gcatttttat
    10381 gaaaataaaa atcactccct acaacaagag taaaatttgc ttttttaagc aataaatctt
    10441 ctaatttatc ttcatctatg cctaaatttt tagcaaaaac agagcgttgt acttctatga
    10501 ttttttttac ttttttaggt acgacttttt ttacttcttt ttgaatttca ttgccttctt
    10561 catctttttc tatgacttgt tctacaactt cttcgttgat actttcttct atttctttat
    10621 tttcactaac aaaaaactct gctaaatgag ttttaatacc ttcatcttgg ctaaattttt
    10681 gaagtaaaaa atataaaatt tgctcttcat cgccattttt atgaatgtgc gggataaaat
    10741 ttttagaata ttttgctata cccatatctt ccataggatg aaaataaagc cctgagcctt
    10801 tattcatcac taaagcatta ttgattttat agctaagcgt tggagcatca tatcttaaaa
    10861 gcattccagc tacaaccaaa aaatcacttt ttgttatatc ttgagtatta gcgctataaa
    10921 actcaccaga attagcgata aattcttgta aaaattcttt aaatttcaaa gcttcttcat
    10981 tgatcaaaga aagattaaat ttctttttta aattttgtaa aatcaaagct tcttcattgg
    11041 taataaaact attaaattta atgtttttaa tttcattttt ctcaaaaagc tccacaagtt
    11101 ctttaaaggc tttttcatct ttatccgcct cattttgcgt atcaaaagca aaccttgcag
    11161 ccttatttaa actcgcaaag gcaaaatcat tactcacacg ataaattttt tctttttgat
    11221 tgctaatgcc gctttgctta atatcataat acatcaactc acaatcgctt gaatgcggat
    11281 ttgaagcagg gattctttta agttcccaaa tatttgaagt gtattgaaat ttcgaaccta
    11341 tcaaagctcc tgttggacac acgcttgtac attctccaca aaatgaacaa tcaagcgtat
    11401 caccatttgc agggcctatc aaactttttt gaaatttagt ccaaatcgca taagcatctt
    11461 ttcccatgct ctctttaaag ctattatcca cactatctcc gccacgagga acagtcttta
    11521 aagcactttc gccgatttta tccttacaaa ctgtaataca acgctcacac actatgcaaa
    11581 gtgcgggatc gtaattaatc attccccaat gtttatgtgg tttatgcgtg tctttaatcc
    11641 aatgtttttg aacatttaca cgacttttat gagtaaaatt ttgcaattca cactcgcctg
    11701 atttatcgca aactccacat tctaaaggat gattgataca ataagcttgc atgatctcat
    11761 ttctttcatc ccaaagattt tgtaaatcac tttctacaac cataccctct tttgctttag
    11821 tattgcaaga atataccttt ttaccatcag cttcaaccat acacatacga caagccaaag
    11881 taggactaca gcccgaaaga tagcaaatcg ctgggataaa aatatcattt cttcttgcta
    11941 tatttaagat atattcgcct tcttcaaagg cgcaatctat accattaatc ttaactgtca
    12001 ttttgcttcc tttatgcgaa ttggagtaaa atcaaaacca ttattttcat aatttaaaaa
    12061 agctatggtg ccttgtaaat tttcatctaa acaaagctta gttttaaaac taaaatcttt
    12121 agctaaaatt tcaacttcac tttgatcttt gcattttgca atttgtaaaa attgctttga
    12181 acaatgtaaa tttttatctt gcaaatttgc tctaaaaagc actaacccgt cataattatc
    12241 gagttctttt agggtgttta attttgcctt tttaaaatcg cattcttctt catcgctatc
    12301 taaaatcttt aatccatatt ttacacttaa gaaattcaaa aaatatttga tattttcact
    12361 atctttataa gaatggatat ttttatctat aattaaatac ttaacctctt ttaaaaaagc
    12421 aagcacttcg cctgcttctt cctctccaaa acaagattca gcacttaaat atccctcatc
    12481 taaatcgcaa aattgtcctt catcgcttaa tttacaaagc aaggccaaaa caaaactcaa
    12541 acttgcaatt tcgcatttgt aaaatttagc ttttaagttt ttatcttcca aacaagaaat
    12601 attaatgcta tttacaccta ttttttcaca taaatttttg tttttaaggc ttggcatatc
    12661 taaaaaacaa agagcattat cataaatcat accctctcct tttttataac aatagtccaa
    12721 tcgacttgat taaatttcaa agaatttaaa agctcacagc cttgttcttt tacaaaagaa
    12781 aaactttttt caacaggaga aaaatcgccg atttcaaaaa gcaccactaa aacctcacct
    12841 tgttttgctt cttttatgat ttgtgctaaa tcttcaaaaa gctctttgct ttttcttaaa
    12901 tctacccttc tcatcgatct atctcaccta aaactatatt tacattaccc ataatggcta
    12961 caacatcagc taaataagta cctacaagca tttcttcaaa aaacgcacaa tgccaataac
    13021 taggcgttct agcctttaaa cgataaggtc ttcctgtacc atcactatgg ataaaaaagc
    13081 caagctcacc ttttggactt tcagtaggca cataaacttc gcctttaggg ggttttaaac
    13141 cttgagtgat taaaacaaaa tgctgcatta aagaataatt ctgcgttaaa atttgttcct
    13201 ttgaagcact tacatactca ggatgcgtag ctaaaatttc aggcgaagta tctttataaa
    13261 gcatggcaca ttgtctaagg attttcaaac tttcacgaaa ttcttgcata taaactttat
    13321 atcttgcata agaatcccct tgcgtagcat aaggcacacc aaattcaact tcattataaa
    13381 gcaaataagg ctcttctttg cgtatatcgt attttatgcc acttcctctt aacatcacac
    13441 ccgtacaacc ccaatttaag gcttgttctt tagtaaccac acctacattt tcagttctta
    13501 aacgccaaat tctattatca tctaaaagat cttcataatc ttttaaatca tttggaaatt
    13561 tatcgcaaaa tgcaagcatt tcttctaaat aattctcagg taaatcaagc ataaccccgc
    13621 ctattctcat agaagaatgc gtaagccttg caccgcaata cttttctatc aaatccaaaa
    13681 catactctcg ttctctaaaa cagtataaaa atacactcat cgcaccaata tcaagcgcat
    13741 gagtagcaag ccaaagcaaa tgcgatgtga tacggtttaa ttctaaaagt atcatgcgta
    13801 tcactgcggc acggcgtgga atctctaaac cacaaagctt ttcaaccgct gcacaataag
    13861 cataattatt cgctgaagca gcgatatagt ccattctatc agtagtagga ataaattctt
    13921 gataaatcat attttcagcc attttttcca taccacgatg catataacct atacaaggac
    13981 gcgcttttac aacttgctct ccatcgagtt ctaaaataag acgcaaattt ccatgcgctg
    14041 aaggatgttg agggcctaag ttgataatca tttttgagtc ttcttgctca aaagctatat
    14101 tttcataata aggttttaac ttgctaggaa tttgcatttt aacgcctttt ctctaaaatt
    14161 tttgcttcat cacgttttac tttttttaca aaagccacac cttcatcttc ttgatattct
    14221 tgtttaaagg aaatttcctt cttttgacca ccttttggca cttcatggta aagtcttgca
    14281 aaatttagcg tatctttatc atcagcaaaa ccagaatctc tttgttcttc gcccactact
    14341 tcgcggtatt ctttgccaaa aattttatca atctcatacc atcttgcaaa ctcatcgccc
    14401 tttaaaggat aagtttttaa aagcggatgt ccaaaccaat catcaggcat taaaatgcgt
    14461 tttaaattgg gatgatttat gatgaaaatt ccaaacatat cataaatttc tctctcactc
    14521 caatttgccc ctttaaaaac atgagccacg ctttgcaaac gctcttttac gcctacaaaa
    14581 gtttttattc tcactcttaa ttttttttct aaatttaaaa gctgataaaa cacttcaaaa
    14641 ccatttttat ctgctataaa atcaatagca cttgcttctg taaaacttaa ataacctaaa
    14701 gttttaagca tttgcaaggt tttaacattg tcttcttttt taatttctat tacccaaaaa
    14761 tcaagctcta caaaggaatt taaaatttct acttgagttt ttaaaacttc aaaatcatct
    14821 ttaaaaatac tttcattaac atcagatttt acagtatgtg gcgcgtgata aaatctatct
    14881 ttgtaataat tttgagtttg agcatttttt ttatcgctat actttctcat tataccaacc
    14941 ttttaggtgc gattttacga cttgcttttt ctttgcggat ctttttttgc aaaatcatca
    15001 aagcaaactg aaaactttcg gggcgtggag cacagcctgg cacataaata tctacaggta
    15061 taattctatc cactccttga accgtagaat aagtattaaa cataccccct gtattggcac
    15121 aacttcccat agaaatcacc catttaggat caggcatttg atcgtaaagt cttcttgtaa
    15181 attcagcatg ctttttacat aaagttcctg cgataatcat cacttcacta tggcgtggtg
    15241 aagctctaaa aatcgttcca aatctatcaa aatcatatct tgaaccccca gccgccatca
    15301 tctcaatcgc acaacaggca agtccataag ataaagccca taaagaatta ctcctgcccc
    15361 attgaactag tttatccaca ctagttaaaa ctacgggcaa accacttgca taatttactt
    15421 gatgctctgc catgcaaacg ctcctttttt ataagcatat aaaaatccaa ctcctaaaag
    15481 tacaataaaa acaaaaactt ctaaaagccc aaaccaacct aaatctttaa aaattaaagc
    15541 ccaaggaaat aaaaacacaa cttctatatc caaaagtatg aagattaagg cgatgacgaa
    15601 aaattgagag ttaatcttgt tagcttgttt aacaggaata ggaccacatt cataaattcc
    15661 aagtcctaat tttttgcgat tttttgcggc aaaattatta ccgatttttg aagctaaaaa
    15721 aaccagtcca aaaaaaataa cactagcaag tactagcatt aaaaaaatac caaaataagg
    15781 atgcgaagca tctatatgag acatttattc tcctttttta aagcacttta atcactccac
    15841 aacaaaaatt aaatttacac ttttctttat tttactctaa actttctata ttgaaactta
    15901 tattaaaaaa tattttttaa agttttaatt ttttatg
//
LOCUS       DAPOLW010000027        15904 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.027, whole genome shotgun sequence.
ACCESSION   DAPOLW010000027 DAPOLW010000000
VERSION     DAPOLW010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15904)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15904)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15904
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.027"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..152
                     /locus_tag="ROE18_000610"
     CDS             <1..152
                     /locus_tag="ROE18_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650810.1"
                     /translation="KNYDKLLEAYKLLEQNKIEEANVLLSQIKENSSLNQIAKNLKHY
                     QGITQ"
     gene            149..1147
                     /locus_tag="ROE18_000611"
     CDS             149..1147
                     /locus_tag="ROE18_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650811.1"
                     /translation="MKKIFLTLFCLIFLCACGTKRQYFEPKQTDGDLSHNSNLKSKIV
                     DWNLVSAKLSNNTTILKNNISIDKFKLPKNYMLLAYQDGEYFTADNNGNLKIFDNSYN
                     EIYNFQFDASVVGVASNGDDLALVLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANP
                     IFLDNIIVYPTLDGKILILSRNNLQIIKDVVISAENFFNNVIHLSVIGDKLIAATAKK
                     IIVVSPARTLYLDADIKDVALSDDGIFILEKDGTIIKTDYNLRKIAGKKFEFAIFVKS
                     NIYNNYLYIFEKTGYLIKMNLNLDNAQVFKLSEAVDKISFMGNGKFYYGDKILDLL"
     gene            1144..1434
                     /locus_tag="ROE18_000612"
     CDS             1144..1434
                     /locus_tag="ROE18_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tram-like protein"
                     /protein_id="HDX3650812.1"
                     /translation="MIKILEQTIKALKLNLKPYDLSMLTRKKSYICAKDQNNILFMYT
                     GKTKFLMKDALFLENLAQQININNKYFFSMASLCSKAKNHLEMKGFNIYVAL"
     gene            1421..2050
                     /locus_tag="ROE18_000613"
     CDS             1421..2050
                     /locus_tag="ROE18_000613"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HDX3650813.1"
                     /translation="MLLCDIGNSNANFLDDNKYFTLNIDQFLEFKNEQKIFYINVNEH
                     LKEHLKNQKNFINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDIISNS
                     IHLGGFILPGIANYKKIYSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGIYLLI
                     KDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNLLY"
     gene            2169..3515
                     /locus_tag="ROE18_000614"
     CDS             2169..3515
                     /locus_tag="ROE18_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HDX3650814.1"
                     /translation="MSQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKMAL
                     AVGDIECDYMKKRYEEFKELYPYIKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVAFNQEIIHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFVDKSLFVKDAKKIVPSLKASDIYYAKGFGGVRPQVIDKTKGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLVCNYLGMEFNEDKFSSELL"
     gene            3564..5006
                     /gene="pyk"
                     /locus_tag="ROE18_000615"
     CDS             3564..5006
                     /gene="pyk"
                     /locus_tag="ROE18_000615"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDX3650815.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRRVAKELHTRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIRAKVVNIDNQKIETIIENDGFLNSNKG
                     INFPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNIQKEIIQKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAVGIDPANAVDIMCQTI
                     IETEKRYPYNKFNDFNDLDNTDKIMRSSAHLATDLNADAIFSLTSSGKSAIKIARYRP
                     NIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSVRSSVEKGFMDEDKCY
                     LLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
     gene            5104..5739
                     /locus_tag="ROE18_000616"
     CDS             5104..5739
                     /locus_tag="ROE18_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650816.1"
                     /translation="MQVNTFSNIASMARTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIGSSNAQTGLDSLLNGANLDTAKSILT
                     NIDFASLGYSSKNPLDMNTDELQQLVSEDGFFGVENTANRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQNTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(5770..8232)
                     /gene="pflB"
                     /locus_tag="ROE18_000617"
     CDS             complement(5770..8232)
                     /gene="pflB"
                     /locus_tag="ROE18_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HDX3650817.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSESGFKFTRESAPEDVSTFEEVESQEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVIMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDV
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLARLQNSYDNDKDRYKILDTYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDST
                     DAGIYLNISKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDTTKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPNIAREFYVN
                     LMHIAGLLNLERQKFKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAVGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(8242..9477)
                     /gene="serS"
                     /locus_tag="ROE18_000618"
     CDS             complement(8242..9477)
                     /gene="serS"
                     /locus_tag="ROE18_000618"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HDX3650818.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKIA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSAKVNALENELEEIAHAIPN
                     IPDECVPVGEDENENVELKKVLNPPSFDFTPKEHFELGESLNWLDFMRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDVLKKYF"
     gene            complement(9488..10447)
                     /gene="trpS"
                     /locus_tag="ROE18_000619"
     CDS             complement(9488..10447)
                     /gene="trpS"
                     /locus_tag="ROE18_000619"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HDX3650819.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKV
                     NNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            complement(10444..10941)
                     /locus_tag="ROE18_000620"
     CDS             complement(10444..10941)
                     /locus_tag="ROE18_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HDX3650820.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGGFVNVSNLEKAGFCIYLKAD
                     FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEI
                     KKVIK"
     gene            complement(10928..12310)
                     /gene="der"
                     /locus_tag="ROE18_000621"
     CDS             complement(10928..12310)
                     /gene="der"
                     /locus_tag="ROE18_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HDX3650821.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVINKVDNKKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEYYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRAHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            12412..13344
                     /locus_tag="ROE18_000622"
     CDS             12412..13344
                     /locus_tag="ROE18_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDX3650822.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGIFFIVYLLKRSKAHKEGGYFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFVVFKENIGIKGWIGILIAFGGVLLIAQPWAHNLNHSGFDLKNSVIGI
                     TSGFLAALALTSVRELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLD
                     FILAPFVMPSLTAWLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIV
                     GIILGDNLPSTMVFLGIIGIIFGGLILVKNKGKK"
     gene            13341..14156
                     /gene="kdsA"
                     /locus_tag="ROE18_000623"
     CDS             13341..14156
                     /gene="kdsA"
                     /locus_tag="ROE18_000623"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HDX3650823.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKINIKKGQFLNPSDIKYSVKKVLQTRGIEDEGYEAAQRNGVF
                     VAERGASFGYGNLVVDMRSLVIMREFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPCEALCDGPNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            14153..14617
                     /locus_tag="ROE18_000624"
     CDS             14153..14617
                     /locus_tag="ROE18_000624"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HDX3650824.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            14617..15015
                     /gene="nusB"
                     /locus_tag="ROE18_000625"
     CDS             14617..15015
                     /gene="nusB"
                     /locus_tag="ROE18_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HDX3650825.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNF
                     TLNLYNGILDNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVIN
                     EAIELAKELANDNSPKFINGVLDALIKAKK"
     gene            15012..15851
                     /gene="pyrF"
                     /locus_tag="ROE18_000626"
     CDS             15012..15851
                     /gene="pyrF"
                     /locus_tag="ROE18_000626"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HDX3650826.1"
                     /translation="MKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFI
                     EELKKVDDFKIFLDLKFHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLS
                     KFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKK
                     IKEHTSSNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAV
                     CEKILNKIHRKNISENDIEQNYEVIQQKEWDMCNHFEEWIKTQPDKEHALKEFYAKCG
                     IKY"
BASE COUNT         5639 a         2541 c         2355 g         5369 t
ORIGIN      
        1 taaaaaatta tgataaatta ttagaagctt acaaactttt agagcaaaat aaaatcgaag
       61 aagctaatgt tttactttct cagataaaag aaaattcaag tttaaatcaa atagctaaaa
      121 acctcaaaca ttatcaaggc attacacaat gaaaaaaata tttttaacac tattttgttt
      181 aatatttcta tgtgcttgtg gcaccaaaag acaatatttt gaaccaaaac aaaccgatgg
      241 agatttaagt cataatagca atttaaaaag taaaatcgtt gattggaatc tagtttctgc
      301 aaaacttagc aataatacaa ctatcttaaa aaataatatc tccatagaca agtttaaact
      361 tcctaaaaat tatatgcttc tagcttatca agatggggaa tattttactg cagataataa
      421 tggaaattta aaaatttttg acaattctta taatgaaatt tataattttc aatttgacgc
      481 tagtgttgta ggagtagctt ctaatggaga tgatttagcc cttgtacttg caaacaatac
      541 tatagttctt gcaaatcgtt ctttgggtat taaattcagt caaaccctaa cctcagctcc
      601 agcccaagac agtcgtaccg ctaatcctat atttttagac aatatcatcg tttatccaac
      661 actagatggt aaaattttaa ttctttcaag aaacaatctt caaatcatta aagatgtggt
      721 tatttcagca gaaaattttt tcaacaatgt aatccatcta agtgtaatcg gagataaact
      781 tatagcagca acagctaaaa aaatcattgt tgtaagccct gctagaactc tttatcttga
      841 cgctgacata aaagatgttg cacttagcga tgatggtatt tttatactag aaaaagatgg
      901 cactattatt aaaactgatt ataacttaag aaaaattgcg ggaaaaaaat ttgaatttgc
      961 tatttttgta aaaagcaata tatacaataa ttatttatat atttttgaaa aaacaggcta
     1021 tcttatcaaa atgaatctga atttagataa tgcacaagta tttaaacttt cagaagctgt
     1081 tgataaaatt tctttcatgg gaaatggtaa attttactac ggagataaaa ttttagattt
     1141 gctatgataa aaattttaga acaaacaata aaggctttaa aattaaattt aaagccctat
     1201 gacttaagta tgttgactag aaaaaaaagt tatatttgtg ctaaagatca aaataacatt
     1261 ctttttatgt atacaggaaa aacaaaattt ttaatgaaag atgccttatt tttagaaaat
     1321 ctagcacagc aaattaacat aaataacaaa tattttttta gtatggcttc tctttgctct
     1381 aaagcaaaaa atcatctaga aatgaaagga tttaatatct atgttgctct gtgatattgg
     1441 gaattcaaat gctaatttcc tagatgataa caaatatttt actcttaata tagatcagtt
     1501 tttagaattt aaaaatgaac aaaaaatttt ttatatcaat gtcaatgaac atctcaaaga
     1561 acatttaaaa aatcaaaaaa attttatcaa tcttgaacct tattttttat ttgatacaat
     1621 ttatcaagga ttaggaatcg atcgcatagc agcttgttat actattgaag atggagttgt
     1681 tgtagatgca ggtagtgcta ttacaattga tattatttct aattctatac atcttggtgg
     1741 ttttatcttg ccaggtattg caaattataa aaaaatttat agccatattt caccacgatt
     1801 aaaaagtgaa tttaacactc aagttagtct tgatgcattc ccacaaaaaa ccatggatgc
     1861 tttaagttat ggtgttttta aaggaattta cctactgata aaagatgccg ctcaaaataa
     1921 aaagctttat ttcactggtg gagatgggca atttttagca aattatttcg atcacgcaat
     1981 ttatgataaa cttttaatct ttcgaggaat gaaaaagatt ataaaagaaa atcccaattt
     2041 actttattaa aaatgttaca aaaattctca ttaatatcaa accttaatga aatttaactt
     2101 tttgtaaaac aaattcaatt aaacttctat ttagaaaaaa gtttattaaa ataaaaaaag
     2161 gaaaaacaat gagccaacaa gaatttgatg tgcttgtcat cggagctgga atttcaggag
     2221 cagcattatt ttacgagctt gcaagatata caaatattaa aaatattgct ttgatagaaa
     2281 aatataatac agctgcaaca ttaaattcta agggaacgag taattctcaa accattcatt
     2341 gtggagatat tgaaaccaat tatactttag aaaaagcgcg aaaagtaaaa agaacagctg
     2401 atatgatagt taaatatgga ctcatgcaaa atgcgcaaaa taatttcatg ttttctcatc
     2461 aaaaaatggc tctagctgtt ggagatatag aatgtgatta tatgaaaaaa cgctatgaag
     2521 aatttaaaga actttatcct tatataaaat ttttcgataa agcaaaaatc aaacaaattg
     2581 aacccaaagt tgttttagga gaagattgca atcaagatag acctgaaaat atctgcgcca
     2641 tgggtgttga aagcggcgag gtttttacaa ctgtagattt tgggaaaatg agtataaatc
     2701 taatagaaca agctcaaaaa caaaataaaa atactttcgt tgcctttaat caagaaatta
     2761 ttcacataga aaaaaaggat gatattttta tattaaaaac ctcaaatcat caagaatacc
     2821 atgccaaaag cgtagttgtc aatgctggag cgcactcttt atatttagca cataaaatga
     2881 acttaggtat ggataagtct tgttggcctg ttgcaggaag tttttattta accaaacaaa
     2941 aacttttaaa tggtaaggtt tatatggtgc aaaatcctaa acttccattt gcagctcttc
     3001 atggagatcc tgatttgctt gctgatatga acacccgctt tggacctacc gcacttgtta
     3061 ttccaaaact agaacgttat catggtctaa aatcagttcc agaatttttt gaagcactaa
     3121 aacttgataa aactgtttta aaagtaactt ttaatatgtt taaagatgca acaattagaa
     3181 attacatctt ttataattat ctttttgaac taccttttgt tgataaaagc ttatttgtta
     3241 aagatgccaa aaaaatagtc ccaagtctta aagcaagcga tatttattat gcgaaaggtt
     3301 ttggaggcgt aagaccgcaa gttattgata aaactaaagg agaattaatg ctaggtgaag
     3361 caagcatcac agaaacccct ggtattattt tcaatatgac tccaagtcct ggagcaacaa
     3421 gttgtctagg aaatgctgaa agagatgcaa agcttgtatg taattaccta ggaatggaat
     3481 ttaacgaaga taaattttct tcagaattat tgtaatcatt ttgtttctat ttttagctac
     3541 aataatttca aaaggagttt accatgctta aaaaaacaaa aattgtagcc acagtaggtc
     3601 cagcaagtga aaaggaagaa attctacgcc aaatgattat caatggtgta aatgttttcc
     3661 gtttaaactt ttctcatgga acacatgagt atcataaaaa aaacttagat accataagaa
     3721 gagtagctaa agaattgcat actcgtattg gaattttaca agacattagt ggtcctaaaa
     3781 ttcgtacagg tgaacttaaa gaaccatttg aattaaaaaa gggtgataga cttgattttt
     3841 atcgtgaaac aattttaggg gagaagattg ctcaaaatca ttataaaatc agtatcaatc
     3901 aaaaatccat tttagatatg ttaaaaattg atgaatatat ttatctgtat gatggatcaa
     3961 ttcgtgctaa agtagtaaat atagataatc aaaaaattga aaccattata gaaaatgatg
     4021 gttttttaaa ctcaaataaa ggtattaatt ttccgaatac taaaatcaat attgatgtta
     4081 ttacacaaaa agataaaaat gatttacttt ggggtataaa aaatgaagta gattttttag
     4141 caatatcttt cgtacaaaat gcgcacgata ttgatgaagt tcgtgaaatt ttagcacaaa
     4201 ataacgcaaa aatatctatt tttgcaaaaa ttgaaaaatt tgatgcagta gaaaatattg
     4261 atgagattat taaatctagc gatggtataa tggttgcaag aggagactta ggtattgagg
     4321 taccttatta taaagttcct aatatccaaa aagaaattat acaaaaagca aacaatgcct
     4381 ctaagcctgt tattactgcg actcagatgc ttttttcatt agccaaaagc aaaaccgcca
     4441 caagagctga aatttcagat gttgcaaatg ctgttttaga tggaacagat gcagtaatgc
     4501 taagtgaaga aagtgccgtt ggtatagatc ctgcaaacgc tgttgatata atgtgccaaa
     4561 ctataataga aacagaaaaa cgctatccat ataacaaatt taatgatttt aatgatttag
     4621 acaatacaga taaaatcatg cgttcttcag ctcatcttgc aacagatctt aacgctgatg
     4681 ctattttttc tttaacaagt agcggaaaat ctgctattaa gattgcgaga tatcgtccaa
     4741 atatagaaat catagcagta gggcattctg aaaaaacctt aaactcttta agtatagttt
     4801 ggggagttaa tcctgcaatc ttggttaaca aaagtaatga acttacagaa ttattaaaag
     4861 actctgtaag atcaagtgtt gaaaaaggtt ttatggatga agataaatgc tatcttctaa
     4921 ctgcaggctt tccaacagga gtagaaggta ctagcaatct tatccgcatt ctcaataaag
     4981 agcaaattgc ttattatcta caataaaaca ttaaattcct ttgaaaataa ggaatttaat
     5041 gtccttataa attttttaag tcaaaagtcg atataaatta aagcctcaca caaaggagca
     5101 aatatgcaag tgaatacttt ttcaaatatc gctagcatgg cacgaacaca agttagcaat
     5161 aagaaggcag atgatgctaa ggaaaacaca aaagacaaaa atgttcaaag tgctaattct
     5221 agcaaggatg tagataaaaa tacccttgaa aaattaaatg cacttggtgg aaaaggcatt
     5281 acacaaattt acctagttca gtttcaacag caaacaatga atgctgtaat aggttcgagc
     5341 aatgcccaaa ctggactaga tagtctttta aatggtgcca atttagatac tgcgaaatct
     5401 atacttacaa atattgattt tgcatcctta ggctacagta gcaaaaatcc acttgatatg
     5461 aatacagatg aacttcaaca acttgtaagt gaagatggtt tttttggagt ggaaaataca
     5521 gccaatcgca tcgcggattt tgttattaaa ggcggtggcg acgatgttga aaaattgaaa
     5581 aaaggtcttg aaggtatgaa aaaaggattt gagcaagcag aaaaaatgtg gggtggagaa
     5641 cttcctcaaa tcagtcaaaa tacaatagat gcggcactta aaaaagttag cgatcgcatt
     5701 gatgaactag gcggaaaaac tctagatctt caagcttaac taaaaatgct tagaaatttc
     5761 taagcatttt tagttgttat taatatcaaa agtaaaaaat tcactcttaa aattattagg
     5821 taaagtttta tactgagata tcgcagcttc atagttcttt acttcttgat acaacatacc
     5881 aagagctgct ttactctctt tgttattttt atctgtaagt ttagaaagct gcaaaagcgc
     5941 tatagctgaa tttggattat ttgcacctac ggctgctacg gctgctaaaa ataaagtttt
     6001 agtatctttt gctccataat catcaatcaa agaattataa agcgcataag cctcctcgta
     6061 ttgctgtgca aaaatatcca aataagctaa agtttgtaaa ataccctcat cttttgctcc
     6121 tgaaacatta atcaactctt taaatttctg tctttctaaa tttaaaagcc ctgcaatatg
     6181 cattaaatta acataaaatt ccctagctat atttggccca ccaaaaacac tacgataatc
     6241 aagttttaaa tttttaaaat gaatttgagc attttgagca tattctttaa tatttaaatt
     6301 tgaatttaaa gaattaaaat acaaaatatt tgccaaaata tcttcaggca actctgaacg
     6361 caatttagca attttcacat ctacttgatt attaaggtta ttatttttag caacaatagc
     6421 ttcaaaaatc aaactcaaag gcgtatcttt ttttgtttca tctaaataag gaagcataga
     6481 aatataatta ttattaacta aaaataacat acttttttgc atattagctt taaaattaga
     6541 atcagcagct atattatcaa gaatttcatt gtaaagttta gttgtatcaa tatcaattaa
     6601 ttttgcacaa aacatagcaa aagcacctgc taagtaattt ttaggattaa gatgatatga
     6661 acttgaaaaa tgcttataag caagttcata attttgcatt tgggcataag ttaaagccaa
     6721 attataatgt aaaatactat gttctggata atccttgata agtttttgaa attcttggtt
     6781 agcaaggcgt aacttctgat ttaatgcata gttaataata ttggcaattt ttacattggt
     6841 agatgaaaga gccttgctta tattaagata aattcccgca tcagtactat catcaacgaa
     6901 atctgtaaca ttagcttttt taatatataa agcagcctgc ttactatcaa aaacctgata
     6961 aggtgcaaaa taaaaaagca aatcgaattg atctttttgt ttttttagca aatcttttga
     7021 aaaagaattt tgagcaactg ctatattaaa aagatcctta tttaaacgaa cttgaatttt
     7081 ataagtatct aaaatcttat atctatcttt atcgttatca taagaatttt gcaagcgcgc
     7141 taacatatct tgataatttc ctgttttaat atcaaccaat gttaaagccg ccaaactctg
     7201 attaaaatct ctttcaattt tcatcgctgt acttaaagcg actttagctt tagcatattc
     7261 tcctattcta gcgtataaaa gacctaaaga taaactagat tcaaaattgc cttgagaatt
     7321 taattgctgt atagccttgg aatcaaagtc catttttgca taaattttag cagacaaata
     7381 ctttgcaaca tcagaatacg gctccacatc tgttctttgt aacatttgta aggcctcagg
     7441 gtaatatcct ttgtaataat taatcaagct taaataataa tcatataatt ttgattttcc
     7501 ttcttttgga agatacactt gagctaaatc aatataatat ctaaattttt ccttatcatt
     7561 aagctttaaa gcacaaacag cagcattgat agcagctaca ctttgatttt ctccattggc
     7621 tatagctttc ttgaagcttt caaaagcttc ttggaattta ttctcattca tttgagaaac
     7681 gcctaaatta taattagata aagattcatt atatacggca acttgctcat aaacttttaa
     7741 agcctgttca acctcaccct ttaaatataa agcatttgct ttttggatca taccatcaat
     7801 tctttgcata tcattgtatt tatatgattc atcaggcata ataacaggtt gttctaaagg
     7861 cttagaagct ataatatctg gtttaatttt tccttcacta aaagttaaat aaaaaagtgt
     7921 aaaaactaaa atacaaataa tccccaaaga taaacccaca agagacataa acttacgatc
     7981 tttataccaa ggcgtaggct cttgactttc aacttcttca aaagttgata catcttcagg
     8041 cgcactttct cttgtaaatt taaaaccact ttcactattt tcttgaggta attcttctgg
     8101 caatgatgca aattcttcat cttctggagc ttgcccctct tgccctttaa atccctctaa
     8161 actctcatca agtcttggtt gatttaagcc atcttcgggt ttttctagta ttatatcttc
     8221 ttgttcagcc atctatactc tttaaaaata ttttttcaaa acatcaggaa tatgaatttt
     8281 tccttcttta tcttgataat tttccataat cgctaccaag gttcttccta ctgccaaaga
     8341 tgagccatta agagtgtgga cgagttcatt ttttccttgt tcgtttttat agcgaatttt
     8401 agcgcgtctt gcttgaaaat cacgacaatt tgaaaccgag ctgatctcac gatatttatt
     8461 ctgtcctgga agccacactt caagatctac agtttttgct gcactaaaac ccaaatctcc
     8521 agtgcaaagc atcaaatgtc tatgcgctaa acctaaagaa ctcagcaaat cacttgcaca
     8581 ctcaagcatt tcattaaaca cactatcact ttgctcaggt ttagtgatac ttacaagctc
     8641 tactttttca aactggtgtt gtcttataat accccttgta tcacgccctg cactgcctgc
     8701 ttcttttcta aaacaagcac tataacaagt catttttata ggtaaagttt cactcgctaa
     8761 aatttctccg ctgtaaagat tggttactgg aatttcagaa gttgagatca aatacaaatc
     8821 ctcatcatct accttataca tatcttcttt aaattttggc aactgacccg tcccaaacat
     8881 agtagcacca tttaccaaaa aaggtacatt aacaaattca aatccacgac ttctattaaa
     8941 atctatcata taatttacca aagcacggct taataaagct ccttcatttt taagcacaca
     9001 aaaacgactt tgtgaaattt ttaccccacg cataaaatca agccaattta aactctcgcc
     9061 taattcaaaa tgttcttttg gagtaaaatc aaagctaggt ggatttaaaa cttttttaag
     9121 ctccacattt tcattttcat cttcacccac aggcacacat tcatcaggga tatttgggat
     9181 ggcatgagcg atttcctcaa gctcattttc taaagcattt actttagcgc tttgctcatt
     9241 aattttgctt ttattttcgc ttaattttgc ttttaaactt tctttatctt cggctgtagc
     9301 aagctcttta ctgaatttat tttgaaaagc ttgaaattct tccaaggcta ttttttcttt
     9361 ttttaaactt gcaaaaagtt cagcaagttt ttttaagata ttttcatcaa cttttttatt
     9421 ttttaacttt ttagccactt catcaaaatt attttgcaaa ttttttaaat ctagcatttt
     9481 ctactcctta aagtccgatt ttttcataaa ttttttgcat tttttcttgg gcgatttttc
     9541 ttgcttttgt cgcaccaaaa tccaaaattt ctttcaaatg cgaaggcttt tctaaaagct
     9601 cattatattt ttctcttgct tctttaaaat aagcatttac aagctcgttt aaatatattt
     9661 taaaatgtcc ataaccctca ccaccttttt catagcgtat ttgtaattct ttttgccctg
     9721 attcatctaa aaaaagcttt gcgattttaa aaatattgca gttttcatga tcttttggat
     9781 cttctaaagc ggtactatct gtaactatgg aagaaatttg tttttttaag gttttttcac
     9841 tgctaaaaat atctatagta ttttgataag atttactcat ttttgctcca tcagtaccca
     9901 caaccacagc tacttcttca ttaactctcg cttctggaag ggtaaaaatt tcaccccatt
     9961 cattattaac ttttaaagca atatcgcgtg cgatttcaac atgctggatt tgatcttttc
    10021 ctacagggac aattcgtgta tcaaaaagta aaatatctgc cgccattaaa acaggataag
    10081 aaaaaagccc atgtgaagca ctaagtccct tagcaacttt atccttgtaa ctatgtgcac
    10141 gctctaataa acccatagga gtaaattgcg ataaaatcca ataaagctcc ataacttcct
    10201 taacatcact ttgcaaccaa aaaacgcttt tttgaggatc tataccaagg cttaaaaaag
    10261 ccgcagcagc ttttaaggaa ttttgtttaa gtttttctcc atcttgagaa gaagtcatgg
    10321 catgataatt agcaataaac ataaacattt ggcttttttc ttgtgcatct accatttgct
    10381 taatcgcacc aaaataatta cctatatgca aatcgccact tggctgaagg cctgttaata
    10441 ctctcatttt atcacctttt taatctcgct taaaagctca tctatatttt tattttctat
    10501 atttaaaata aaatttgcct tttgttcata cttgcttaaa cgctcattat ataatttttt
    10561 tgctttaatt tcatcataaa ataaaggtct tttagaaatt tcatctttgt ctaaacgctt
    10621 ttttaaatat tcaaaatctg cttttaaata aatacaaaaa cctgcttttt ctaaatttga
    10681 aacattaaca aaacccccac ctgtagcaat acaagctttc tcacaagaac taaaaaaatc
    10741 agccattttt tgctcttgtt ctctaaaaaa attttccctt ttttgttcaa aaatttcact
    10801 gactttttga ttaaattttt gttctattaa aaaatcacta tctaaaaaaa caagatctaa
    10861 atccttagct aaagctcttg ctaaagtgct ttttccagaa cccataaatc ctataaaaac
    10921 gatattttta gctttcatca ttttctttac tgcccttttt acgcgaagca atcactaaag
    10981 gcacaccttc aaaattaaat tcttttctga tttgattttg taaataacgc ttatagctaa
    11041 aatgcaaggc cttaggacga ttcataataa gtgcaatttt tggcggtgct aagtcatatt
    11101 gtactgcata ataaatttta accaatttcc cataatcatg cggcaaagga tgtgctcttg
    11161 tggcattttc tatcaaggta ttaagcttag aagtttggat tttttgagtg aaattttcaa
    11221 aaatttgcaa aattttatcg agtaaaacat gcaccctttt tccacttaaa gctgatacgc
    11281 taatcacggg tgcgtaagct agaaatttaa aacgatcaag acgcaattct tttacagtct
    11341 tatcaaaatc catctcactt ttatcccatt tatttaaaac aataatcaca cccaaataat
    11401 gcttagccac aagcccagca atgcgttcat caagctcgtt aaagccctca tgcgcatcta
    11461 aaaccaaaag tgctatttga gaatgagata aaattttttc cgtgcgattt agggcaaagc
    11521 gttcgagtcc ttgaatttta cccctttttc taatacctgc agtatcaaca aattctatca
    11581 ctttatcttt atgaactaca ctttcattaa caggatctat agtagttcct gcaatagaac
    11641 ttacaacact gcgttcttgt ttaaccaaag catttaaaag acttgatttt ccaacattta
    11701 cacgccctac aatacccact ctgatatgat tttgatcgac ttctttaaat tgaaattctt
    11761 ttccttcttc ataatactct aaaaaatctt ctaaattttc ttcttcatcg gggattaaaa
    11821 actcttcatg taaaaatttt tcaagccatt cataaagttc atctaagcct acattatggg
    11881 ttactgaaag attaaagatt tcctttacgc caaaatttgc aaactcccaa gccctttctt
    11941 catctttttt attatctact ttattaatca ctaaggctat aggttttcca agttttttta
    12001 aagaataaaa aaactgtcta tcctcatcat caggcgctaa tttcccatca actagataaa
    12061 gtatgatatc gctttcttta gctactttta aagtgttttt tttcacattt ttaaaaagtt
    12121 catcactttc atcaagccct ccactatcaa taagcatggc tttttttgaa tgaatatgaa
    12181 tttgcgtttt atttgtatct ctagttgtgc ctgaaatatc acttgtaata gctattcttt
    12241 gtcttgccat tctattaaaa aggcttgatt ttcccacatt tggcttacct ataagtataa
    12301 tgctttgcat ttttttccta gaaaattata tttttaaaat tatataaaat ttggcttaat
    12361 attaagcaaa aaaagactag aattaaccca gattttagtc aaggaaaaaa aatgctaaaa
    12421 gtaatcaagc ataatttagg aatttatttc atgattttag catgtttgga ttttgcactt
    12481 atgggagctt gtgcaaaaat tcttagcaag gaaatgagtt ctatagaaat tatgtttttt
    12541 agaaatatca taggaatttt tttcatagtc tatcttttaa aacgatctaa ggcacataaa
    12601 gaagggggat atttttggct cttggtattt cgtggagtag taggcacgct ttcactatat
    12661 atgtttttct ataatgtttc aaatattaca ctaggtggag cttttgcttt tcaaaaaact
    12721 gctcctattt ttattacttt aatagctttt gttgttttta aagaaaatat tggcatcaaa
    12781 ggctggatag gaattttaat agcatttggt ggagtgcttt taatcgctca gccttgggct
    12841 cataatttaa atcattcagg ctttgattta aaaaattcag ttataggtat cacgagtgga
    12901 tttttagccg ctttagctct tacaagtgta agagaactta gaaaatctta cactacagaa
    12961 caaattgcct tttcttttat ccttttagga accttaatgc ctttaatttc tatgatcagt
    13021 gctgaatttt ttgaaccaca gcatcttgat tctttacatt tagatttcat tctagcacct
    13081 tttgtgatgc caagtcttac agcttggctt atcattgcca ttatgggaac tttaggcacc
    13141 atttatcaaa ttcatgtcac taaagcttat ggtatcgcta aacaagcagg agtggttgcc
    13201 ggagttagtt atcttgatgt agtatttagt atgatagttg ggataatttt gggagataat
    13261 ttaccaagta ctatggtttt tttaggtata ataggcatta tttttggtgg attaatttta
    13321 gttaagaaca aaggaaaaaa atgaaaaaaa tgatactcat tgctggtcct tgcgtgatag
    13381 aaagcaaaga tttgattttt aaagttgctg aacagttaaa aaattttaat gaaaatccaa
    13441 atatagaatt ttatttcaaa tcaagttttg ataaggccaa tcgcacaagt attaattctt
    13501 ttcgaggtcc tggtcttgaa gaaggattaa aaattttaca aagcgtaaaa gatgaatttg
    13561 gtatgaaaat cttaaccgat atacacgaaa gcaatcaagc aaaccctgta agtgaagtag
    13621 ctgatgtctt gcaaattcct gcttttttat gtcgtcaaac cgatttactt gtagccgcag
    13681 caaaaactaa ggcaaaaatt aatatcaaaa aaggacaatt tttaaaccca agcgatatca
    13741 aatacagcgt taaaaaagtt ctacaaaccc gtggtataga agatgaaggc tatgaagctg
    13801 ctcaaagaaa tggtgttttt gtagctgaaa gaggggctag ctttggctat ggaaatttag
    13861 tagtagatat gcgttcttta gttatcatgc gtgaatttgc tccagttatt tttgatgcta
    13921 cccatagcgt acaaatgcca ggggctgcag gtggaagtag cggagggaaa agcgaatttg
    13981 tagaaccttt agcaagagcg gcagcagccg taggcataga tggctttttc tttgaaacac
    14041 atattaatcc ttgcgaggct ttatgcgatg gacctaatat gcttaatctt acacgcctta
    14101 aaaattgcgt taatacatta ctagaaatac aaaatatcat aaaggaaaac aaatgaatat
    14161 tattgaagga aaattaaatt tagactcaaa tacaaaaatt gctatcatta atgcaagatt
    14221 taatcatatc atcacagatc gccttgtaga aggagcaaaa gatgcttttt taagacacgg
    14281 gggcaaagag gaaaatctaa gccttatact tgttcctggt gcttttgaac ttccgtatgc
    14341 gttaaaaaaa gctatagaaa gcaaaaaatt tgatgcaatt tgttgcgtag gcgcagtaat
    14401 tcgtggctca actccgcatt ttgactatgt ttcagcagaa accaccaaag gcatagccaa
    14461 tgtgagttta aatcataata tccctgtaag ctttggtgtt ttaactacag atacaataga
    14521 acaagccata gaaagagctg gaagcaaagc aggcaataaa ggctttgaag ctatgacaac
    14581 tgtaatcgag atgttaaatt taagcaagga gctttaatgg caacgcgtca tcaagttcgc
    14641 caaagcgtca tctccttact ttatgctttt gaattaaatt ctcaaaacaa cgtttttgta
    14701 gatgaaattt tagatgaaaa aaaaatacgc aatgaacaaa aaaattttac tttaaattta
    14761 tataatggaa ttttagataa tttaaacaat attgatgaaa ccttaaattc atttctaaat
    14821 gataatcaaa ttacagcttt aggacatgta gaaagagcta tactaagact tggagcttat
    14881 gagttacttt ttaccgatac tcctagcgcc attgtcatca atgaggctat agaacttgct
    14941 aaagaacttg ctaatgacaa ttctccaaaa tttataaatg gagttttaga tgccttaata
    15001 aaggctaaaa aatgaagctt tgtgtcgcac ttgatctttc tacaaaagaa gaatgcttac
    15061 aacttgccaa agaattaaaa aatttagaca tatggttaaa agtaggttta agagcatatt
    15121 taagagatgg ttttaaattc atagaagaac ttaaaaaagt tgatgatttt aaaatatttc
    15181 ttgatcttaa atttcatgat attcccaaca ctatggcaga tgcttgcgaa gaagtatcaa
    15241 aacttggtgt tgatatgatc aatatccacg caagtgctgg aaaaatagcc atacaagaag
    15301 ttatgacacg gcttagcaaa ttttcaaaaa gacctttagt tttagcagtt tctgctctta
    15361 cgagttttga tgaagaaaat ttctttagta tttatagaca aaaaattgaa gaagctgtaa
    15421 ttaatttttc aaaaatatcc tatgaaaatg gacttgatgg tatggtatgc tctgtttttg
    15481 aaagcaaaaa aattaaagag cacacaagtt caaatttctt aacccttact cctggaattc
    15541 gtccttttgg agaaacaaat gatgatcaaa aacgtgttgc taatcttgca atggctagag
    15601 aaaatttgag tgattatatc gttgtgggaa ggcctatata taaaaatgaa aatcctaggg
    15661 ctgtatgtga aaaaatttta aacaaaatac acagaaaaaa tataagcgaa aacgatatag
    15721 agcaaaatta tgaagtaatt cagcaaaaag aatgggatat gtgtaatcac tttgaagaat
    15781 ggattaaaac tcagcctgat aaagaacatg ctttaaaaga attttatgct aagtgtggga
    15841 taaaatattg aattatcaac aattagaatg cgattacttt aatctttaca atcagtttct
    15901 tagc
//
LOCUS       DAPOLW010000028        15337 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.028, whole genome shotgun sequence.
ACCESSION   DAPOLW010000028 DAPOLW010000000
VERSION     DAPOLW010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15337
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.028"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            73..675
                     /locus_tag="ROE18_000627"
     CDS             73..675
                     /locus_tag="ROE18_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDX3650827.1"
                     /translation="MKRNEHNIVLIKNPNFNALIDTGFLDTIDTLKEKLHIHKTDFKD
                     ITHIILTHAHPDHIGALMSEENLFPKAQILIDKKEYDFWIKSDRQEIKNTLLKLKNIE
                     FIDHSKDLIFQNSGIKAIPAYGHTPGQNAIIIDDKIVFWGDLLHLYDIQIPKPKIAIK
                     FDIDQNEAIQTREKLLKEFKERKLKVIGTHVPFIKPKFLD"
     gene            763..981
                     /gene="infA"
                     /locus_tag="ROE18_000628"
     CDS             763..981
                     /gene="infA"
                     /locus_tag="ROE18_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HDX3650828.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            1153..1266
                     /gene="rpmJ"
                     /locus_tag="ROE18_000629"
     CDS             1153..1266
                     /gene="rpmJ"
                     /locus_tag="ROE18_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HDX3650829.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            1269..1634
                     /gene="rpsM"
                     /locus_tag="ROE18_000630"
     CDS             1269..1634
                     /gene="rpsM"
                     /locus_tag="ROE18_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HDX3650830.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            1644..2036
                     /gene="rpsK"
                     /locus_tag="ROE18_000631"
     CDS             1644..2036
                     /gene="rpsK"
                     /locus_tag="ROE18_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HDX3650831.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            2064..2690
                     /gene="rpsD"
                     /locus_tag="ROE18_000632"
     CDS             2064..2690
                     /gene="rpsD"
                     /locus_tag="ROE18_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HDX3650832.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     IVYRMGFATTRRFARQLVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            2703..3716
                     /locus_tag="ROE18_000633"
     CDS             2703..3716
                     /locus_tag="ROE18_000633"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HDX3650833.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGDSNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDAYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            3720..4073
                     /gene="rplQ"
                     /locus_tag="ROE18_000634"
     CDS             3720..4073
                     /gene="rplQ"
                     /locus_tag="ROE18_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HDX3650834.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFASLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVV"
     gene            4246..5145
                     /gene="hisG"
                     /locus_tag="ROE18_000635"
     CDS             4246..5145
                     /gene="hisG"
                     /locus_tag="ROE18_000635"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HDX3650835.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCTLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYESRACLIQKENALSKEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            5153..6439
                     /gene="hisD"
                     /locus_tag="ROE18_000636"
     CDS             5153..6439
                     /gene="hisD"
                     /locus_tag="ROE18_000636"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HDX3650836.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAISAKDEISKIVSSIIKEVQEKG
                     DKALIEQALKFDKAEISKIKITQEEITQASNRLDKDLQEAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALTYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGAAIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAK
                     KASDEVQSQLELLPRKELASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVTFRLESLK"
     gene            6436..7494
                     /gene="hisB"
                     /locus_tag="ROE18_000637"
     CDS             6436..7494
                     /gene="hisB"
                     /locus_tag="ROE18_000637"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HDX3650837.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLRFEKDAIPTLLKLK
                     KFGFKFVMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVRGLKYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKVSIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGVSLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            7491..8078
                     /gene="hisH"
                     /locus_tag="ROE18_000638"
     CDS             7491..8078
                     /gene="hisH"
                     /locus_tag="ROE18_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDX3650838.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKLFL
                     PGVGTAKEAMKNLEQFNLINFIQNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKAKEGFTFPHMGWNEVYSSHALFKGLEGAYFYFVHSYCVGLGKYTIADCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGEILISNFIKDIG"
     gene            8075..8806
                     /gene="hisA"
                     /locus_tag="ROE18_000639"
     CDS             8075..8806
                     /gene="hisA"
                     /locus_tag="ROE18_000639"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HDX3650839.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIFPNICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSVEEGIRCLAN"
     gene            8791..9747
                     /locus_tag="ROE18_000640"
     CDS             8791..9747
                     /locus_tag="ROE18_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG2958 family protein"
                     /protein_id="HDX3650840.1"
                     /translation="MSSKLSYKELTLEILKQSDRPLSVNEIWQKALEQGLDKKLSSIG
                     QTPIATLGARIYVDIKELQHNSLFIKASQKPTTFWLKERENELLKLDNKNEITNEKQE
                     KNKFHERDLHPLLVKFLYENLDFNLNCKTIYHEQSKKGKGGEDKWNYPDIVGVYFPYD
                     DYEKETITLLENIKQNSYKLFSFELKIALNFSNLKECYFQAVSNSSWANEGYLVVLQE
                     IDSEVLSELRRLNQSFGIGVIKLEKDISNSQILISAKEKELDIQTLNMLINKNPNFKE
                     FIDDINKQIKVGKEAKIQANFDEIKSDEEMEKYLKEKCILEK"
     gene            9748..10515
                     /gene="hisF"
                     /locus_tag="ROE18_000641"
     CDS             9748..10515
                     /gene="hisF"
                     /locus_tag="ROE18_000641"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDX3650841.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINISFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKHSGKSTLE
                     WVKKVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKMEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            10517..11140
                     /locus_tag="ROE18_000642"
     CDS             10517..11140
                     /locus_tag="ROE18_000642"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HDX3650842.1"
                     /translation="MQNFKELNEKIAWQKVDNLLPVIIQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEESGNFLNIIDLSLDCDNDTLLILANPVGPTCHTGD
                     ISCFEKISKNADFVFLARLEKLINTRKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAATVKDKEELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(11165..12325)
                     /locus_tag="ROE18_000643"
     CDS             complement(11165..12325)
                     /locus_tag="ROE18_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
                     N-succinyltransferase"
                     /protein_id="HDX3650843.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     DGHQNIDLLKIIKDKFKDDEFSFVCLFEDKEPLSVESIYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(12351..13457)
                     /locus_tag="ROE18_000644"
     CDS             complement(12351..13457)
                     /locus_tag="ROE18_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HDX3650844.1"
                     /translation="MKEQILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIV
                     SANPEVANEIRKNTIEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPIAAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSKRYLMA
                     AEKIWSFIEKINNEGGADNSAIQPVMNGKSACSH"
     gene            13580..14695
                     /locus_tag="ROE18_000645"
     CDS             13580..14695
                     /locus_tag="ROE18_000645"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HDX3650845.1"
                     /translation="MSEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSF
                     YPFKKIVVTSSNITYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLV
                     SKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKAL
                     DQNLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDV
                     HEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMK
                     FKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEF
                     RINVKATTTEKLGFIGRKEGMAVLSSVNLKYFDWTRL"
     gene            14692..>15337
                     /locus_tag="ROE18_000646"
     CDS             14692..>15337
                     /locus_tag="ROE18_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDX3650846.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFDEYNGEKYYDI
                     ILLSTNTNNFLKAVGQFKHSIIILLISYISTDTVSNPLKLGASDYIQKPFMIEELIRK
                     IKHYQDFRKLSILNKAYQSYIKSRLETIKIPEYNYKKLKLPLILKSNKQSSADAFVFN
                     YANECDITLSFIDLTSTNSVEKVMKLPTENNLLFLSNFQALKAAEKEKLLDFIQN"
BASE COUNT         5700 a         2258 c         2685 g         4694 t
ORIGIN      
        1 aatttattat tttctttttt agtgccacaa agcgatgaag ataagaattt tatagaaaaa
       61 actcgcacaa aaatcaaaag aaatgagcat aatattgttc tgataaaaaa tccaaatttt
      121 aatgctttaa tagacacagg gtttttagat actattgaca cattaaaaga aaaattacat
      181 atccataaaa ccgattttaa agatatcact catattatct taacacacgc acatcctgat
      241 catataggtg ctttaatgag cgaagaaaat ctttttccaa aagctcaaat tttaattgat
      301 aaaaaagaat atgatttttg gatcaaaagc gatagacaag aaattaaaaa caccttgctt
      361 aaacttaaaa atatagaatt tatcgatcat tccaaagatt tgatctttca aaattcaggc
      421 attaaagcca tacctgctta cgggcatacc ccaggtcaaa atgctatcat aattgatgat
      481 aaaatagtct tttggggaga tttacttcat ctttatgata tacaaatccc aaaacctaaa
      541 atcgctataa aatttgatat agatcaaaat gaggctatac aaacaaggga aaaactactt
      601 aaagaattta aagaaagaaa actcaaagtt atagggactc atgtgccttt tatcaaacct
      661 aaatttttag attaattact taaaaattac taaaaattaa gtaaaaattt taataatttt
      721 tgctaaaatt atagcctttt tatttcatga aaggagaaaa ttttggcaaa agatgatgta
      781 attgaaattg atggcaccgt acttgaagca ttgcctaatg caaatttcaa ggttgaactt
      841 gacaacaaac atgtaatttt atgtcatatt gcaggaaaaa tgcgtatgca ttatataaga
      901 ataatgccag gtgataaagt aaaagtagaa cttacacctt atagccttga taaagggcgt
      961 ataactttta gatataaata atctaagtta tttaaaagct aattttagat aaaattagag
     1021 tttttgcgac aaattacatc gaactatatg aagaagtatt tttaaaatcc accacttatt
     1081 ttgaaaatag ttggttattc ataaaacctg atgtagtcgt aaatcaagtg gaattcattc
     1141 aaggagacgc tcatgaaagt gagaccatcg gttaaaaaga tgtgcgacaa atgcaaagta
     1201 gttcgccgta aaggcgtggt tcgcattatt tgcgaaaatc caaaacataa acaaagacaa
     1261 ggataaacat ggctcgtatt gcaggtgtgg atttaccaaa gaaaaaaaga attgagtatg
     1321 gactaaccta tatttatggt ataggacttt tcacttcaag aaaaattcta gataaagtag
     1381 gaatttctta tgataaaaga gttcatgagt taagtgaaga tgaagcagca gctatccgta
     1441 aagaaattca agaaaactat atggttgaag gggatttgag aaaacaagtt gctatggata
     1501 ttaaagcact tatggattta ggaagcttta gaggtttaag acacagaaaa ggcttaccag
     1561 ttcgcggaca aaaaacaaaa acaaacgcaa gaactagaaa aggtaagaga aaaactgttg
     1621 gtgcaaaatc ataaggataa atcatggcaa aaagaaaaat cgtaaagaaa aaagtagtta
     1681 aaaaaaatat agcaaaaggt attgtttata tcagtgcgac ttttaacaat actatggtta
     1741 cagtaactga tgaaatggga aatgctatcg cttggagtag tgcaggtggt ttaggattta
     1801 aaggttctaa aaaatcaact ccttatgcag cacaacaagc agtagaagac gctttaaata
     1861 aagcaaaaga acacggaatt aaagaagtag gcattaaagt acaaggacca ggaagcggta
     1921 gagaaactgc tgttaagagt gtaggtgcta tggaaggaat caaagtaact ttcttaaaag
     1981 atatcactcc attagctcac aatggttgca gaccgcctaa gcgtcgtcgt gtctaagata
     2041 taagaaaaat ttaggagaat attatggcaa gatatagagg accagtagaa aaattagaaa
     2101 gacgctttgg tgttagctta gcattaaaag gagaaagaag actagctggc aaaagtgcac
     2161 tagataaacg cccttatgca ccaggacaac acggagcaag aaaaggtaaa attagtgagt
     2221 atggacttca attaagagaa aaacaaaaag ctaaatttat gtatggagta agcgaaaagc
     2281 aattccgtcg tttatttgct gaagcagcaa gaagagaagg aaatacaggg gtattactta
     2341 tccaactttt agaacaaaga ttagacaata tagtatatag aatgggtttt gctacaacac
     2401 gtcgttttgc aagacaactt gtaacacatg gacatgtttt agtaaatggt aaaagagtgg
     2461 atattcctag ctttagagta gaagcaggtg ctaaaatcga aattatcgaa aaaagcaaaa
     2521 acaatcctca aattacaaga gctatcgaac ttacagcaca aactggaatc gttgcttggg
     2581 ttgatgttga aaaagataag agatttggaa ttttcacaag aaaacctgaa agagaagaag
     2641 ttgtcattcc ggttgaggaa agatttatcg ttgagcttta ctctaaataa taggggctaa
     2701 atatgagaaa tattacaaca tctgcttata cgccaacaga atttacaata gaaaacatta
     2761 gtgatactgt ggctaaaatc agtgcttggc cttttgagat cggctatgga atcaccctag
     2821 cccatccttt acgccgttta ctttacacta gcaccatagg atatgctcca actgcgattc
     2881 atattgatgg cgtagctcat gaatttgata gcatgcgtgg tatgcttgaa gatgtagcac
     2941 tttttatcat taatctaaaa aaactacgct ttaaaattaa aggcgactca aataaagaaa
     3001 tagtagaatt tagctttaaa ggctcaaaag aaatttacgg caaagatcta aataatgatc
     3061 aagtagaagt agtaaataaa gacgcctatc tagcaacaat caacgaagat gctgaactca
     3121 aattcacatt gatcgttgaa aaaggtattg gctatgtacc aagcgaagaa attaaagagc
     3181 ttataaatga tcctaaattt atagctttag atgctttctt tacacctgta agagaagcaa
     3241 cctatgatat tgaaaaagtt ttatttgaag ataatcctga ttatgaaaaa gtggttttaa
     3301 ccgtaacaac tgatggacaa atcactccaa atgaagcttt tcaaaatgct ctagaagcta
     3361 tgtataaaca attatcagta tttgataaaa ttaccaatgt tagaagtgta attaaaaatc
     3421 aagcaacaag caatgaacta gaaaatacta aattattgca aaacattaca gatttaaatt
     3481 taagtgctag aagttataat tgtcttgaaa aagcaggagt ggtttacata ggcgagcttg
     3541 ctttgatgag tgtaagtgaa cttgcagggc ttaaaaattt aggtaaaaaa tctcttgatg
     3601 aaattaaaaa catcatggaa agcataggtt ttcctgtggg aacttctaag cttagcgata
     3661 ataaagaaat acttaaaaat aaaatcgcag aattaaaagc acaaaacgaa ggataaagaa
     3721 tgagacataa acatggatat agaaaacttg gcagaacttc atctcatcgt gctgccttat
     3781 taaaaaattt aactatagct ttagtaaata gcggaaaaat cgaaaccact ctaccaaaag
     3841 ctaaagaatt aagaggttat gtagaaagat tgattactag agcaagactt ggagatttta
     3901 acgctcatag agcagttttt gcttcattac aagataaaaa cgctaccaat aaactagtaa
     3961 ctgaaattgc tccaaaattc aaagatcgca atggcggata tacaagaatc atcaaaacaa
     4021 gaattcgccg tggtgatgcc gctgaaatgg ctttcatcga atttgtagtt taatcaaatc
     4081 ctagcttttg ctaggattaa tacttcaatt aaatatccta aaaataaaaa gttttaaata
     4141 attattttaa ataaaattaa atttatttat tttctaaaac ccttgctaaa aattcaacta
     4201 cttatgctaa tataagtttt taatttttaa tttcaaggat atgttatgca agaaaacact
     4261 cgtttacgca ttgcgataca aaaatcaggt agactttcaa aagaatccat agagcttctt
     4321 tcagaatgtg gtgttaaaat gcatatccat gaacaaagct tgatcgcttt ttctacaaat
     4381 ttacccatag atattttacg cgttagagat gatgatatcc ctgggcttat ttttgatggg
     4441 gttgtagatt taggcattat aggggaaaat gttttagaag aaaatgaact tgaacgccag
     4501 tctttaggag aaaatccaag ctataagctt ttaaaaaagc tagattttgg atattgccgt
     4561 ctttctcttg ccttacctca agaaaataaa tttcaaaatt tgaaagattt tgaaggctta
     4621 aggatagcta cttcttatcc acaactttta aagcgtttta tgaaagaaaa tgggattaat
     4681 tataaaaatt gtacgcttac aggttctgtt gaagtagccc ctagggcaaa tttagccgat
     4741 gcgatttgcg atcttgtttc aagcggggca actttacaag caaacaatct taaagaagtt
     4801 aaagtcattt atgaatctcg tgcttgtttg attcaaaaag aaaatgcttt aagtaaagaa
     4861 aaacaagcct tagtggataa aattatgttg cgtgtagcag gagtaatgca agcaagagaa
     4921 tctaaataca ttatgcttca tgctccaaaa gaaaagcttg ataaaattca agccctactt
     4981 ccaggagttg aaagaccgac tatcttacct ttagcacacg atgaaaaaaa tgtagcttta
     5041 catatggtaa gtaaagaaaa tcttttttgg gaaaccatgg aggctttaaa agaagaaggt
     5101 gcgagttcga ttttagttct gcctatagaa aaaatgttaa agtgagtaaa aaatgcaaat
     5161 tttagtatat gataatttgg atgaaaaaca aaaagaagaa gcgttaaaac gccctgctat
     5221 aagtgcgaaa gatgaaattt caaaaatagt aagttctatc attaaagaag tgcaagaaaa
     5281 aggcgataaa gctttgatag aacaagcttt gaaatttgat aaggctgaaa tttcaaagat
     5341 taaaatcact caagaagaaa tcactcaagc aagcaatcgt ttagataaag atttacaaga
     5401 agctatttta gtggcttatg aaaatatcaa aaaatttcac gaagcccaaa tcccacatga
     5461 aatcgctctt gaaactacaa aaggcgttaa atgtgaagtt ttaacacgcc ctatagaaaa
     5521 agtaggactt tacataccag ggggtttggc acctttgttt tcaacggttt taatgctagc
     5581 tattcctgca aaaattgcag gttgtgaaaa aatcgtttta gcaagtcctg caaaaatcaa
     5641 tgatgctgtg cttttttgtg ctaagctttg tggcgtggat gaaatttatc aaatgggcgg
     5701 tgcaggagct atagcagctt tgacttacgg tacccaaagt gttttaaagg tggataaaat
     5761 ttttggccca ggaaatgcct ttgtaaccga agcaaaacgc caagtaagta gtgatataaa
     5821 cggagcagct attgatatgc aagcaggacc tagtgaagtt ttagtcatag ctgatgattt
     5881 agctaatgaa aaatttgtag ctagtgattt gctttcacaa gctgaacatg gtgcagattc
     5941 tcaagtgatt ttagtgtgtt taagtcaaga ttttgctaaa aaagcaagtg atgaagtcca
     6001 aagtcaatta gaacttttgc ctcgcaaaga acttgcaagc aaaagcattg ctaattcacg
     6061 cattatcata gctaaagatt taaatcaagc cttagaaatt tcaaatcttt acgcccctga
     6121 acatttgatc atacaaactc aaaatccacg agaactttta aaaggtgtaa aacacgcagg
     6181 atcagtattt ttaggagctt attccccaga gtctatgggt gattatgcaa gtgggacaaa
     6241 tcatgtttta cctacttatg gacttactaa aacgcattct agtttaggtt tggcagattt
     6301 tagtaaaaga atgaccgttc aagagttaag taaagaaggt tttttagctt taggtaaaag
     6361 tgttgaaatt ttagcacaaa atgagcattt agacgcgcac aaaaatgcag taacttttcg
     6421 tttagaaagc ttaaaatgag tcaaaaaatc ctttttatag atagagatgg cactttaata
     6481 gaggagccaa aaagcgattt tcaaatcgat actcttgaaa aattgcgttt tgaaaaagat
     6541 gctattccca ctcttttaaa actaaaaaaa tttggattta aatttgttat ggtaagcaat
     6601 caagacggtc ttggaacacc aagttttcca aaggaaaatt ttgaaatcgc tcatgaaaaa
     6661 atgcttgata ttttaaaaag ttgcggtata gaatttcaag atatttttat ttgtccgcat
     6721 tttgaaaatg aaaattgtgc ttgcagaaaa cctaaaaccg ctatgttaga agagtatatc
     6781 aaacacgaac tttatgataa ggaacaaagt tttgttatag gagatcgtga gagtgatatg
     6841 atcttggctt caaatttagg cgtgcgtggt ttaaaatacg gcgaactttc ttggaaagaa
     6901 atagaaaatg aaattttaag ttcttttaga agcgcgagtt atcaaagaac tactaaagaa
     6961 acagatataa aagtaaaggt atgcttaaat gggggtaagg ttagcattaa aacaggtatt
     7021 gatttttttg atcacatgtt agagcaaatc gctgtacatg gaggtatagg gcttgaaatt
     7081 tcttgtaaag gagatttgga aatcgatgag catcatagcg ttgaagatgt agccttagca
     7141 cttggagctt gtatcaaaaa agctttaggg gataaaatcg gcattgcaag atatggtttt
     7201 gctttaccta tggatgagtg tttggcaagt tgtgcaatgg atttttgcaa tcgtccccat
     7261 ttagtctata aagccaaatt taaaaaatct catttagggg ctttaagcac agaaatgatc
     7321 gagcactttt tttattcttt aagctatgct atgggcgtga gtttgcattt aaaagttaaa
     7381 ggcaaaaacg atcatcataa agccgaaggg ctttttaaag cctttgcaaa agctttgaaa
     7441 atggcagtaa aaatagaaag tgaaaattta gccagctcta aaggagtgat atgaaaatca
     7501 tcatcatcga tacagcctgt gcgaatttag catctttgaa attttgtcta gatagattag
     7561 gttttaatgc aactatcagt agggatttaa aagagcttga aagtgcggat aagctttttt
     7621 tacctggagt gggtaccgca aaagaagcaa tgaaaaattt agaacaattt aatcttatta
     7681 attttattca aaataccaaa aaacctttgc ttggtatttg tttaggtatg caaattttag
     7741 gaaatttttc tgaagaatta aatcaagaaa ccttaaaact catagatttt acaactcaaa
     7801 aatttaaagc taaagaaggc tttacttttc cacatatggg atggaatgaa gtttatagct
     7861 ctcatgcttt gtttaaaggc ttagaagggg cttattttta ttttgtgcat agttattgtg
     7921 taggacttgg gaaatacact atagcagatt gtgagtattc gcaaaaattt agcgcaagcg
     7981 taatgaaaga taatttttac ggagtgcaat ttcaccctga aagaagtagc gaggctgggg
     8041 aaattttaat ttcaaatttt attaaggata taggatgact caaatcatac ccgcactcga
     8101 tcttatagat ggcgaagtgg tgcgtcttgt aaaaggggat tacgaacaaa aaaaagtata
     8161 taaatacaat cccttaaaga aatttaaaga atacgaaaaa gcaggagcga aagaacttca
     8221 tcttgtagat cttacaggtg caaaagatcc tagcaaaaga caatttgctt tgatagaaaa
     8281 attagccaaa gaagtcagtg tcaatttgca agtaggtgga ggtatacgct ctaaagaaga
     8341 agttaaagct ttgcttgatt gtggagtaaa aagagtagtt ataggatcta tggcaattaa
     8401 agatgcgact ttatgtcttg aaattttaaa agaatttggt agtgaagcta tagttttagc
     8461 cttagatacg attttaaaag aagattatgt tgtggctgta aatgcttggc aagaagcaag
     8521 cgataaaaag cttatggaag ttttagattt ttatagcaat aaaggcttaa aacacatact
     8581 ttgcacagat atttcaaaag atggtaccat gcaaggagta aatgtaagac tttacaaact
     8641 tatccatgaa atttttccta atatttgcat tcaggcaagt ggtggagtag cgagcttaaa
     8701 agaccttgaa aacttaaaag gaatttgtag tggggttatc gtaggaaaag ctttattaga
     8761 cggagttttt agcgtagaag aagggataag atgtctagca aattaagcta caaagaactt
     8821 actttagaaa ttttaaaaca aagtgacaga cctttaagtg ttaatgaaat ttggcaaaaa
     8881 gctcttgaac aaggcttaga taaaaagctt tctagcatag gacaaactcc aattgctact
     8941 ttaggggcta ggatatatgt tgatataaaa gaattgcaac acaattcttt gtttatcaaa
     9001 gcttcccaaa aacctacaac tttttggcta aaagaaagag aaaatgaact tttaaagctt
     9061 gataataaaa atgaaattac taacgaaaaa caagaaaaaa ataaatttca tgaaagagat
     9121 ttacacccct tgcttgtaaa atttttatat gaaaatttag attttaattt aaattgcaaa
     9181 acaatttacc atgaacaaag caaaaagggt aaaggcgggg aagataagtg gaattatcct
     9241 gatattgtag gggtttattt tccttatgat gattatgaaa aagagaccat aacactttta
     9301 gaaaatatca aacaaaatag ttataagctt ttttcttttg aacttaaaat tgctttaaat
     9361 ttttcaaatt taaaagaatg ctattttcaa gctgtaagca attctagctg ggcaaatgaa
     9421 ggctatttgg ttgttttaca agaaattgat agcgaagttt taagtgagtt aagacgctta
     9481 aatcaaagtt ttggcatagg agtgataaaa cttgaaaaag atatttcaaa ttctcaaatt
     9541 ttaattagtg caaaagaaaa agaacttgat attcaaacac taaatatgct gatcaataaa
     9601 aatccaaatt ttaaagaatt tattgatgat ataaacaaac aaattaaagt gggcaaagaa
     9661 gcaaaaattc aagctaattt tgatgaaatt aaaagcgatg aagaaatgga aaaatatctt
     9721 aaagaaaaat gtattttgga gaaataaatg cttacaaaac gcataattgc atgtttagat
     9781 gtcaaagatg gcagagtagt aaaaggaaca caatttaaaa accataaaga tatgggagat
     9841 atcatagagc ttgctaggta ttattctcaa aatggtattg atgagcttgt tttttatgat
     9901 attgctgcaa gtgctagaaa agaacgcata tcaagagaat gggtaagtga agtagcaaaa
     9961 aatatcaata tttctttttg tgttgcaggg ggtattaaaa gcgaagaaga tgcagctgaa
    10021 cttttggcta atggggcaga taaaatttct atcaattctc ctgctttaaa tgatccaagc
    10081 ctaatcacac gccttgctaa aagctttggc gtgcaatgcg tagtagtagg gattgatagt
    10141 tttaaagatg aaaatggaaa tttaaaagta tttcaataca caggggatga aaaaacaagt
    10201 aaacatagtg gaaaaagcac tttagaatgg gttaaaaaag tgcaagatct gggtgcaggc
    10261 gaaattgttt taaatatgat gaatcaagat ggtgttaaaa atggctatga tttagaacaa
    10321 ttagaagctg tatataaaat ttgtaaagta cctttaatcg caagtggggg agcgggaaaa
    10381 atggaacatt ttttagaagc ttttaaacta ggtatagatg gggctttagc tgcttctgtt
    10441 tttcatcaaa aacttataga cattaaagaa ttaaaaattt atcttaaaaa tcaaggctta
    10501 agtataagga tataatatgc aaaatttcaa agaacttaat gaaaaaatcg cttggcaaaa
    10561 agtggataat cttttacctg tcatcatcca agatgcaaaa acttgcgaag ttttaatgct
    10621 aggctttatg aataatgaag ccttagaaaa aagcttagaa agtggcaaag tagtcttttt
    10681 ttcacgcaca aaacagcgtc tttggatgaa gggtgaagaa agtggaaatt tcttaaatat
    10741 catagattta agcttagatt gtgataatga cacgctttta attttagcaa atcctgtagg
    10801 gcctacttgt catacgggcg atatttcttg ttttgaaaaa atttctaaaa atgcagattt
    10861 tgtttttcta gccagacttg aaaaacttat taatacacgc aaaaatgccg atgaaaatac
    10921 ttcttataca gcaaaacttt tcaaaagtgg tacaaaacgc atcgcacaaa aagttggtga
    10981 agaaggcgta gaaacagctt tagcagcgac agtaaaagat aaagaagagc ttatttgtga
    11041 agcagcggat ttaatgtatc atttaagtgt tttacttgca gatgcaaatc ttagtttctc
    11101 agatgtgatt tcaaaattaa aagaaagaca taaagcttaa agctttatgt aaaataaatt
    11161 tatatcaatg caaggcttca ttaagtttga ctgctttttt atttaaagct actatcatag
    11221 caccacttat agaatcttga cggaaatgta gcccatttaa acctttaagc tctaagcctt
    11281 tgtaaatttc tttatcaaaa ttaaaataag gattaagttt agcaagttct tcggcatctt
    11341 tgagtaaaaa tttcgttcct tctagcactg caatacctgc atcaactata caattatccc
    11401 ctaaaggaat tcctgtcact gaattagccc ctaaaagaca agccttgcct acgcttatag
    11461 cattgccact tgttccactt aaaacaccta aaatcgaagc tccgccacct acatcagaac
    11521 cttctcctac tatagcactt gaactaatac gcccttcaac catacaagct cctgttgtac
    11581 ctgcattaaa attcacataa cttgcccctg gcatgatggt tgttcctgct gctaaagacg
    11641 cacccattct tactttagaa ctttctaaaa ttcttgtatt atcctcaggg ataatatgtg
    11701 ctaaaaatct tgggaattta tcaacaaaat cgatttttgg atattgattg ctcattttta
    11761 aacgcatttc atttgctctt aaatactcaa gctcgatagg cttatcatca ctccaagcta
    11821 cattgcttaa aagtccaaaa gctccattta aattgatact tcttaaaggt acttttttag
    11881 tagaaagcaa ataaagtttt agataaatac tttctacact taaaggttct ttatcttcaa
    11941 aaagacaaac aaaagaaaat tcatcgtctt taaatttatc tttgataatc tttaataaat
    12001 caatattttg atgcccatct tcttctaaaa aaggtttaaa acaagaaagt gcaaaatcaa
    12061 tatcttctaa tttcaaagtt tgcacaaact cactcgcatt aaaatcaatc tccacgcccc
    12121 tttgcataaa agcttcaagc atgattgccg ctgagccaaa attttgctca tagttaatca
    12181 aagcaaaact tgcttgtaag attttatttt tatttaactg tcctctatca agccttgcta
    12241 taccaaaagc tttaggtttt ttatagccac ttttttgctc gatttgtttg attaaaagta
    12301 aaaaatcttc tttagtatta atcattttct tttccttatc cacttaattt ttaatgcgaa
    12361 cacgcacttt ttccattcat cacaggttgt atagcagaat tatccgcacc accttcattg
    12421 ttaatttttt ctataaagct ccaaattttt tcagccgcca ttaaataacg ctttgaactc
    12481 acactttcag ggtgataaaa actcacaggc ttgccttcat ctccaccttc tcttactatc
    12541 atttctatag gaatttgtgc taagacttca cttttatagg cttttgccat atcctcagcc
    12601 gttcctttgc caaaaatatc atactcttta ccgttatcag gacataaaaa tccactcata
    12661 ttttcaatca cacccgctat aggaatgtga agtttattaa acatatctaa agctctttta
    12721 ctatcgtcta aagatacggt ttgaggcgta cttacacaaa ctcctgcagc aataggaatg
    12781 ctttgtgcag aagtaatttg cgcatcgcct gttcctggag gcatatccaa aaacaataca
    12841 tcaagctcag gccaaattac atcagctaaa agttgctcaa ttgctttcat gatcatagct
    12901 ccacgccaca taaggccttg accctcttcg atcaaaaccc ccatactcat catataaaca
    12961 ccatgagtta aaataggctt taatctctgc cctactactt caggctgagt tttggtttca
    13021 cctagcattc ttggaatatt tggcccataa atatccgcgt ctaaaatacc tactcttttt
    13081 cccattttag ccatggaaat tgctaaattt actgtagttg tagatttacc cacaccacct
    13141 tttccacttg aaaccatgat gaaatttttt acttgtggag cgatattttt tccacttctt
    13201 gaattacttt tttcttcagg aatttttgga gtaatgatat taagttcaat attttttaaa
    13261 gccaaactcg ataaagcttc aatagtattt ttacgaattt cattagctac ttcaggattt
    13321 gctgaaacga tttctatatc aatgaataca ccatcatctt gaattttaat atcttttaca
    13381 aagttaaaac tcactatatc cttttcaaaa ccaggatatt ttacagtttt taatttctct
    13441 aaaatttgtt ctttcatatt ttttccttgt cttttaaaaa aatcaatttt actaataaaa
    13501 tgataaaatt tagcttttta taagtgtata atatggtaac attataaaaa ccaacaatat
    13561 taaaaagagg aatgaaaaaa tgagtgaaat gagcctcatt atgttagcag ctggaaattc
    13621 tactcgtttt aatacaaagg taaaaaaaca atttttacga cttggaaatg accctctttg
    13681 gctttatgca acaaaaaatt taagctcttt ttatcctttt aaaaaaatag ttgttacctc
    13741 tagtaatatc acttatatga aaaaatttac caaaaactat gaattcatag aaggtggtga
    13801 taccagagca gaatccttaa aaaaagcctt agagctcata gatagcgaat ttgttatggt
    13861 aagtgatgta gcaagggtat tggtgagtaa aaatttgttt gatcgtttga ttgaaaattt
    13921 agataaagca gattgtatta cccctgcttt aaaagttgca gatacaacac tttttgacaa
    13981 tgaagccttg caaagagaaa aaatcaaact cattcaaacc ccgcaaattt ctaaaaccaa
    14041 attgcttaaa aaagccttgg atcaaaacct agaatttaca gatgatagca cagctatagc
    14101 tgcaatgggt ggaaaaattt ggtttgttga aggtgaagaa aatgcaagaa aactaacctt
    14161 taaagaagat cttaaaaaac ttgatttgcc tacacctagc tttgaaattt ttactggcaa
    14221 tggttttgat gtgcatgaat ttggagagaa tcgccctttg cttttagcag gagtgcaaat
    14281 tcatcctact atggggctta aagcacacag cgatggagat gttttagctc actctttaac
    14341 cgatgcgatt ttaggtgctg caggacttgg agatatagga gagctttatc ctgatactga
    14401 tatgaaattt aaaaatgcca actccatgga gcttttaaaa caagcttatg ataaagtcag
    14461 agaaataggt tttgaactca ttaatataga catttgcgtc atggcacaaa gccctaaact
    14521 taaagacttt aaacaagcta tgcaaagcaa tatagctcat actttagatt tagatgaatt
    14581 tagaatcaat gttaaagcca caacaacgga aaaattgggt tttattggaa gaaaagaagg
    14641 tatggcggtg cttagtagtg taaatttaaa atattttgat tggacaagat tatgaaagtt
    14701 ttaattattg aaaatgaaat ttatctagcg caaagcatta gcattaaact aagtgatgct
    14761 ggatatagct gtgaaattat taactcgttt gatgaataca atggtgaaaa atactatgac
    14821 attatactgc tttctacaaa tactaataat tttctaaaag ccgtaggtca gtttaaacat
    14881 agtattatta ttttgcttat ttcttatata agtacagata cagtttcaaa tcctttgaaa
    14941 ttaggtgcta gtgattatat tcaaaaaccc tttatgatag aagagctgat tagaaaaata
    15001 aagcattatc aggattttag aaaactttca atccttaata aagcttatca aagctatatc
    15061 aaatcaagat tagaaacaat caaaattcca gagtataatt ataaaaaatt aaaacttcca
    15121 ttgatattaa aatccaacaa gcaaagcagt gctgatgctt ttgtttttaa ttatgcaaat
    15181 gaatgtgaca ttactctttc ttttattgat ttaacatcta caaattcagt tgaaaaagtt
    15241 atgaaacttc ccacagaaaa caatctttta tttttgagta attttcaagc attaaaagca
    15301 gcagaaaagg aaaaactcct agattttata caaaaca
//
LOCUS       DAPOLW010000029        15303 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.029, whole genome shotgun sequence.
ACCESSION   DAPOLW010000029 DAPOLW010000000
VERSION     DAPOLW010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15303
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.029"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..64
                     /locus_tag="ROE18_000647"
     CDS             <1..64
                     /locus_tag="ROE18_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HDX3650847.1"
                     /translation="IPYKNKSFYLIKIIFKRTNQ"
     gene            61..1647
                     /gene="yidC"
                     /locus_tag="ROE18_000648"
     CDS             61..1647
                     /gene="yidC"
                     /locus_tag="ROE18_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HDX3650848.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVIYDYFFIPKQPLKIEQNIT
                     QKNQQNTSINNTPNIQNATTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLK
                     DRKYQNEKGEFINLVSKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQV
                     LKLTQNLSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALV
                     MDNKETIETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDANQNPI
                     VFAYSDNEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIG
                     NWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMME
                     LYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILP
                     ILMGATMFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLV
                     QQWVINKIFAKEHHKKTSGA"
     gene            1651..2469
                     /locus_tag="ROE18_000649"
     CDS             1651..2469
                     /locus_tag="ROE18_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HDX3650849.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFTSSKNHKPETHEPKQENKIEIKNEKNKSQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYDEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQSVIEK
                     IKIHGRGQTKPLDGVLIKIALEQLRAEFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            2462..3790
                     /gene="mnmE"
                     /locus_tag="ROE18_000650"
     CDS             2462..3790
                     /gene="mnmE"
                     /locus_tag="ROE18_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HDX3650850.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEENFKLGTHLLRIIDTAGIRESK
                     DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL
                     ENVFKNTQNKNFIKLSAQKDITLLKEELQNYLNSFDSEGIMVSSLDLINACKISSEAI
                     FRAKGLLEESSLEFFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK"
     gene            3801..5987
                     /gene="purL"
                     /locus_tag="ROE18_000651"
     CDS             3801..5987
                     /gene="purL"
                     /locus_tag="ROE18_000651"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HDX3650851.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGDIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDKTPMRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVMGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPTSEPKYLSEIKNYKFE
                     LKSSVQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGRLGASVIRIKENGASVA
                     MAIECNSRLNYVNPKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKASFEK
                     ENLSVYLLGESLGEFSGSMVMKIQDKKVSGSLKELDYKAELALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKMFAISSVGANLTSDFDDEKMIFDESASRAIIGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDSIELSKAELDKLYFESFKEQIQ"
     gene            5984..6754
                     /locus_tag="ROE18_000652"
     CDS             5984..6754
                     /locus_tag="ROE18_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family molecular chaperone"
                     /protein_id="HDX3650852.1"
                     /translation="MTLVLIILVVLVFYWYYKTWGKQDFLNSATRGAKGFAKGFARGV
                     MEERMDEFKRRMNYYVIALLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSTKKELSLDEAFAILELPNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEELKIGVEKFQKINEAYEKVKKHLER"
     gene            6757..8289
                     /gene="purH"
                     /locus_tag="ROE18_000653"
     CDS             6757..8289
                     /gene="purH"
                     /locus_tag="ROE18_000653"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HDX3650853.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLGFEILSTGGTFKLLKENGIKV
                     IEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQND
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFSANFKALKGEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAVF
                     EGKKRIKIFTQESPFLIRSFDKYDFKHIDGGFVYQNSDEVGEDELKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAKAKEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAMVEPGGSIRDDEVVKAADEYGMALYFTGVRHF
                     LH"
     gene            8388..9980
                     /locus_tag="ROE18_000654"
     CDS             8388..9980
                     /locus_tag="ROE18_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HDX3650854.1"
                     /translation="MFKTIGFKVSAAIFVVLLISFIVMQVILNLDFKNTANKMSRANL
                     DTVSTSVFQTMRMAMNLGDPEKIKEAIEDAKSIEGISDIKIYPSKDTIDLFEMKAPQI
                     SNDKRIIEQFSNPKIQALEENVNGVVHLRLIRPLIADESCVACHANANIGSVIGVMDI
                     SHSLEGVQKDISKTSQSYIVIFTIALIFTLCVVLLMLKVVVGKPVLELLNHAKELAQG
                     SGNLKARISVKGQDEIALACGYINQFIEKTHKAVSGASHNSKNVEKQSNLLNSNAISL
                     SDISSQSHKQIDQSFKLGANVGNELGELASLSNKANSANEKSFLLLEQMLKSLFNVAN
                     KVSTVSQNENELAKKVENMVNQAGNIQKATQMMDEIADKTNLLSLNAGIEAARAGAFG
                     RGFSVIAEDVRQLAQNSEEFLGNVAQITKELLQSINEVSAELKKNAQSVQALNDDTAL
                     LVDDANEVKLCNEDARALVTQCTEKIKISQENIQNLLSRMQENVEVSEKNEEISKILL
                     QVADELKIVCHNLESELNQFQI"
     gene            9990..10424
                     /locus_tag="ROE18_000655"
     CDS             9990..10424
                     /locus_tag="ROE18_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HDX3650855.1"
                     /translation="MKKMLQIALAATFFAGCASTSLTSSTSKGNNELVQNQLFKIEKI
                     IVNGKTFVPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADTLQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGTFKISNENGKLVLSNDEMKIFFK"
     gene            10523..11500
                     /locus_tag="ROE18_000656"
     CDS             10523..11500
                     /locus_tag="ROE18_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agamatine deiminase"
                     /protein_id="HDX3650856.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKVVS
                     EFQKVLLIAPKQSDFENFKDIKNVEFFKCDTNDTWIRDFGAIDIVENGRLKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNEN
                     RNSHLNKTQIDTKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLLELPIPKPLYYEERRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPNHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            11497..12384
                     /locus_tag="ROE18_000657"
     CDS             11497..12384
                     /locus_tag="ROE18_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HDX3650857.1"
                     /translation="MSLQKKATLVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTAFSAFKIIKKALAFLMDEALPKEQVDKICTLI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            12381..13253
                     /locus_tag="ROE18_000658"
     CDS             12381..13253
                     /locus_tag="ROE18_000658"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HDX3650858.1"
                     /translation="MKIALIQQKFHLNKEQTIKKTCEFIEEASKQGAELVCLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLIASLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWFDKDKDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSRVEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFTDLTKRFID"
     gene            complement(13265..14611)
                     /locus_tag="ROE18_000659"
     CDS             complement(13265..14611)
                     /locus_tag="ROE18_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDX3650859.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHRENLEQKNENQHYVKLEY
                     EQNVNILPQFAYDINFDAKRYKKYFFNPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFF
                     NKQIIPLSWFKNAINNANIQEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIP
                     FDYASDGILNTGAPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSNDRAKIYENLN
                     FITPLKEKFAIYSEDGKFLFESRIGAIYPYYKEDKNYFYGKIGSKKYKISKKDVSKFP
                     LQFNDKNLKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPRNSAAQKNSFN
                     HFDISTLSNSQKKDFLNRFGKAYLSLLYLPGHIMLYAGQITDNNIAIHNIWGLRKDAT
                     QRLLISSSVITSLEIGKNEILEDNLLLSRLKEISFINLNEQEKEQIKSYLENIQNK"
     gene            14660..>15303
                     /gene="pif1"
                     /locus_tag="ROE18_000660"
     CDS             14660..>15303
                     /gene="pif1"
                     /locus_tag="ROE18_000660"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HDX3650860.1"
                     /translation="MFDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGYCDDMMKLSVLDRNQKQKEKLTKLKELLKTIELII
                     IDEISMVSANVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYAFSS
                     FFWQDLNFKNIKLSQPKRTQNMEFYNHLSLIRQGFLDEKILSFFESLRIDYKEL"
BASE COUNT         5480 a         1882 c         2880 g         5061 t
ORIGIN      
        1 tataccttat aaaaataaaa gtttttatct tataaaaatc atctttaaaa ggacaaatca
       61 gtgaataatt caaataatat ttttcagcaa aagcgtatac ttttagctgt tgtgatttct
      121 tttttatttt ttgttattta tgattatttt ttcattccaa agcaaccttt aaaaatagaa
      181 caaaacatta cacaaaaaaa tcaacaaaac acaagcataa ataacactcc taatatacaa
      241 aatgccacca caaatactcc aagtgcggct ttagtttcgc aagatagtgt gatatctaag
      301 gttcaaagca agcattttga agcacaaatt gactcttttg gtagaatttc tgctttttat
      361 ttaaaagata gaaaatacca aaatgagaaa ggagaattta taaatcttgt tagcaaggaa
      421 aatagtcctt atcctttaga aatgcgtttt agtgatccaa gtattaactc agaggctttt
      481 aaaattcctt atgttgctaa cgctagcaat ctttttgttg atgaaaatgg aagtcaagtt
      541 ttaaaactca ctcaaaatct ttctggattg aaaatcgaaa aagatattac tttttatcca
      601 aaaggaaatt atgagataga agttaaactc agcaagaatg caaattattt tataagtcca
      661 ggatatcgtc caaatattgc cgtagatagt tatacagttc atggtgcttt ggtaatggat
      721 aataaagaaa ccatcgaaac ttataaagat ggagatgtag aaaaggatga aagtgctaat
      781 aatgtcgtaa tgacttcggc ttttgataga tactatgcaa ctttctttta taattttgat
      841 aaacctttaa atgtggcaat cagcaaggat gctaatcaaa accctatagt ttttgcttat
      901 agtgataatg aatttaaagc agggggctat ataggctcta aagaacatgt gattttaaga
      961 agtatagatc cacgccttga agcagttgtt gaatatggtt ggtttacttt tattgctaag
     1021 cctatgtttg agtttttgaa tttcttgcat cagtatatag gaaattgggg ttgggctatc
     1081 gttgtgatga ctttaattgt gcgtattatt ttattcccgc taacttataa gtctatgatt
     1141 tctatgaata aacttaaaga tcttgctcct aaaatgaaag atattagaga gcgttataaa
     1201 ggcgatccac aaaaaatgaa tatgcacatg atggagcttt ataaaaaaca tggtgcaaat
     1261 cctatgagtg gttgtttgcc tatactttta caaattccta ttttctttgc tatttatcgc
     1321 gttttgctta atgctattga gctaaaagca gctccttggg cgttttggat acatgattta
     1381 tcggtaatgg atccttattt tattttgcct attttaatgg gtgcaacgat gtttttacaa
     1441 cagcttatta cacctatgac tatacaagat cctatgcaag ctaagattat gaaattttta
     1501 ccagtgattt ttactttttt ctttatcact ttcccagcag gacttacgct ttattggttt
     1561 gtaaataacc tttgttcttt ggttcaacaa tgggttatca ataaaatatt tgctaaagaa
     1621 catcacaaaa aaacaagcgg agcatgaaaa atgaaaatcg aagccattga tcttcaaagt
     1681 gccttaacag aagcttcaag aagtttagaa tgttctgtga tggacttaga atatgagatt
     1741 attcagcatc caagaaaagg tttttttgga tttggaagaa aaaaggcaat tatagaggct
     1801 aaagcaaaaa aaaggatttt gaaaaaaaat cctaaaaaag aatttacaag ttcaaaaaat
     1861 cacaaaccag aaacacatga gccaaaacaa gaaaacaaga ttgaaataaa aaatgaaaaa
     1921 aataaaagtc aaaaagaaaa atacacagta aaaagtgatg aaatttttga tagttttcat
     1981 cgagaaagca aaggagtgcg taatactcag gatattttag atgagattcg tattcagctt
     2041 gtaaaacttt tagaaagctc ccagtttaaa atagagctta gtgaacttag aatgtatgat
     2101 gaagattgtg ttttgattcg attggatggg gaagatgctg ctttgatgat aggcaaagaa
     2161 gcacatcgtt acaaggctat ttcttatctt ttgcataatt ggatcaattt aaaatataat
     2221 cttttagtgc gccttgagat cgctcaattt ttagaaaatc aaattcaagg tatgcagctt
     2281 tatttacaaa gcgtgattga aaaaattaaa attcatggac gcggacaaac caaaccttta
     2341 gatggggttt tgataaaaat cgctttagag cagttaagag ctgaatttcc agataagtat
     2401 gtaggaatta agcaaaataa tgatcaaaga tttgttgtaa taaacgactt tttcaaaaaa
     2461 gatgagtgat actatagcgg ctattgccac agctcatggt gtgggttcga tttctattgt
     2521 aagattaagc ggtgaaaggg ctttagaatt tgccttaaag cttagccaca aaaccaaact
     2581 taccccgcgc catgctactt ttacaaaact ttttaatcaa aataatgaaa ttatcgatga
     2641 agctataatg atatatttta aagcccctta tagttttaca ggggaagata tagtagagtt
     2701 tcaaactcat ggaggattta gtgtgagtga agttttactc gaagaacttg tgagtttagg
     2761 agcaagactt gctttagcag gggaatttag caaaagagcg tgtttaaatg gcaaaatgac
     2821 tcctttaaaa gctttaaata tacaagatct catactttca aaatctgcac ttgcagctaa
     2881 aattatagca cgcaacatgc aaggaaactt aggagaactt ttagaaaaaa ttcgcacaga
     2941 tttggttaaa accttggctt ttgtagaaac tagcattgat tatgctgatg atgatttacc
     3001 ttctgattta ttagagcaaa tttctactat gtgtgaagaa aattctaaaa ttttaaaaga
     3061 aatttatacg ctttctcaaa gcaaaaaagg actcatagaa ggttttaaaa tcgctattgt
     3121 aggtaagcca aatgtaggca aatcttcgct tttaaatgcc ttgctttctt atgaaagagc
     3181 tattgtttca gatatagcag gcaccactcg tgatactata gaagagaact ttaaattagg
     3241 aacgcattta ttacgcatta tagatacagc gggtattagg gaaagtaaag atgttataga
     3301 acaaatcggc gtagctttaa gtaaaaaaag tttagaagat gcagatatta ttttggcagt
     3361 ctttgatgct tcaagagtgc aagataaaga agatgagaaa atttttgact tattagcaaa
     3421 tactgataaa aaaatctttt ggattttaaa taaaagtgat ttagaaaatg ttttcaaaaa
     3481 tactcaaaat aaaaatttta tcaagcttag tgctcaaaaa gacattactt tgttaaaaga
     3541 agaattgcaa aattatctta attcttttga tagcgaaggt attatggtaa gttctttaga
     3601 tcttattaat gcttgtaaaa tttcaagtga agcgattttt agagctaagg ggcttttaga
     3661 ggaaagttct ttagagtttt ttgcttttga gcttaattta gctattaatg aacttgcaag
     3721 atttaccaaa gattttcaaa gagatgaaat tttagacgaa atgtttggta atttttgttt
     3781 aggaaaatga aaggatagaa atggataaag aaaccataaa agcacataaa atcagcgatg
     3841 aagaatatgc acaaatttta gaaattttag gacgtgagcc aaatttatta gaacttgggg
     3901 ttatttctgc gatgtggagt gagcattgct cttataaatc cagtaaaaaa tatcttaatg
     3961 gttttccaac taaagcacct tgggtgattc aaggtccagg tgaaaacgca ggggttattg
     4021 atatcgggca aggtatggca gcggttttta aagtggaaag tcacaatcac cctagtttta
     4081 tcgaaccttt tgcaggtgcg gctacaggag tagggggaat tttgcgtgat gtttttacta
     4141 tgggtgcaag agtggttgcg gggctaaatt ctttaaaatt tggcgatatt catgatgaaa
     4201 aatgcggcaa acatcaaaaa taccttgtta aaggcgtggt aaatggaatt tctcattatg
     4261 gaaattgcat gggtgtgcca actataggcg gagaatgtgc ttttgatgag tgttttaatg
     4321 gaaatatctt agttaatgcc tttgctttag gggtttgtaa aagtgaagat atcttttatg
     4381 ctaaggctga aggtgtagga aatcctgtga tttatgtggg ttcaaaaaca gggcgtgatg
     4441 gacttggtgg agcggttatg gcaagtgata gcttcaatga agaaagcaaa tctttgcgtc
     4501 ctacagtgca aattggcgat cctttcagtg aaaaacttct tatggaggct tgtttagagc
     4561 tttttaaaac cgattatatt gtgggtattc aagatatggg tgctgcaggg cttacttcaa
     4621 gttcttttga aatggcagga agaagtggca gtggcatgaa actttactta gataaaactc
     4681 ctatgcgtga aagcggtatg actccttatg agttaatgct tagcgaatct caagaaagaa
     4741 tgcttatttg tgcgaaaaaa ggctatgaag ataaggttat agagattttc aaaaaatggg
     4801 atttagatgc tgtggttatg ggtgaagtta ccaatacagg aaaaatggag cttttttggc
     4861 atgatgagct tgtaggactt attcctatcg agcctttaag tgaaaaagcg ccgattttaa
     4921 gtcgccctac aagtgaacca aaatatttaa gtgaaattaa aaattataaa tttgagttaa
     4981 aatcaagcgt tcaagagctt tttatacaaa tgcttcaaaa tgaaaatatt aataataaag
     5041 cttttattta tgatcaattt gattcaagtg tgcaaaccaa taccataaaa gctgatggaa
     5101 gattaggtgc tagtgttatt cgtatcaaag aaaatggtgc aagtgtggct atggctatag
     5161 aatgtaattc acgcttaaat tatgtaaatc ctaaaatagg agcagcttta gcagtagctt
     5221 ctgcaggaag aaaagttgct tgtacggggg ctaaaccttt ggcaataagc gattgtttaa
     5281 attatggaaa tccgcaaaat cctgaagtga tgtggcaatt cgcacaaggt tgcgaaggta
     5341 ttaaagaagc ttgtaaagag ttaaataccc cagtagtaag cggcaatgtt tcgctttata
     5401 atgaaactga aggcgtaagt atttatccaa gtcctactat agtaagtgta ggggttttag
     5461 aagatgcaaa taaaacccta aaagctagtt ttgaaaaaga aaatttaagc gtttatcttt
     5521 tgggtgaaag tttaggagaa tttagtggat ctatggtaat gaaaatccaa gataaaaaag
     5581 tatcaggaag tcttaaagag cttgattata aagctgaact tgcactttgg gatttgcttt
     5641 ataaagccaa tcaaaattct ttacttgagt gtgccaatag cgtaggaata gggggtattg
     5701 ctatgacttt ggcaaaaatg tttgctattt ctagtgtggg tgcaaattta acaagtgatt
     5761 ttgatgatga aaaaatgatt tttgatgaga gtgcaagtcg tgctataata gggcttagta
     5821 aagaaaatga agaagctttt ttaaatttag ctaaagaatt tggagtaaaa gcttataaat
     5881 taggtgtgag tacaagccaa aaacatttta aacttgatag cattgagtta agcaaggctg
     5941 aacttgataa gctttatttt gaaagtttta aagagcaaat ccaatgactt tagttttaat
     6001 tatactcgtt gttttggtgt tttactggta ttataaaact tggggaaaac aggatttttt
     6061 aaactcagct acaagaggag ccaaaggctt tgctaagggt tttgctcgtg gggttatgga
     6121 agaaagaatg gatgagttta aaaggcgtat gaattactat gttatcgcac ttttggcaaa
     6181 aattgcaaaa agcgatggca gggtaagtga aaatgaagct gaaatgatca aagatctttt
     6241 agatgcaaat gccaaagatg aaaaagaaag agctttttta aaagcaagtt ttaacgaaca
     6301 taaagaaaat ttaagcgatg ctttttatgt ggcaaaagat tttttaaaag aagtgccttt
     6361 gcctaaaaat gagcgtttta atgtcttgcg tgtgcttgtt tttatggctt taatcgatgc
     6421 agattttaat gctaaaaagc gtgaaatttt agagcaaatc gctaaagcct ttgatatagc
     6481 aaaaagcgaa ctagacgctt ttatagcaag tctttcaaat ttaaaaagta ctaaaaaaga
     6541 attaagtctt gatgaagctt ttgctatttt agaacttcca aataatgcgg atttaaatgc
     6601 ggtaaaaaaa caataccgca atttggcaaa aaaataccat cctgatattt taaatgcaaa
     6661 caatgttagc gaagaagagc ttaaaatcgg cgtagagaaa tttcaaaaaa tcaacgaagc
     6721 ttatgaaaaa gttaaaaaac atttagaaag gtaaaaatga gagcattact tagtgtgagt
     6781 gataaagaag gcatagtaga atttggcaaa gagcttgaaa atttaggttt tgagattctt
     6841 tcaactgggg ggacttttaa gcttttaaaa gaaaatggaa taaaagttat agaagtgagt
     6901 gattttacaa agagtcctga gctttttgaa gggcgtgtga agactttgca ccctaagatt
     6961 cacggtggga ttttgcataa aagaagcgat gaaaatcata tcaaacaagc aaaagaaaat
     7021 gaaattttag gcattgatct agtttgtgta aatttatatc cttttaaaaa aactaccatt
     7081 atgagcgatg attttgatga aattatagaa aatatcgaca taggcggacc tgcgatgata
     7141 agaagtgcag caaagaacta taaagatgtg atggtgcttt gcgatccact tgattatgaa
     7201 aaagtgattg agactttaaa aaaaggtcaa aatgatgaga attttcgttt aaatttgatg
     7261 ataaaagctt atgagcatac agcaaattac gatgcttata ttgcaaatta tatgaatgaa
     7321 cgctttaacg gaggttttgg agcgagtaaa tttatagtag gacaaaaagt atttgataca
     7381 aaatatggag aaaatccaca tcaaaaaggg gctttatacg agtttgatgc cttttttagc
     7441 gcaaatttca aagcccttaa aggcgaagca agttttaaca atctaaccga tattaacgca
     7501 gctttaaatt tagctagtag tttcgataaa gctccagcta ttgctatagt aaaacatgga
     7561 aatccttgcg gttttgctat aaaagaaaat ttagtacaaa gctatataca tgctttaaaa
     7621 tgcgatagcg tcagtgctta tggaggagtg gttgcaatca atggaactct tgatgaggct
     7681 ttagcaaata aaatcaatga aatttatgta gaagtaatca ttgcagccaa tgtagatgaa
     7741 aaagctttag ccgtgtttga aggtaaaaaa cgcattaaaa ttttcactca agaaagtccg
     7801 tttttaatcc gcagttttga taaatatgat tttaaacata ttgatggggg ttttgtgtat
     7861 caaaacagtg atgaagtggg cgaagatgag cttaaaaatg caaagcttat gagtcaaaga
     7921 gaggcaagta aggaagaatt aaaagatctt gaaatcgcta tgaaaatagc agcgtttacc
     7981 aaatcaaaca atgttgttta tgtaaaaaat ggcgctatgg tggctatagg tatgggtatg
     8041 acaagtagaa tcgatgcagc aaaggcagca atcgctaaag ctaaagaaat gggacttgat
     8101 ttgcaaggtt gcgttttagc aagtgaagcc ttttttcctt ttagagatag catagatgaa
     8161 gcaagtaaag taggggttaa agctatggta gaaccaggcg gaagtataag agatgatgaa
     8221 gtggtaaagg cggctgatga gtatggtatg gcgctttatt ttacaggagt aagacatttc
     8281 ttacattaag tttaatggaa tgttatgttt tttacacata attcaataaa aattaaataa
     8341 attatgtgta aaatatttcc gaaaaatttt atttttagga aactatgatg tttaaaacta
     8401 taggatttaa ggtttctgct gcaatttttg tggtgttgct tataagtttt attgtaatgc
     8461 aagtgatttt aaatttggat tttaaaaata ctgccaataa aatgagcagg gcaaatttag
     8521 ataccgtaag tacttctgtt tttcaaacaa tgagaatggc tatgaattta ggagatcctg
     8581 aaaaaattaa agaagccatt gaagatgcaa aaagtataga gggtattagt gatattaaaa
     8641 tttatccttc aaaagatact atagatcttt ttgagatgaa agcccctcaa atttcaaatg
     8701 ataagcgtat tatagaacaa ttttcaaatc ctaaaattca agctttagaa gaaaatgtaa
     8761 atggtgttgt gcatttaaga ttgatacgcc ctttgattgc agatgaaagt tgtgttgctt
     8821 gtcatgcaaa tgctaatata gggagtgtga ttggggttat ggatatatca cattctttag
     8881 aaggtgttca aaaagatata agcaaaacca gtcaatctta tattgtaata tttactattg
     8941 ctttgatttt taccctttgt gtggttcttt taatgcttaa agttgttgtt ggaaagcctg
     9001 ttttagagct tttaaatcat gctaaagaat tagctcaagg aagtggcaat ttaaaagctc
     9061 gtatttcagt taaaggtcaa gatgaaattg ctttagcttg tggatatatc aatcaattta
     9121 tcgaaaaaac tcataaggca gttagcggtg caagtcataa ttcaaaaaat gtagaaaaac
     9181 aaagcaatct tttaaattca aatgctattt ctttaagtga tatcagttca caaagtcata
     9241 agcaaataga tcaaagtttt aaacttggtg caaatgttgg caatgaactt ggagaacttg
     9301 ctagtttgtc aaataaagca aatagtgcca atgaaaaatc ctttttatta ttagaacaaa
     9361 tgcttaaatc tttgtttaat gttgctaata aagtatcaac agtatctcaa aatgaaaatg
     9421 aattggctaa aaaagttgaa aacatggtca atcaagcagg taatatacaa aaagcaactc
     9481 aaatgatgga tgagatcgca gataaaacca atttactatc cctaaatgct ggcatagaag
     9541 cagctagggc tggtgcattt ggacgaggtt tttctgtaat tgctgaggat gttaggcagt
     9601 tggctcagaa cagtgaagaa tttttgggaa atgtagctca aattacaaaa gagcttttgc
     9661 aaagtattaa tgaggttagc gcagaattaa agaaaaatgc tcaaagtgta caagctttaa
     9721 atgatgacac cgctttattg gttgatgatg ctaatgaggt taaattatgc aacgaagatg
     9781 ctagggcttt ggtaactcaa tgtactgaaa aaataaaaat ttcccaagag aatatacaaa
     9841 atttactttc tcgtatgcaa gaaaatgttg aagtaagtga aaagaatgaa gaaatttcta
     9901 aaattctgct tcaagttgca gatgagttaa aaatagtgtg tcataatctt gaaagcgaac
     9961 ttaaccaatt tcaaatttaa aggaataaaa tgaaaaaaat gcttcaaatt gctttagctg
    10021 caactttttt tgcgggttgt gctagtactt ctcttacttc atctacttct aaaggtaata
    10081 atgaacttgt gcaaaatcag cttttcaaaa tagaaaaaat tatagtaaat ggcaaaactt
    10141 ttgttccaaa aaacgcagag gaaagtccaa atatcagttt tgaaaataat aaattttatg
    10201 gttattcagg atgcaatcgt ttttttggtt cttatcaaac taaggcggat actttacaaa
    10261 tcgaaggtga tcgcgtagct tcaactcaaa tgctttgtca cccaatggat gtaatggatt
    10321 ttgaaaattc tttcctttca aatttcaaag gaacttttaa aatttcaaat gaaaatggaa
    10381 aacttgtttt aagcaatgat gaaatgaaaa tcttttttaa ataatgccct aaagcctcga
    10441 aatatcgagg caatcttctt aaatttgaca aaagtctaaa aaatgataca attataattt
    10501 tattatcaaa aaaggtagtt aaatgataaa atcaattcct gaatggagtg agcaagaata
    10561 cctcatgctt tctttacccc atgaaaaaag cgattggaat ccctacttag aggaaatttt
    10621 gcaaagttat aaagaatttg taaaagtggt aagtgaattt caaaaagttt tacttatagc
    10681 tcctaaacag agtgattttg aaaattttaa agatataaaa aatgtagagt tttttaaatg
    10741 tgataccaat gatacttgga tacgcgattt tggagctata gatatagtag aaaatggtcg
    10801 tttaaaagct cttgatttta cttttaatgc ttggggaaat aaatttcaaa gcgagcttga
    10861 taatgctgta aattctaagc tttttaaaga aaaatttaaa gaggagctta aaaaggttga
    10921 ttttatttta gaaggaggaa gtattgactt taatggagag ggtgtgatgc ttacaagctc
    10981 tcattgtctt ttaaatgaaa atagaaattc tcatctaaac aaaactcaaa ttgatacaaa
    11041 attaaaagaa atttttggtt taaagcaaat tatttggcta gaaaatggtt tcataaaagg
    11101 tgatgatacg gatcatcata tcgatacctt agcaagattt atagataaaa ataccatagc
    11161 gcattgtatt tgtgaagatg aagaggatga gcattatttg cctttgcaaa aaatgaaaga
    11221 agagcttaaa aaaacaggct ttgatttatt agaacttcct atacctaagc ctttatacta
    11281 tgaagaaaga agattaggag cgacttatgc gaattttgtt tttataaata atgctttaat
    11341 tgtgcctttt tacaaggata aaaatgatga aatcatagct aaaagacttt ctaaagcttt
    11401 acctaatcat aaaattatag gagtagatgc aagagtgttt ttacgacaaa acggttcttt
    11461 gcattgttct tgtcaaaatc gtttcaaagg tttaagatga gtttgcaaaa aaaagcaact
    11521 cttgtagcaa gtttatgtgc tattgtttta gccttggtta aatttatagt aggcttaaca
    11581 agtggttctg ttgcagtact ttcaagtgcg attgattctt taatggattt tgctatttct
    11641 gcttttaatt ttttggctct taaaaaaagc tcacaaaagg cgaatgaaaa ttataatttt
    11701 ggtttttcta aaattgaagc tttaatgggt ttgttagaag gtgtttttat agttggcgtg
    11761 gggattttta ttttttatga gagtatttta aagatttatt ataaagaaga aattaaagat
    11821 ttaaattcaa gcatctatgt gatgattttt gctttaatta tgactttttt tcttgtactt
    11881 tttttaaatt atgtagctaa aaaaaccaaa agtttgatta tagaaagtga tgctttgcat
    11941 tacaaaacag attgcttaac caatgcttgt actttagggg ctttggtttt gatttatttt
    12001 acaaatttac atattattga tgctattttt gggatagtga tcagtcttta tacggcattt
    12061 tctgctttta aaatcattaa aaaagcttta gcttttttaa tggatgaggc tttacctaag
    12121 gaacaagtgg ataaaatttg tactttgatt tctaataatc ctgaaataat ttcctatcat
    12181 gaattaaaga cgcgtaaaac tccaagttgt aattatttaa gcgtgcattt ggttttttgc
    12241 cctataattt cgcttttaaa tgcgcataaa atttcagatg aaatagaaga aggtgtgcgt
    12301 aagatgtttg aaaatgaaaa atgggatata caaattcatt tagatcctta tgatgatgca
    12361 gaacaagaaa ggcaaagaca atgaaaatcg ctttaataca acaaaaattt catttaaata
    12421 aagaacaaac tataaaaaaa acttgcgaat ttatagaaga agcctctaaa caaggagctg
    12481 agcttgtttg cttaggagaa cttcatcaaa gtgagtattt ttgtcaaagt gaaaatgtgg
    12541 atttttttga ctatgctaat gattatgaaa aagatgtgaa attttgggca aatatagcta
    12601 gaaaaaatca aatagtgctt attgcttcat tgtttgaaaa acgaagtgcc ggactttatc
    12661 ataatactgc agtggttttt gaaaaagatg gttctatagc aggcaaatat cgcaaaatgc
    12721 acatacccga tgatccttgt ttttatgaaa aattttattt tactcctgga gatttgggtt
    12781 ttgaacctat aaatacaagt ttaggtaagc ttggagtgct tatttgttgg gatcagtggt
    12841 atcctgaagc agcaagaatt atggctttaa aaggagctga gattcttatt tatcccacgg
    12901 caattggttg gtttgataag gataaagatg aagaaaaaca aagacagctc aatgcttggc
    12961 ttggcgtaca aaaaggacat gctatagcta atggtttata tgtagtagct atcaatagag
    13021 taggttttga aaaagatgta agcagggtag aagagggcat tagattttgg ggaaattctt
    13081 ttgtttttgg ccctcaaggt gaagaacttt gtcttttaga ttctcaaaac gaatgtgtaa
    13141 aaatcataga aatagataaa aaaagaagtg aaaatgtgcg tcgttggtgg ccttttttgc
    13201 gagatagacg catagaatat tttacagatt taactaaaag atttattgat taaatcaata
    13261 aatcttattt gttttgtata ttttcaagat agctttttat ttgctctttt tcttgttcgt
    13321 ttaaatttat aaaacttatt tctttaagtc ttgataaaag caaattatct tctaaaattt
    13381 cattttttcc tatttctaaa gaagtgatga cgctagaact tatgagaagt ctttgggttg
    13441 catcttttct taagccccat atattatgta tggcaatatt attatctgta atttgccctg
    13501 cataaagcat aatatgtcca ggtaaataaa gtaaactaag ataagctttc ccaaagcggt
    13561 ttaaaaaatc ttttttttga gaattactaa gagtgcttat atcaaaatga ttaaaagaat
    13621 ttttttgtgc agctgaattt cttggtagat aaagtccaaa agctgaaaag atatcacgag
    13681 ttagtaaaga acaatctctt tcaaaattat aaccgcccca gccataaggc aaatttaaaa
    13741 cttgtgaaag ttgatttttt aaatttttat cattgaattg taaaggaaat ttagatacat
    13801 cttttttaga aattttatat tttttagaac ctatttttcc ataaaaatag tttttatctt
    13861 ctttgtagta aggatagata gcaccaattc tactttcaaa taaaaattta ccatcctcgc
    13921 tatagatagc aaatttttct tttagtggtg tgataaagtt gagattttca tagattttcg
    13981 ctctatcgtt tgagaaaaat tccaaatttt tactttcaac aaatccaaat ccagcttcac
    14041 ctaaaacaaa agcataacgc ttatctttac taaaatgtga aattaagaca ggggctccag
    14101 tatttaaaat gccatcgctt gcatagtcaa aaggaattcc ttcattttca aaaaaaggat
    14161 tttttaagat agctctttgg gttggaagat ttttaatgat tgtattttgg ataattaaag
    14221 ctttttgatt aagtttaccg aattcttgga tatttgcgtt atttatagcg tttttaaacc
    14281 atgaaagtgg aataatttgt ttattgaaaa aataataagt attttttgaa tttaaatata
    14341 aaggaaagga ccaaaaaata ttttgtcctt tgtaattttt aaatgaatca tgccaagggt
    14401 taaagaaata ttttttatat cgttttgcat caaaattaat atcgtaagca aattgtggca
    14461 aaatgtttac attttgttcg tattcaagtt ttacataatg ttgattttca tttttttgtt
    14521 ctaaattttc acgatgaagt gaagttaaat tttttgttga acaagctgtt aaaaatagca
    14581 ctataaaagt aaaatataaa caagatttca taatcaacct tttagaaaaa atagttataa
    14641 ttaaagccaa ggaaatataa tgtttgataa actagaaaaa attttagctt atgataatgt
    14701 ttttttaagt ggtggtgctg gagttggtaa aagctttttg acaaatgagc ttatcaaatc
    14761 ttatagaaaa caaaaaaaat tagccatagc tcttggttct agtgctctat cggcgtttaa
    14821 tataggcggt gttactttac acagcttttt ttgtttaggg tattgtgatg atatgatgaa
    14881 attaagtgta ttggatcgca atcaaaaaca aaaagaaaaa ttaacaaaac ttaaagagct
    14941 tttaaaaacg attgagctta ttattatcga tgaaatttcc atggttagtg caaatgtttt
    15001 tgaaatgata ggctttagac ttaaaaattc tcaatttaat ggaaaaattt tagttgttgg
    15061 agattttttt caactgcctc cagtaattaa agaaaaaaaa gaaactttat ttaaccattc
    15121 ttattatgct ttttcttcat ttttttggca agatttaaat tttaagaata ttaaactttc
    15181 tcaacctaaa agaacgcaaa atatggaatt ttataaccat ttatctttga ttagacaagg
    15241 ttttttagat gaaaaaattt taagcttttt tgaatctttg cgaattgatt ataaagaatt
    15301 aga
//
LOCUS       DAPOLW010000030        14488 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.030, whole genome shotgun sequence.
ACCESSION   DAPOLW010000030 DAPOLW010000000
VERSION     DAPOLW010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14488)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14488)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14488
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.030"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..289
                     /locus_tag="ROE18_000661"
     CDS             <1..289
                     /locus_tag="ROE18_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDX3650861.1"
                     /translation="HLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDID
                     LIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF"
     gene            complement(286..1017)
                     /locus_tag="ROE18_000662"
     CDS             complement(286..1017)
                     /locus_tag="ROE18_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HDX3650862.1"
                     /translation="MKPIIIFFSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKM
                     NEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAE
                     YKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHK
                     IKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKG
                     YYINLITKIIKRYNLEKYDTNSNNT"
     gene            complement(992..1741)
                     /locus_tag="ROE18_000663"
     CDS             complement(992..1741)
                     /locus_tag="ROE18_000663"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HDX3650863.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEEVGFAYKNEELFFEGKVKYCFEANYNFF"
     gene            complement(1738..2343)
                     /locus_tag="ROE18_000664"
     CDS             complement(1738..2343)
                     /locus_tag="ROE18_000664"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HDX3650864.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLDFKSISADKIAHKILDENA
                     LELEKIFSPFSLKNLLTKEKKIDRKILGKIVFNNKEAKKILENFTHPKIRAKILEQIQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLD
                     SQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM"
     gene            2404..3393
                     /locus_tag="ROE18_000665"
     CDS             2404..3393
                     /locus_tag="ROE18_000665"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HDX3650865.1"
                     /translation="MKISYEDAGVSIDNGNTFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALSSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDIL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE"
     gene            complement(3414..4612)
                     /gene="dcuC"
                     /locus_tag="ROE18_000666"
                     /pseudo
     CDS             complement(3414..4612)
                     /gene="dcuC"
                     /locus_tag="ROE18_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856491.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            complement(4686..4868)
                     /locus_tag="ROE18_000667"
     CDS             complement(4686..4868)
                     /locus_tag="ROE18_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650866.1"
                     /translation="MPIFMICSTLLAVIVVAYYILKKYNPIFVFFLSGIILLIFAFYI
                     TGTPIPKTPSREYTSF"
     gene            5076..8039
                     /gene="cas9"
                     /locus_tag="ROE18_000668"
     CDS             5076..8039
                     /gene="cas9"
                     /locus_tag="ROE18_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344900.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HDX3650867.1"
                     /translation="MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESL
                     ALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPY
                     ELRFRALNELLSKQDFARVILHIAKRRGYDDIKNNGDEEKSEILKAIKQNEEKLVNYQ
                     SVGEYLYKEYFQKFKENSKEFINVRNKKESYERCIAQSFLKDELKLIFQKQREFGFSF
                     SKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLN
                     NLKNTEGILYTKDDLNTLLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKK
                     YKEFIKALGEHNLSQDNLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKD
                     HLNISFKALKLITPLMLEGKKYDEAYNELNLKVAINEDKKDFLPAFNETYYKDEVTNP
                     VVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDA
                     ELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRS
                     FDDSYMNKVLVFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNY
                     KDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAK
                     SGMLTSALRHTWGFSAKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELY
                     AKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEF
                     YQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFAL
                     KVLPNKAVVQGKDKKSGLIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPELVYFNA
                     FTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALG
                     EVTKAEFRQREDFKK"
     gene            8036..8926
                     /gene="cas1"
                     /locus_tag="ROE18_000669"
     CDS             8036..8926
                     /gene="cas1"
                     /locus_tag="ROE18_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HDX3650868.1"
                     /translation="MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQVSLSSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSA
                     QKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            8919..9350
                     /gene="cas2"
                     /locus_tag="ROE18_000670"
     CDS             8919..9350
                     /gene="cas2"
                     /locus_tag="ROE18_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HDX3650869.1"
                     /translation="MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFS
                     VYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNE
                     TNVTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF"
     gene            complement(9782..10972)
                     /locus_tag="ROE18_000671"
     CDS             complement(9782..10972)
                     /locus_tag="ROE18_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDX3650870.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDI
                     IFMP"
     gene            complement(10976..11422)
                     /locus_tag="ROE18_000672"
     CDS             complement(10976..11422)
                     /locus_tag="ROE18_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HDX3650871.1"
                     /translation="MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGG
                     IEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            complement(11423..11644)
                     /locus_tag="ROE18_000673"
     CDS             complement(11423..11644)
                     /locus_tag="ROE18_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HDX3650872.1"
                     /translation="MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFDENTKLKDGDKIALLPPVCGG"
     gene            complement(11646..13187)
                     /gene="cueO"
                     /locus_tag="ROE18_000674"
     CDS             complement(11646..13187)
                     /gene="cueO"
                     /locus_tag="ROE18_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HDX3650873.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     EERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDK
                     MMVKEESNTLFLASISLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGK
                     SENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            13311..14459
                     /gene="nspC"
                     /locus_tag="ROE18_000675"
     CDS             13311..14459
                     /gene="nspC"
                     /locus_tag="ROE18_000675"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HDX3650874.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTI
                     EGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN"
BASE COUNT         5049 a         2112 c         2344 g         4983 t
ORIGIN      
        1 acatttattt gaaaatttag ttttaagcga gttgtttaaa tttaaagaag aattttttta
       61 taacaaatac tttaactttt atagccaaat atctaaaatt gcttatattt caagtccaac
      121 tttagatatt gatttgatca agctacgtgc taagaaaatt ttaccaaagg ctttagaact
      181 tggaattttt catgtgattt ttatcactct ttcaagcgag gataattttt ttgaacaagg
      241 ggttaaattt gaagtcatat cttttgataa attttcactt ggattttagg tgttgtttga
      301 gtttgtatcg tatttttcaa ggttgtatcg tttgatgatt tttgtaataa gattgatata
      361 atatcccttg cgttcagaat aagaatctaa agttttaata gcctctagcc ctgttatctc
      421 tttgccttcg ctttcaaatt tagctcttgc atcgcgaaac ttttcataag caaaatgacg
      481 atttaaattt aaaacataag agtcaacact atcttgcaga ctatcaaaaa ttttaatttt
      541 gtgtttttta tctggatgtc ttaaatcagg aattaaacct ttctcacccc aagtccattc
      601 tccaaaaaga ttgtttgctt ctcttgcgaa gcgactggta cctgtagcac tttcaactaa
      661 agcttgggct atacccatgg attttggaat tttttgaata cgttttttat attctgcaaa
      721 atcataaaga ttttcaatgc gatatttgtt ttttatcgtg ataagttttt caagatttat
      781 ttggtttgaa gtcctaaagc ctgttttgta agcatcttta aaaaaggctt cgataaaagc
      841 tctttcttgt tcaatttttt taaagctttg atcaaacatt tcattcattt ttataaaaaa
      901 aatttgtctt ttttgatcta tatcaagttt gtaatattct tctccaaatc cactctttag
      961 atcatcagca aaaagtggga ttagaaaaag actaaaaaaa attataattg gcttcaaaac
     1021 aatactttac ctttccttca aaaaacaatt cttcattttt atatgcaaac cctacctctt
     1081 caccactttt aggagttatt ttaactttat tttgtacttt tttatttaaa aatgccagat
     1141 aaaaacaagc ccccattcct gtgccacaag ctaaggtttc atcttcaact ccgcgttcat
     1201 aggtgcgaac ttttaaatga ttttcatcta aaatttttac aaaattaaca ttggcattat
     1261 atttttgtct cattttttga caaagcattg tatcaaattc atctaaattt tgacaaaaat
     1321 gtactagatg tggaactcca gtgttgcaaa gttgccaagt ttttcctaat tcttcaaaag
     1381 tattttgcac gctttttatt ttgcctaaag atacttcaac tttatcttga tttacctttg
     1441 cttttattac tcctgcaccg gttaaaaaac tcatgttagg atttattttg ttaatatgat
     1501 gtgcaaaatg tgccgcagcc cttgagccat tgccacacat agcagccctt gagccatcgt
     1561 tattataaaa ttcccattca aagtcgtatt tttcatgagg caatatcacg ataaagccat
     1621 ccgcacctat accctcataa cgattacaaa gttctttagc taaagcactt ctatcttctt
     1681 ttctatcagc atttgttatg acaaaatcat tcccacttgc acaatattta taaaatttca
     1741 catttttcct ttagaaattt cttgtattac tttaacacat tcttgcctaa aatcggcata
     1801 agaattagta tttttaatga taaaatctgc ttttttaagt ttttcttcaa tatctatttg
     1861 agaatcaagt cttgcttttg cagcttctaa gctgagctta tctctttgca tgattctttt
     1921 aaggcttaat tctttaggtg tgtaaattac aatgactttg cctaaatttt cataagcacc
     1981 gctttcaaaa aaaagaggaa tttctacaaa aaaagcttta ttttctttat ctagaatttg
     2041 tatttgttct aaaattttag ctcgaatttt aggatgagtg aaattttcta agattttttt
     2101 agcttcttta ttgttaaaaa caatttttcc aaggattttt ctatcgattt tcttttcttt
     2161 tgtgagtaaa ttttttaaac taaagggaga aaaaatcttt tcaagttcta aagcattttc
     2221 atctaaaatt ttatgagcga ttttgtctgc gctaatgctt ttaaagtcta aagaattcgc
     2281 tatttctata aaagtgcttt taccacaagc aattgaagcg gttacaaaaa aagcattttt
     2341 catcttatgc cttattaaaa cttttttcgt taaaatacct ttttagttct taaaggaaaa
     2401 taaatgaaaa tttcatatga agatgcaggc gtaagtatag ataatggaaa tacctttgta
     2461 gaggctataa aacctttggt taaagaaact tttaatgata atgttgtagg tggaattggt
     2521 tcttttgctg gtgcttttag aatgccaagt ggttttaaaa agcctgtgat tttaggtgca
     2581 acagatgggg ttggtaccaa gcttcgcttg gcaattgatg ctaaaaaata tgatactata
     2641 gggcaagatt tagtagcaat gtgcgtgaat gatttgattt gtaattttgc tacgcctttg
     2701 tttttcctag attattatgc tacagccaag ctcgaagtag aagtagcaaa ggctgttgta
     2761 tcaggcattg ccaagggatg taagatggca aattgtgcat taattggcgg agaaactgct
     2821 gaaatgcctg gaatgtatgc aaaagatgat tttgatcttg cgggttttgc agtgggtatg
     2881 gctgaagaag atgagattga tagaagtaaa tttgttaaaa atggtgatat tttattggca
     2941 ctttctagtt caggacttca ttcaaatggt tattctttag ctagaaaagt actttttgaa
     3001 agtttaaaat taaaatttga tgacaagata gagggtaaaa atttaattga tattttgtta
     3061 gaacctacaa ggatttatgt gcgtgatttt cttacactaa agccttatat cagtgctcta
     3121 gctcatatta cagggggtgg tttagtagaa aatttaccac gcgttttacc tcgtggtatg
     3181 ggtgcaacta tacgcaaaca tcatcttaaa actcctgaaa ttttttatac tataggacag
     3241 gctgtagaag aaagcgaaat gtatagaagc tttaacatgg gagtgggttt agtaatggtt
     3301 gtagatcctt ctaatgtaag taaggtttta gaaaattcag atgcctttat tatcggcgaa
     3361 atttgcatta atgaaggtat tgttttagaa tgaaaataaa gcgttaatac gctttatttt
     3421 tgtattttaa gttctatttt tgtagtgttt tgttcttttg gcaaaggatt ggtttgtgct
     3481 agataaaagg ctacaagcac atttacaagc atagcgataa gtaaaagagg agtggttcgt
     3541 tttataatat ccattggagc tacttttgca aatccagcta aagctatgat ttcgcctgct
     3601 attggtgaag ctgcacgacc taaacaagat gcaatttcta taggtaaaac tagagtaata
     3661 ggtgcaacgc ctaattttgt agctatatca ggagctagtt ttccaaaagt attaaaagcg
     3721 gcaattccac ttcccataat cactgtggca aaataaacta aaaagcttaa aatagctata
     3781 ctcaaaagaa ttccaaacca tgcaaaattt cctgttccaa gatttgaaac cgcgttagca
     3841 aggatattaa ctccaccaag tgctttaatg ccttcagcaa atactccagc ggcgatgatt
     3901 atgcttacga ctgagataaa aatttcagcc atagcctttt aaaatcacca tcatatcttc
     3961 gcctaatttt ctagcatttc tgtgtcttgc aaattcaaca agaaaaacta aagaaattct
     4021 tacaaaattt gctatcacaa catcgagctt gatagtaaaa aaatacgcta taaataaaaa
     4081 tacaacaggt aaccaaggaa agagtatgta aaaagtaggg catttaggat caatgatttg
     4141 cggaatttca acttcatcat ttaaaacacc tttttcttta tctcttttat caatccaagc
     4201 aaaataaaaa ggaatcaaga tggcaataat tacaacatag gtaatcacac tataaatttg
     4261 gtaatttaaa aaaagcctta cgacattatc actttgtcct accatatctg ccatattgat
     4321 tgaatttcca tcttttggat cataatcaag tgcaattaaa gaaagcgcac atacagttgt
     4381 aataggacgg attttaagtg agattaaaac aggataaata tatgctaaca aaagcaaaag
     4441 caattcagca tagctagaaa tgacgatttt taaagccatt ccaacaacaa aagttccact
     4501 taaaattaag tatttatttt ttgatttttc ctgagggttt atttgctaaa aaagcaagtt
     4561 ttgccgaagc attgatatgt ttcatgtaag cagtaaagcc tgccacactc atgataataa
     4621 gccctgctcc agaaagctga cttttaaaag tcgctgtgat aaaagataac tatcaggtaa
     4681 aacatttaaa agcttgtata ctctctgctt ggagtttttg gtataggtgt tcctgtgata
     4741 taaaaagcaa aaataagcaa gataatacct gaaagaaaaa atacaaaaat aggattgtat
     4801 tttttaagta tataataagc aacaacaatt accgctaaaa gtgtagaaca tatcataaaa
     4861 attggcatga tttctcctaa agttattatt agcttttatt ttattttagc taaaatttaa
     4921 ctaataaata tttttcattt aaaattttac ttattttttg cattataaaa ttaataatat
     4981 gtatagtttg gttactgaaa agtttatgtt tgtttaaaaa aatgattttt gtattataat
     5041 tatacacaaa tcataaatat taaaaaggat ctagtgtggc aagaattttg gcatttgata
     5101 taggaataag ctctattggc tgggcattta gtgaaaatga tgagttaaaa gattgtggag
     5161 ttaggatttt tacaaaggct gaaaatccca aaacaggaga atccttagcc ttgccaagac
     5221 gccttgcaag aagtgccaga aaacgccttg ctagacgcaa agcaaggcta aatcacttaa
     5281 aacatttaat cgcaaatgaa tttaagttaa attatgaaga ttatcaaagc tttgatgaaa
     5341 gtttagctaa ggcttataaa ggctctttaa ttagccctta tgagttaaga tttagagctt
     5401 taaacgagct tttaagtaag caagattttg caagagtgat tttacatatt gcaaaaaggc
     5461 gtggctatga tgatattaaa aataatggtg atgaagaaaa gagcgagatt ttaaaagcta
     5521 tcaagcaaaa tgaagaaaaa ctagtaaatt atcaaagtgt gggagagtat ctttataaag
     5581 agtattttca aaaattcaaa gaaaattcca aagaatttat aaatgttaga aataaaaaag
     5641 aaagttatga acgctgcata gcgcaaagtt ttttaaaaga tgaattaaag cttatttttc
     5701 aaaaacaaag agaatttggc ttttcttttt caaagaaatt tgaagaagaa gtgcttagtg
     5761 tagcatttta taaaagggct ttaaaagatt tttctcattt agtgggaaat tgcagttttt
     5821 ttactgatga aaaaagagcg ccaaaaaatt cgcctttagc ttttatgttt gtagcactta
     5881 caagaattat caatctttta aacaatctta aaaatactga aggaatttta tatacaaaag
     5941 atgatttaaa caccctttta aatgaagttt taaaaaacgg cactctaact tataaacaaa
     6001 caaaaaagct tttgggctta agcgatgatt atgaatttaa aggagaaaaa ggaacttatt
     6061 ttattgagtt taaaaaatac aaagaattta taaaagccct aggtgagcat aatttaagcc
     6121 aagataattt aaatgaaata gcaaaagata ttactcttat aaaagatgag attaaactta
     6181 aaaaggcttt agcaaaatat gatttaaatc aaaatcaaat tgatagttta agcaaattgg
     6241 aatttaaaga ccatttaaat ataagtttta aagccttaaa acttatcact cctttaatgc
     6301 ttgaaggtaa aaaatacgat gaagcttaca atgagcttaa tttaaaagta gcaatcaatg
     6361 aagataaaaa agacttttta cccgcattta atgaaactta ttacaaagat gaagtaacta
     6421 atcctgtggt tttaagggcg attaaagaat atagaaaggt cttaaatgcc ttacttaaaa
     6481 aatacggtaa agtgcataaa ataaacattg aattagcaag agaagtaggt aaaaatcaca
     6541 gccaaagagc taaaatagaa aaagagcaaa acgaaaacta caaggccaaa aaagacgccg
     6601 aacttgaatg tgaaaaacta ggcttaaaaa taaatagcaa aaatatttta aaattaagat
     6661 tatttaaaga acaaaaagaa ttttgtgctt atagtggaga aaagattaaa attagtgatt
     6721 tgcaagatga aaaaatgctt gaaattgatc acatttaccc ttattctaga agttttgatg
     6781 attcttatat gaataaagtt ttagttttta ccaagcaaaa tcaagaaaaa cttaatcaaa
     6841 ccccctttga agcctttggc aatgatagtg caaaatggca gaaaattgaa gttttagcaa
     6901 aaaatttacc tactaaaaag caaaaaagaa ttttagataa aaattacaaa gacaaagagc
     6961 aaaaagactt taaagataga aatctaaacg atactcgcta catcgcaagg cttgttttaa
     7021 actacactaa agattattta gattttttac ctttaagcga tgatgaaaat acaaagttaa
     7081 acgacacaca aaaaggctca aaagtgcatg tagaagcaaa aagcggtatg cttacatcgg
     7141 ctttaagaca cacttggggc tttagcgcta aggatagaaa taaccatctt catcacgcca
     7201 tcgatgcagt aattattgct tatgcaaaca actctatcgt aaaggctttt tcagatttta
     7261 aaaaagagca agaaagcaac agtgcagaac tttatgcaaa aaaaattagt gaattagatt
     7321 ataaaaacaa aaggaagttt tttgagcctt ttagtggttt taggcaaaag gttttagata
     7381 aaattgatga aatttttgtc tcaaaacctg agagaaaaaa gccaagtgga gctttacatg
     7441 aagaaacatt tagaaaagaa gaagaattct atcaatcata cggcggaaaa gaaggagttt
     7501 taaaagccct agagcttggt aaaatccgca aagtaaatgg taaaatagtt aaaaatggcg
     7561 atatgtttag agtggatatt tttaaacaca aaaagacaaa taaattttat gccgtgccaa
     7621 tttatactat ggattttgct ttaaaagtat taccaaataa agccgtggtg caaggtaaag
     7681 ataaaaagtc aggtcttata aaagattgga ttttaatgga tgaaaattat gagttttgct
     7741 tttctttata caaagatagt ttgattttaa ttcaaactaa agatatgcaa gagccagaac
     7801 ttgtttattt taatgctttt acaagctcta ctgttagttt gattgtttca aaacacgata
     7861 ataaatttga aacgctaagc aaaaatcaaa aaatattgtt taaaaatgca aatgaaaaag
     7921 aagtaatcgc aaaaagcata ggaattcaaa atctaaaagt atttgaaaaa tacatagttt
     7981 cagcacttgg agaagtgaca aaggctgagt ttagacaaag agaagatttt aaaaaatgag
     8041 ttacgatgaa gcttttaaaa cactgcttat tagctctaat gccaagctaa atttagagtt
     8101 aaatcatctt gtgattaagc aagatgaaaa tatagccaaa ttgtttttaa aagatataaa
     8161 tatcatcgtt ttagaaagct tacaagtaag cctgagttcc gcacttttta acgcttttgc
     8221 aaggcataaa atcatcttac taacctgcga tgaaactcat agtataaatg gtgtttttac
     8281 tcctttttta gggcattttc aaagtgcaaa aatcgcaaaa gagcaaatga atgtaagtgc
     8341 tcaaaaaaag gctattttat ggcaaaaaat cattaaaaat aaaatcctaa atcaagcctt
     8401 tgttttgaaa aaacacaata aaatagagca aagcaatgag cttataaatt tggctaaaaa
     8461 agtaagctta aatgatagta aaaatatcga agctgttgcg gcggcgcttt attttaaaac
     8521 tttgtttggc gtttcttttt caagagatga gctttgcttt gaaaattctg ctttaaatta
     8581 tggctatgca atcattagag cttgtattat tagagcagtt tgtataagtg ggcttttgcc
     8641 ttggcttggc ataaagcacg ataatattta taattctttt gcgctttgcg atgatttgat
     8701 agaagtgttt agggctagtg ttgatgattg tgttttaaag cttaagggtg aaagtgagtt
     8761 tttaagcaaa gatgataaaa gagcgttgat tggcaattta caaagcaaaa tcaattttga
     8821 tgggcaaaat tatcctttaa acagagcgat aaatcattat gtggcaaatt ttaaaaatgc
     8881 tttattgtat gaagatgagc taaagatagt aaaatttgat gattgaagat aaatttatgc
     8941 gtgtgctttt gatgtttgat gtgccaacta aaagtaaaaa agaacaaaaa ctagcaagta
     9001 aatttagaaa caatcttata aaattgggtt attttatgct acaatttagc gtttatatgc
     9061 gtatttgcaa gggtttaagt tctgcaaaaa gttctattga aaatgtaaaa aagattttgc
     9121 caccttatgg aaatgtaagg gctttaatca tcactgaaaa gcagtttgat aaaatggagc
     9181 ttttgcttgg tggcatagtt tttaacgaaa aagttaataa cgaaaccaat gtaacgcttt
     9241 ttgatataga tagtcatgga gaatttaaat acaaaaattc aaataatgaa gaaattcaaa
     9301 taaacaaaaa acaagaaaaa tatcatcagc aaaatttatt tgaattttaa aagcggtttt
     9361 aggggattgt aaccccgcag agtcccgcaa actctttatt ttagtccctt tttaaatttc
     9421 ttatgagatt atagcatgat ttttgctatt ttttatcaaa aaatcccgaa attttcatta
     9481 tctggtaaat atctatttta ccataaagaa atttaaaaag ggactaaaac ttatatattc
     9541 tacaaagctg taaaaagttt attttaccat aaagaaattt aaaaagggac taaaacttca
     9601 ctccacccct gcttaagcat tccaacattt taccataaag aaatttaaaa agggactaaa
     9661 ataaacccta gtggattgaa actccgctag ggctaattac tccactaaaa ggaggttgcg
     9721 aatttgaaac ttattgaaat ttagggttga ttaaaatcga aataaaatta tttaaataat
     9781 tttaaggcat aaagataata tctactaaac tttcattttc taacatttca cattcttttg
     9841 gcaccaccat aagggcagct ttattgttaa gattgtttat aatcgcacta gagccttctt
     9901 ttttgccttc aagattggct aaaatgcgtc catttttaaa ctctatattg caagcgacaa
     9961 attccaaata aggtgttttt ttcttgtaac ttccttgtaa aaaggctttg caaatatagt
    10021 ctttaggttg aagtaaccaa gagtttaaaa tctctcttgt gtaaagatta aacattacca
    10081 tagccgagta aggaaaacct ggtaaggcga tgatgaattt ttcattagcc ttagctattt
    10141 tgatatgtct acctggtttt atgtcggctt tatcgatgat gatttcgtat tctttgatgg
    10201 ctttttttaa aaagtcaaaa tctcccatag aaaccccgcc cgttgtaacc aaaatatcac
    10261 aactttgcaa agcactttca agggtggaaa aagtggcttt ctcatcatct tttaaaagag
    10321 gaaaaaccct tgtatcgcaa tttaaatttt tagctaaatt agctatggcg atatgatttg
    10381 aagagcggat ttgagcagga ttttccaagg cttctcctag atctttgatc tcacttccac
    10441 tacttaaaac ccctacaata ggctttataa acacactaat gtgaaaaaat ccaagttcag
    10501 ctaaaagagc tatctcgcta taatttaacc ttgtgccttt tttgagtaaa atttcatctt
    10561 ttttatagtt ttctcctacc gcacgcacgg caaaagcttg gggaactttt ttttctataa
    10621 aaagagtatt attttctatg cgtatatttt caacagggac taaagtatcg cttccttcgc
    10681 tcatgagtga gcctgtaaag gtttttacac aagtgccatt ttgtacgcta aattgtggca
    10741 tagtacccgc aggtgtgagg cctaaaattt ttaaaggctt gtcttgatct tcaaatttga
    10801 tcgcataacc atccatagcc gaggttggaa attcaggctg atttttaggg gcttttatat
    10861 cttgagctaa aatgcgtcct aaacactctg taagagctat tttttcaatc ttttcataag
    10921 ttttgatatg agaatgtaaa atttttaaac tttcttcata agacattagc attttttatc
    10981 cttttaaaag tcctgcaccg caaagcttgg ttgatctttc tttggcataa attctttctt
    11041 tgtttatcac atcatacttc caaatgggcg cacttgcttt aaaatcttca acaaattcat
    11101 taagaagttt aagtcctaat tttctttgtt tgcttaaaat tcctgcaaaa tacgagcttt
    11161 catgtatcgc tacatcgcct atagagtgag caaaaagcaa gctaatacca tcaaaatcta
    11221 ctcttttttg ccactcatca aaccattttt ttaaaagcga ttcataaata tcaaaactaa
    11281 gtgcctcaat acctccttct tcacgcacaa taccacaaaa agtcagtaaa gcaccgcagt
    11341 ttttatcctt ggaaaattca taccattggc tataaatttt aggaatatct aaagagcctt
    11401 gataaagtgt aaaatgtttc atttagcctc cacaaactgg cggtaaaagt gctattttat
    11461 caccatcttt taacttggtg ttttcatcaa aaatgatttc atcatttaaa gatacagcac
    11521 aaagttctag ccattctttt aaactctcat ctttttgcaa aatttctttt aattctttta
    11581 aattttttac ttcaagttct aaattttctt tatttatagg gcctaaaaat tccactttta
    11641 ccattttatt cctttacttc taaatttccc atcattccta aatcttcatg ttctaaaata
    11701 tggcaatgat acattctaag tcctttaaaa tcttgtttca ttctaagtct taactcttca
    11761 ttaggacgca catttatagt atctctgaag gctctaaatt cggctttttg aactttgcca
    11821 ttgagttttg atgagatgag ttcaaattgc gtgccgtgta tgtggaaagg atgatccatg
    11881 tgagatttgt ttatcactat ccagtcttca actactccaa gcttggagct taaatcaatg
    11941 cgttttaaat catagctttt gccattgatt aaaaacatag acgcaagagc gatttttaat
    12001 tcattttcac tttttcccat cattccatgc atttgcatat gatcttcact catgattatt
    12061 tctttaaatt ccttaggttc ttctaaaggt ttgaaaattt ttaaattttt tggaagttct
    12121 aatttttctt tttttaggct aatactagct aaaaataggg tattagattc ttcttttacc
    12181 atcattttgt ccctatcata ataagcactt tctagcttaa aattcccatc ttttggagcg
    12241 tcgattaaaa cttctacacg agaagcagga ctcaagaaaa gttcttcttt ataaatagct
    12301 ttttctataa gtccaccatc agtaccaaca agtataaact tagctccttg tatgcgtaaa
    12361 tttaaatatc ttgctgcagt agcattataa atgcgtatgc gttcgtttgt ggcgagtttg
    12421 attttaggtt taaattgtcc attgatgagt acaaattctc cttctctacc atttagccaa
    12481 tcatttaggt tgttgtttgg aatttgagcg ttttcatcaa gacgcaaatc gctaatcatc
    12541 aaatcttttt cttttaaatg acttaaagca tctttttttg ctttgatcac aaaagcccct
    12601 gctaaaccca taaaaacttg tttagaagcc gtataatgag gatgtggatg ataccagtaa
    12661 gttcctgcgc tatcttgagg aatttcaaaa cgatatattc tttcttctcc tgctaagata
    12721 ggatcatgtg ggcttccatc ttgatcaggt ggcacaggaa cgccatgcca atgtatagtt
    12781 gtagcttctt tgagtttgtt tttgactaaa atttcaagtt tatctccttc aaaaacttct
    12841 atttttggag caggcacgag gccattgtaa gtataaaata aggttttttt acctttgata
    12901 agctctatat gattttcttt gatttctagg gtagcacgaa aaatattttt ttctttactt
    12961 tcatttttga gtaaaggcaa ggcttttaaa atttctcctt gggggaattg ttttggatct
    13021 aaaagcttta aattttttgg agcaaagttt ataaaagaag tatctaagtc atgatttata
    13081 gaatgatttt tatgcatgga gtgcatatca tgcataggat ttgcataggc tacacccata
    13141 cttgctagag tgagtgcatt aaattttaaa aaatttcttc tattcattag tttttccttt
    13201 tgcttgattt tttgtattat agtcattatt tttttaactt tagtaaatat ttattttgaa
    13261 aatttggttt aattttgtta tgattttagc aatttaatca aggaaaaata atgttttatg
    13321 aaaaaattca aaccccagct tatattttag aagaagataa attaagaaaa aattgtgagc
    13381 ttttagcaag tgttggcgaa aaaagtggtg ctaaagtgct tttagcttta aaaggttttg
    13441 ctttttcagg agcgatgaaa attgttggag aatacttaaa aggttgtact tgtagcggac
    13501 tttgggaagc aaaatttgct aaagaataca tggataaaga aattcatact tattcgcctg
    13561 cttttaaaga agatgaaata ggtgaaatag ccagcttatc tcatcatata gtgtttaact
    13621 ctttagctca atttcataaa tttcaagcta aaacacaaaa aaattcctta ggtcttcgtt
    13681 gtaatgttga attttctcta gccccaaaag aactttacaa tccttgtgga agatactcaa
    13741 gacttggaat tcgtgctaaa gattttgaaa atgtggattt aagtaccata gaaggacttc
    13801 attttcacgc actttgcgaa gaaagtgctg gtgctttaga agctgtttta aaggtttttg
    13861 aagagaaatt tggcaaatgg atagggcaaa tgaaatgggt gaattttgga ggaggacatc
    13921 acatcactaa aaaaggctat gatgttgaaa agcttattgc tttgtgtaaa aatttcagtg
    13981 ataaatacgg tgtgcaagtt tatcttgaac caggcgaagc ggtgggttgg caaacaggaa
    14041 atttggtggc tagtgtagta gatatcatag aaaatgaaaa acaaattgct attttagata
    14101 cttcaagcga agcgcatatg ccagatacta tcatcatgcc ttatacaagt gaagttttaa
    14161 atgctagaat tttagccaca agagaaaatg aaaaaatttc agacttaaaa gaaagcgaat
    14221 tttcctattt gcttactgga aatacttgtt tagcgggtga tgtaatggga gaatacgcct
    14281 ttgataaaaa gcttaaaatc ggcgataaaa ttgttttttt agatcaaatt cattacacca
    14341 ttgtgaaaaa cacaactttt aatggtataa gacttccaaa tctcatgctt ttaaatgcaa
    14401 aaaatgaact tcaaatgata agagaatttt cttataagga ttattcttta agaaattagt
    14461 attatttata atttgcataa aatgttaa
//
LOCUS       DAPOLW010000031        14469 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.031, whole genome shotgun sequence.
ACCESSION   DAPOLW010000031 DAPOLW010000000
VERSION     DAPOLW010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14469
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.031"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..1099)
                     /locus_tag="ROE18_000676"
     CDS             complement(<1..1099)
                     /locus_tag="ROE18_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDX3650875.1"
                     /translation="MNLKQISAIIIVKNAKQTLLECLNSLKDFDEIILLNNESSDNTL
                     NIANEFKKDFANLHIYHSAFIGFGALKNLALSYAKNDWILSIDADEVLENECIKELKN
                     LELQEDNIIALSRKNLYKGEWIKACGWWPDYVWRIFNKNFTRFNDNLVHESLVLPSNA
                     KKIYLKNGLRHYAFRDISHLIDKMQYYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYF
                     LKNGFLYGYKGFIISVCNALGTFFKYMKLYELQKQKPKTCALIITTYNQKERLKLVLD
                     SVKNLAFLPNEVLIADDGSKEDTARLIEEYQKDFPCPLKHIWQEDEGFRAAKSRNNAI
                     KASKSEYIILIDGDMILEKDFVKNHLEFAKRK"
     gene            complement(1096..1983)
                     /gene="htrB"
                     /locus_tag="ROE18_000677"
     CDS             complement(1096..1983)
                     /gene="htrB"
                     /locus_tag="ROE18_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HDX3650876.1"
                     /translation="MKNSDRIYLSLYYILKFFVTFMPDCILHFLALIVARIAFHLNKK
                     HRKIINTNLQICFPQYTQKERDKLSLKIYENFAQFGIDCLQNQNTTKEKILNKVNFIN
                     ENFLIDALALNRPIIFTTAHYGNWEILSLAYAAKYGAISIVGKKLKSEIMYEILSQSR
                     TQFDIELIDKKGGIRQMLSALKKGRTLGILTDQDCVENESVRLKFFNKEVNYQMGASL
                     IAQRSNALIIPVYAYKEDGKFCIEFFKVKDSQNASLEELTLYQAQSCEEMIKKRPWEY
                     FFFHRRFASYNKEIYKDAK"
     gene            complement(1973..3001)
                     /gene="waaC"
                     /locus_tag="ROE18_000678"
     CDS             complement(1973..3001)
                     /gene="waaC"
                     /locus_tag="ROE18_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HDX3650877.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLIDKLYALPLKDKKILKSLKILLKARKNNYNAVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNAKNLAFKQDVFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQTKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFNLEELMAFTKMMDLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIIDTGKKIQNAKHIDKSDFCITRIEEEDIFKL
                     AKGLLNEK"
     gene            3067..3861
                     /locus_tag="ROE18_000679"
     CDS             3067..3861
                     /locus_tag="ROE18_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HDX3650878.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSGSEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIENFFNFIENYEPKL
                     VSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG
                     RGIKLDTLCSMVGLPGKYDVHGDEVMKLFYENKLEKIHEYCESDVLNTYMLFLKYELI
                     KANVDEEDYVGFLSYMRDFLCAKKSDRSYTEVFAKACESEISKVRS"
     gene            3919..4905
                     /gene="galE"
                     /locus_tag="ROE18_000680"
     CDS             3919..4905
                     /gene="galE"
                     /locus_tag="ROE18_000680"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HDX3650879.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDL
                     QKTRAFKFFEQDLSDFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNT
                     TNLIEICLQTGVNKFIFSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVLRDA
                     SMANPEFKHCILRYFNVAGACMDYTLGQRYPKATLLIKVAAECAAGKRDKLFIFGDDY
                     DTKDGTCIRDFIHVDDISSAHLAALDYLQENESNVFNVGYGHGFSVKEVIEAMKKVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLELICKSAFDWEKQC"
     gene            4899..6593
                     /gene="pglK"
                     /locus_tag="ROE18_000681"
     CDS             4899..6593
                     /gene="pglK"
                     /locus_tag="ROE18_000681"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HDX3650880.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSIFVSFIETFAISLVMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GRYHAIAYKVFSKFLNINYEKFTQKNQSEILKSITGEVYNLSTMISSFLLLMSEIFVV
                     LLLYALMLLINYKITLFLSIFMVLNAFILVKILSPIIKKAGVRREEAMKNFFEILNTN
                     LNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVV
                     FLVLKNESDISGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLDIIYQNLRQE
                     EENLGEEKLSFNQELKICNLSFGYEGKKHLFKNLNLNIKKGEKIAFIGESGCGKSTLV
                     DLIIGLLKPKEGQILIDEQELNANNTKNYRQKIGYIPQNIYLFNDSIAKNITFGDAVD
                     EEKLNRVIKQANLEHFIKNLSQGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEILVL
                     DEATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK"
     gene            6590..7669
                     /gene="pglH"
                     /locus_tag="ROE18_000682"
     CDS             6590..7669
                     /gene="pglH"
                     /locus_tag="ROE18_000682"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HDX3650881.1"
                     /translation="MMKISFIIATLNSGGAERVLVTLVNALCKEHEVSIIKFHAGESF
                     YKLENEVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKADVFISFLDTTNIACI
                     AAKIGFKTPLIISEHSNEAYLKPKIWRFLRRVSYPFCDALSVLGSSDKVYYERFVKRV
                     RLLLNPCHFSDEIPFDSSFEKENLVLFIGRLDHNKNPAMFLKAIAHLDKNLQENYKFV
                     IAGDGELRQELEYKVKSLGIKVDFLGRVENVKTLYEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLIGCDDEIALAKKLELVLNNENFRKELVNNAK
                     QRCKDFEISHIKEEWLKLIAEVKNA"
     gene            7662..8591
                     /gene="pglI"
                     /locus_tag="ROE18_000683"
     CDS             7662..8591
                     /gene="pglI"
                     /locus_tag="ROE18_000683"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HDX3650882.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSEALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMAKFSGEFFSVF
                     KKSLLENQRFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAHR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRVALCKN"
     gene            8579..9676
                     /gene="pglJ"
                     /locus_tag="ROE18_000684"
     CDS             8579..9676
                     /gene="pglJ"
                     /locus_tag="ROE18_000684"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HDX3650883.1"
                     /translation="MQKLGIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EIPECQIHFLECSKPSENPILKFLKLPFLALKYKKLCSNLGIDTEFVFLNRPNYIALI
                     ARMFGNKTRLVINECTTPSVMYAKNNFNSLANKFLISLLYPRADLILPNSKGNLEDLE
                     QNFSIKPKKCEILYNAIDLENIEQKALEDIALKDKFILSVGRLDKGKNHALLIRAYAR
                     LKTDLKLVILGEGVLKDELLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFE
                     GFSNVLIESLACSCAVVCTDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDK
                     LRKAYKNKAKTRAKAFDKVKIARDALKYLLG"
     gene            9680..11821
                     /gene="pglB"
                     /locus_tag="ROE18_000685"
     CDS             9680..11821
                     /gene="pglB"
                     /locus_tag="ROE18_000685"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HDX3650884.1"
                     /translation="MLKKEYLKNPYLVLFAMIVLAYVFSVFCRFYWVWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSALTYWLYKVTPFSFESIIL
                     YMSTFLSSLVVIPIILLANEYKRPLMGFVAALLASIANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMVRMILKKDFFSLIALPLFIGIYLWWYPSSYTLNVALIGLFLIYTLIFHRK
                     EKIFYIAVILSSLTLSNIAWFYQSAIIVILFALFALEQKRLNFMIIGILGSATLIFLI
                     LSGGVDPILYQLKFYIFRSDESANLTQGFMYFNVNQTIQEVENVDFSEFMRRISGSEI
                     VFLFSLFGFVWLLRKHKSMIMALPILVLGFLALKGGLRFTIYSVPVMALGFGFLLSEF
                     KAILVKKYSQLTSNVCIVFATILTLAPVFIHIYNYKAPTVFSQNEASLLNQLKNIANR
                     EDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFALSKDEQAAANMARLSVEY
                     TEKSFYAPQNDILKSDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPA
                     RMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPLDVKNGEIYLSNGVVLSDDFRSFKI
                     GDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSA
                     YVQMFFLGNYDKNLFDLVINSRDAKVFKLKI"
     gene            11831..12961
                     /gene="pglA"
                     /locus_tag="ROE18_000686"
     CDS             11831..12961
                     /gene="pglA"
                     /locus_tag="ROE18_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HDX3650885.1"
                     /translation="MRIGFLSHAGASIYHFRMPIIKALKDRKDEVFVIVPQDEYTQKL
                     RDLGLKVIVYEFSRASLNPFVVLKNFFYLAKVLKNLNLDFIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFVINSLYKLSFKFAHQFIFVNESNAEFMRN
                     LGLKENKICVIKSVGINLKKFFPIYVESEKKELFWKNLNIDKKPIVLMIARALWHKGV
                     KEFYESATMLKDKANFVLVGGRDENPSCASLEFLNSGAVHYLGARSDIVELLQNCDIF
                     VLPSYKEGFPVSVLEAKACGKAIVVSDCEGCVEAISNAYDGLWAKTKNAKDLSEKISL
                     LLEDEKLRLNLAKNAAQDALQYDENIIAQRYLKLYDRVIKNV"
     gene            12954..13556
                     /gene="pglC"
                     /locus_tag="ROE18_000687"
     CDS             12954..13556
                     /gene="pglC"
                     /locus_tag="ROE18_000687"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HDX3650886.1"
                     /translation="MYEKVFKRIFDFILALVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGGLLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLPLYNKEQKLRHKVRPGITGWAQVNGRNTISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTEKFNGKN"
     gene            13543..14130
                     /gene="pglD"
                     /locus_tag="ROE18_000688"
     CDS             13543..14130
                     /gene="pglD"
                     /locus_tag="ROE18_000688"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HDX3650887.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFES
                     TLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPY
                     VVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL
                     PNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM"
     gene            14087..>14469
                     /locus_tag="ROE18_000689"
     CDS             14087..>14469
                     /locus_tag="ROE18_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650888.1"
                     /translation="MKKVFLWEYLQKGCKLHFNNNLVVHYIVNPSPLGWIVINLLTIC
                     LICYIFPLKNSLKHKKLFSLKANVNSKNSRIIKYTGIAAFLGGLIGIWYNFEGFYQLL
                     FFFELENENLKTLWSLQVSVSSVITG"
BASE COUNT         4859 a         1745 c         2561 g         5304 t
ORIGIN      
        1 ctttgcgttt tgcaaattct aaatgatttt ttacaaagtc tttttctaaa atcatatcac
       61 catcaattaa aattatatat tcacttttag aagctttaat agcattattt ctactttttg
      121 cagcacgaaa accctcatct tcttgccaaa tgtgttttaa agggcaagga aaatcttttt
      181 gatattcttc aataagcctt gctgtatctt ctttgctacc atcatctgcg attaaaactt
      241 cattgggtaa aaaggctaga tttttaacac tatcaagcac taatttaagg cgttcttttt
      301 gattataagt tgttattatt aaagcgcaag tttttggctt ttgcttttga agttcatata
      361 atttcatgta tttaaaaaaa gtccctaagg cattgcaaac gctaattata aaacccttat
      421 aaccatataa aaagccattt tttaaaaaat aatttctaaa aaaagtccaa aaagctctta
      481 aatttgcttt taaaacacca ctttttttgt gtatattttg ttttgcccaa aggcttgagt
      541 agtactgcat tttgtcaatt aggtgggaaa tatctctaaa agcataatgc cttaatccat
      601 ttttaagata aattttttta gcattacttg gcaaaacaag gctttcatgt actaaattat
      661 cattaaaacg agtgaaattt ttattaaaaa ttctccaaac ataatcaggc caccaaccac
      721 atgcctttat ccattcgcct ttatagagat ttttacgact aagtgcgatg atattatctt
      781 cttgaagttc taaattttta agctctttaa tacactcatt ttcaagcact tcatcagcat
      841 caatgcttaa aatccaatca ttttttgcat aacttaaagc aaggtttttt aaagctccaa
      901 aacctataaa agcactgtgg taaatgtgca aattagcaaa atctttttta aattcattag
      961 ctatatttag ggtattatca ctactttcat tgttaagtaa aataatttca tcaaaatctt
     1021 ttaaagaatt taaacattca agcaaggttt gttttgcatt ttttacgatg ataatagcac
     1081 ttatttgctt tagattcatt ttgcatcctt gtaaatttcc ttattataac ttgcaaagcg
     1141 tctatgaaaa aaaaagtatt cccaaggtct ttttttaatc atttcttcgc aactttgtgc
     1201 ttgataaagt gtcagttctt ctaagcttgc attttgagaa tcttttactt taaaaaactc
     1261 tatgcaaaat ttaccatctt ctttataggc ataaacaggg atgatcaaag cattacttct
     1321 ttgtgcgata aggcttgctc ccatttgata attcacttct ttgttaaaaa attttaatct
     1381 tacgctttcg ttttctacac agtcttgatc agttaaaatt cccaaagttc tccctttttt
     1441 tagagcgctt agcatttgtc ttatgccgcc ttttttgtcg ataagttcta tgtcaaattg
     1501 ggtgcgactt tggcttaaaa tttcatacat aatttcactt tttaactttt tccctactat
     1561 agaaatcgca ccatatttag ctgcataagc aaggcttaaa atttcccagt ttccatagtg
     1621 tgcagttgtg aagataatag gacgatttaa agctagagca tctataagaa aattttcatt
     1681 gatgaaattt actttattga gaattttttc tttggtggtg ttttgatttt gcaaacaatc
     1741 aatcccaaat tgagcaaaat tttcataaat ttttaaagac aatttatcgc gttctttttg
     1801 agtgtattga ggaaaacaga tttgcaaatt tgtattgatg attttgcggt gttttttgtt
     1861 aagatgaaaa gcgattcttg ctacaatcaa agctaaaaaa tgcaagatac aatcaggcat
     1921 aaaagtaaca aaaaatttca aaatataata aagactaaga tatattctat cactattttt
     1981 cattaagtaa gcctttggca agtttgaaga tatcttcttc ttctatacgc gtgatacaaa
     2041 aatcactttt atcgatatgc ttggcatttt ggattttttt acctgtatca atgattttat
     2101 tgatatgagt ttgaaaagca ttgcggtagc ttggtgttgc accaaaaatc gtaatagatg
     2161 ctttatttaa agcaaaagct aaatgtgttg gaccgctatc atttcctatg ataagatcca
     2221 tcatttttgt aaaagccatt agctcttcaa gattaaattt tggcgctaat tctatatgtg
     2281 tttcatcaat accactaaga tttaaaacct ctttagcaaa ttcgtattct tttacatttc
     2341 cccaagcgag ccaaattttt gtttgttgaa attcattgat taaaagtttg caaagtatag
     2401 caagtttggt tttaggatag attttatttt ctacacttga gcccacatgt atgagtatgt
     2461 ttttttcgtt tttgtcgagc ttgagtttat tgtttaagag ttgttttaaa ttttcatcta
     2521 cgctaaaaac atcttgttta aaggctaaat ttttggcatt aaaatcagta tttaacataa
     2581 aggaggtaag acttaagtat cttacaaata cattttcatt gtaatctaac tcaagttttt
     2641 ggttgtaaaa attatgagca aaactttctt taaggctatt tttatcaaaa ccaaaattat
     2701 ttctacttaa aattcgactt acaatagcag attttataag cccttgtaga tctattactg
     2761 cattatagtt gttttttctt gctttaagaa gaatttttag gctttttaaa atttttttgt
     2821 cttttaaggg tagggcatag agtttgtcta ttaaaggatg gtttttaagt atgccttcaa
     2881 atttttcatc tacaaaccaa tgaatttcta tatctttttt aaaatttttg ataaattgca
     2941 aaaccacggc actttggata atatcaccaa gtgctgacaa acgaacaatt gctattttca
     3001 ttaaaagcct aatattttaa aatttttgct atgattttag cgaaattatt taaaaaaagg
     3061 ttaaaaatgg caaaaaatga aggttatatt tgtgtttttg attgtgagag tgtgccagat
     3121 gttgagctta tccgcaaaac tttgggtttt gaaggaagtg atttagaggt aagtttaaaa
     3181 gcacttcagt ggcaaaaaga acaaagtggg agtgagtttt tgcctttgcc ttatcataaa
     3241 atcattagta tttgtgcggt tttaagcgat aattttggaa aatttatcaa agtaaataaa
     3301 attgatgggc aaaatgaaaa agaaatgatt gagaattttt tcaattttat agaaaattat
     3361 gagccaaaat tagtcagctt taatggtaaa aatttcgata tgcccgttct tgttttaagg
     3421 gctttaaaat acaatttaaa agcagcaact tatttggata ctcaaagtga taaatggaat
     3481 aattataaaa caagattttc agaattaaaa cattgtgatt tattagaatc cttaggatct
     3541 aacgggcgtg gaataaagct tgatacactt tgttctatgg tgggtttgcc aggaaaatat
     3601 gatgtgcatg gcgatgaggt aatgaaactt ttttatgaaa ataaacttga aaaaatccac
     3661 gaatattgtg aaagtgatgt tttaaacacc tatatgcttt ttttaaaata tgaacttatt
     3721 aaagctaatg ttgatgaaga agattatgtt ggttttcttt cttatatgag agatttcttg
     3781 tgtgcaaaaa aatcagatcg ttcttataca gaagtttttg caaaagcttg tgagagtgaa
     3841 atttcaaaag ttcgatctta agtatttaag aaaatatatt aaaatttatt tttgacattt
     3901 ttaaaaaaag gaatgatgat gaaaattctt attagcggtg gtgcaggtta tataggttct
     3961 catactttaa gacaattttt aaaaacagat catgaaattt gtgttttaga taatctttct
     4021 aagggttcta aaatcgcaat agaagatttg caaaaaacaa gagcttttaa atttttcgaa
     4081 caagatttaa gtgattttca aggcgtaaaa gcattgtttg agagagaaaa atttgacgct
     4141 attgtgcatt ttgcagcaag cattgaagtt tttgaaagta tgcaaaatcc tttaaaatat
     4201 tatatgaaca acactgttaa tacgacaaat ctcatcgaaa tttgtttgca aactggagtg
     4261 aataaattta tattttcttc aacggcagcc acttatggcg aaccacaaac tcctgttgtg
     4321 agcgaaacaa gccctttagc acctattaat ccttatgggc gtagtaagct tatgagtgaa
     4381 gaggttttgc gtgatgcaag tatggcaaat cctgaattta agcattgtat tttaagatat
     4441 tttaatgttg caggtgcttg tatggattat actttagggc aacgctatcc aaaagcaacc
     4501 ttgctcataa aagttgcagc tgaatgtgcc gcaggaaaac gtgacaaact tttcatattt
     4561 ggcgatgatt atgatacaaa agatggtact tgcataagag attttatcca tgtagatgat
     4621 atttcaagtg cgcatttagc ggctttggat tatttacaag agaatgaaag taatgttttt
     4681 aatgtaggtt atgggcacgg ttttagtgta aaagaagtga ttgaagcgat gaaaaaagtt
     4741 agtggagtgg attttaaagt agaacttgcc ccacgccgtg caggtgatcc tagtgtattg
     4801 atttctgatg caagtaaaat cagaaatctt acttcttggc agcctaaata tgatgattta
     4861 gagcttattt gcaaatctgc ttttgattgg gaaaaacagt gttaaaaaaa ctttttttta
     4921 ttttaagtaa ggaagataaa aattttttat ttttcttgct tgttttttca atatttgttt
     4981 cttttataga aacttttgca atttctttag taatgccttt tatcactttg gccagtgatt
     5041 tttcttattt tgatcgtaat aaatatttaa tcagcttaaa agaatatctt aatatccctg
     5101 tttttgaaat cattgtttat tttggggtgg ggcttattgt tttttatgtg tttagagctt
     5161 tgttaaatgc gtattatttt catcttttag caagattttc taaagggcgt tatcatgcga
     5221 tcgcttataa ggttttttct aaatttttaa atattaatta tgaaaaattt actcaaaaaa
     5281 atcaatctga aattttaaag tccattacag gggaagttta taatctaagc actatgattt
     5341 catcattttt gcttttgatg agtgaaattt ttgtagtgct tttgctttat gctttaatgc
     5401 ttttgattaa ttataaaatc actttatttt taagtatttt tatggtgtta aatgccttta
     5461 ttttagtgaa aattttaagc cctatcatta aaaaagcagg agtaagacgc gaagaagcga
     5521 tgaaaaattt ctttgaaatt ttaaatacaa atttaaataa ttttaaattt atcaagctta
     5581 aaaccaaaga agatggagta ttaagtcttt ttaaagcgca aagtgaagct ttttctaaag
     5641 caaatattac caacgaaagt gtagctgcgg tgcctagaat ttatcttgaa ggaataggtt
     5701 tttgtgtact tgtttttatc gtggtatttt tggtgttgaa aaatgaaagt gatatttcag
     5761 gtattttatc cacgatttct atttttgttt tagcacttta tcgcttaatg ccaagcgcaa
     5821 atcgtattat tacaagttat catgatttgc tttattatca ttcttctttg gatattattt
     5881 atcaaaattt aagacaagaa gaagaaaatt tgggcgagga aaaattaagc tttaatcaag
     5941 agcttaaaat ttgcaatctt agctttggtt atgagggaaa aaaacattta tttaaaaatc
     6001 ttaatttaaa cattaaaaaa ggcgaaaaaa tcgcttttat aggggagagt ggttgtggaa
     6061 aaagcacctt agtagatctt atcataggac ttttaaaacc aaaagaaggg caaattttaa
     6121 ttgatgagca agaattaaat gcaaataata caaaaaatta tcgccaaaaa ataggctata
     6181 tcccgcaaaa tatctatctt tttaatgaca gtatagctaa aaatatcact tttggagatg
     6241 cggttgatga agaaaaactt aatagggtta tcaaacaagc aaatttagag cattttataa
     6301 aaaatttatc tcaaggagtg caaacaaaag tgggtgatgg ggggagtaat ttaagcgggg
     6361 gacaaaaaca acgcatagct atagcaagag ctttatattt agagcctgaa attttagtgc
     6421 ttgatgaagc aacttctgct cttgatactc aaagtgaagc aaaaatcatg gatgaaattt
     6481 ataaaatttc taaagataaa accatgatta ttatcgcaca tcgcctttct acgataacgc
     6541 aatgtgataa ggtttatcgt ttagaacacg gtaagcttaa agaggagaaa tgatgaaaat
     6601 aagctttatt atcgcaactt taaattcagg aggcgctgag cgtgttttag taaccttagt
     6661 taatgcactt tgcaaagagc atgaagtaag tattattaaa tttcatgcag gagaatcttt
     6721 ttataagctt gaaaatgaag ttaaagttac aagtttagaa caatttagat ttgatacgct
     6781 ttatcataaa atcgcaagtc gttttaagaa attttttgct ttaagaaagg ctttgaaaga
     6841 aagtaaggct gatgttttta tttctttttt ggatacgact aatattgctt gtattgctgc
     6901 gaaaataggg tttaaaactc cactcattat aagtgagcat agcaatgaag cgtatttaaa
     6961 acctaaaatt tggcgttttt taagaagggt aagctatcct ttttgtgatg ctttaagtgt
     7021 gcttggaagc agtgataagg tgtattatga aagatttgta aaaagggtta ggcttttatt
     7081 aaacccttgt cattttagcg atgaaattcc ttttgattct agttttgaaa aggaaaattt
     7141 ggttcttttt atagggcgtt tagatcacaa caaaaaccct gcaatgtttt taaaagctat
     7201 agcgcatttg gataaaaatt tgcaagaaaa ttataaattt gttatagcag gagatggaga
     7261 gttaaggcaa gaacttgaat acaaggtaaa atctttagga ataaaagttg attttttagg
     7321 acgagttgaa aatgtcaaga ctctttatga aaaagcaaaa gtgctttgtc tttgttcttt
     7381 tgtagagggt ttgccaacgg ttttaattga aagtttgtat tttgaggttt gtagaatttc
     7441 aagttcttat tataatggtg ctaaggattt aatcaaagat aatcatgatg ggcttttgat
     7501 aggttgtgat gatgaaatag cacttgctaa aaaacttgaa cttgttttaa ataatgaaaa
     7561 ttttagaaaa gaacttgtaa ataatgccaa acaaaggtgt aaagactttg aaatttctca
     7621 tatcaaagaa gaatggctta agcttatagc tgaggttaaa aatgcctaaa ctttctgtta
     7681 tagtaccaac ttttaatcgt caagttttac tagaaaaggc tattaaaagc atacaaaatc
     7741 aagattttaa agatttagaa attattgtaa gcgatgataa ttctagcgat gatactaaaa
     7801 gtgtggtgca aaatttacaa aaagatgatg atcgcattaa gtatttttta aatcaaaatt
     7861 acaaacaagg cccaaatggc aataaaaata atggcttaga tcaagcaagt ggcgagtttg
     7921 taactttttt agatgatgat gatgaacttt tatctgaggc tttaagcacc ttgatgcaaa
     7981 aagcaaatga gggttatgct catgtttttg gaaattgttt gatagaaaaa gaaggaaatt
     8041 taagcaagga atttagcggc aagggcttgg aaaaagatag tgaaatttct aaaaaagatt
     8101 ttttaatggc taaatttagc ggagagtttt tttctgtttt taaaaaatct ctacttgaga
     8161 accagcgttt taatgaagaa ttttatggca atgaagccac gctttgggta aatttataca
     8221 aggaaaaaag tttttatatc cataaggctt ttaggattta taggattttt aggcaagata
     8281 gcgtgacttt gggggcgagt aaaaatgctc atagggtata tttgggatat ttagagcttg
     8341 ctaaaatttt agaaaatgaa cttagaatga gtaaggataa agattataaa aaaacttgtg
     8401 cgagttatta taaaatggca gcttattatg caaaacttgc aaaaaattat aaagcccttt
     8461 ataaatgttt gtttaaaagc ctaagtataa aaatcaacgc tcctgctttg atattactca
     8521 ttttaagtat aattccaaat aatatgattg aaaaattatc aaaaattcgg gtggctttat
     8581 gcaaaaatta ggcattttta tttattcttt aggaagtggt ggtgctgaaa gagttgtggc
     8641 gactttattg cctattttaa gtttgaaatt tgaagtgcat ttgatcttga tgaatgataa
     8701 aatttcttat gaaattccag agtgtcaaat tcatttttta gaatgttcaa aacctagtga
     8761 aaatcctatt ttgaaatttt taaaactacc ttttttggct ttaaaataca aaaaactttg
     8821 cagcaatttg ggtattgata cagaatttgt ttttttaaat cgacctaatt atatagcctt
     8881 aatagcaaga atgtttggaa ataaaacccg ccttgtgatc aatgaatgca ctacgccaag
     8941 tgtgatgtat gcgaaaaata attttaattc tttggcaaat aaatttctaa tttctttact
     9001 ttatccaaga gctgatttaa tcttgcctaa ttctaaggga aatttagaag atttagagca
     9061 aaattttagt ataaaaccaa aaaaatgtga aattttatac aatgccatcg atttagaaaa
     9121 catagagcaa aaagctcttg aagatatagc tttaaaagat aaatttattt taagtgtggg
     9181 taggcttgat aaaggtaaaa atcatgcttt attaattcgt gcttatgcga gattgaaaac
     9241 agatttaaag cttgtgattt taggtgaagg tgtgcttaag gatgagcttt tagctttgat
     9301 taaagaatta aatttggaag aaaaggtttt gcttttagga tttgataata atccttataa
     9361 atacatggct aaatgcgaat tttttgcttt tgcttctgtg tttgaaggtt tttcaaatgt
     9421 tttaatcgaa agtttggctt gttcttgtgc ggtggtttgc actgatcata aaagtggtgc
     9481 aagagagctt tttggcgatg atgaatttgg acttttagta gaagtagata atgaaaactc
     9541 tatgtttcag ggtttaaaaa ctatgcttga agacgataaa ttaagaaaag cgtataaaaa
     9601 caaagctaaa actagggcta aagcctttga taaagtaaaa attgcacgcg atgctttgaa
     9661 atatttatta ggataaaaga tgttgaaaaa agagtattta aaaaaccctt atttagtttt
     9721 gtttgcgatg attgtattag cttatgtttt tagtgtattt tgcaggtttt attgggtttg
     9781 gtgggcaagt gagtttaacg agtatttttt caataatcaa ttaatgatca tttcaaacga
     9841 tggctatgct tttgctgagg gcgcaagaga tatgatagca ggttttcatc agcctaatga
     9901 tttgagttac tatggatctt ctttatccgc gcttacttat tggctttata aagtcacacc
     9961 tttttctttt gaaagtatca ttttatatat gagtactttt ttatcttctt tggtggtgat
    10021 tcctattatt ttactagcta atgaatacaa acgtccttta atgggctttg tagctgctct
    10081 tttagcaagt atagcaaaca gttattataa tcgcactatg agtgggtatt atgatacgga
    10141 tatgctggta attgttttac ctatgtttat tttatttttt atggtaagaa tgattttaaa
    10201 aaaagacttt ttttcattga ttgccttgcc gttatttata ggaatttatc tttggtggta
    10261 tccttcaagt tatactttaa atgtagcttt aattggactt tttttaattt atacacttat
    10321 ttttcataga aaagaaaaga ttttttatat agctgtgatt ttgtcttctc ttactctttc
    10381 aaatatagca tggttttatc aaagtgccat tatagtaata ctttttgctt tattcgcctt
    10441 agagcaaaaa cgcttaaatt ttatgattat aggaatttta ggtagtgcaa ctttgatatt
    10501 tttgatttta agtggtgggg ttgatcctat actttatcag cttaaatttt atatttttag
    10561 aagtgatgaa agtgcgaatt taacacaggg ctttatgtat tttaatgtta atcaaaccat
    10621 acaagaagtt gaaaatgtag attttagcga atttatgcga agaattagtg gtagtgaaat
    10681 tgttttcttg ttttctttgt ttggttttgt atggcttttg agaaaacata aaagtatgat
    10741 tatggcttta cctatattgg tacttgggtt tttagcctta aaaggggggc ttagatttac
    10801 catttattct gtacctgtaa tggctttagg atttggtttt ttattgagcg agtttaaggc
    10861 tatattggtt aaaaaatata gccaattaac ttcaaatgtt tgtattgttt ttgcaactat
    10921 tttgacttta gctccagtat ttatccatat ttacaactat aaagcgccaa cagttttttc
    10981 tcaaaatgaa gcatcattat taaatcaatt aaaaaatata gccaatagag aagattatgt
    11041 ggtaacttgg tgggattatg gttatcctgt gcgttattat agcgatgtga aaactttagt
    11101 agatggtgga aagcatttag gtaaggataa ttttttccct tcttttgctt taagcaaaga
    11161 tgaacaagct gcggctaata tggcaagact tagtgtagaa tatacagaaa aaagctttta
    11221 tgctccgcaa aatgatattt taaaatcaga cattttacaa gccatgatga aagattataa
    11281 tcaaagcaat gtggatttat ttctagcttc attatcaaaa cctgatttta aaatcgatac
    11341 accaaaaact cgtgatattt atctttatat gcccgctaga atgtctttga ttttttctac
    11401 ggtggctagt ttttctttta ttaatttaga tacaggagtt ttggataaac cttttacctt
    11461 tagcacagct tatccacttg atgttaaaaa tggagaaatt tatcttagca acggagtggt
    11521 tttaagcgat gattttagaa gttttaaaat aggtgataat gtggtttctg taaatagtat
    11581 cgtagagatt aattctatta aacaaggtga atacaaaatc actccaatcg atgataaggc
    11641 tcagttttat attttttatt taaaggatag tgctattcct tacgcacaat ttattttaat
    11701 ggataaaacc atgtttaata gtgcttatgt gcaaatgttt tttttgggaa attatgataa
    11761 gaatttattt gacttggtga ttaattctag agatgctaaa gtttttaaac ttaaaattta
    11821 agggttgaaa atgagaatag gatttttatc acatgcagga gcgagtattt atcattttag
    11881 aatgcctatt ataaaagcgt taaaagatag aaaagacgaa gtttttgtta tagtgccgca
    11941 agatgaatac acgcaaaaac ttagagatct tggcttaaaa gtaattgttt atgagttttc
    12001 aagagctagt ttaaatcctt ttgtggtttt aaagaatttt ttttatcttg ctaaggtttt
    12061 gaaaaattta aatcttgatt ttattcaaag tgcggcacac aaaagcaata cttttggaat
    12121 tttagcagca aaatgggcaa aaattcctta tcgttttgcc ttagtagaag gcttgggatc
    12181 tttttatata gatcaaggtt ttaaggcaaa tttagtgcgt tttgttatta atagtcttta
    12241 taaattaagt tttaaatttg cacaccaatt tatttttgtc aatgaaagta atgctgagtt
    12301 tatgcggaat ttaggactta aagaaaataa aatttgcgtg ataaaatctg tagggatcaa
    12361 tttaaaaaaa ttttttccta tttatgtaga atcggaaaaa aaagagcttt tttggaaaaa
    12421 tttaaacata gataaaaaac ccattgtgct tatgatagca agagctttat ggcataaggg
    12481 tgtaaaagaa ttttatgaaa gtgctactat gctaaaagac aaagcaaatt ttgttttagt
    12541 tggtggaaga gatgaaaatc cttcttgtgc aagtttggag tttttaaact ctggcgcggt
    12601 gcattatttg ggtgctagaa gtgatatagt cgagcttttg caaaattgtg atatttttgt
    12661 tttgccaagc tataaagaag gctttcctgt aagtgttttg gaggcaaaag cttgcggtaa
    12721 ggctatagtg gtgagtgatt gtgaaggttg tgtggaggct atttctaatg cttatgatgg
    12781 actttgggca aaaacaaaaa atgctaaaga tttaagcgaa aaaatttcac ttttattaga
    12841 agatgaaaaa ttaagattaa atttagctaa aaatgccgcc caagatgctt tacaatacga
    12901 tgaaaatata atcgcacagc gttatttaaa actttatgat agggtaatta agaatgtatg
    12961 aaaaagtttt taaaagaatt tttgatttta ttttagcttt agtgctttta gtgctttttt
    13021 ctccggtgat tttaatcact gctttacttt taaaaatcac tcaaggaagt gtgattttta
    13081 cccaaaatcg tcccgggtta gatgaaaaaa tttttaaaat ttataaattt aaaaccatga
    13141 gcgatgaaag agatgaaaag ggtgggttat taagcgatga attgcgtttg aaagcttttg
    13201 gaaaaatcgt tagaagctta agtttggatg agcttttgca actttttaat gttttaaaag
    13261 gggatatgag ttttgttgga cctagacctc ttttggttga gtatttgcct ctttacaata
    13321 aagagcaaaa attgcgtcat aaagtgcgtc caggtataac aggatgggcg caggtaaatg
    13381 gtagaaatac tatttcttgg cagaaaaaat tcgaacttga tgtgtattat gtgaaaaata
    13441 tttctttttt gcttgattta aaaatcatgt ttttaacagc tttaaaggtt ttaaaacgaa
    13501 gtggggtaag caaagaaggc catgttacaa cagagaaatt taatggcaag aactgaaaaa
    13561 atttatattt atggtgctag tggtcatggg cttgtttgtg aagatgtggc taaaaatatg
    13621 ggttataaag aatgtatttt tttagatgat tttaaaggaa tgaaatttga aagtacctta
    13681 cctaaatatg atttttttat agccatagga aacaatgaaa ttcgaaaaaa gatttatcaa
    13741 aaaatttcag aaaatggctt taaaattgtc aatcttatcc ataaaagtgc acttataagt
    13801 cctagcgcaa tcgtggaaga aaatgcagga attttaatca tgccttatgt agtgattaac
    13861 gctaaagcta aaatagaaaa aggtgtgatt ttaaatactt caagcgtaat tgagcatgaa
    13921 tgtgtgatag gggaattttc tcatgtgagt gtgggagcta aatgtgcggg taatgtaaaa
    13981 attggtaaaa attgtttttt agggattaat tcttgtgttt tgcctaattt aagtttggca
    14041 gatgatagta ttttaggtgg tggagcaact ttagttaaaa atcaagatga aaaaggtgtt
    14101 tttgtgggag tacctgcaaa aaggatgtaa attgcatttt aataacaatc ttgttgttca
    14161 ctatatagta aatccttcgc ctttggggtg gattgtcatt aatttactaa ccatatgtct
    14221 aatatgctac atatttcctt tgaaaaattc tttaaaacac aaaaaacttt ttagtcttaa
    14281 agcaaatgta aattctaaaa atagtaggat tataaaatat acaggtattg ctgctttttt
    14341 gggtggatta ataggaattt ggtataattt tgaaggtttt tatcaacttc tttttttctt
    14401 tgaattagaa aatgaaaatt taaaaacact ttggagtttg caagtatcag tttcttctgt
    14461 gataacagg
//
LOCUS       DAPOLW010000032        14216 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.032, whole genome shotgun sequence.
ACCESSION   DAPOLW010000032 DAPOLW010000000
VERSION     DAPOLW010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14216)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14216)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14216
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.032"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            218..1624
                     /gene="aspA"
                     /locus_tag="ROE18_000690"
     CDS             218..1624
                     /gene="aspA"
                     /locus_tag="ROE18_000690"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HDX3650889.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPR
                     FVRALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYFVIGADVTVTFACEGGQLQLNVFEPVVAYSLFNSVVMLEKAMYTLADKCIDGIT
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLSKEQI
                     DEILTPSNMLNPHMEAKK"
     gene            1640..2977
                     /locus_tag="ROE18_000691"
     CDS             1640..2977
                     /locus_tag="ROE18_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDX3650890.1"
                     /translation="MDIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVILGLVLGM
                     KPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWLL
                     TILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSGV
                     LEPLGWNYPTLIGIWISTTFVACMLAAFIVSLITPMDLSKDSVYQERLKAGLVKDAGA
                     VLHGEDKPGAKLSVVIFLITVLAVVLYATAISSNIKWIDPVVVSRDAAIMSFLLTAAT
                     LITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQT
                     PAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALFV
                     LPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVALGFVLAPMLI"
     gene            3085..4446
                     /locus_tag="ROE18_000692"
     CDS             3085..4446
                     /locus_tag="ROE18_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDX3650891.1"
                     /translation="MKIKVGLIFSGIACLFLTACVNQVKQNTTFENTLTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAVEESYKYDVDLENVSPKAA
                     KFIGTTLLNDNIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRVLMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEAQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKAADLFREVAIIYPKNKTIKKEAKIFKEYATKIKVKKAKKYVFVVY
                     ENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREASFANLNINGQNTNDFVDLDN
                     IVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGGWLSLATAVATAATNKADVR
                     SWRGLPKSIAIATIENDGNLEIKDPQGNILFQKSLDKNKNALVIVRSFAPYLPASVAI
                     MEK"
     gene            4456..4824
                     /locus_tag="ROE18_000693"
     CDS             4456..4824
                     /locus_tag="ROE18_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HDX3650892.1"
                     /translation="MKKNILFILMFLLSACAPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKLASDTRANDFRLEIKAKN"
     gene            4848..5471
                     /gene="lpoB"
                     /locus_tag="ROE18_000694"
     CDS             4848..5471
                     /gene="lpoB"
                     /locus_tag="ROE18_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HDX3650893.1"
                     /translation="MKKTKILGTALIGALLFSGCAQTAYTDGKASQVKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAAGGALDSMSEDVRELRDNDEFNQKTIAKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKSVTW"
     gene            5554..6891
                     /locus_tag="ROE18_000695"
     CDS             5554..6891
                     /locus_tag="ROE18_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650894.1"
                     /translation="MKKILFIGSLVMASLLYAQGSQPVEITQQDINTQNEMSDASTKD
                     ITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKSTVAVNDTDPQFAQALQNAYQKAM
                     LNLQSEFIRDAFGRIATSKIQNYEADNSTNAKEFDELPKGDKVDQILNKLTQLAGAQL
                     DKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQRRGEYDV
                     GVIAVISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRLVYDENGA
                     PIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLKDERTTGD
                     TYEEIIKQSINVNDSSTQEQTQNITNIIDKVNSKIKASASGKIRGIRTLKKWSYTSEN
                     GIEHVGAVRFYSYENLANTNEALNSKSNATKNEAKKSSSIQRSSNVVNSMDDF"
     gene            6901..8103
                     /locus_tag="ROE18_000696"
     CDS             6901..8103
                     /locus_tag="ROE18_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650895.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVITTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSGVSINSLKKSNTSVSTDNSGSNIQDNYSEQISKATKGRADTYEINSV
                     EQDANGKYTANVTIFKTTTTKKYQAPGLSADNRRSITVFDSTPDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDSSGYYEMEKALIKSGDAASDEVYKLKNMLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSLSANETALK
                     QIANRIAGDILNAIYPLKVASVENNEVIFSQSLNQGDVYECFALGKVIKDTYTKENTG
                     RVESKTGSIEITRTSPKFSYAKITEGSVKVGDICRPLSNTGSGNGYTIGRDANYQTQE
                     GGGVNLGF"
     gene            8262..8570
                     /gene="rplU"
                     /locus_tag="ROE18_000697"
     CDS             8262..8570
                     /gene="rplU"
                     /locus_tag="ROE18_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HDX3650896.1"
                     /translation="MYAIIKHSGKQYKVSVGDELKLDHFEAESKASIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            8581..8835
                     /gene="rpmA"
                     /locus_tag="ROE18_000698"
     CDS             8581..8835
                     /gene="rpmA"
                     /locus_tag="ROE18_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HDX3650897.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            8942..9994
                     /gene="obgE"
                     /locus_tag="ROE18_000699"
     CDS             8942..9994
                     /gene="obgE"
                     /locus_tag="ROE18_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HDX3650898.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDAQTNE
                     ILLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVNEYNSFVMADIPGIIE
                     GASGGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSVRLGEEFAEQIALNINELDNYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKTLRNNKKNLTI"
     gene            10099..10854
                     /gene="proB"
                     /locus_tag="ROE18_000700"
     CDS             10099..10854
                     /gene="proB"
                     /locus_tag="ROE18_000700"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDX3650899.1"
                     /translation="MKRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVT
                     SAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFD
                     SRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVI
                     LSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL
                     EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            10928..11845
                     /locus_tag="ROE18_000701"
     CDS             10928..11845
                     /locus_tag="ROE18_000701"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HDX3650900.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTPSDTKAFLSQNYPSIPIFTPSSLKDKNIIREIKDLNPDFIVVAAYGKILPKAILDL
                     APCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAILESLECDIKDK
                     NSSEVFELLANLAAKIILSTLLNFDKITPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNAKMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            11808..12461
                     /locus_tag="ROE18_000702"
     CDS             11808..12461
                     /locus_tag="ROE18_000702"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HDX3650901.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCKQIRNGKIDENFAIYALEQIN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKEVLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFAPQNTALCDIEISLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            12458..13243
                     /locus_tag="ROE18_000703"
     CDS             12458..13243
                     /locus_tag="ROE18_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HDX3650902.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSVAYQNLAYSILG"
     gene            13249..14085
                     /locus_tag="ROE18_000704"
     CDS             13249..14085
                     /locus_tag="ROE18_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HDX3650903.1"
                     /translation="MGLNKDRGLSSLISDMDTVYSKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIADIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLDQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQMLNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KL"
     gene            14146..>14216
                     /locus_tag="ROE18_000705"
     CDS             14146..>14216
                     /locus_tag="ROE18_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HDX3650904.1"
                     /translation="MFEDMHPSIMLATMAIFLAMIVI"
BASE COUNT         5231 a         1860 c         2599 g         4526 t
ORIGIN      
        1 caaaaatata ttaatttttt ttgaagtaaa taaaattttt tatattaata aaaattaaat
       61 ataaagacat aataggatat aaaaatactt aatttatcgt atttgaaagc agtttactta
      121 ttaatcaatt attaactaaa aatgcgatat cattatttta tgatttaaat caaaaatttt
      181 tgatttaaaa ttaaaatact tttatgaaag gttcaaaatg ggaacaagaa aagaacatga
      241 ttttattggg gaattggaaa tctctgatga ggtttattat ggagtgcaaa cttttagagc
      301 tgttgaaaat tttgatattt ctcatgatag attaaaagat tttcctcgct ttgttagggc
      361 tttggctaga gtaaaaaaag ctgcagctat ggcaaatcat gaattaggtc ttttggataa
      421 aaatatccaa gatgcgatta ttaaagcgtg tgataaaatt ttagaaggtg ggtattatga
      481 tcaatttgta gtagatatga tccaaggagg tgctggaaca agtacaaata tgaatgctaa
      541 tgaagttata gcaaacatag gacttgaact tatgggtcat aaaaaaggtg aataccaata
      601 tcttcatcca aatgatcatg ttaatttaag ccaaagtact aatgatgctt atcctacagc
      661 tttacacctt gccttgcatg attatttaag tgatttggca aaagctatgg aacatctaaa
      721 aaaagcttat gagagaaaag ctgaagaatt taaagatgtt cttaaaatgg gtagaaccca
      781 actgcaagat gctgtaccta tgactttagg tcgtgaattt aaaacttttg ccgtaatgat
      841 aggtgaagat atacaaagag tattagaagc tagaaaattg attttagaga tcaatttggg
      901 tggaactgct attggaacag gaattaattc tcatcctgat tatccgaagg ttgtagaaag
      961 aaaaataaga gaagtgacag gttttgaata tactgtggct gaggatttaa tcgaggcgac
     1021 tcaagatacg ggagcttatg tacaaatttc aggtgtttta aaacgtgttg caacaaaact
     1081 ttctaaagta tgtaatgact taagactttt aagtagtggt ccaaaatgtg gtcttaatga
     1141 gattaatctt ccaaaaatgc aaccaggtag ttctatcatg ccaggtaagg taaatcctgt
     1201 tattcctgaa gtagttaatc aagtttgtta ttttgttatt ggagcagacg taactgtaac
     1261 ttttgcttgt gagggtggac aattacaact taatgttttt gaaccagttg tagcatatag
     1321 cttatttaat tctgttgtaa tgctagaaaa agcaatgtat actttagctg ataaatgtat
     1381 agatggtatt accgcaaatg aaaaaatttg ttcagacttt gtctataatt cagtaggtat
     1441 agtaacagct ttaaatcctt atattggtta tgaaaattca gcttctatag ccaaagaggc
     1501 aatgaacact ggaaaaagag tggctgatat tgcgcttgaa agagggcttt taagcaaaga
     1561 acaaattgat gaaattttaa ctccatcaaa tatgctaaat cctcacatgg aagctaaaaa
     1621 atagcactta ggatttaata tggatataat gataattttg caagtaatcg tccttcttgg
     1681 ggcgattttt atcggtattc gcctaggtgg tattgctata ggttatgctg gaggattagg
     1741 tgtagttata ttagggcttg ttttaggtat gaaacctggt aatattcctt gggatgttat
     1801 tttaattatt gccgcagcta ttgcagcaat ttctgctatg caacaagcag gtggacttga
     1861 ttacatggta agggtgacag aaaaaatttt aagatcaagt cctaaattta taaattattt
     1921 agctccagct tgtgggtggt tgcttacaat tttagcagga acaggaaatg cggtattttc
     1981 tttaatgcct gttgtagttg atgttgcaaa atctcaaaac ataaaaccta gtgttccact
     2041 ttcattaatg gttgtttctt cgcaaattgg aatcactgct tctcctgtaa gtgcagctgt
     2101 ggtttatatg agcggagttt tagagccact tggatggaat tatccaactt taattggaat
     2161 ttggattagc acaacttttg tagcttgtat gcttgcagct tttatagtga gtttaatcac
     2221 tcctatggat ttgagtaagg atagtgttta tcaagaacga ttaaaagcag gacttgtaaa
     2281 ggatgcagga gctgttttgc atggcgaaga taaaccaggt gctaaacttt cagtggtaat
     2341 tttcttgatc actgttttgg cagttgtact ttatgcaacc gcaatttcaa gtaatattaa
     2401 atggattgat cctgttgtgg tttcaagaga tgcagctatt atgagctttt tacttactgc
     2461 agcaactttg atcacttggc tttgtaaagt tgaaccaggt aaaattcttg acactagtgt
     2521 atttaaaagc ggtatgactg cttgtgtttg tgtttttggt gtagcatggc ttggaaatac
     2581 ttttgttgca ggacacgaag cttctatcaa agaagtagca ggcgactggg ttaaacaaac
     2641 ccctgctatg ttagcagttg catttttctt tgcaagtatg cttttatatt ctcaagcagc
     2701 aaccgcaaag gccattgtac ctgtaattat cactgcttta ggaatttcag cagcaaatcc
     2761 gcatgattct tatatgcttg tagcttgttt tgcagcagtt tcagcacttt ttgtacttcc
     2821 aacttatccg actttgttag gtgcagtgca aatggatgat acaggaacga ctagaattgg
     2881 taaatttata tttaatcact cattctttat accaggggtt ttagctattg caattgctgt
     2941 agcattaggc tttgtattag ctcctatgct tatttaaatc aaaccctagg tttttctctc
     3001 ctagggttaa aattttttca ttagttttta agtatatact acgctataat attcattttt
     3061 aattttcttt aagaaaggaa tttaatgaag ataaaagttg ggttgatttt ttcaggtatt
     3121 gcttgccttt ttttaacagc ttgtgttaat caggttaaac aaaatacaac atttgaaaat
     3181 actttaacac aaaaatattg tggtgatgat tttttcaatc aaaatttaga aaaaattaaa
     3241 aaaaatgatg atgtcattta tacaggatta aatgcaggtt tgattgctag aaattgtggt
     3301 gattttaata aaagtaatgt attttttgat gctgtagaag aatcttataa atatgatgtg
     3361 gatttagaaa atgtaagccc taaagcagct aaatttattg gtacaacctt gcttaatgat
     3421 aatatagtag attatgatgg ttctttatat gaaagaatta tggttaatat atataaagct
     3481 ctaaactata tggaagaaga tgattatgaa aatgcaagag ttgagtttaa tcgtgtttta
     3541 atgcgtcaag ataaggcaaa agaatatttt gctaaagaaa ttgaaaaaaa tcgtgctgat
     3601 ttagataagg caaaagaaga taaaaattat gataaaaata tgaatgaaaa ttcaaaagtt
     3661 atagaagcgc aatatgacaa tttatttaaa gaatttgata caacaaaaaa tttcataaat
     3721 ccttatgcga cttatcttgc ttcaatattt ttctttatgg ataaagatta tagaaaagct
     3781 gcagatttat ttagagaagt agctattatt tatccaaaaa acaaaactat caaaaaagag
     3841 gctaaaattt ttaaagaata tgccacaaaa ataaaagtca aaaaagctaa aaaatatgtt
     3901 tttgtagttt atgaaaatgg atttggtgta gttaaggatg aatttgcttt aaccttacct
     3961 tttatagtgg ataaaaaaat tattagcaca aatattgctt tgcaaacctt gaaaaaaagg
     4021 gaagcttctt ttgcaaattt aaatataaat ggtcaaaata caaatgattt tgtagattta
     4081 gacaatattg tcgctactga atttaaaata aatatgcctg caatgattgc taaagcctta
     4141 gctcaaacta taattaaaac cactttaaat gtagctgttg caaataatga ctctacaggt
     4201 ggatggctaa gtcttgcaac agcagtagca actgctgcaa ccaataaagc tgatgtgcgt
     4261 tcttggagag gtttaccaaa aagtattgcc atagcaacaa tagaaaacga cggaaattta
     4321 gaaatcaaag atccacaagg caatattttg tttcaaaaat cattggataa aaataaaaat
     4381 gctcttgtga tagtgcgttc ttttgctccg tatttacccg caagtgttgc tatcatggaa
     4441 aaataaggct aaaagatgaa aaaaaatatt ttatttattt taatgttttt acttagtgct
     4501 tgtgcaccaa gttatcaaat aaattcaaat caaaatactg taattttagg ttcaaattta
     4561 ccaaaaagtt tagtaaaaca atttcaaaag cgtataaata gcaatggtta tttagaattt
     4621 gaagtgattt tgcgcagtac ttttgctaaa gatgtaattt ataaagtaga ttggttagat
     4681 aaagatggtt ttgtgctaag agatgtttta aatgaggact atcaagccct tagaattcca
     4741 gcaggacaag aggtaattct tcgtaaactt gcatctgata caagagcgaa tgattttaga
     4801 ttagaaatta aagcaaaaaa ttaatctcat tttaggaagg ataaatcatg aaaaaaacaa
     4861 aaattttagg aacagctctt attggagctt tgctttttag tggttgtgcg caaacagctt
     4921 atacagatgg aaaggcaagt caggtaaaaa aaggcgatgc tttaaccttg ggtcttgata
     4981 gacaagattt tgaaagtgca gctgaaacta tgataaatag tatgttaagc gatcctgctt
     5041 ttgcaaatat taaaccaggt acaagaaagg ttattgctat tggtagggtt gtgaatgata
     5101 ccccgcaaag aatcgatact gaaaaactca ccgcaaaaat cacttctgca ttaagaaaat
     5161 caggtaaatt tgttctaact tcagcagttg ctgcaggcgg agcacttgat agcatgagtg
     5221 aagatgtaag agaattaaga gataatgatg agtttaatca aaaaaccata gcaaaaaaag
     5281 ggacattggt atcgcctgat ttttctcttg cgggtaaaat tagacaagat aatgtaaaac
     5341 ttagcaatgg taaaactcaa gtagaatact ttttcttact aagacttact gatttaacat
     5401 caggtttagt ttattgggaa gatgaacaaa ctattgataa aaccggttct agtaaatcag
     5461 ttacttggta aaataaaaat taatttatga ataaaatttt ttagctcaag tgtttagctt
     5521 gggctttttt tatgattttt aaaaggatac gaaatgaaaa aaatattatt tatcggctct
     5581 ttagttatgg caagtttact ttatgcacaa ggttcccagc ctgtagaaat tacacaacaa
     5641 gatataaata ctcaaaatga aatgtctgac gcaagtacta aggatattac cccaaaatca
     5701 attgaagatt tttttgaaga atttgcggat aatttcggta tagaatatgg tataaccaaa
     5761 gatggaaaaa ctttttatac aggaaaaagt actgttgctg taaatgatac tgatccacaa
     5821 tttgcacaag ctttacaaaa tgcttaccaa aaagcaatgt taaatttgca aagcgaattt
     5881 ataagagatg cttttggaag aattgctaca agcaagattc aaaattatga agcagataat
     5941 tctacgaatg ctaaggaatt tgatgaattg ccaaaaggtg ataaggttga tcaaatttta
     6001 aataaactta cacaattagc tggtgctcag cttgataagg cattaaaaga tttaggtata
     6061 gatacaaatt ctttaagcga agacagaaaa aagactttat taaagcaaga atttcttaat
     6121 aaaactatga caaatgccat aggttctatg agtggacttg ttcctgtgca aactatagtt
     6181 acacaaagaa gaggtgagta tgatgtaggt gttattgctg ttatttccaa taaaactcgc
     6241 caattagcaa aagatatggc actagcaaga cagagtgcta ttaagggtaa aggcaaggca
     6301 ataagtgagt atctgccaaa agatacaaaa ggctttttaa atgaatatgg aattcgctta
     6361 gtttatgatg aaaatggtgc acctattatt ttaagttatg gaaactgggg ttatgtagca
     6421 gatcctagca atgctaaaaa aacaaatatt ttagaagata gagccaaaga aacagcactt
     6481 actatggctg atgctgctat tatagagttt attaatacaa atttaagtct taaagatgaa
     6541 agaacaactg gtgatactta cgaggaaatc atcaaacaaa gtattaatgt taatgatagt
     6601 tccactcaag aacaaactca aaacataaca aatattattg acaaagtaaa tagtaaaata
     6661 aaagcaagcg caagcggtaa aattcgtggt attcgtactc ttaaaaaatg gagctataca
     6721 agtgaaaatg gtattgaaca tgtaggagct gtgagatttt attcttatga aaatttagct
     6781 aacacaaatg aggctttaaa ttcaaagtca aatgcaacaa aaaatgaagc taaaaaatct
     6841 tctagcatac aaagaagttc taatgttgta aatagcatgg atgattttta aaggtaaaag
     6901 atgaaaataa ttaaaattct ttttttaggc ttatttttaa gcctaagtct taatgctaaa
     6961 gttataacca caacttcaac aaaatcaagc acaggtgaag gcacaggctt gactagggaa
     7021 gatgcgataa acaatgccat tatagaagct ataggaaaaa tgagtggagt aagcatcaat
     7081 tctcttaaga aatctaacac tagcgtttca actgataatt caggttcaaa tatacaagat
     7141 aattacagcg agcaaatttc aaaagccacc aaaggtagag ctgatactta tgaaatcaat
     7201 agtgttgaac aagatgcaaa tggtaaatat acagccaatg taacgatttt taaaaccaca
     7261 acaacaaaaa agtatcaagc tccaggttta agtgcagata atagaagaag tattactgtt
     7321 tttgattcta ctccagatgc tgcaaaaaga ggtataggct cagctttgca acaaaaaatc
     7381 atttctgatt tattgcaaag tcgtaaattt aatgttttag accgtgattc tagtggctat
     7441 tatgaaatgg aaaaagcttt aatcaaaagt ggcgacgcag ctagcgatga agtttataaa
     7501 cttaaaaata tgttagcaac agattatatt ttattgtttt ctatttcagg acttgaaggt
     7561 aaacaaaaaa caagcaattt aacaggaaaa agcaaaactg aaattgaagt tatcgtagat
     7621 tatcgtgtgc ttttatttgc tacaagacaa attaaatttt ctaatacttt aagcatgaaa
     7681 gtcaatctta aagacaatag tcttagtgcc aatgaaaccg cactcaaaca aattgcaaat
     7741 cgtatagcag gagatatttt aaacgcaatt tatcctttga aagttgcaag tgttgaaaac
     7801 aatgaagtaa tattttctca aagcttaaat caaggtgatg tttatgaatg ttttgctctt
     7861 gggaaggtta taaaagatac ttatacaaaa gaaaatacag gaagagtaga aagcaaaaca
     7921 ggaagtattg aaatcactcg cacaagccct aaattttctt atgcaaaaat cacagaaggt
     7981 agtgtaaaag tgggcgatat ttgcagacct ttaagtaata ctggtagtgg aaatggctac
     8041 actataggtc gtgatgcaaa ttatcaaacc caagaaggcg gcggagtaaa tctaggcttt
     8101 taaattttta gagtttgatt tttctcaaac tctaaactct ttcttaaatt catcaaaaat
     8161 taaagaaaaa ttttgtaaaa tcgaaatttt attaaaccac taaagctttt aaatccgtta
     8221 ttacggtgct ttatggtact accaatttat aaggaaaagc aatgtatgct attatcaaac
     8281 acagcggaaa gcaatacaaa gtaagtgttg gcgatgagct aaaactagat cactttgaag
     8341 ctgaaagcaa agcaagtatt gaagtaagcg aagttcttgc tatcaatgat aaagaattaa
     8401 aggtaggtgc gcctttcgta gcaggtgcaa aagttgtttt ggaagtgatc aatcacggaa
     8461 aagataaaaa agttgtgatt tacaaaaaaa gacgcagaaa agattctaaa ctcaaacgcg
     8521 gttttagaag acaatttact cgcgttgtag taaaagatat caaagcttaa ggagtaaaga
     8581 atggcacaca agaaaggtca aggttcaact caaaataacc gcgattccat aggtcgtcgt
     8641 ttaggtgtta aaaaatttgg tggcgagttt gttagagctg gaaatatcat catccgccaa
     8701 agaggaactg caactcatgc aggtaacaat gtaggcatgg gaaaagatca tactatcttt
     8761 gctctaattg atggttttgt aaaattcgaa agaaaagaca aagatagaaa aaaagtttct
     8821 gtatatcctg cataagtttt taggacgctt tttagcgtct tgaaaacttt aaatttataa
     8881 atttaacttc ttttatttac tcaaatttag ctttataaat ttaaagtcaa aggcaattta
     8941 aatgtttatt gatagtgtta aaattacttt agcttcaggc gatggtggca aaggtgctgt
     9001 aagttttcgc cgtgaaaaac atgttccact tggtggccct gatggaggag atggtggaaa
     9061 tggtggtgat attattttcg tatgtgataa taatacccac actcttgtaa atttcaaagg
     9121 caaaagagaa ttacgcgcgc aaaatggtgc tggtggaatg ggacgcaata aaaatggcaa
     9181 aaagggtgaa aatttagaac ttatagtgcc cgaaggaacg caagttatcg atgcacaaac
     9241 caatgaaatt ttacttgatc ttaccaaaga aggacaaaga gagctttttt taaaaggtgg
     9301 aaaaggtgga cttggcaaca cccattttaa acacgccacc aatcaacgcc ccgattacgc
     9361 acaacctggt ataaaaggag aaagtcgctt agtcagactt gaacttaaac ttattgccga
     9421 tgtagggctt gtgggctttc caaatgtggg aaaatctact cttataagcg ttgtttcaaa
     9481 tgcaaaacct gaaattgcaa attatgaatt taccaccctt actccaaaac ttggacttgt
     9541 agatgtaaat gagtataatt cctttgttat ggctgatatt ccagggatta tcgaaggagc
     9601 aagtgggggt aaaggcttag gacttgcctt tttaaagcac atagaaagaa cgagcttttt
     9661 acttttcgtg ctagatccta tgaggcaaat gcctttaaaa gaacaattta tagtactaag
     9721 aaaagaactt gaaaaatttt ccaatgaact ttttgggcgt aaatttggca tcatgatttc
     9781 aaaaagtgat agtgttcgtt taggagagga atttgctgag caaattgctt taaacattaa
     9841 tgagttagac aattatctca aagaaataaa taatccacaa agctttttaa tcaaagtctc
     9901 aagccttgaa aaaacaggac ttaaagaact taaattcatg cttttagaag aaattaaaac
     9961 tttaagaaat aacaaaaaaa atttaacaat ctaggaagtg ttttatatta aaaatttcaa
    10021 acactcccta ttttttcaaa aataactagt ttatatgaaa ttttggctaa aattataaaa
    10081 atttttcaag gaataagcat gaaaagaata gttgttaaag tgggttctca tgtgattagc
    10141 gaagaaaaca ctttaagttt tgagcgtctt aaaaatttag tcgcattttt agctaaactc
    10201 atggaaaaat atgaagtaat tttagtaacc tcggcggcta tttcggcagg acacaccaaa
    10261 ctagatatcg atagaaaaaa ccttattaat aaacaagttt tagctgctat tggacaacct
    10321 tttttaatca gtgtttataa cgagctttta gccaaattta acaaactagg cggacaaatt
    10381 ttacttacag gcaaggattt tgactctaga aaagctacta aacacgcaaa aaatgctatc
    10441 gatatgatga taaatttagg aattttgcct attatcaatg aaaatgacgc tacagctata
    10501 gaagaaattg tctttggtga taatgatagt ttaagtgctt atgctacgca tttttttgat
    10561 gcggatttgc ttgtgatttt aagcgatatt gatggatttt acgataaaaa tcctagtgaa
    10621 tttagtgatg caaagcgttt agaaaaaatc actcatatta aagaagaatg gctacaagca
    10681 accataaaaa caggtagtga gcacggaaca ggtggtatag taaccaaact taaggcagct
    10741 aaatttttac ttgaacacaa taaaaaaatg tttttagcaa gtggctttga tttaagtgtg
    10801 gcaaagacat ttttattaga agataaacaa ataggtggaa ctttgtttga gtgattaatt
    10861 tattaaattc tcttttaaaa tcaaataagc tataattaaa acttttaatt tcacacaaag
    10921 cgaaaaaatg aaaaaaatta tttttatggg cactccatct tacgcaactt gtattttaaa
    10981 agcactagta gaaaatgaaa attttaaact cgtagcactt tttactcagc ctgataaagc
    11041 cgtaggtaga aagcaaattt taactccaag tgatactaag gcttttttaa gtcaaaatta
    11101 tcctagtatt cctattttta ctccaagttc tttaaaagat aaaaatatta taagagagat
    11161 taaggattta aatcctgatt ttatcgtggt tgctgcctat ggaaaaattt tacctaaagc
    11221 cattttggat ttagcgcctt gtgtgaattt gcacgcttct ttacttccaa aataccgtgg
    11281 tgccagtccg atccaaagtg cgattttaaa caaagatgaa aaaagtggag tttgcaccat
    11341 gctcatggaa gaagggcttg acacaggtgc tatacttgaa agcttagaat gtgatataaa
    11401 agataaaaat tcaagtgaag tttttgaact tttagcaaat ttggccgcta agatcatcct
    11461 ctctactctt ttaaatttcg ataaaatcac ccctaaaaaa caagaggaaa gtctagcaac
    11521 actttgtaga aaaatcaaaa aagaagatgg gcttataaat ttgcaaaatg caagagaact
    11581 ttatcaaaaa tatctagctt tcaccccttg gcctggagtt ttcttggaaa atggacttaa
    11641 attcttagaa cttgaacttg tggatgaatt aaaacaaaat gctaagatgg gtgaaatttt
    11701 agaattagaa aaagaaagtt ttttgcttgc ttgcaaacaa ggagttttgc gtattaaaaa
    11761 acttcaagaa agtggaaaaa aagctcttga tggtaggact tatttaaatg gaaaaaggct
    11821 taaaagtgaa gatagtttgt gttgaaagta tagactcaac tcatcttttt ttatgcaagc
    11881 aaatacgcaa tggaaagatt gatgaaaatt ttgctattta tgctttagaa caaataaatg
    11941 gagttggaag tagggaaaat tcttggcaga gctctaaagg aaatttacat ctttctttct
    12001 gtattaaaga agaagacttg ccaaaagatt tacctttagc ttctgtgagt atttattttg
    12061 cttatttact taaagaagtt ttacaagaaa aaggttctaa aatttggctt aaatggccta
    12121 acgatctata tttagatgat aaaaaagctg gaggggttat aagtgctaaa atttcaaatt
    12181 ttatcatagg cggtatgggt ttaaatctga aatttgcacc ccaaaataca gctttatgcg
    12241 atatagaaat ttcgcttaaa gatttagtga gtgagttttt gcaaaaagta gaaaaaaaaa
    12301 ttttatggaa gaatattttt agcaagtata tgttagaatt cgaaaaatca agaaaattta
    12361 gcgtccatca tgaaggtaaa gttttttcac ttgaaaattc ttttttgtat gaagatggtt
    12421 caattttact aggcgataaa agggtgtata gtttaagatg agcgaaatta ttacaatagc
    12481 aaatcaaaaa ggtggagtag gaaagactac aacagcagta aatttagccg cttctttggc
    12541 tgtggctgaa aaaaaagtac ttttgattga tgttgatccg caagctaatg cgactacagg
    12601 acttggtttt aatcgtaata attatgagta taatatttac catgttttta taggaagaaa
    12661 aaagctttca gatattattt taaaaacaga attgccacaa cttcatttag ctccttcaaa
    12721 tataggtctt gtaggtatag aacaagagct tgctaaaggt gaaaataatg agaaaaaaat
    12781 gctgcttaaa aatcaaattc aagaagtgat tgatgagtat gattttatta ttattgattc
    12841 tccgcctgct cttggaagta ttactataaa tgcttttgca gcaagtgata gtgtaattat
    12901 ccctatacag tgtgaatttt atgcgctcga gggtgtagct atggttttaa atacaattaa
    12961 aattatcaaa aaaactatta attctaaact cagggttcgt ggatttttac cgacaatgta
    13021 tagctctcaa aataatcttt ctaaagatgt tgtagatgat ttgaaacaaa attttaaaaa
    13081 acaacttttt actattaatg gaaacgaaga tgactttatt gtgatccctc gcaatgtaaa
    13141 acttgcagaa agtccaagtt ttggaaagcc tataattctt tatgatatta aatcaccagg
    13201 ttctgttgct tatcaaaatt tggcgtattc tatattagga taattataat ggggttaaat
    13261 aaagataggg gtttaagtag tttaatcagt gatatggata ctgtttatag taaagaattg
    13321 ggttttgata aaaatcaaag cactatgata gaaattgatc aaatttcacc caatccattt
    13381 cagccaagaa agaattttga tcaagaagct ttagatgaac ttgctaattc tatcaaagaa
    13441 tttggactta ttcagcctat tattgtattt aaaaaaaata ataaatttat tttaattgct
    13501 ggggaacgtc gcttaagagc agtgaaagca ttaggaaaaa aagaaattct agcttttatt
    13561 gctgatattg atgagaataa gcttagagaa ttggctctta ttgaaaatat acaaagagag
    13621 aatttaaacc ctattgagct tgctaattct tataaggatt taatgcaagt tcataaaatt
    13681 actcaagaga atttagcaga acttattcat aagtctcgta ctcaaataac aaatacttta
    13741 agacttctga atttagatat tagaactcaa gagttgattg cttctggaaa aatttctcag
    13801 ggtcatgcta aagttttggt tggtttagat caaaaagatg aaaaaatgtt ggttgatagc
    13861 ataataggtc aaaaacttaa tgttagagat actgaaaaaa tagttaaaaa aataaaaaat
    13921 aatgaaagct tacctaatca agaatttgaa gatgaaataa aaaaattaaa acaaatgcta
    13981 aatcgctttg gatttgactg caaaaataaa aataatgatt ttgtaattca tttagaaaat
    14041 attgataaaa ttaaaaaatt aatcaaaatg cttgaaaagc tttaaccaaa atcttagctt
    14101 ttttatggta aaatagtcct tcaaaaattc taaccaagga gaattatgtt tgaagatatg
    14161 catccttcca taatgcttgc tactatggct atttttttag ctatgatagt tatttt
//
LOCUS       DAPOLW010000033        14149 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.033, whole genome shotgun sequence.
ACCESSION   DAPOLW010000033 DAPOLW010000000
VERSION     DAPOLW010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14149)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14149)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14149
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.033"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..312
                     /locus_tag="ROE18_000706"
     CDS             <1..312
                     /locus_tag="ROE18_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650905.1"
                     /translation="GFFTYYSTKQIAEYKRIASEYAYKQRLNQTYKGYETQIKETENE
                     ELKNQLLKIMLDSAENNPSKILDKKGEIPSLSLIEKMLDILPFNTLKRLQDKIKAKIE
                     K"
     gene            complement(395..1096)
                     /locus_tag="ROE18_000707"
     CDS             complement(395..1096)
                     /locus_tag="ROE18_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HDX3650906.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLKEQGVKEDEINYNSPNIID
                     RLSDPYSNDTQAAYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDNYDIEY
                     LYTKLNEIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(1093..2295)
                     /locus_tag="ROE18_000708"
     CDS             complement(1093..2295)
                     /locus_tag="ROE18_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HDX3650907.1"
                     /translation="MQKHTKIHGFAKFKLIVILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDDI
                     YAFIALRFFEALGGCAGVVIARAIVNDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESAPHLKNKKFSHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFSLSEQKFALLFGANALGFVICANINARL
                     VLKYESEKILAKALMIMFISTVILLANAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGLISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKEKK"
     gene            2398..3747
                     /locus_tag="ROE18_000709"
     CDS             2398..3747
                     /locus_tag="ROE18_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HDX3650908.1"
                     /translation="MQNLNQNEQIKCPSCGSFIDISTALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYTKALNDLKTQKIEQEKLISEQVSQKLLLEKQKFEQELLIQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQESKNLEFEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIAAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLENLAKDED"
     gene            complement(3771..4814)
                     /locus_tag="ROE18_000710"
     CDS             complement(3771..4814)
                     /locus_tag="ROE18_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDX3650909.1"
                     /translation="MKKHILLLGLCLSLSLSAKSVSDYKVGEELSDKEGVEYFKELSK
                     RPVQEWPNKNLSINDVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCH
                     MDNDGNGLPGTKKYVIPFLNILNNYPRLDIETMKIISVEDRIRGMGGTDSHRFPNDSK
                     EMKAILAYFKWLKEAYGIKDGVKLEGDFFAKMNFPNRPADPVRGKKLFEENCVACHGE
                     RGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDE
                     DALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVK
                     YGPWKNPNHFPGE"
     gene            complement(4992..5639)
                     /locus_tag="ROE18_000711"
     CDS             complement(4992..5639)
                     /locus_tag="ROE18_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HDX3650910.1"
                     /translation="MDLKSLENNRLYILKRLGILKFLSIIEALLVGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLAQKELQINALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEISKANKNPSFENEEQIYIK
                     LTDKNFTLNHIFSKENHYLITTLSNPFFIDIKKDFENNFKNLEENLNSIKNKLFK"
     gene            complement(5639..7447)
                     /gene="typA"
                     /locus_tag="ROE18_000712"
     CDS             complement(5639..7447)
                     /gene="typA"
                     /locus_tag="ROE18_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HDX3650911.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGSDENPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS"
     gene            7582..7905
                     /locus_tag="ROE18_000713"
     CDS             7582..7905
                     /locus_tag="ROE18_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650912.1"
                     /translation="MSKPLNEEIFVEFKSDLAERKNEVLLQVLELLETFRSDENEKMA
                     RISSELTEILENEENLEKILNAKNLEELLNILTALNEDKMIKVYEDSYLKEKFPNVMV
                     DKFLK"
     gene            7921..9714
                     /locus_tag="ROE18_000714"
     CDS             7921..9714
                     /locus_tag="ROE18_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HDX3650913.1"
                     /translation="MMSNLAPQNDVLNLTPSKTSTTSSSFSKTSKNKEHESSDSKNST
                     QDDTESFLNSLLNSINETNEFLPDHMKISQKEVVNEAMSRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTT
                     HTTSTHSMQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDAKNT
                     LKNIKNDEFAKNLTEELNIKDKKNQDNLNKESKDLNKDFNKELNKNQEKNNLNQENIQ
                     DQNKNLKNNDQNLNLDKNLNKEIVKDTQKLVSNLTQKDFNLNKEPKNNNKENKDIKQN
                     FFDQKLNFENLNKTQVVQNKENNANFNNNTTNKETFTQEQTKTHSENVDKNSLDELNS
                     LVKDLNKVTQNNARNITPKETLQYFSQDLKEAVDQYKAPITKLSITLNPNNLGEVEVT
                     LIQRGNNLHINFNSNANAMNLFIQNQAEFKNSLVNMGFTGLEMNFSDQGKREQNQNQG
                     KNRSGYGFKDALDGKNESEKVNLELVLAKYF"
     gene            9768..10652
                     /locus_tag="ROE18_000715"
     CDS             9768..10652
                     /locus_tag="ROE18_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HDX3650914.1"
                     /translation="MISSSDWNLNTTATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDAKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGDKEEKA"
     gene            10656..12293
                     /locus_tag="ROE18_000716"
     CDS             10656..12293
                     /locus_tag="ROE18_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HDX3650915.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKQGVEKNVFTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(12297..>14149)
                     /locus_tag="ROE18_000717"
     CDS             complement(12297..>14149)
                     /locus_tag="ROE18_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HDX3650916.1"
                     /translation="LETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKPAKTKTYE
                     RKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLKASINLTE
                     NFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSIKEIELEI
                     AKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIYRILGKEG
                     RNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHTGYCIANN
                     LKLSQIGLKTTGSIKTNTDENINLEITNFDISDDAIKSGIVNVQASNIKVNGNVGATK
                     LYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKNVFVENCM
                     GGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSDTECENLK
                     NLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPSAIEMKFSNLYHDIIKKY
                     NHLSISYKKLVKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPNTNTNLEL
                     KHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
BASE COUNT         5044 a         2143 c         2253 g         4709 t
ORIGIN      
        1 ggatttttta cttattattc tacaaagcaa attgcagaat ataaaagaat agcaagtgag
       61 tatgcttata aacaaagatt aaatcaaact tataaagggt atgaaactca aataaaagaa
      121 acagagaacg aggaactaaa aaatcaactt ttaaaaatta tgctagattc tgcagaaaat
      181 aatccaagca agatacttga taaaaaaggt gaaattccta gtttaagctt gattgaaaaa
      241 atgcttgata ttcttccatt taatacattg aaaagacttc aagataaaat taaagcaaaa
      301 atagaaaaat aattataaaa aactatttaa aaaccgcacg aaaaaattcc atagtgccaa
      361 gctaagcctt aaagcttagc ttgaaatttt atcatcagtc ttttaagtag tattctatag
      421 tagaaaccac tcttatagtt ttgatataag gggtgttttt atctctgttg ctgatgctaa
      481 attgtccttg agaagccttt tttatcttgc ctagatggct gtttgagtct tgtgcgaatt
      541 ttattgctgc atttctagcg ttgagcgttg cttcttctat catttgtggt tttatctcat
      601 ttagcttggt gtaaaggtat tctatgtcat aattatcgat tttcgttact atgccaaatt
      661 ttgcaagact tgaaatgttt tctagtatgc tttttccaag ctttacattt tgcgtataga
      721 tgagtaaatt cgcagtgcct atgtatcggt atgcagcttg agtgtcgttg ctataaggat
      781 cacttaaacg atctatgata tttggcgagt tgtagttgat ctcatcctct tttacgcctt
      841 gttcttttaa aaatttgatg atattttctt tatcttgttc tagttcttcg tataaatttg
      901 taagattgtt gtttgatctt gtgaatttta taggaagtat caaagtatcc gcttcgactt
      961 ctttttgact taaacccttt acgcttacac ttctttcaag tgttttaaaa tcgcttaaag
     1021 ccttgttaaa tccaaaagct agaatcaaac ttgctaaaac tatggctaaa gccataaaga
     1081 tattatttgt tttcattttt tctcctttat tttgattaga aaatatatca tatttgcaac
     1141 caatacgcaa gcacacatta caaaagcaag gattatcggc gtatttgcgt taatagcccc
     1201 aaccacaaaa gaaataagcc ctgcaaaacc aaattgcacc gttccaagca ccgcagaagc
     1261 agttccgcta tgttctttaa accttgccat agccaaagtc gtggtattgg gtgcgatgaa
     1321 accaagcata gcgatacttg taaaaatact aagttcaaaa agcaagaaat ttggatgaaa
     1381 aaaggcattt gcaagtaaaa tcacagtcga tataaacatt atcatcaaag cttttgccaa
     1441 aattttttcg ctttcgtatt ttaaaaccaa tcttgcattg atatttgcac agatgacaaa
     1501 acctaaagca tttgccccaa aaagcaaagc aaatttttgc tcacttaagc taaaaaactg
     1561 cgtaaaaaca aagcttgatc ctgtgatata agcaaacatc gccgccaaag caaaagaagc
     1621 acatagtata taaactaaaa agcgtttatc gcttaaaaca aatttgtagc ttttcatcgc
     1681 ttcatgatgg gaaaattttt tgtttttaag atgaggtgcg gactctttta aaccaaaaag
     1741 tatcatcaaa aaaagtaaaa ttcctaaagc aaacaaagtc gcaaaaatac tatgccatga
     1801 aaaatactct agcaaaattc ccccaaaagt tggcgaaagc ataggagcaa gagaactaaa
     1861 aaccatcatc aaagcaaaaa tccctgcagc ttctttgatc tcaaacaagt cattgacaat
     1921 agcccttgcg ataaccacac ctgcacaacc cccaagtgct tcaaaaaatc tcaaagcgat
     1981 aaaagcataa atatcatcga taatcacaca aaacaaactc gaaacgatga agaaaaatat
     2041 ccccaccaaa gctggaattt tacgcccaaa aatatcactt aaaggcccat atataagctg
     2101 tcctaaagca aaagcgataa aaaaacttgc gatactaagt tgggttaaaa aagaattagt
     2161 ttgaaaactt tgctccacat gagaaagtgc aggcaaatac atatctgtag aaagtggtgc
     2221 tatgcttgac atcaaagcaa ggataacgat gagtttaaat ttagcaaagc cgtgaatttt
     2281 ggtgtgtttt tgcatttgta atcctaatta ttctaaaaga atgattttaa caagtcaatc
     2341 ttagaataat ctttgttttt ctatgttaaa tttagggaaa aattctaagg aaattttatg
     2401 caaaatttaa accaaaatga acaaatcaaa tgcccaagtt gtggaagttt tatcgatatc
     2461 agcactgctt tatatgctca aattttagat aaagctaagc aagaaatgct aaaacaaaaa
     2521 aaagaatttg atgatgaggt aaatgctaaa agagctgaat ataccaaagc tttaaatgat
     2581 ttaaaaactc aaaagataga acaagaaaaa ctcataagcg agcaagtaag ccaaaagctt
     2641 cttttagaaa agcaaaaatt tgaacaagaa cttcttatac aaaagcaaaa tttccaaaaa
     2701 gaattcagcg agaaatttaa caaagagcat gaaaatgaaa tgaaaatcat gcaagaagaa
     2761 ctcgagaaaa aaagcaaaga acttagcgag tttttaagca taaaggctga aaatgaaagg
     2821 ctaaaaagag agcaaaaaga aaatgaagaa agattgaaat ttcaagccaa agaagaggct
     2881 tttaaagaat ttaaagaaca agaaagcaaa aatttggaat ttgaaagaga aaaaatgcgt
     2941 cttgaatttc aaaaaagtac tcaagagcaa gatcttaaat acaaagaact agaaacgaat
     3001 tttaaaagtg tagctcaaaa gctagaagac gcacaacgca ggatagaaca aggctcacag
     3061 caactccaag gcgaagcagc cgaactactc atagaagaat acatacaaag tgagtattta
     3121 agcgatgaag taaaagaagt gccaaaaggc gtaaatggag ctgattgtct gcatatagta
     3181 aaggataatt ttggaaatat ttgtggaagt attttgtatg agagcaaacg cactaaagaa
     3241 tttaataaag aatggcttga taagcttaag ctagacagca tagccgcaaa aagtgatata
     3301 gcggttttga tcacaaaaac tatgccaaaa gataaagaaa aaacgcattt taaagaagga
     3361 attttgattt gtacttttaa tgaattcaaa ggtgttttag cagtgcttag agaaagcatt
     3421 ataaacgctt ataaactcaa aaatgcttta caaaacaaag atgaaaaaaa tcacatttta
     3481 tacgaatact taaattccaa ggaatttaat acgcaaatca cttttatact caaaacttac
     3541 caaaatatga aagaagaatt agaagctgaa aaaagagctt tgcaaaatat atggaaaaaa
     3601 agagaaagag ctatagaaaa tctaagtttt aattccactg ccatagtgag ttctttaaat
     3661 gcgatattta gcgacttaca aggtggaaat ttgataggcg aagaagggat taaaagtctt
     3721 gaaaatttag ccaaagatga ggattaattt tgggctaagc ccaaaattaa tcattctcct
     3781 gggaagtgat ttggattttt ccaaggtccg tattttactt ttatgtattc tttagggtct
     3841 aaattttgtt gtggtgaagc aaaatactca ggttttaatg atggggattt gctataagct
     3901 gtatcaagtc ctgcacgatt ttctgtagtg gttataggca ttcttacaaa acctgtattg
     3961 acataagctg ctatatccag tgcatcttca tcgcttaata taggattatc tgcactcgca
     4021 ccaaaaggca tggctgattt taaaaatctt gctaaaaatg gtatcatagc catgtgtcca
     4081 ccatcaggat agataagtaa agatggatat aaatgtccgc taccttgttc gtaattatca
     4141 ttttttaccc caagtcctct ttcgccatgg caagcaacgc aattttcttc aaagagtttt
     4201 tttccacgca cagggtcagc tgggcgattt ggaaaattca tcttagcgaa aaaatctcct
     4261 tcaagcttta cgccgtcttt gatgccataa gcttctttta gccatttaaa ataagctaaa
     4321 attgctttca tttctttaga atcattagga aatctatgag agtcagttcc gcccattccg
     4381 cgaattctat cttcaacaga gatgattttc atcgtttcta tgtcaagtct tggataattg
     4441 tttaggatat ttaaaaatgg aataacatat ttttttgtcc ctggcaaacc attgccgtca
     4501 ttgtccatgt gacaggaaat acaatttact tcgttgcttg tcttttttag cttgctatag
     4561 ggtcctagag tactttctgt cttgcttaaa agctctatgc cataacgaat taaatcccct
     4621 tgcttgcctt ttggaacatc attgatgctt aaatttttat ttggccattc ttgcacaggt
     4681 cttttggaaa gctccttaaa atactctact ccttccttgt cgcttaattc ttctcctact
     4741 ttgtaatcac tcacgctttt agcactaaga ctcaaactaa gacataagcc aagcaataaa
     4801 atgtgttttt tcatgatttt cctccttttt atttgcagtt caaattgatt ttaatgtatt
     4861 ttttcttaaa tattaagcat aataagaata atttaaataa aattaaattt taaagtgtta
     4921 ctaaaagtaa tatattttta aagtatataa ttaacattta ttaaaatttt atgatattaa
     4981 ctttatgtta attatttaaa tagtttgttt tttatagagt ttagattttc ttctaaattt
     5041 ttgaaattgt tttcaaaatc tttttttata tctataaaaa aaggattgct taaagtagtg
     5101 ataagataat gattttcttt agaaaagata tgatttaaag tgaaattttt atctgtaagt
     5161 ttgatataaa tttgttcttc gttttcaaag ctaggatttt tgtttgcttt tgaaatttcg
     5221 agcaaaattc cgcaaaaaaa gcgtttgttt tcgtctaaaa actgaatatc ataaatttta
     5281 aaatccttaa attcaaagca gttttgactt ttaaattctt tcaaatcctt tgtaagtcct
     5341 agttttaaaa agtctttttg acttaaactt tgctttttaa atttcgcccc aaaacgacgc
     5401 aaaaacaaat ttaaagcatt aatttgtaat tctttttgtg cgagttttag ttttttggct
     5461 gtaaaacgaa agaaaaaaac acccacaaaa acagctaaaa ttactgcgat taaggcatct
     5521 cttataaaaa caaaggctaa aaaacctaca agtaaggctt cgataatgct taggaatttt
     5581 aagattccta agcgtttaag tatataaagt ctattatttt ctaagctttt taaatccatt
     5641 aagattttgc tttttccatt ctttttcttt gagttgggtc aagatagcgt ttgcgaacac
     5701 gcacatttac aggtgtaact tctacaagtt catcttcttc tatccactct aaagctcttt
     5761 caagacttaa ttttctaggt ggcacaagtt tgattgcatc atcgcttcca cttgctctta
     5821 cattggtaag attctttcct ttgataggat taacatctaa atcatttgga cgagagtgct
     5881 cacctataat cataccggta taaactttag tttgaggctc tatgaaaagt actccacgct
     5941 cttgaaggtt aaacaaagaa taccctaaag ccacgccatt ttccatagaa attaacgctc
     6001 cattattacg cttttcaacc gcaccgctaa aaggacggaa ttctaaaaag ctatgattca
     6061 tcacaccttc gcctttagta tcggttaaaa actgacttct aaaacctata agtccgcgtg
     6121 ctggaatttc aaactcaagt cttgtttgtc catcgcccgt tggtgccatg gttttcattt
     6181 cagcttttct tttgccaagt ttttctatta ctgcaccgct aaattcttca ggcacatcga
     6241 taactaaatg ttcaaaaggt tctgttttaa ctccatcttc aacttttacg ataacttcag
     6301 gtcttcccat gcaaaactca aaaccttcac gacgcatatt ttcagctaaa atagtgattt
     6361 gaagttcgcc cctaccgctt actttaaatt taccttcgcc tgtgctttcg tatttcatag
     6421 caatattagt tttcatttca gcttctaaac gttcagcgat tttatttgaa gttacatgtt
     6481 ttccttcagt tcctgctaat ggtccatcat ttacagaaaa tactatgctt aaagtcggct
     6541 cttcaatgtg taaaggatca agtggcatgg gattgtttgg atctacaacg ctatcgccaa
     6601 catctaaagc ttcaaaacct gctatagcta caatatctcc acttcctgct tcttcgatgt
     6661 ccattttttc taagcccata aagccaatga gttttgaaat tctaccattt accttggtac
     6721 catcagcttt tgcaagcatt acgctttggt ttttcttcac aaccccattg aaaattctag
     6781 caatgcctat tttacctacg aaattatcat accccaaagt gaaaacttga agttgcaaag
     6841 gattttcatc actaccactt ggagctggaa cgcgttcaag tatggtttta aaaagtggct
     6901 ccatattatc actttcatcg tttagatcaa gcttagcata accatttttt gctgcagcat
     6961 aaactatagc aaagtcaagt tgctcatcgt ttgcatctag ggctacaaaa agatcaaaaa
     7021 tttcattgat cactctttca ggatcggcag ctggtttgtc tattttgttg attacaacta
     7081 taggtttaag ccctaaagat aaagcttttt taaccacgaa tttagtttgt ggcataacgc
     7141 cttcttgagc atctactaaa agcaaaactc catcaatcat ttttaaaaca cgttctactt
     7201 ctccgccaaa atcagcatgc cctggagtat ctatgatgtt gatttttgta cctttgtaat
     7261 tgatcgctgt gttttttgaa agtatggtaa taccgcgttc tttttctata tcgttgctat
     7321 ccataacgcg ttctgaaatt tgttctcttt cgctaaaggt gcctgattgt tttaacaatt
     7381 catctaccat agtggtttta ccatggtcaa cgtgagctat aactgctata tttctaatgt
     7441 tttccaaatt ttcttctcca aagctaaatt tttaaaagct taaattatac aaaaatttaa
     7501 cttaaactac aaagtatcaa aacttggaac acttcttgct ttaaaaactt atgaaattaa
     7561 aattttaaaa aggaagttaa aatgtcaaaa ccattaaatg aagagatttt tgttgaattt
     7621 aaaagtgatt tagctgaaag aaaaaatgaa gttttgcttc aagttttaga gcttttagaa
     7681 acttttagat cagatgaaaa cgaaaaaatg gcaagaattt caagtgagct tacagaaatt
     7741 ttagaaaatg aagaaaattt agagaaaatt ttaaatgcta aaaatttaga agagctttta
     7801 aatatcttaa ctgctttaaa tgaagataag atgattaaag tatatgaaga ttcttatttg
     7861 aaagaaaaat ttcctaatgt aatggtagat aaatttttaa aataattttt tgaaggaaaa
     7921 gtgatgtcaa atttagctcc gcaaaatgat gttttaaatc ttacgccgag taaaacttct
     7981 actactagca gttcttttag taaaactagt aaaaataaag aacatgaaag tagtgatagt
     8041 aaaaattcaa ctcaagatga tacggaaagt tttttaaatt ctttgcttaa ttctatcaat
     8101 gaaaccaatg aatttttacc tgatcatatg aagatcagtc aaaaagaagt tgttaatgaa
     8161 gcgatgagca gacttcaaaa aggagctttt gatgagagcg ataagataag cattttcgaa
     8221 tctgcttctt ttatgcaaat tctttctttg ttagataagc taaaaacaga tacagcagat
     8281 gttaaactag caaatctttc tactcaactt tcaagtctta ttaaaacaga ggctaatttt
     8341 aatgctttaa aaggtgcatc aaatcttagt gagcttttgg acatagctaa agatctgggc
     8401 ttaaatgtaa aaaatattaa agtagatcgt cttcttgatc ttaaagcaac ttttccaaat
     8461 ttagataagg ctgatttttt taagggtgct gtggataatg tttttaaaga aatcatcaat
     8521 aataaaattt ccaatgtgag taaaaattta aatcacaatt tagaaaatac aactcatact
     8581 acaagcactc attctatgca aaaaacaaat tctaaagata gcggttcttt gctttctcaa
     8641 actttaaaaa atttagattc catactttca tccaaagaaa gcaaacacga aaaaaacgat
     8701 aaagttaaat caaaaataga agaagatacc acagatgcta aaaatacttt aaaaaatatc
     8761 aaaaatgatg agtttgcaaa aaatttaaca gaagagttaa atataaaaga taaaaaaaac
     8821 caagataatt taaataaaga aagcaaagac ttaaacaaag attttaataa agagttaaat
     8881 aaaaatcaag aaaaaaacaa tttaaatcaa gaaaatatac aagatcaaaa taaaaattta
     8941 aagaacaatg atcaaaattt aaatcttgat aaaaatttaa ataaagaaat tgttaaagat
     9001 actcagaaat tagtttcaaa tttaacacaa aaagatttta atctaaataa agagcctaaa
     9061 aacaacaaca aagaaaataa agatataaaa caaaatttct ttgatcaaaa attaaatttt
     9121 gaaaatttaa ataaaactca agtagttcaa aacaaagaga ataatgcaaa ttttaataat
     9181 aatactacta ataaagaaac ttttactcaa gagcaaacaa aaacgcacag tgaaaatgta
     9241 gataaaaata gcttagatga gttaaattct ttagtcaaag atttaaataa agtaacacaa
     9301 aacaatgctc gcaatatcac tcctaaagaa actttgcagt atttttcaca agatttaaaa
     9361 gaggctgtgg atcaatacaa agcgcctatt actaaactta gtatcactct aaatcctaat
     9421 aatcttggag aagtggaggt aactttgata caaagaggta ataaccttca tatcaatttc
     9481 aactccaatg ccaatgcaat gaatttgttt atccaaaatc aagccgagtt taaaaattct
     9541 cttgtaaata tgggatttac tggacttgaa atgaatttta gtgatcaagg taaaagagag
     9601 caaaatcaaa atcaaggaaa aaatcgtagt ggatatggtt ttaaagatgc tttagatgga
     9661 aaaaatgaaa gtgaaaaagt caatctagag cttgttttag cgaagtattt ttaaattgga
     9721 acacttattg cttaaataat aaaaaactaa ataaaaagga gtttataatg atatcatcat
     9781 cggattggaa tttaaatacc actgctacaa cttcaggtac tacttcttca ggaagtacta
     9841 gtggaacaac tagaacagat tcaagcagta gctcaggaat agtgagcaat ccaaatgcta
     9901 ccttagataa ggatgcgttt ttaaaacttc ttttgataga gcttcaacat caagatccaa
     9961 cagatcctat ggatagcgat aaaatgctta ctcaaacttc acagcttagt gcacttgaaa
    10021 tgcagcaaaa taccaataca actatgcaaa aaatggttga aactatgcaa aagctttctg
    10081 attcttttag tacaagtatg agtacttcag ctttaggggc tattggtaaa atggcaactg
    10141 tttcagataa taaaatcaaa cttacaggtg cagatgagct tatcgctctt aaaatgtatt
    10201 tgcctgaaga ttctgatgaa aacggtgtta cgctagaaat ttatgatagc aataataaac
    10261 ttgttttcag tgaaaaaagc gatgctaaat ctatttctca aggtttattt actatggagt
    10321 ggccaggaag aaataacgat ggggtttatg caggtgatgg tgagtacact gttaaaatgg
    10381 tttataataa taaaaatggt gaaaaaatca ctgcaaatta cggaacttat cctatcgaag
    10441 gtgttgtttt taaagatggt gttgcctatg caaaaatggc tggacaagaa gttccttttg
    10501 atgcaataca agaaataaca gattataagc ttggttcatc ttcatctact ggaggaagcg
    10561 gttcaagtgg agactcaagt ggtggttcaa gcgatggaga ttcttctggg tctggatcta
    10621 cagaagatgg cgacaaagag gaaaaggcat aagccatgat gaattcattt tataatggga
    10681 tttctggagt aaaaagcaat agctttggta ttgatatcac tgctaataac atagcaaatg
    10741 tcaataccac gggctttaaa tactctgatg ctcaatttaa agatattttt tatactacca
    10801 taacaaccca atcaaccaac cctgctcaag gtggttatgg tagcggtgca gcatcttctc
    10861 aagttgtttt cgaacagggt tctcctgttg caagtgatgg cgaatttgat gtggctttgc
    10921 aaggaaaagg attttttggg gttttagggg ctgatggcaa tgcttactat actagaaatg
    10981 gatcatttag aagagatgcc aatggatatt tggtagattc ttatggaaat tttgttttag
    11041 gaacaatgaa tcctgctttt actggtatta actatagcga tagagttgct gggcttatgg
    11101 gggattatct taacacagga actccggtaa ataatggttt tactgtaaat tcaaataatt
    11161 ctttcagtat aggcacaacc gcttctcaag gggctattaa agtacctgtg aatatgtatt
    11221 tacctcctca agtaactcaa aatgtaaaat ggagtggaag tttaaatact aacacaacaa
    11281 cagaagtagt taaagtagat cttgatccta gtaaatttaa cattacaaaa actgaagatg
    11341 gaaaatatgt agttagtggt agtgttagca aagaagatgt gtttagtgct aaagcgggtg
    11401 ataggattat tttaaatttc actgatgata atggcgtaaa aacaagcttt gaagcgactt
    11461 tagatgaaaa tctaaatttt aaaagtaacg agcttgattt aaaaggattg gatgaaaata
    11521 gcatcaagct tgatacagct caaatttcaa cagagcaaca aaaagccaat aaagatattt
    11581 tagaatcccc tatttataat gcagatggaa gtaaaagcac tttaagggtt acacttgaaa
    11641 gagttttacc gcaagaaggc gataatatac aatataaagc tattgcacaa atttatgatt
    11701 ctaatggcaa tgccgtaggc aatccgactg aaggaaatat ggtttttgat aaaaatggtg
    11761 ctttgcttca aaacaatatt acaagcattg caaatccaaa tggtggaaca attaatattg
    11821 atttaggttc tccttatgat gctaacaaac ctggttcggg ttatagtggg atttatatta
    11881 aacaaggcgt cgaaaaaaat gtatttacac aacaagatgg tgtagctgaa gggttttttg
    11941 aacaatataa tatatccgat gatggaagta ttgttgcgca atttagcaat ggtaaaaatg
    12001 ccatagttgg aaagcttgct ttatataatt ttatcaatga gcaaggatta gttgctatgg
    12061 gagataatat ttttgcagca acggcaaata gcggtgatgc aagttttatt atgaaagatg
    12121 gtcaagttgt taatacagct aaatttaaag gcggattctt agaacaatca aatgttgatt
    12181 taagcgcaga gctttcaaac cttatcgtaa ctcaaaaagc ctttgatgca agctcaaaaa
    12241 gtatcactac aagtgatcag atgatacaaa aagccattaa tatgaaaaga taattcttag
    12301 gaattatctt tttctaattt ttcaaaaata attttaattt cttctatgtc gctttcgcta
    12361 taattatggc ttgatttaat ataacttact tgctgtcctt tttcaagata taaaaccttt
    12421 tcatagtctt ttaaatttat atgatgtttt agttcaaggt tggtgtttgt gttaggataa
    12481 aattttaaaa aattatcctc tccgatattt tcggctttta tgtatatttt tacattgtaa
    12541 accatttcat ttaagaaatt taatttcgca tcaatttgat attttaattt tacaagtttt
    12601 ttatacgaaa tgctaagatg attgtatttt tttatgatat cgtgataaag atttgaaaat
    12661 ttcatttcta tggcgctagg atttttagtc ttttgaagtt tgatgatttt gatttgattt
    12721 ttgattagat aatcatagta attttgcatt ttgcttatgg tgtcatcaag cttacttttt
    12781 attttaaggc ttagattttt aagattttcg cattctgtat ctgagttgtt ttcaatagaa
    12841 actagtggtg aaactacgat attgtttttg aattttatat tgtttgttat gattagattt
    12901 tttcttggat ataaagtatt atccgttagt aaattgcaaa tataaatatt ttctgcttct
    12961 atttttccac ccatgcagtt ttcaacaaat acatttttag ctataattgt cccattttct
    13021 aaatttttta tatatacagt gtcagcttgc aaagttcctt tgtgtgttgt aataaaaata
    13081 tcttgtgcaa aaatttcgct ttttgcatga gttaagcctt tgatactgat attttttcca
    13141 taaagttttg ttgctccaac attcccattt acttttatat ttgaagcttg aacatttaca
    13201 atacctgatt taatagcatc atcacttata tcaaaattag tgatttctaa gtttatattt
    13261 tcatcggtat ttgttttgat tgaaccggtt gttttaagcc ctatttgtga taattttaaa
    13321 ttatttgcga tacaatatcc tgtatgatct ttgtttaaaa atccataatt ggcgctaaaa
    13381 tatttaattc tatcttctaa ttcttctgtg taaatgcttt catcttttat gataaaagga
    13441 ttatcaagaa aggctattgg atttaaatga agtatctctc ctcttaaatt tcgtccttct
    13501 tttccaagaa ttctataaat gtattcaaaa agtagctcat ttttttcaat aggtttacag
    13561 tagtttcctt catcatagtt aatattttcg tcaaaacatt cttcgttaac atctctatga
    13621 taaataattt catcactttt atgttcaatc ttatctacac ctttggcaat ttcaagctct
    13681 atttctttaa tagatggact tttttgtatt gataagataa aatcatcaat cttgtcaaat
    13741 aaatttttat caagtcttaa gattaaaaat ttttgtttga tcattatttt gtagatattt
    13801 tgcaaaatat caaattttaa attagggtaa tatttaaaat tttctgtaag gttgatactg
    13861 gcttttagat gggttaggtt ggagttggat ctaagtttga ctgtaaaagg aaaactttgg
    13921 gtttttgggt aaatttctat aagaaatttt tgcactatgg tattgtagtt ttttacaaaa
    13981 aaatcatctg cataaaataa gtcaaaatcc tttctttcat aagtttttgt ttttgctggt
    14041 tttacactag aacacagaag tttaaaatct ataactctaa aatcaagaat ttgttctgtg
    14101 tttgcttgtt catgatttaa actttcaaaa ggattgaaag tttctaagg
//
LOCUS       DAPOLW010000034        14115 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.034, whole genome shotgun sequence.
ACCESSION   DAPOLW010000034 DAPOLW010000000
VERSION     DAPOLW010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14115
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.034"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(1..2198)
                     /locus_tag="ROE18_000718"
                     /pseudo
     CDS             complement(1..2198)
                     /locus_tag="ROE18_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901019.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
     gene            complement(2137..3294)
                     /locus_tag="ROE18_000719"
     CDS             complement(2137..3294)
                     /locus_tag="ROE18_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002917307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LicD family protein"
                     /protein_id="HDX3650917.1"
                     /translation="MNLKGIFRKSFRESKKGYLHLILLHMILIYLMQKKSRHFIFLKL
                     CSYLSKVNMKTVFYYQAEFYFFYAEYKKALNYIDLFLEKYPLNIDGKLLKIQLLYLLG
                     DKTKALYELEKIQQESNRLKIWMLMSKLVNTKIELKNMEKLYLKYIEKKRNISTKIEI
                     QKYISSAAASIEAYDIAEHYLKNSLKLHEKFSLKNTKKKYFSKYDALIALEDLSSVFN
                     SLNIKFFLASGTFLGCIREKNFISNDYDIDVGVWEEDFSNELKIALEQYGTFYIHDPK
                     WKGGIKLKHINGILIDIFIHYKDGCKHYHLGSAVKWYNSTFDLIKYDFLGKEYFGFKE
                     YDRYLSENYGDWRIPKKNFDNILDTPNAVIFNEQEYKLHLYRSFFKKNTKV"
     gene            complement(3291..3680)
                     /locus_tag="ROE18_000720"
     CDS             complement(3291..3680)
                     /locus_tag="ROE18_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HDX3650918.1"
                     /translation="MKNVITFGTFDLFHYGHLRILERAASLGDKLIVGVSSDSLNFAK
                     KHRYPIYSEQERLNIISSLKCVSCVFLEEALELKRDYLLKYQANILVMGDDWKGKFDC
                     FNDICDVIYFERTPSISTTEIIERIKL"
     gene            complement(3680..4627)
                     /locus_tag="ROE18_000721"
     CDS             complement(3680..4627)
                     /locus_tag="ROE18_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HDX3650919.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLAKNLDENFNQAVNLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTPEDVLIAISNSGETEE
                     ILKIIPAIKKRKIPLIVMCGKKNSTLVKQSDIFLNIAVKKEACPLQLAPMSSTTATLV
                     MGDALAAALMKVRNFKPDDFALFHPGGSLGRRLLTKVKDLMVSSNLPIVHPDTEFNDL
                     VDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKTSDKPRFDFRAKEIMSTNPKVVDA
                     DAMASEAEEIMLKHKIKEIIVEKEEKVVGIIQLYAIGRV"
     gene            complement(4637..6295)
                     /locus_tag="ROE18_000722"
     CDS             complement(4637..6295)
                     /locus_tag="ROE18_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HDX3650920.1"
                     /translation="MKKILILLFSCILCFGAVDVSQIISAEDQGSTTTSIDQNLSSNY
                     DIANKENNLTKIHQILVFGAHLFNGNFKNYNQRVYNPDYKIAVGDQISLKIWGAVEFS
                     QVLVVDSQGNIFIPKVGAVNLLGVKNSALVSVIKARVNKIYKSNVFVYADMNAYQNVS
                     VFVTGSVNAPGLYQGLSSDSVIQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVNGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVSAYNKMQFSKVLLRTGDEVEFHPEYVSENITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKANPQSNMQALQVFRKSVARTQKELINAQLKELETLALT
                     SGSVTAQGAAIRAQQAKTILEFIQRAKQVEPKGQIVIDNPKSYNSVILEDGDTINVPS
                     KNNLIIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     GIDMKPGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            complement(6297..7415)
                     /locus_tag="ROE18_000723"
     CDS             complement(6297..7415)
                     /locus_tag="ROE18_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDX3650921.1"
                     /translation="MEENKTLLEKIKDLSVFDSFKIVWFIMIFVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQTSGILSLLSSTSTASEDLNYLKGYIESSDMLKILDEKIKLKSL
                     YQEQHIDLPFKIWDSSSIESYLKYYQARVKVHTDETTKLLQVEVEGFTPKSAHLIAQT
                     IMQESEKFINEISHKAAREQMAFAENEVQKYKERYQKAQNDLIAFQNKYGVFDPLKQA
                     EAKASLVAQIETNLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIEGTFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIVKFIKMIIEEHKY"
     gene            complement(7415..8077)
                     /locus_tag="ROE18_000724"
     CDS             complement(7415..8077)
                     /locus_tag="ROE18_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDX3650922.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGYNGAG
                     KSTLMRLLSGAELPDSGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGKE
                     LQEKVKFVEDFAEIGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHNVAEIKEWCDKIIYMKNGQITVYDDVDEGIAVYQG
                     KA"
     gene            complement(8074..8856)
                     /gene="kpsM"
                     /locus_tag="ROE18_000725"
     CDS             complement(8074..8856)
                     /gene="kpsM"
                     /locus_tag="ROE18_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide transporter KpsM"
                     /protein_id="HDX3650923.1"
                     /translation="MLNVIYALFFRELKTRFGKNRYLGYIWVVGEPMSVVLLVTIIGT
                     VIREYHHQIMPEGISIFMFLISGIMPFFMFRSIVTQLMNGIGANLSLFAYKPVKPIHV
                     FIARTLLEFCIYFVIFITVLFFAGWFFRLDVFPVHLLGVLFCIFLLICSAFALGICFA
                     IVWHFVEPLRTLLAYFSIVFYWSSGIIFPTWLTPRPLLDIFYYNPLLHIMELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFIYYYNRQALTAAKKE"
     gene            complement(8928..9335)
                     /locus_tag="ROE18_000726"
     CDS             complement(8928..9335)
                     /locus_tag="ROE18_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650924.1"
                     /translation="MDERILEFIKNEQLLSWAMIDEKGVYTASAFYAFDEKNLAFIIA
                     SHEDTKHIRLASENSSIALNIAKESKIAFLKGVQAKAEFKMASKEQMKIYFSKFPFAK
                     LDKSAKIYALELFWLKFTNNALGLSKKLEFCKK"
     gene            9410..9973
                     /gene="ciaI"
                     /locus_tag="ROE18_000727"
     CDS             9410..9973
                     /gene="ciaI"
                     /locus_tag="ROE18_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HDX3650925.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSISYANNEEGKTL
                     NLKRQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDKNHQNAIMNNFTNKLSDLLKQNQTNDKDINTSMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            10009..10698
                     /gene="dut"
                     /locus_tag="ROE18_000728"
     CDS             10009..10698
                     /gene="dut"
                     /locus_tag="ROE18_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HDX3650926.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFAWKHWKNISNPTNWENVRIEIVDIWHFILSLLLEEYRDKNNKDFKAIA
                     TEVNAVSVFQDFCKEEEYPNEGDIYGILNDIELIIHKCSGFGFNLGELLSTYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNNGYKDGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEECYKKA"
     gene            10700..11413
                     /locus_tag="ROE18_000729"
     CDS             10700..11413
                     /locus_tag="ROE18_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HDX3650927.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLILMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYALHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINQKYYHYDNTNEVSTLKTIFEIFKIFIKFIGILLLCTLALFLPFINIFVYYLAF
                     YYLFHKLLMIDVTSTILDKESFKNFHSDFSPLEFKFSTLCFYLLSSVPLLGLFLQVFF
                     VIFLTHLSYQRILKLKAKA"
     gene            complement(11396..12361)
                     /gene="tilS"
                     /locus_tag="ROE18_000730"
     CDS             complement(11396..12361)
                     /gene="tilS"
                     /locus_tag="ROE18_000730"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HDX3650928.1"
                     /translation="MQIKDEILALLKKGKNLLAFSYGSDSSALFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQ
                     DYDHLILAHHLNDQFEWFLMQLSRGAGLAEILGMQECEKRQNYTLLRPLLFISKDEIS
                     SFLKEKDIFYFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKRSFSYLDEDRKKLYD
                     FENIKEIQGLLICPKNESLIARAVKMKGLLLSTAQRKELLKGDCVLGGKIALAYKNEQ
                     AIVFEYETCQKLPKNFKEECRIAKIPRLLRAYLYNHKIDISSLSF"
     gene            complement(12351..13670)
                     /gene="rimO"
                     /locus_tag="ROE18_000731"
     CDS             complement(12351..13670)
                     /gene="rimO"
                     /locus_tag="ROE18_000731"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HDX3650929.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGRLSAYELCDEPSKADVIIVNT
                     CGFIDSAKKESINAILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQSENFKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIGEVEKIKGI
                     RAARILYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFD
                     MEQVSFKVINKRLKIIEKIVNEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            13814..>14115
                     /locus_tag="ROE18_000732"
     CDS             13814..>14115
                     /locus_tag="ROE18_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDX3650930.1"
                     /translation="MLDTGFKCFNLSLGGTPSLQNLYELIRNKKLLENADLIITGSNT
                     HDIAQYNSIDLFPKSYQVMNWLYKELYFLKKKIICFIAPTPQKWLNKNCVKYVNTL"
BASE COUNT         4921 a         2434 c         1670 g         5090 t
ORIGIN      
        1 aactctttgc gttgcagcac catcttcatt taatacaaac atatctttaa tctcttgaga
       61 aattttacat ttctcaagca ttaatggatt tttcaaaatt cctaaaactt cttgaggagt
      121 tttacaataa acagaattta acatttcaac atcaaaatat aagccgtgtt gatttttgta
      181 ttcctcatag tcataaatat agtaaataat tggtctattt aaaaccataa aatcaaatgc
      241 aattgaagaa taatcagtta ttaatacatc aactattgat aaaagctcat tagtatctat
      301 atctctagga acacttggaa tcccattatc tttaagtttg tcttctaaat tataatgacc
      361 tctaaataca acaacaaatc cagatttttt aaatatttca agatctttaa taagtttttc
      421 aatatttaac tccgcatttt caaatgaatt gcgatatgtt ggtgcataca atataacctt
      481 atcaccaatt ttaatattta gtctttctcg tatttgttgt tttttaaaat tatttatttt
      541 taaagtaata tcaattctag gataaccgct ctcataaact tttccttgga aaatattttc
      601 aatatcatgt ttttgcatta aaacttcaga tgtatgctta tttggagata taatatgggt
      661 tgattgtaaa aagtccttct gggtaacttc aaattccatg aaaccccgtc tcatatcctt
      721 tcctaaatat ttccatggtg ttccatgcca agttgccaag tatttttgtt caggttttct
      781 tataaaaaat ctacaaaaag atccagaatt aatcaagtat tttgcgcttg ctaaatattt
      841 aaaatataat ttagaaaaat attttacaaa aataattttt ttattttgtc taaattctaa
      901 aggaatagat tcgaaatctt gtaataccca tatatggata aaattatcaa atcggggatc
      961 atttaaaaga tgtaaaaaaa tcgcataggg attacatgac ataaactgtg cagtatgtgt
     1021 ttgatataag atagcattct gtaaaatatc ttcattttca taataatcca aatatataac
     1081 tttttgtcta aaaaaatcat cttttaaaaa atttaaattt tgatcaaaaa tattattatt
     1141 aattctattg atttgagcaa agattttaca tgcctctttg tgatgatcta gcttcattaa
     1201 acaattagct aatctataaa aatactctgc acgacaataa gagtctcttt taaaagcttc
     1261 tgtataaaat atagaagcct gttcaatctt gttttgcttt tctaaaacta cccccaatct
     1321 ataatgatac acagaacaat gatagttatt ttctatagcc ttatgataat acttttcaga
     1381 atttttccaa tcataaagca tttcaaaact aaaagctatt ttgtaaaata ttttatctaa
     1441 atatactatc tctagctctt ggattttgtt taaataagct acattagctt cactccaata
     1501 acccattttt tcatgaaaaa cgcctatacc atatatatca gattctaatt cttcgtcaaa
     1561 ttttatagca tatccataaa atttatttga taaaactata tctttaattt tctcataaca
     1621 aaaaccaagc ctataatacc atacagattc aattggtatc ttttgtttct cttgaattaa
     1681 aatggactct ttgtaatatt ttactgcatc gttatatctt ttcatagctt cacaagcaat
     1741 tgctaaatct cttaagagaa tgaaattctg ttcatttcca tgatttaact cttgcttaag
     1801 tctatcaact tctttccacc ataatttttg ctctaaaaaa aaaccaaatt ttaaatgatt
     1861 ataaacttgt tttaattgtt ttctccaatt tggagtttct tttagaaaac atgcttgctc
     1921 aaaaaaaact ttagcatcat tccattcttt taaatgaaaa caacacattc ccgttttaaa
     1981 atatgctttg gcattatctc taaaattgtt agatgcttta ataaaatact ttttagatgc
     2041 ttgatatttt tttctcttat atagtataga agcgaataaa aaatataacc caaacataca
     2101 atacttcatt ttttctccct aatatttatt tttattttat acttttgtat tttttttaaa
     2161 gaacgatcta taaagatgta acttatattc ttgttcatta aaaattaccg catttggagt
     2221 atctagaata ttatcaaaat tttttttggg aattctccaa tcgccataat tttcacttaa
     2281 ataacgatca tattctttaa aaccaaaata ttctttacct aaaaaatcat acttaattaa
     2341 atcaaaagtt gagttatacc atttaacagc agatcctaaa tgataatgct tgcaaccatc
     2401 tttatagtga ataaaaatat caatcaatat accattgata tgtttaagct taatcccacc
     2461 tttccatttt ggatcatgaa tatagaaagt accatattgt tctaaagcta tttttaattc
     2521 attgctaaaa tcttcttccc aaaccccaac atcaatatca taatcatttg atataaaatt
     2581 cttttcccta atacaaccta aaaaagtacc actggctaaa aaaaacttta tatttaatga
     2641 attaaaaaca ctagataaat cttccaaagc tatcaaggca tcatattttg aaaagtattt
     2701 ttttttagta ttttttaaag aaaatttttc atgtagcttt aatgaatttt ttagataatg
     2761 ttcagctata tcataagctt caatgctagc tgcagcacta gatatatatt tttgaatttc
     2821 aatctttgtg ctaatatttc tttttttttc tatgtatttt aaatacaatt tttccatatt
     2881 tttaagttct attttagtat taaccaactt gctcattaac atccatattt ttaaacgatt
     2941 agattcttgt tgaatttttt ctaattcata taaagctttg gttttatcgc ccaataaata
     3001 taataattgt attttaagta atttaccatc tatatttaaa ggatattttt ctaaaaataa
     3061 atcaatataa ttcaaagctt ttttatactc agcgtaaaaa aaataaaatt cagcctgata
     3121 ataaaaaacc gtcttcatgt ttactttgga taaataactg cacaatttta aaaaaataaa
     3181 atgtctactt tttttctgca ttaaatatat caaaatcata tgcaacagaa ttaaatgcaa
     3241 ataccccttt ttgctttcac gaaagctttt gcgaaatata ccttttaaat tcataattta
     3301 attctctcaa taatttctgt cgttgaaata cttggggttc tttcaaaata aattacatca
     3361 caaatatcat taaaacaatc aaatttacct ttccaatcat ctcccataac taaaatattt
     3421 gcttggtatt ttaaaagata atctcttttt aattccaatg cttcttctaa aaatacacaa
     3481 gacacgcatt ttaatgaaga tattatattt aatctctctt gctcgctgta tataggataa
     3541 cgatgctttt tagcaaaatt taaagaatct gatgatacac caacaattaa tttatctcca
     3601 agagatgcgg ctctttctag aatccttaaa tgaccataat gaaacaaatc aaaagtacca
     3661 aaagttatta catttttcac tataccctcc ctatagcata aagttgaata atccctacaa
     3721 ctttttcttc tttttctact ataatttctt tgattttatg ttttaacatg atctcttctg
     3781 cttcacttgc catagcatca gcatcgacta ctttaggatt tgtactcatg atttctttag
     3841 ctctaaaatc aaatcttggt ttatcgcttg tctttaaagc acgacgcaaa tccccatcag
     3901 tgatgatacc cactaatttt tcattctcaa gtaccacaca aagccctagc tttccactag
     3961 tcatcacatc aacaagatcg ttaaattcag tatcaggatg cactatagga aggttacttg
     4021 aaaccataag atcttttacc ttggttaaaa gcctacgtcc caaacttccc cctggatgaa
     4081 aaagagcaaa atcatcaggc ttgaaatttc ttaccttcat caaagcagca gctaaagcat
     4141 cccccataac caaagttgcg gttgtcgaag acataggagc aagctgcaaa ggacaagctt
     4201 cctttttcac agctatattt aaaaatatat cgctttgctt tacaagggtg gaattttttt
     4261 taccacacat tactataagt ggaattttac gcttttttat agctggaatg atttttaaaa
     4321 tttcttcagt ttctcctgaa tttgaaatag caattaaaac atcttcagga gttagcattc
     4381 caagatctcc atgcaaagcc tctcctggat ggatgaaaaa gcttggcgtt cctgtacttg
     4441 ctaaagtagc tgctatctta gcacctatat gacccgattt gcccattcca ctgactatgc
     4501 aacgcccttt ggtatttagc atcaaattca cagcttgatt aaaattttca tctaaatttt
     4561 tagccaaatc caaaatagct tgtgcttctt tttcaaagac ttctttggct atttcaagag
     4621 tattcatttt taaaccttaa agattaagca caacattggt tgcaatagca atttgataaa
     4681 gaatttgagt taacattgaa aaaatttgca aattctcact atctactttt ggcaatacca
     4741 acacagaatc gcctggtttc atatctatac cactatgata tttttcagct tttccattgc
     4801 ttcgtatcac caaaactttt gaagtatccg ctctttctcc ataacctcct gcaagattga
     4861 tataatatct taaatctttg cccttatcat acacaaaagc tccaggtaaa gaaacctcac
     4921 cttgaactat gatgagatta ttcttacttg gtacattaat agtatcacca tcttctaaaa
     4981 taaccgaatt ataagacttt ggattatcaa tgacaatttg acccttaggc tctacttgct
     5041 tagctctttg gataaattct aaaatcgttt ttgcttgttg agctcttata gctgcacctt
     5101 gagctgtaac agaaccacta gttaaagcta gagtttcaag ctctttaagc tgagcattga
     5161 taagttcttt ttgagttcta gctacacttt ttctaaacac ttgtaaagct tgcatgtttg
     5221 attgtggatt agctttaatt aatttagaaa tatcttctaa agtcgttcct ttacccacaa
     5281 ctaaagtttt taaaccatta tgctcgccat ttacacttat agttatattt tcagaaacat
     5341 actcagggtg aaattctacc tcatctcccg ttctaagtaa aacttttgaa aattgcattt
     5401 tattataagc actgacatca agtttatgat cttcaccata actttttacg atagcattag
     5461 tcacgatagg tttagcacct gatactctag ctaagtcagc taaagtttta atatcatttg
     5521 aaagttcaaa acgaaaaggt ctttgcacat caccgttaac aaaagcgtaa ttttgaacat
     5581 ttcctactaa aataacatct ccacttctaa aaggaaaaag atccatttgc ccctttagta
     5641 aaaaatcata taaatcaata ttttttatca cgctgttatt acgcaaaatt tgaatatctc
     5701 taaaacttcc atattctaaa tttatacccc ctgctttatc aagatactgg atcactgaat
     5761 ccgaactaag tccttgataa agtcctggag cattaacgct tcctgttaca aaaacactga
     5821 cattttgata agcattcata tctgcataaa caaaaacatt gcttttatag attttattaa
     5881 cacgtgcttt tataacactt acaagggcgc tatttttcac acctagtaaa tttacagctc
     5941 ctactttagg gataaaaata tttccttgag aatccaccac taaaacttgc gaaaactcaa
     6001 cagctcccca aattttaaga ctgatttgat caccaactgc gatcttataa tctgggttat
     6061 aaactctttg attgtaattt ttaaaatttc cattaaaaag atgagcgcca aatactaaaa
     6121 tttgatgaat ttttgtaaga ttattttctt tatttgctat atcataattt gagcttaaat
     6181 tttgatctat gctagttgta gtagaacctt gatcctctgc tgaaatgatt tgtgaaacat
     6241 ccacagctcc aaaacataaa atacaactaa aaagtaaaat taatattttt ttcattttaa
     6301 tacttatgct cctctattat cattttaata aatttaacaa tcccaaaaat caaagataat
     6361 acaataaacg ctgttaaaat atcataaatt ctttcaggat attttgcgct ttctggaata
     6421 tctggacttt gaatgatgac aagttgtttt atttttctta atgcttctat tctagcactt
     6481 tcataagctt ttaaagctgc ttcataagct ttttgcgcaa aagtaccttc tatagttaga
     6541 tcttgaaatt tagcagccaa atcattaagc ttttgagaag aattgttagc tgaaatttta
     6601 gatttttccc ttaaaagctg ctttttaatc gcttcaattt ctgctttaag tgctactact
     6661 tcaggtgccg catcattcat atagctttgt aaagttaaaa gtttagcttc tttttgagct
     6721 aaattagtct caatttgcgc aaccaaactt gctttagctt cagcttgttt caagggatca
     6781 aaaaccccat atttattttg aaaagcaatc aaatcatttt gtgctttttg atatcgttct
     6841 ttgtattttt gtacttcatt ttcagcaaaa gccatttgtt ctctagctgc tttatgagag
     6901 atttcgttga taaacttttc gctttcttgc ataatagttt gagcaatcaa atgagctgat
     6961 ttaggtgtaa aaccttctac ttctacctgc aaaagcttag tagtttcatc cgtatgcacc
     7021 ttaactcttg cttggtaata tttaagataa gattctatcg aacttgaatc ccaaatttta
     7081 aaaggcaaat ctatatgttg ttcttgataa agacttttaa gtttaatttt ctcatccaaa
     7141 atttttaaca tatcacttga ttctatataa ccttttagat aatttaaatc ttcgcttgct
     7201 gtagaagtac tactaagcaa agacaagatt ccacttgttt gagcactttc tccacttgtt
     7261 gatctaacat ctaaaatcat cgtgcttaca tatcttggcg ctgcaatcaa tgtataataa
     7321 atcacaacaa aaatcattat aaaccaaaca attttaaaag aatcaaatac acttaaatct
     7381 ttgatttttt ctaataaagt tttattttct tccattaagc ttttccttga tatacagcta
     7441 ttccttcatc tacatcatca taaaccgtaa tttgtccatt tttcatataa attattttat
     7501 cacaccattc tttaatttca gctacattat gagataccat aatcaccttt gatttgctta
     7561 atctttctct atataatttc acgctttttt ccctaaaagc aggatctcca acagctccag
     7621 cttcatcgat taaataataa tcaaaatcaa aggccatact aagtccaaaa gctattctag
     7681 cactcattcc cgaagaataa gtcttcatag gctcatcaaa aaattttcct atttcagcaa
     7741 aatcttccac aaattttact ttttcttgaa gttctttacc cttgtatcca tacaccctag
     7801 ctacaaattt agcattatct ctggcagtta aagaaccttg aaaagctcca tttaaaccca
     7861 aaggccaaga taatttttta ttagtaatta tcttgccact atcaggaagc tctgctccgc
     7921 ttaaaagtct catgagagtg gacttgcctg cgccattata tcccattaaa cctatgctac
     7981 aattttcagg aaattcaaaa gtaaaatttt taaaaacata atgccttcca ccactaaata
     8041 aaggataaga tttagttaga ttaattagct ttatcattct ttttttgccg ccgttagagc
     8101 ttgtctatta tagtagtaaa taaaaagccc tataaataaa acaagtaaaa tccaaaatat
     8161 agcataaaaa taactatatt catcttgcaa aggataattt tcaaaaaaat taaatcttaa
     8221 aagctccatt atgtgaagca aaggattgta ataaaatata tcaagtaaag gacgaggagt
     8281 taaccaggtg ggaaatataa tcccagaact ccaataaaat actatactaa aataagctaa
     8341 taaagttctt aaaggttcta caaagtgcca aacaatagca aaacaaatcc ctaaagcaaa
     8401 agctgagcat atgagtaaaa aaatacaaaa taaaactcca agtaaatgaa caggaaatac
     8461 atcgagtcta aagaaccacc ctgcaaaaaa aagcacagtg ataaaaatca caaaataaat
     8521 acaaaattca agcaaagttc tagcaataaa tacatgtata ggttttacag gtttataggc
     8581 aaacaaagat aaatttgccc ctattccatt cataagctga gttactatac ttctaaacat
     8641 aaaaaaaggc ataatgcctg aaatcaaaaa cataaaaata gaaattcctt caggcataat
     8701 ttgatgatga tattccctaa taacagttcc tataatagtc accaaaagca caacactcat
     8761 aggctctcca actacccata tatatccaag atacctattt tttccaaatc tagtttttaa
     8821 ctctctaaaa aataaagcat aaattacatt taacatttat tttctatacc taacaattta
     8881 cataaaccat aatcataact cattttttta aacaaaatca taaaaattta ttttttacaa
     8941 aactcaagct ttttactaag tcctaaagca ttgttagtaa atttaagcca aaaaagctct
     9001 aaggcataaa tttttgcact tttatcaagt ttagcaaagg gaaatttaga aaaataaatt
     9061 ttcatttgct ccttgcttgc cattttaaac tcggccttag cttgcacacc ttttaaaaag
     9121 gctattttac tttctttggc tatattaagt gctatacttg aattttcact ggctaatctt
     9181 atatgcttag tatcttcatg agaagcgata ataaaagcta aattcttttc atcaaaagca
     9241 taaaaagcac tagccgtata aacacctttt tcatcaatca tagcccaaga taaaagctgc
     9301 tcatttttta taaattctaa aattctttca tccatattat aaaaattata ctaaaatatt
     9361 tttaaaaata accgattttt gatttaaact ataaatataa ggggaagaaa tgcaaattga
     9421 tgctagtaaa aaccaaagtt tttcgatgga ttatacaaca aaaagtggca aacacttagc
     9481 cttatctatg tatgacaatc aaagcataag ttatgcaaat aatgaagaag gtaaaactct
     9541 taatcttaag cgtcagtatg gttttagctt tacttttgaa ggctctaaac tcacacaaaa
     9601 tgatcttgat gagattaaaa atgctatgaa agaagttgaa cctatgatca aagatttttt
     9661 agcaaattct aaagttggag agttaaagcc aaaggaaatt atcgaatcag ctatgcaaat
     9721 ggcaaatgtt ctaccaactc caaatgataa aaaccatcaa aatgctatta tgaataattt
     9781 tacaaataaa ctcagtgatt tgctaaaaca aaatcaaaca aatgataaag atatcaatac
     9841 ttctatgctt gaagatagca aaaaacttct tgatgaagtt ttagaacaaa tgaaaaaaca
     9901 acttgaaaaa caacaagaaa aagccaagga aaatcaagat aagacagatg atagtttaaa
     9961 tctttacgct taaatcatat aatattaaaa attatcaagg agttttaaat gacaaatatc
    10021 gaaattttag aaaatatgct caaactccaa caaaaactca acgatgaaac aaacggctta
    10081 aattgggaaa atggctacac caaagaagga aaactgatca gttggagacg ctgtatttat
    10141 atggaatgtg cagaacttat agactctttt gcatggaaac attggaaaaa catttcaaat
    10201 ccgacaaatt gggaaaatgt gcgtatagag attgtcgata tttggcattt tattttaagt
    10261 cttttacttg aagagtatcg cgataaaaac aataaagatt tcaaagctat agccacagaa
    10321 gttaatgctg taagcgtgtt tcaagatttt tgcaaagaag aagaataccc taatgagggt
    10381 gatatttatg gcattttaaa tgatatagag cttattatcc ataaatgcag tggttttgga
    10441 tttaatcttg gagaattact ttcaacctat tttactctag ctattaaatg tgggctaaat
    10501 cttgaaattc tttataagac ctacataggt aaaaatgttt taaatatttt tagacaaaac
    10561 aatggttaca aagatggtag ctataaaaaa acttggaatg gcaaagaaga caatgaagtt
    10621 ttagctcaaa ttttagaaca agagcttgat tttgatacta tttataaaaa actagaagaa
    10681 tgctacaaaa aggcataatt tggatatttt aaaacttgca atcaaagatt ttttaagtct
    10741 taaattttta aaatttgcct taattccttt gatttttagc cttatactga tgcttttttt
    10801 aggagtactt ggcttttcgg ccttgcttga ttattttaat tctttattta gcgttggaga
    10861 agattcgttt tgggcgtggt tttatgctct tcattttgta caaattttaa tcaccatcat
    10921 aagtttttta ttttcaggtt ttattgttgt ttttgcttcg gtttttttag ccctttttat
    10981 cacttctttt cttactcctt ttatcgctaa agaaatcaac caaaaatatt accattatga
    11041 taatacaaac gaagtttcaa ccttaaaaac tatctttgaa atttttaaaa tatttataaa
    11101 atttataggg attttattgc tttgcacctt ggctttattt ttacctttta taaatatttt
    11161 tgtatattat cttgcttttt attatctctt tcacaaactt ttaatgattg atgttacaag
    11221 cacgatttta gacaaagaaa gttttaaaaa ttttcattct gatttttcgc ctttagagtt
    11281 taaatttagc actctttgtt tttatctact ctcatcagta ccacttttag gacttttttt
    11341 gcaagtattt tttgtgattt ttctcacaca tttaagctat caaagaattt taaaactaaa
    11401 agctaaggct tgaaatatcg attttgtgat tgtataaata agctcttaaa agtcttggaa
    11461 ttttagctat tctacactct tctttgaaat ttttaggtaa tttttgacaa gtttcatact
    11521 caaaaacaat agcttgttcg tttttatatg caagtgctat tttaccacct aaaacacaat
    11581 caccctttaa aagctctttt ctttgtgccg tgcttaaaag caaacctttc attttcaccg
    11641 ctctagcaat caagctttca tttttagggc aaataagaag tccttgaatt tctttgatat
    11701 tttcaaaatc ataaagtttt ttcctgtctt catcaagata agaaaaactt ctttttaaac
    11761 cctgatgaaa ttcactcaca aaggcattag agaaattttt tcttatataa tttctaaaat
    11821 atttttcatt ttcattactt tcatcatgga aataaaaaat atctttttct tttaaaaaag
    11881 atgaaatttc atctttactt ataaagagta aagggcgtaa aagtgtataa ttttggcgtt
    11941 tttcacactc ttgcatacct aaaatttcag ccaaacctgc tcctcgtgaa agttgcatca
    12001 aaaaccattc aaattgatcg tttaaatgat gggctaagat aagatgatca taatcttgct
    12061 caagacaaat tttttcaaaa aaatcatagc gaaaatctct ggcttttttt tcaaaattac
    12121 tttgaaattt aggagcgtgt tttatgaaaa tttttttatg aaattttaaa gcaagttctt
    12181 tggcttttaa ctcttctaaa tcactatttt ttcttgtttt gtaatttatc atcacaagat
    12241 caaagtcgat cttttcttgc attaaaagat aaaaaagcgc actagaatca cttccataag
    12301 aaaaagcgag taaattttta ccctttttta aaagggctaa aatttcatct ttaatttgca
    12361 tctacttttc ttaaagcctt agcaaggagc tttttatcaa ggttttgtaa aatttcacat
    12421 tcataaattt gccccatttc taaatttcca cattcgcttt cattgataag aatttcccca
    12481 tcaatctctc tatcccatct taaatcttta gctgcgatga aaaactctcc ctcactactt
    12541 tctcctgtgc aaactactaa acgcttttgc cctacttctt tttcaaaact tttttctatc
    12601 acttcattaa caattttttc tatgatttta agccttttat tgatcacttt aaaagacact
    12661 tgctccatat caaaagcggc tgtatcttct tccttagaat acgcaaaaac actcactcta
    12721 tcaaaaccaa agtctttaac aaactcacaa agctcttcaa aatctgcctc actttcacct
    12781 ggatgcccta cgataaagcc cgtgcgtaaa aagctatttg gcgcactttt cattaaattt
    12841 agcatttctt taagtcttgt gctatttgcc ccacgcttca tgattttaag catattatca
    12901 cttatgtgct gtaaaggcat atcaaaataa tttacaaaaa tttcagaagc tataatgcgt
    12961 ttgatcaaag cttcactcgc actcgtagga taaagatata aaattctagc cgctcttatg
    13021 cctttgattt tttccacctc accgattaag cgtataagcc catctttttc acccttatca
    13081 aacaaataag aactcgtatc ttgtgcaata aaagaaaagt ccttataacc tctagctacc
    13141 aaatctttaa gctcagctat aatgctactt atctcgcgag attttaactt gcctttaaaa
    13201 cttgggatag cacaaaaaga gcatttttga ttacaacctt cagcgatttt tataaaagca
    13261 tgggaatttg aacctgtgat aatacgtttg aaattttcac tctgtaaata agtcgaattt
    13321 gaaaataaat ttgttttttt aagtatcatt tcatcgattc tttcataatc acccacacct
    13381 gtgaaaagat caacctcagg aagttctttc ataagttctt cgcggtaacg ctgcatcaaa
    13441 caacccgtaa ccaccaaaag agaatctttt tttctttgtt cgtgcaaatc caaaatcgca
    13501 ttaatacttt ctttttttgc actatcgata aaaccacaag tatttacgat tataacatca
    13561 gctttgcttg gttcatcgca aagttcataa gcactaaggc gccctagcat gatctcacta
    13621 tcgactaaat ttttattaca acctaaagac ataagataaa gttttgacat ttttctcgct
    13681 tttttaaatt ttttgataaa ataattcctt aaaatcatat caaaataata attaggaaaa
    13741 atttatgaat gaaaaaaatg tagttttatt aggtgaaagt catttcgcat ttaaaaatgg
    13801 ggtaactcaa ggaattctag ataccggatt taagtgtttt aatctatctt taggcggaac
    13861 tccaagttta caaaatttat atgagttaat cagaaataaa aaacttttag aaaatgcgga
    13921 tttaattatt acaggatcaa atactcatga tattgcacaa tataattcta tcgatttatt
    13981 tccaaaaagc tatcaagtga tgaattggct ttacaaagaa ttatattttt taaagaaaaa
    14041 aattatttgt tttattgctc caacacctca aaaatggttg aataaaaact gtgtaaaata
    14101 tgtaaataca ctcca
//
LOCUS       DAPOLW010000035        13927 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.035, whole genome shotgun sequence.
ACCESSION   DAPOLW010000035 DAPOLW010000000
VERSION     DAPOLW010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13927
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.035"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            288..1538
                     /locus_tag="ROE18_000733"
     CDS             288..1538
                     /locus_tag="ROE18_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HDX3650931.1"
                     /translation="MNTPKWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVI
                     LVLAFPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILL
                     VYSANLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFL
                     VFPFIIFLFIFSLLLIPQWNLSLFANVDFSVISTSNFWVTLWLVIPVMVFSFNHSPII
                     SSLACYCKKEYGGYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNI
                     NILTFIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASNGRIQGK
                     FAQTLTAIITFAIAWLVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFR
                     NKFLDLFVLVMGIVAISAAIHDLL"
     gene            1553..2917
                     /locus_tag="ROE18_000734"
     CDS             1553..2917
                     /locus_tag="ROE18_000734"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HDX3650932.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVEV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLS
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAELEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEICAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKVIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGANAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(2925..3446)
                     /locus_tag="ROE18_000735"
     CDS             complement(2925..3446)
                     /locus_tag="ROE18_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650933.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDDL
                     NLNNEIFFYQSLKEGLFKENDEILVSNLGKKIILFRNFTQNCDNFNETKLKQILLLFF
                     LLLASVFFASLAMINEFGAIDLLFLTICLLLLVMGVINLGLLFKQIRILKSFSKEEMK
                     EFLSQRMKKYTKV"
     gene            complement(3427..4437)
                     /gene="ribD"
                     /locus_tag="ROE18_000736"
     CDS             complement(3427..4437)
                     /gene="ribD"
                     /locus_tag="ROE18_000736"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HDX3650934.1"
                     /translation="MSNFKIQGRQMKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKN
                     EKILAIKAHEKAGLAHAELNAIAHAFKSLRPEISLPKEANALHEFICKNHQGVFKDSI
                     AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDENKIASGGAEFLKKQGIEVEFDI
                     LKEEGKKLLKPFLKWQKGQFKLFKLALSMNGSPFGKIVSNELSRTYAHEIRAVIDLLV
                     VGGETIRKDCPILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEA
                     KFLMYEGGENFLKIFKDEIDMFLIFQSSSLNDEKNVTIPLNFKPLYRNFLGSDTYGIY
                     EL"
     gene            complement(4642..4729)
                     /locus_tag="ROE18_000737"
     tRNA            complement(4642..4729)
                     /locus_tag="ROE18_000737"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4693..4695),aa:Ser,seq:tga)
     gene            complement(4751..4824)
                     /locus_tag="ROE18_000738"
     tRNA            complement(4751..4824)
                     /locus_tag="ROE18_000738"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4790..4792),aa:Cys,seq:gca)
     gene            complement(4843..4931)
                     /locus_tag="ROE18_000739"
     tRNA            complement(4843..4931)
                     /locus_tag="ROE18_000739"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4895..4897),aa:Leu,seq:taa)
     gene            complement(4941..5015)
                     /locus_tag="ROE18_000740"
     tRNA            complement(4941..5015)
                     /locus_tag="ROE18_000740"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4981..4983),aa:Gly,seq:gcc)
     gene            complement(5087..5839)
                     /locus_tag="ROE18_000741"
     CDS             complement(5087..5839)
                     /locus_tag="ROE18_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650935.1"
                     /translation="MLAFFKGLGVGFLCLLLFVAGVVFNVEFLGKKDSNHDLYFSRNI
                     EVSNTLKPDILYANINFWANENLSSKITLDNSEKAEITNTFNQILERSKKENFCSGGS
                     FSLEPNFSYKDGIQTPKGQRFDANLECEFKENQLADFNKLLNDINSIIAKNNFISVST
                     PAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTYSLDLNKTCVLKNLQVNANTNIAPR
                     MLNAKSDNIELSSPIISKKEQILNAKALFICK"
     gene            5912..6931
                     /gene="mutY"
                     /locus_tag="ROE18_000742"
     CDS             5912..6931
                     /gene="mutY"
                     /locus_tag="ROE18_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HDX3650936.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLQKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFGAKLPKDVEDLKKLSGIGAYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKRAKELLNLNHAFDHNQALLDIGALVCVGKNAKCRICPLYDF
                     CQGKFHTELYPRAKKILYESLNLNLFLFEFNKKFAIQKSQDKLYKGMYNFPFFKEGEY
                     KLSKDMGFVGEFKHSYTKYKLNIKVYHQILNNENKNYEFKTLKELESTALSALSLKAL
                     KLIKL"
     gene            complement(6917..8176)
                     /locus_tag="ROE18_000743"
     CDS             complement(6917..8176)
                     /locus_tag="ROE18_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDX3650937.1"
                     /translation="MQELTRTKKIRSIIAASSGNLVEWFDFYIYAFTATYFAHTFSTS
                     DNPVIQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVISVVLMALGSFMIAAL
                     PSKDTVGDLAIILLLIARLIQGLSVGGEYGIAATYLSELATEGKRGFYSSFQYVTLIG
                     GQLLAVASISIMFLFFSIDDMKDYAWRILFVIGGILALGSLFVRKMMNESATKLHQHE
                     DRGTLKALCKSWKPFLMVLGVTSGGSLAFYTITTYTKTFMENTGMDKMLVNNLFLGAL
                     FILMIIQPLFGYIGDKIGHKRSLIVFCILALVGIYPIFSLIANNAQNNPSLTFMLVVL
                     LFVILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAVFGGSAPWVALQFKNAGIEN
                     GFFIYIAIFTIIMLIATLCLPKKSELN"
     gene            8342..9199
                     /locus_tag="ROE18_000744"
     CDS             8342..9199
                     /locus_tag="ROE18_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HDX3650938.1"
                     /translation="MKFKKIYIELSDICGLKCDFCPSQKGIRGVMSEEKFQNLAYEIS
                     NKAELFTFHLLGDPLLLPNLENYLKIAKDEAMKLEITTSGFYLNSKNQALLLGYENIH
                     QINISLMSFLSQSKISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNL
                     KIYEFLAKEFEAKIDANLSKNRLQRHILLHQNKLFKWPNLKDEPLYKKGKCHALKEQI
                     GILSDGSLVPCCLDTKADINLGNVFENNFDKLFRSPRIKMMKKAFEEDKRIEKLCQTC
                     EFFKARLGD"
     gene            complement(9196..10002)
                     /locus_tag="ROE18_000745"
     CDS             complement(9196..10002)
                     /locus_tag="ROE18_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDX3650939.1"
                     /translation="MKKILIIMSLFLIALNAKERLVVLDPASIETLFMLKAEDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAERLEDITKNITTLGQITKKEKEAELLKQEFNQKFKKLSDKPLNKSAIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGINAKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTPILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(9999..10775)
                     /locus_tag="ROE18_000746"
     CDS             complement(9999..10775)
                     /locus_tag="ROE18_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDX3650940.1"
                     /translation="MLKIHNLSFAYHQKDLLKNIHLELKNQAFIGILGPNGSGKSTLL
                     KLILKNLSPNKGVISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYP
                     NLKHAFSSYSKEDILEIKEFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLNLCEKLVKEKNIAVVAILHDLNLASIFCDKILFLKEGEIK
                     YFGTSKELFTQEILKEIYDLNCEIIYKNSKPYILALKEKK"
     gene            complement(10775..11761)
                     /locus_tag="ROE18_000747"
     CDS             complement(10775..11761)
                     /locus_tag="ROE18_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDX3650941.1"
                     /translation="MLNLNTHSKILVIIGLLVAYIIASFTALCLGDENLNPKELFSYI
                     FSQDEILRQIIIDGRLPRIIMAILIGMLLASSGAITQNVFSNPIADPYIIGIASAATF
                     GAVLAYLLKLNDYYYGILGFVCSAFFALGVFKISSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGNASWFRVGILILPLIFCLFYFYAHKNELNILLSGDD
                     EARNLGVNAQKLKINLLIVSSLAVSFAVAFSGLIGFVGLIIPHTIRLLLKNYNNALVI
                     PLCTAFGGLFLLICDTLARTLLAPVQIPIGILTAFFGAPIFLYLALSARRFL"
     gene            complement(11736..13865)
                     /locus_tag="ROE18_000748"
     CDS             complement(11736..13865)
                     /locus_tag="ROE18_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDX3650942.1"
                     /translation="MHPNKKAFKLSLFALLLITNLNAQESNKAINLQKVVVSTTGFEQ
                     DADSNLRNVISIEGKDLQNKGYVSLEQALERISSISFVNFGLGRNIDMRGQGNKSNIA
                     VKVMIDGHAINVLDNSHGVTPLDSINLDNVERIEIIPGGGSVLYGSGTIGGVINIITK
                     KQKSDAFAINLKSSAYDHGGLGGNLGINGAKQINENLAFSFDIQSFNLDGYQEGYNEK
                     GYFINTKTYIDINDNSDLTLGYNYFKSKNTSSGYLTKAQAQSDPTQKGKSDNITQINR
                     PEISLDYHYYFDDIWEFNLEAFWQNQKINYLKDVSTMSYMNMSLPVYQNGSGFEDTLT
                     GISLKNKLNYANNSYFIFGYEFANHDAKRKSLVYYSVPSVINYHRMTTLIDMTKQSHS
                     IFALDSHNFNEFFTLSGGARYEFSSYNTDRSYRNEMSMNGRPPSPTIIDSTTLFDTNK
                     NANNFAFEITPNFKYSDTGKLYIKYERGFVSPSPAQFVNKDKNSQKYYSANLNPEIFD
                     TFELGIDDFWWDFYGFNLTLFYTLSKDEISYLGNPHSTSGSWWKYYNIDQTRRLGVEL
                     SLSQNFLDDDLIFRESLTYLDAKISKGVNDGMRIPYVSKIKATAGLEYAWNKNFSNFI
                     DLTYFSRAKDGGTIDENTGKMSKNSWIRDYFLTDIGMKYNYKKLQILAGIRNLFDKRY
                     YTYQDSINDQYLVGNGRNYYVEFKYAF"
BASE COUNT         4705 a         2058 c         2211 g         4953 t
ORIGIN      
        1 aaatatccta ggtcaaaaat tagattaatt tttgaaaatt taactccctt agaaaatttg
       61 atgcaaaaat ttggaagcat agtcttccaa atttttattt tttgattgca aaactcaaaa
      121 tatatttagt tttaaaataa tactgtattg atacaagtga ttgttttttt ataaaattaa
      181 atttacaaaa tgttacataa gatttaaaat atttttttta aaaaataatt atttataaat
      241 attttgctaa aataaaagag atgtaatctt aaatttaagg aagaataatg aatactccta
      301 aatggactag tcacgataca aggtgggttt tatctctttt tggaacagct attggagccg
      361 gcgtactttt gttgcctatt agtgctgggc ttggtggatt gatacctttg ttagttatac
      421 ttgttttagc ttttcctatg acttacttag ctcatagaaa tttatgtcgc tttgtgcttt
      481 caagttctaa tccaaaagat gatattactt ttgttgcaga aagttatttt ggcaagggcg
      541 gtggattttt aattacactt ttgtattttt ttgctatttt gcctatttta ttggtttata
      601 gtgctaatct tacaacaact ttgcttgagt tcttaatcaa tcagttcaat ttcaatgcag
      661 atcttactca tgctgctcgt tggtgggtga gttttttgat tgttggagtt ttggttttga
      721 tttctattct tggtgaaaat gttgtaacaa aagcaatgag ttttcttgtt tttcctttta
      781 ttatattttt atttattttt tcattgcttt taattccaca atggaattta tcgttatttg
      841 caaatgttga tttttccgta atttcaacaa gtaatttttg ggttacttta tggcttgtta
      901 ttcctgtgat ggtatttagt tttaatcact ctcctatcat ttcttcactt gcttgttatt
      961 gtaaaaaaga atatggtggt tatgctgaac ctcgcgctag aaaaattatt tctttggcaa
     1021 ttattcttat ggtttttgtt gtaatgtttt ttgttttttc ttgtgcttta acctttacac
     1081 cagaagattt tgcatcagca aaagatcaaa atatcaatat tcttactttt atagcaaata
     1141 aatttcctga agtttcttta ctagcttatg ttggacctat tgttgcactt gtggctatta
     1201 gcaaaagttt cttagggcat tatcttggtt ctcaagaagg cttaaatggt attttatata
     1261 aagcaagtaa tggtagaatt caaggtaaat tcgctcaaac tttaacagcg atcattacct
     1321 ttgctatcgc gtggcttgtt gcgtataaaa atccaagtgt tataggaatt atcgaggcta
     1381 ttggtggtcc tgttttggct attttgcttt tcttaatgcc gctttattgt atttatcgtt
     1441 ttgatatttt ggcaaggttt cgtaataaat ttttagatct ttttgttttg gtaatgggga
     1501 tagttgcaat ttctgctgca attcatgatc ttttataaat taaggataaa aaatgagtaa
     1561 tttaagcatt tttaaaatag gtgttggccc ttcttcttct catactttag ggcctatgct
     1621 tgctggaaat ttattttgta aaaaagttgc taaaaagctt gatgaaattg atagagttga
     1681 ggttactctt tatggttctt tgtcgttaac aggcaaagga cacttgagtg ataaggctgt
     1741 gatttggggg ttaaatggct tagaagctaa aaatttaagt gcggcaatac aagatgaagt
     1801 aaataaaaat gctattgaaa atgctcaaat tgatttttgt ggcgagaaaa aacttagttt
     1861 taattatgaa aaagatttga tattttctaa agatttttta cctttacatg agaatggtat
     1921 gaaaattaaa gcttatgatt gtaaaggtgg gttagttgat gaggaaactt attattctgt
     1981 aggtggaggc tttgttttaa cagctgcgga attagaaaaa aaaggtaaaa attctaacca
     2041 aaataaaaag aaaaaactag atatagagct taataacgct aaagaagctt tagagctttg
     2101 cgataaaaga gattgggatt tggcagagct ttcttatcgt tatgaattgc aatttcacac
     2161 taaagaggaa atttgtgctt attgtcttga aatttgggaa gtgatgcaag aagtgtatta
     2221 taatggtacg cacccgaatg aagattattt gcctggaaaa cttcatttaa agcgtagagc
     2281 taaaggactt aaagaaagag tagcgatgac agctgatcct atgggtatta tcgattttat
     2341 ttctttatat gctattgcga ttgctgaaga aaatgctagc ggagcaaaag tcgtaaccgc
     2401 accaacaaat ggagcatgtg ctgttatccc tgctgttatg ctttatctta aaaatcatac
     2461 tataggtttt agtgatgaaa aggttataga gtttttatta acagcaatgc ttataggttc
     2521 tttttataag aaaaatgcaa gtattagcgg agcagaagca ggttgtcaag cagaaattgg
     2581 tagtgctagt tctatggcag ctgcggctat ggcaacagtt ttaggagcta atgcttttaa
     2641 agcatgtaat gctgctgaaa tggcaatgga acatcatcta ggtctaactt gcgatccagt
     2701 tgcaggactt gtgcaaattc cttgcataga aagaaatgcc tttggagcca ttaaggccat
     2761 aagtgctgct agaatggcaa tgacacgcaa atccactcct atggtaagcc ttgatgaggt
     2821 tatagaaacc atgtatgaaa caggaaaaga tatgaattat aaatataaag aaacttcttt
     2881 aggtggtctt gctacaaatt taaaaacagt atgctaaagt gtttttacac tttagtgtat
     2941 tttttcattc tttgacttaa aaattctttc atttcttctt tggaaaaact tttaagaatg
     3001 cgaatttgct taaaaagcaa gccaagattg attactccca tcactaaaag caataagcaa
     3061 atcgttaaaa aaagaagatc tatggctcca aattcattaa tcatagccaa acttgcaaaa
     3121 aatacactcg ctaataacaa aaaaaataaa agcaatattt gttttaattt tgtctcatta
     3181 aaattatcgc aattttgagt gaaatttcta aaaagtatga tctttttacc caaatttgaa
     3241 actaaaattt catcattttc cttaaataag ccttctttta aactttgata aaaaaagatt
     3301 tcattgttta aatttaaatc atctttgtag cttgataggg tgtagtcctt gtaaaaaaag
     3361 gattttaatt catttttctt ttctatttta aataatctta aatcatttct cgcataaaaa
     3421 aatccactaa agttcataaa tgccataagt atcactccct aaaaaattcc tgtaaagtgg
     3481 cttgaaattt aaaggtattg taacattttt ttcatcattt aaacttgaac tttggaaaat
     3541 caaaaacata tctatttcat ctttaaagat tttgagaaaa ttttctccac cctcatacat
     3601 taaaaattta gcttcacttg gaatttgggt ataaatttgg cggtttggaa ctttaaataa
     3661 agggatattt ttatcaaaat tatctatatt ttgacggctt aagatacaaa gattaggcgc
     3721 ttttgctttg caaagcctag catctaatat agggcaatct tttcttatgg tttctccacc
     3781 gactacaagc aaatcaatca ccgctctaat ttcatgtgca taagtgcgac ttagctcatt
     3841 gcttacgatt ttgccaaaag gtgagccgtt catagaaagg gctaatttaa aaagtttaaa
     3901 ttgccctttt tgccatttta aaaaaggttt taaaagtttt tttccttctt ctttaagtat
     3961 gtcaaattca acctctatac cttgtttttt taaaaattca gccccaccgc ttgcgatttt
     4021 attttcatct ttaacgctga tgaaaatttt tttaaaacct agctcgctaa agagttttgc
     4081 acaaggaggt gtttttcctt gatgagagca aggctcaagc gttacaaaag ctatgctatc
     4141 tttaaataca ccttgatggt ttttgcaaat aaactcatgt aaggcgtttg cttctttggg
     4201 caatgaaatt tcaggtctta agcttttaaa agcatgagct atggcattaa gttccgcatg
     4261 agctaatcca gctttttcat gagcttttat ggctaaaatt ttttcatttt tatctaagat
     4321 tacacagcct acagccggat ttggataggt taaaaactga tatttccaag cctcatttaa
     4381 agctaaattc atataaaatt ctttcatttg cctaccttgt attttaaaat ttgacatatt
     4441 tttaaaattt tatatttttg ttttaagata acaaattcta aatttccatt tgtatttctt
     4501 atttttaatt atattagcca tagtttttct aagttttttt aggatataac aaaaatagta
     4561 agaccgaagt attatttttc atttgtagta tcctttataa tttcaggaat aatataagct
     4621 tgataaacta gaaagtcttg gtggccggga gaaagggatt cgaacccctg gaggtgtgac
     4681 cctcaacggt tttcaagacc gccgctttcg accactcagc catctcccga taaagtaaag
     4741 ttttgccttt tggaggcgac atccggattc gaaccggaga tcaaggcttt gcaggcccat
     4801 gccttaccgc ttggctatgt cgccctgata atgttgaaaa agtggtgccc gaggccggac
     4861 ttgaaccggc acggaagaaa aattccgagg gattttaagt cccttgtgtc taccaattcc
     4921 accacccggg cgggtgatta tggagcggga aacgagattc gaactcgcga ccccaacctt
     4981 ggcaaggttg tgctctaccc ctgagctatt cccgcataaa tttctgaaag aattgaagat
     5041 aaaagtatag caaaataaac ttaaaaggag tttattttgc tataagttat ttgcaaataa
     5101 ataaagcttt tgcatttaaa atttgttctt ttttgctgat aattggagat gaaagttcta
     5161 tattgtcaga tttcgcattt agcattctag gtgcgatatt ggtattggca tttacttgta
     5221 aatttttcaa tacacaagtt ttattaagat ctaaagagta agttttttca tattcgtatg
     5281 atgtttttaa aagctctttg tagagatttt ctttgttgtt gtttagtgta tcttttgaaa
     5341 attttgtttg tatggctggt gttgaaacgc tgatgaaatt atttttagct atgatagaat
     5401 tgatgtcatt taaaagcttg ttaaaatctg caagttggtt ttctttaaat tcacattcta
     5461 aattcgcatc aaatctttga ccttttggag tttgtatacc atctttatag gaaaaattag
     5521 gttctaaaga aaaacttcct ccgctacaaa aattttcttt ttttgagcgt tctaaaattt
     5581 gattgaaagt atttgtgatt tcagcttttt cactattgtc taatgtaatt tttgaactta
     5641 aattttcatt tgcccaaaaa ttaatatttg catataaaat atcgggtttt agcgtattgc
     5701 ttacttctat atttcttgaa aaatataaat catgattaga gtcttttttg cctaaaaatt
     5761 ctacattaaa aactactcct gcaacaaaaa gtaataaaca taaaaaacct acacctaaac
     5821 ctttaaaaaa agctaacatg gatatcctta ataatttaat ttgagctaat tttagcaaaa
     5881 aattttaaaa ttttttgtta tactctcatt tatgcaaaaa aaagagcttg aaaaactaca
     5941 agaaaattta cttctttggt atgaaaaaaa tggacgcaaa actttgcctt ggcgtaattt
     6001 acaaagtcaa aattgtgatg aaagtttaaa gcatattgat agagcttatg gggtttatat
     6061 cagcgaaatt atgcttcagc aaactcaagt taaatcagtt ttagaaaggt tttatttccc
     6121 ctttttgcaa aaatttccta ctttagaaag tttggctaat gctaatgaag acgagctttt
     6181 aaaggcttgg caaggacttg gttattacac tcgtgctaga aatttaaaaa aggcagcctt
     6241 agaatgcgtg gataagtttg gggctaaatt acccaaagat gttgaggatc taaaaaaatt
     6301 aagtggtata ggagcttata cagcaggcgc tatagcttgt tttggctacg atcaaaaggt
     6361 ttcttttgtt gatggcaata tacgccgtgt gctttctcgt ctttttgctt tggaaaatcc
     6421 tagcatgaaa gaacttgaaa aaagagctaa agagctttta aatttaaatc atgcctttga
     6481 tcacaaccaa gctttgcttg atataggggc tttggtttgt gtgggtaaaa atgcaaagtg
     6541 taggatttgt cctttgtatg atttttgtca aggcaaattt catacagagc tttatccaag
     6601 agctaaaaaa atactttatg agagtttaaa tttaaatctt tttttgtttg aatttaataa
     6661 aaaatttgcg atacagaaaa gccaagataa gctttataag ggtatgtata attttccttt
     6721 ttttaaagaa ggagagtata aactttctaa agatatgggt tttgtagggg agtttaagca
     6781 cagctatact aagtataaac ttaatatcaa ggtttatcat caaattctaa acaatgaaaa
     6841 taaaaattat gaatttaaaa ccttaaaaga gttagaaagt accgcacttt cggcactttc
     6901 tttaaaagcg ttaaaattaa ttaagctctg attttttagg caaacataaa gtagctataa
     6961 gcatgatgat tgtaaaaata gctatatata taaaaaagcc attttctata cctgcatttt
     7021 taaattgtaa agcaacccaa ggagcagatc ctccaaaaac agcatttgaa atagcataac
     7081 ctaaacctgt ccctaaagct cttacatgtt caggaaaaag ttttgcttta aaaatcccag
     7141 caactgaagt ataaaaactt aaaataacaa acaataatac caccaacata aatgtcaaag
     7201 aaggattatt ttgtgcgtta ttggctataa gtgaaaaaat aggataaatt cctaccaatg
     7261 ccaaaataca aaatacaatt aaagatcgtt tgtgacctat tttatctcct atatatccaa
     7321 aaagaggttg aatgatcatt agtataaata aagcacctaa gaaaagatta ttaacaagca
     7381 ttttatccat acccgtattt tccataaaag ttttagtata agttgtaatg gtgtaaaaag
     7441 ctaaagaacc tccagaggta accccaagta ccattaaaaa aggtttccaa gatttgcata
     7501 atgcctttaa agtaccacga tcttcatgct ggtgaagttt tgtagcactt tcattcatca
     7561 tttttcttac aaaaagcgag cctagtgcta aaattccgcc tattacaaaa agtattctcc
     7621 aagcataatc tttcatatca tcaatgctaa aaaataaaaa cattatacta atgcttgcaa
     7681 cggccaaaag ttgaccacct attagggtta catactgaaa agatgagtaa aaaccgcgtt
     7741 ttccttccgt agcaagttct gaaagataag tagctgctat gccatactcc ccgcctacac
     7801 taagaccttg aataagtctt gctattaaaa gcaagataat agcaagatcg cccactgtat
     7861 ctttgcttgg taaggctgct atcataaaag agcctaaagc cattaaaacc actgatataa
     7921 ccatagattt tttacgacct actttatcag ctaaagagcc aaaaagccaa gagcctatag
     7981 gacgcataaa aaatcctgct gcaaaaaccc caaaggcatt gatttgctgg ataacaggat
     8041 tatctgaagt tgaaaaagta tgagcaaaat aagttgctgt aaaagcatag atataaaaat
     8101 caaaccactc tactaaattt ccgctacttg cagcaataat agagcgaatt tttttcgtgc
     8161 gagtaagctc ttgcataaac ccttccttaa ttttagattt ttatttaagt atagtgtgat
     8221 ttttgtttaa tatatttaaa aataaagaag agaaataaaa aagataaaaa tatcgataaa
     8281 aatgttacat attttaataa atttcataaa ttttggtaaa atgtttactc taggaaatat
     8341 aatgaaattt aaaaaaatat atatagaatt aagcgatatt tgtggtttaa aatgtgattt
     8401 ttgtccttct caaaaaggaa ttcgcggggt aatgagtgaa gaaaaatttc aaaacttagc
     8461 ttatgaaatt tctaataaag ctgagctttt tacctttcat cttttgggtg atcctttgct
     8521 tttacctaat ttggaaaatt atctaaaaat cgcaaaagat gaagctatga aacttgaaat
     8581 cactacaagt ggcttttatc taaattctaa aaatcaagct ttattgttag ggtatgagaa
     8641 tatccatcaa atcaatattt ctttaatgtc ttttttaagt caaagcaaaa tttctttaga
     8701 acagtatttt aagcctattt tagaactttg caaaaagcat ttagagcaaa aaagcctttc
     8761 ttttatcaat ctaagacttt ggaatttaga tgctaatttt aaagcaccta agtcaaattt
     8821 aaaaatttat gagtttttag ccaaagaatt tgaagctaag atcgatgcaa acttaagtaa
     8881 aaatcgcttg caaagacata ttttgcttca tcaaaataaa ctttttaaat ggccaaattt
     8941 aaaagatgaa cccctttata aaaaaggaaa atgtcatgct ttaaaagagc aaattgggat
     9001 tttaagtgat ggaagtttgg tgccttgctg tttggatact aaagcagata ttaacttggg
     9061 aaatgttttt gaaaataact ttgataagct ttttagatca ccgcgtataa agatgatgaa
     9121 aaaagctttt gaagaagata aacgcataga aaaactttgt caaacttgcg aattttttaa
     9181 agcaagattg ggtgattaaa aattgttatt ttctagcttt gttttaaatt cttgaattct
     9241 atctattatc ttaggactaa gacgtaataa tataggtgta tctttgttaa aataaatact
     9301 tcctgtttta actgctttgg tatttttcaa taaagcattt gtatctaaaa gattgttttt
     9361 agcattaatt ccaagaatga gtatgtctgg attttgtttc agtatgtatt ctgctgatat
     9421 aacaggtctt gaaatttgac tttgcgggct taaattttta atccctataa gtcttaaaat
     9481 atcagctatt aaagaattat cattaaaggc cattaaaggg ttgctagaat aaagataaat
     9541 cgcactttta tttaggggtt tatcgcttaa ttttttaaat ttttggttaa attcttgttt
     9601 taaaagctct gcttcttttt cttttttggt gatttggcct aaggttgtga tattttttgt
     9661 tatatcttct aaacgctcgg cttttaaatt gatacttttg ataccaaaat ttttaagtcc
     9721 ttcttctaaa tttaaagaat aagagcttaa aatcaccaaa cttggtttta atgctactat
     9781 tttttcaagc gaaggatttg aaaaagtgcc tacgcttgta agttttgagg tttgatcttt
     9841 aggataaata tttgagtgtt gtaaagtagc aatgcctacg atttgatctt cagccttaag
     9901 cataaaaagg gtttctatgc ttgcaggatc aagcactaca aggcgttctt ttgcatttag
     9961 tgcgattaaa aacaaactca taataattaa aatttttttc attttttctc ctttaaagct
    10021 aaaatataag gtttagaatt tttataaata atctcgcagt ttaaatcata aatttctttt
    10081 aaaatttctt gagtaaaaag ctctttgctc gttccaaaat actttatctc cccttctttt
    10141 aaaaaaagga ttttatcgca gaatatagaa gctaaattta aatcatgcaa gatagcaaca
    10201 acggctatat ttttttcttt aactagtttt tcgcaaaggt ttaaaagctc tatagcatag
    10261 tttaaatcaa gggctgaagt gggttcatct aaaaaaagaa tttttggctt tttaagcaaa
    10321 gctcttgcta aaagcattct ttgaaattca cctccgctta aagaaagtat gcttctttct
    10381 agaaaatttt caagtcttaa atccttagca aattctttaa tttctaaaat atcttcttta
    10441 gaataagaac taaaagcgtg ttttaaattc ggatatttac tcattaaaag cacatcgatg
    10501 acttttaaag gggtgtttaa ttctgatttt tgaggcacaa agccacaaat tttggcaaat
    10561 tctttaagag aaaaatcctt gatatttgtg ttaaaaagac ttatcactcc tttatttgga
    10621 cttaaatttt taagtataag ttttaaaaga gtgcttttgc ctgagccatt tggccctaaa
    10681 attcctataa aagcttggtt tttaagttct aaatgaatat tttttagtaa atctttttgg
    10741 tgataagcaa agcttaaatt atgtattttt agcattataa aaatctccta gcgcttaaag
    10801 ctaagtataa aaaaatagga gctccaaaaa atgcagttaa aattccaatc ggaatttgca
    10861 caggagctaa aagagttctt gctaaagtat cacaaataag taaaaataat cctccaaatg
    10921 ctgtacataa agggataact aaggcattat tataattttt aagcaaaagt cttatagtat
    10981 gaggaatgat gagtccaaca aagcctataa gtccgctaaa agcaaccgca aaagatacag
    11041 ctaaggatga gacaatgagt aaatttatct ttaatttttg agcatttacc cctagatttc
    11101 tagcttcatc atctccgctt aaaagtatgt ttaattcgtt tttatgagcg taaaaataaa
    11161 acaaacaaaa aattaaaggc aagattaaaa ttcccacacg aaaccaagaa gcattgccta
    11221 tatttcccat aagccaagcg actattttaa aagaatcctc gcctataaga taagtgaaaa
    11281 aagaagtaaa agcccctaaa aaagatgaag ctgctatgcc gataatgagt aaagttgcta
    11341 tagaagcttt agaagaaatt ttaaaaactc ctagggcaaa aaaggcagag caaacaaaac
    11401 ctaaaattcc ataataataa tcattcaatt ttaacaaata cgccaaaacc gctccaaagg
    11461 ttgccgcaga agctatacct atgatataag gatcagctat aggatttgaa aatacatttt
    11521 gagtgatagc cccactacta gctaaaagca taccgattaa aatcgccatt ataatccgtg
    11581 gtaagcgtcc atctatgatt atttgtctta aaatttcatc ttggctaaag atatatgaaa
    11641 aaagctcttt tggatttaaa ttctcatctc ctaagcaaag tgctgtaaaa gaagcgatta
    11701 tataagctac caaaagccct ataatcacta aaattttaga atgcgtattt aaattcaaca
    11761 tagtagtttc tgccatttcc aactaggtat tgatcattta tactgtcttg ataggtgtag
    11821 tatcttttat cgaaaagatt gcgaattcct gctaaaattt gtagtttttt ataattatat
    11881 ttcatgccaa tatctgttaa aaaataatcc cttatccaag aatttttaga catttttcct
    11941 gtattttcat ctatagttcc accatctttt gctctagaaa aataggttaa atcaataaaa
    12001 tttgagaaat ttttattcca agcgtattca agcccagctg tggctttgat ttttgaaaca
    12061 taaggaattc tcatgccgtc attaacacct ttagaaattt tagcatcaag ataagttaga
    12121 ctttctctaa agattaaatc atcatctaaa aaattttgac tcaggcttaa ttctactcct
    12181 aaacggcgag tttgatctat attataatat ttccaccaag atccactagt agaatgaggg
    12241 tttccaagat aagaaatttc atctttgctt agggtgtaaa ataaagttag attaaagccg
    12301 taaaaatccc accaaaaatc atcaatacct agttcaaagg tatcaaagat ctcaggattt
    12361 aaatttgcag aataatactt ttgtgaattt ttatccttgt tgacaaattg tgctggactt
    12421 ggagagacaa aacctctttc gtatttgata taaagctttc ctgtgtctga gtatttaaaa
    12481 tttggagtga tttcaaaagc aaaattattg gcgtttttat tggtatcaaa aagtgttgtt
    12541 gagtctatga tagtaggtga tgggggtctt ccgttcatac tcatttcatt tctataagat
    12601 ctatcggtat tataagagct aaattcatat ctagctccac cggataaagt aaaaaattca
    12661 ttaaaattat gagaatcaag agcaaaaata gaatggcttt gtttagtcat atctattaaa
    12721 gttgtcatcc tgtgataatt tatgacactt ggaacgctat aatacaccaa actctttctt
    12781 tttgcatcat ggtttgcaaa ttcataacca aaaataaaat aagaattatt tgcataattt
    12841 agtttgtttt ttaaacttat ccctgtaagc gtgtcttcaa aaccacttcc attttgatat
    12901 acaggaagac tcatattcat gtagctcatt gtagaaacat cttttagata attgatcttt
    12961 tgattttgcc aaaaagcttc taggttaaat tcccatatat catcaaaata gtaatgataa
    13021 tccaaagaaa tttcagggcg attgatttgt gtgatattat cactcttacc tttttgggtt
    13081 ggatcgcttt gagcttgtgc ttttgttaga tagccactgc tggtattttt gcttttaaaa
    13141 taattataac ccaaagttaa atcgctatta tcattgatat caatataggt ttttgtgttg
    13201 ataaaataac ctttttcatt ataaccttct tgatatccat caaggttaaa actttgtata
    13261 tcaaagctaa aagctaaatt ttcatttatt tgtttggcac cattgatacc taaatttcca
    13321 cctagtccac catgatcata agcactgctt tttaaattta tagcaaaagc atctgatttt
    13381 tgtttttttg taatgatatt aatcacgcca cctatagtac cacttccata aagcacagat
    13441 ccacccccag gtatgatttc tatgcgttct acattatcta aattgatact atctagtggg
    13501 gttacaccat gggaattatc aagaacatta atagcatgcc catcaatcat aacttttaca
    13561 gctatattgg atttatttcc ttgtccacgc atatctatat tgcgtccaag tccaaaattt
    13621 acaaaactaa tgctcgaaat tctttctaag gcttgttcta aagaaacata acctttattt
    13681 tgtagatctt tgccttctat gctgattaca ttgcgtaaat ttgaatccgc atcttgttca
    13741 aaacctgttg tactaacaac aactttttgt agattgatag ctttatttga ttcttgtgca
    13801 tttaaattag ttattagcaa taatgcaaat aaagataatt taaaagcttt tttatttggg
    13861 tgcaaatttt actccttaaa taaaataaat aatgataatt tatatcataa taatttagaa
    13921 ataaatt
//
LOCUS       DAPOLW010000036        13681 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.036, whole genome shotgun sequence.
ACCESSION   DAPOLW010000036 DAPOLW010000000
VERSION     DAPOLW010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13681)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13681)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13681
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.036"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(432..1280)
                     /gene="metF"
                     /locus_tag="ROE18_000749"
     CDS             complement(432..1280)
                     /gene="metF"
                     /locus_tag="ROE18_000749"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HDX3650943.1"
                     /translation="MCSFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEVASLIQEEYQIPSIVHLPCIHSSKEKITQILQKCKEKNLNQILALRGDIC
                     ENLKKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHHLKTKVNAGTD
                     KLITQLFYDNEDFYTFKQNCALADIDIPIYAGIMPITNKRQVLKISQLCRAKIPPKFV
                     KILEKYENNTLALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KKELHA"
     gene            complement(1290..3554)
                     /gene="metE"
                     /locus_tag="ROE18_000750"
     CDS             complement(1290..3554)
                     /gene="metE"
                     /locus_tag="ROE18_000750"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HDX3650944.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIVALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALVQ
                     QYGFAKDKILFAGLINGKNIYANDYAKSLKLIKELQKYTQNIILNTSCSLLHVPYSTE
                     FESKLDSSYLKLFAFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECLQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRTKPITLAWSKFAQSLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLSLLDTLKAIRF
                     KTEVGPGVYDIHSPRVPSVEELSLTIEKILNKLPKEQIWINPDCGLKTRAYEEVIASL
                     KNLVTATQKIREQL"
     gene            complement(3566..4336)
                     /locus_tag="ROE18_000751"
     CDS             complement(3566..4336)
                     /locus_tag="ROE18_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDX3650945.1"
                     /translation="MTLFTKAFCVATLFTGFAWANEELKVGSSITPHADILRFIKSAL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKHKEFHPKEGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFVELKDAQLTRSLDDVDYSLINSNFAILAGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSNEVKKFIEEKYQGALIPTF"
     gene            complement(4347..5339)
                     /locus_tag="ROE18_000752"
     CDS             complement(4347..5339)
                     /locus_tag="ROE18_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
                     /protein_id="HDX3650946.1"
                     /translation="MNLPILDLQAYEKDKSTFLKNLREIASKIGFFYLINTSIDKNLN
                     EKLFKLGKEFFNLSRSSKELISMVHSPQFRGYTSEGFEYTAGSKDYREQLDIGTERDA
                     LNWNLNSPLWQRLEGPNLWPSEIPELKKTFLTWHKQTKKACLKLLKAFAQALDLPNNA
                     FDKLYGENSYEHCKIIHYPKSSKNITQGVGSHKDGGLITFVFQEKQSGFEAFIDGKWL
                     SIPPLENSVVVNIGEFLELATNGYLKATIHRVNLSPKERFSVAYFLGVQLDKDIPIFK
                     LNPELAKESKGVDTDPKNPLLRNVASNYFKRMIRSHPDVASIYHSDLIEKFSFA"
     gene            complement(5651..6145)
                     /gene="luxS"
                     /locus_tag="ROE18_000753"
     CDS             complement(5651..6145)
                     /gene="luxS"
                     /locus_tag="ROE18_000753"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HDX3650947.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSIAK
                     AWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIINNKELK
                     LENA"
     gene            6260..7678
                     /gene="gatB"
                     /locus_tag="ROE18_000754"
     CDS             6260..7678
                     /gene="gatB"
                     /locus_tag="ROE18_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HDX3650948.1"
                     /translation="MFEVVIGLEVHAQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHESNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKVRFIDKLGIKESDAEVLISSLEMSRFFESLISQNL
                     NPKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKDKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            7675..8571
                     /locus_tag="ROE18_000755"
     CDS             7675..8571
                     /locus_tag="ROE18_000755"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HDX3650949.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLVFALSSQGMRAWLKENFINKGQKILIASKGIEDQSCQFLDEIFLDFVPKEN
                     FCVLSGPSFAAEVMQKLPTALMISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGKFFGAKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILVELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGKSVQEATQSLLKQND"
     gene            8581..9759
                     /locus_tag="ROE18_000756"
     CDS             8581..9759
                     /locus_tag="ROE18_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HDX3650950.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIGSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEESFALFLQNLAQR
                     KMQIFSSVRVKDANGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQIAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALREALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSVCEFISLCYTFLIKEGFLNWQELCRFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKMHIIKGKNILEK
                     "
     gene            complement(9767..11293)
                     /locus_tag="ROE18_000757"
     CDS             complement(9767..11293)
                     /locus_tag="ROE18_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HDX3650951.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWVASPLLGGIVAYIIYSYIDKKILKPSEKLNDDLKNIKKE
                     RKKFKEEYFLNLKTKSQEEQIKELSAIALDEEEQENNFYRNKMKEFKDQEKDIDIYSI
                     LKTHMPIIACIAAAIISAMFLFKGLNNVSTLDILQNFWIIGIIGTISYVVTFAIVKIV
                     KKTELNKTTDRIFSWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINATSPV
                     PFAALAMFGVALVVGLWFLGKEVITTVGSKLATIRPTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAILGIGVYNKNANWIMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGI
                     "
     gene            11435..12241
                     /locus_tag="ROE18_000758"
     CDS             11435..12241
                     /locus_tag="ROE18_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HDX3650952.1"
                     /translation="MRGIFYIIALFSLLNADELTEALVKNNNQNSWEHFDYKNTKEAP
                     KIQEENVDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENAQVKNLSSLYEGENNSLL
                     FQKELFVAQNNYNYSGGLINRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIK
                     AYSNYYIPNEAEKNLQLGMSFVIPTYTAFAFDISKDNDKTNYQVSYSPYSVFSLNLLR
                     RDYSARETVDDTVVQVGFSFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
     gene            complement(12238..13614)
                     /locus_tag="ROE18_000759"
     CDS             complement(12238..13614)
                     /locus_tag="ROE18_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HDX3650953.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIITGIVLGYTDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLDPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRIEDKQAIQRVFEVVQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVTAIGILLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
BASE COUNT         4631 a         2039 c         2227 g         4784 t
ORIGIN      
        1 aagctataga tagttacatg ctatttttat ataaaaagtg gttgtgctat ggatatatag
       61 tgttttatag ggatagttac atggttaaaa aaatataaga atattttaag caaaaatgta
      121 actatcctag agagtaaaaa acacttttgg gatataaaat ttaaaatcaa agctcgtatt
      181 tatatgcctt ttaaacagta tttaatcact ttcttgggac aaaacggaca ttttaggata
      241 tttgggatat tttacacttt aaattaggaa agataaaaag tcgtttttat atgctctaaa
      301 agcctattat ttgggatttt tgctaaaatt atttagggat agttacatgt tctttttaaa
      361 atacccctta caaaaaccat aaactaaaaa atgaaaataa gttaagataa aagcaaaaaa
      421 tagtttattt tctaagcatg aagctctttt ttaagcaaat gctttacagc ttcataaatt
      481 ttaatagccg ctttggattt attcatagta taaagatgaa ttccatctac accacttgtg
      541 attaaatcga caatttgatc gcaagcatac gcgatacctg catcttctaa agccaaagta
      601 ttattttcat atttttctaa aattttaaca aatttaggag ggattttagc tctgcaaagt
      661 tgagaaattt ttaaaacctg tcttttgtta gtaataggca taatacctgc gtaaataggt
      721 atgtcaatat ctgctaaagc acaattttgt ttaaaagtat aaaaatcttc attatcgtaa
      781 aaaagttgag taatgagctt atctgttcct gcatttacct tagttttaag atggtgtata
      841 tcctcgatga aatttttaga ttcattatgt ttttcgggat agcatgcggc ataaatttca
      901 aagtattctt gtttttttat aaaagaaatt aaatcactag cataagaaaa atctttgctt
      961 ttttttaaat tttcacatat atcgcctctt agggcaagaa tttgattaag atttttttct
     1021 ttgcattttt gaagtatctg agtgattttt tctttactag aatggatgca aggtaaatgt
     1081 actatgctag gaatttgata ttcttcctgg attaagcttg caacttctaa agtattttgt
     1141 gagttaatag agcctccagc tccaaaggtt acgctgataa aattagggct taattgccct
     1201 aaatcatcta agatagcatg aagatttttg atattttcat cctttcttgg tggaaaaact
     1261 tcaaaagaaa aactacacat gaaaactcct tataattgtt ctcgtatttt ttgcgtagcc
     1321 gtaactaaat ttttaagaga ggctataact tcttcatagg ctcttgtttt aagtccgcag
     1381 tctggattga tccaaatttg ctccttaggt aatttgttta aaattttttc tatagttaaa
     1441 cttaattctt ctacgcttgg aactctaggg ctatgtatat cataaactcc tggtcccacc
     1501 tcagttttaa aacgaatagc ttttagggta tctaaaagac ttaagtttga tcttgaagct
     1561 tcaaaagaaa tcacatcagc atccatagcg tcaatttctt ttaagatatc actaaattca
     1621 ctataacaca tatgagtgtg aatttgagtt ttagctttta ccccgctatg cacaagatta
     1681 aaagcaggaa tagcccaatc taaatactca ctatgccaat cactttttct taaaggcagt
     1741 ttttcacgca aagccgcttc atcaatttgt atgattttta tacctgcatt ttcaagatct
     1801 aacacttcat ctcttatagc taaggcaatt tgctcagtgc tttcttttag actgatgtct
     1861 tctcttggaa aggaccaatt aagtatggtt acaggtccag ttagcatacc ttttacgatt
     1921 ttttgactta aactttgtgc aaatttagac caagctaagg tgataggctt tgtgcgtgat
     1981 acatcacccc aaatcacagg aggtttaacg caccttgtgc catagctttg cacccaacca
     2041 ttttgagtaa ataaaaagcc ctttagattc tctccaaaat actccaccat atcatttctt
     2101 tcaaattctc catgcactaa aacatcaagt cctatttctt cttgaatttg taagcattct
     2161 ttgatttttt gttggttaaa ttcagtgtag ttttgagctg aaattttttc ttgcttaaag
     2221 gcaaggcgat tagatcttac atcggcactt tgaggaaagg aacctatggt tgtggttggt
     2281 aaaagaggga gttttaaaaa ttctttttgg attaaggcgc gttctttaaa actaggcgtt
     2341 ctggtaaaat cttctttttt taaggcctta agccttgctt tgactttttc atctaaacgc
     2401 tctgggatat ttttaaaaag ctcttgattg gctctaaaga gcggattttc ttcgctagaa
     2461 tttagaattt cttttaaatc tttaagttct tgaagttttt ctttagcaaa ggcaaaaagt
     2521 ttaagatagc ttgaatctaa tttgctttca aattcagtgc tataaggcac atgtaaaagt
     2581 gagcaagaag tgtttaagat gatattttgt gtatattttt gaagctcttt aataagcttt
     2641 aggcttttag cataatcatt agcatagata tttttgccgt taataagacc tgcaaaaagg
     2701 attttatctt tagcaaaacc gtattgttgg actaaggcta agctttgttt tccctcgata
     2761 aaatcaagcc ccaaagcatc aaatttgctt tctaaaagtt taggataaat atctcttaag
     2821 tctccaaaat agctttgaag taaaatttta agatcttttt tgtgatttaa aagttcttgg
     2881 taaaattctt cgaacaaagc gatatcttcc ttgcttaaat cataaaccaa ataaggctca
     2941 tcaagttcaa gccatgttac tttaagttca tttagtttat caaaaagctc tatgtaagcg
     3001 tttaaaagct tttctttggc gagtttttga gttttttcat ctttaaaggc aatgagttta
     3061 aaaagtgtga aaatgcctat taaaacaggc ttgctttcta taccaagctc tttagcttcg
     3121 agatattctt taaaaatttt atcccctgtt aaagctacaa tatcagcatt atcgcactca
     3181 ggcaccaaat aatgataatt tgtattgaac cattttttca ttgctaaggc tgtaacatct
     3241 ccattttctc cttgataacc tcgactttga gcaaagtatt catctaaagc atctaaattt
     3301 aaatttttat actttgtatg aacaatgtta aaaagcacag ctgcatctaa gacattatca
     3361 taaagtgaaa aatcattact agggataaaa tcaatgccag ctttttgaat ttcttgccag
     3421 tgtctaatcc ttaaatcctt agcactcttt aaaagctcct ctttagaact ttggttttta
     3481 aagtattttt caatagcaaa ttttaattct ctatttgcac ctattcttgg gtaagaaatg
     3541 attgaatttt tcatatttgt tctccttaaa atgtagggat taaagcaccc tgatattttt
     3601 cttctataaa ttttttaact tcattgcttt gcaaggcctt tactagggct ttgattttag
     3661 gaaggttttc attaccttct ttaacggcga tgatattgcc atattcacta tatttacttt
     3721 ctgtataaag cccatctttt acagggttta aacctgctaa aatagcaaaa ttgctattaa
     3781 taagagaata atctacatca tctaaactcc ttgtaagttg agcgtctttt aactctacaa
     3841 atttaagctt cttaggattt ttagtgatat ctaaaggagt gatgagctca ttatccttaa
     3901 cttctataag tcctttgctt gctacaatgc gtaaagcacg gctttcattt gtaggattat
     3961 tgggtataga aatgctttgt ccttccttgg ggtgaaattc tttgtgtttt ttagaataca
     4021 ctgccatagg ttctatatgg atactggcaa cttttacaag atgggtgcct tgtctttgat
     4081 tgaattcttt taaataaggc tcatgctgaa aataattagc atctaactca ccattttcaa
     4141 ccattacatt agggattact ccatcattga attcataaat ttttaaatca taaccttgtt
     4201 tttgaagtgc tgattttata aatcttaaaa tatctgcatg aggtgttata gaagagccaa
     4261 ctttaagttc ttcatttgcc catgcaaaac cggtaaaaag agtagcgacg caaaaagctt
     4321 tagtaaataa agtcattttt tctcctttac gcaaaactaa atttttctat caagtcacta
     4381 tgataaatac ttgccacatc aggatgagag cgtatcattc ttttaaaata attacttgca
     4441 acatttctta aaagtggatt tttaggatca gtatccacac ctttactttc tttagcaagc
     4501 tctggattta acttaaaaat aggtatatcc ttatcaagct gcactccaag aaaataagct
     4561 acgctaaagc gttcttttgg gcttaaattc acgcggtgaa tagtagcttt taaatagcca
     4621 ttggtagcta gttctaaaaa ttctcctata ttaactacaa cgctattttc aagtgggggt
     4681 atactaagcc atttaccatc tataaaagct tcaaatccgc tttgtttttc ttgaaaaaca
     4741 aaagtgataa gcccaccatc tttatgtgaa cctacgcctt gagtgatatt ttttgagctt
     4801 tttggataat gtatgatttt acaatgttcg taagaatttt ctccataaag tttatcaaaa
     4861 gcattgttag gtagatcaag agcttgagcg aaggctttta aaagctttaa acaagctttt
     4921 ttggtttgtt tgtgccaagt taagaaagtt tttttaagtt ctggaatttc actaggccaa
     4981 agattaggac cttctagtct ttgccataag ggtgagttta aattccagtt taaagcatct
     5041 ctttctgtgc ctatatccag ttgttctcta taatccttag atcctgctgt gtattcaaaa
     5101 ccttcgctag tataacctct aaattgagga gaatgtacca tagaaataag ctctttcgaa
     5161 cttctagaaa gattaaaaaa ttctttgcca agtttgaata atttctcgtt taaattttta
     5221 tctatactgg tattgataag ataaaaaaaa cctattttag aagcaatttc tcttaaattt
     5281 ttaagaaaag tgcttttatc tttttcataa gcttgtaaat caagtatagg taagttcatt
     5341 tttgctcctt aaattaaaat taaggataag aagatatttt gaattaaaat tttattagag
     5401 aaatttttgt aagttaagat tttaaatgag tattttgaaa aaataaactt ttttgacttt
     5461 cttacacatt atatctcctt atccactttt tggacctttg gaaacataat gttaagccaa
     5521 aggacgcact agatactaca catctcgcac atcagtttca ttttttctcc ttttaaaata
     5581 ataaaatttc aaaatcatat ataaaaatat attaattaaa gcttaatcat ttaaaaaata
     5641 aagattcttt ttaagcattc tcgagtttta attctttgtt atttattatg ctaataccta
     5701 gatttaaaac tttttgggca atttgtttgg cttcatctaa agaatgcatt gcgcaagttc
     5761 cgcattggta gatattaagt tcaggaattt tgctttgatc gcttacgctt aaaacatctt
     5821 tcatggctgc ttcccaagct tttgcaatac ttttctcatc aggtgttcca attaaactca
     5881 tataaaaacc cgtgcgacaa cccataggtg aaatatcaat aatttcaact gaatttgaat
     5941 taagatgatc tctcataaat cctgcgaata aatgttctaa ggtatgagta cctttttcgc
     6001 tcataatgtc tttatttggt atgcaaaaac gcaaatcaaa tacgctaata tcatcaccct
     6061 taggtgtttt cataacttta gctaaacgca cagcaggagc tggcatttta gtatggtcaa
     6121 ctttaaagct gtctaataat ggcattttaa ctccttaaat ataaattgtc taagaattat
     6181 agcatttaaa gttaatattt aaagcctttc taaaagaaaa aaagataaaa taaaacattt
     6241 aaaaattcaa ggaaatttta tgtttgaagt agttataggt cttgaagttc atgctcagtt
     6301 aaatacaaaa acaaaaatct tttgctcatg tgcaacttct tttggagaag ctccaaatac
     6361 caatgtttgt cccacttgtt tggccttacc aggagctttg cctgttttaa atgaagaggc
     6421 tgtaaaaaaa gctatagctt ttggaaaagc tgtcaatgca acaattaata aaaaaagtgt
     6481 ttttaatcgt aagaattatt tttatccaga tttacctaag gcttatcaaa tttcacaatt
     6541 tgatatccct atagtagaaa agggtgagct ttttatcaat gtaaagggtg aaaataaacg
     6601 cataggtatt acaagagcgc acttggaaga agatgcaggt aaaaatatcc atgaaagtaa
     6661 tttttctaaa gtagatttaa atcgtgcagg aactcctttg cttgagattg tcagtgagcc
     6721 tgagcttaga agtagcgatg aggcagtagc ttatcttaaa aaacttcatt ctattatacg
     6781 ctttttagac atttcagatg caaatatgca agaaggaagt tttagatgcg atgcaaatgt
     6841 tagtataaga cctaagggcg atacaaaact ttatactaga gtagagatta aaaatcttaa
     6901 ttcttttcgt tttatccaaa aagctataga atatgaggta aaaagacaaa gtgaggcttg
     6961 ggaagatgga acttacgaac aagaagtagt tcaagaaact agactttttg atacgacaaa
     7021 tttagttaca agaagtatgc gtggcaaaga agaagcggca gaatatcgct attttcctga
     7081 tcctgattta ttgcctgttt tattaaaaga tgagtttttg gatattaaaa tccctgagct
     7141 tcctgatgag aagaaagtac gctttataga caagcttggt ataaaagaaa gtgatgcaga
     7201 ggttttaatc agttctttag aaatgagtcg tttttttgaa agtcttattt ctcaaaattt
     7261 aaatcctaaa ctttgcgtaa attggttaaa tactgaactt atgggacttt taaaaggaga
     7321 attgactata gaaaattctc ctgtagatgc tcaaaagctt ggagttttaa ttaaacgcat
     7381 agaagatggc actatcagtg caaaagcggc taaagatgtc ttagcttttg tatttgaaaa
     7441 tactagcgtg gaaattgatg aagctataga aaagctagga cttaagcaag taagtgatga
     7501 ttcagccata gaagcggtga ttgaacaaat tttaaatgca aatgccgata aggttgcaga
     7561 gtataaaagt ggtaaagaca agctttttgg attttttgtg ggtcaaacaa tgaaagaagg
     7621 caaaggagct tttaatcctg caaaagtaaa tgaaatttta aaaacaaagc ttggttgatg
     7681 cgtatagcgg ttattggtgc gggaaaatgg ggcagtgctt tacatctagc cttaaaagaa
     7741 aatcacaatt gttttatcag ttctttgcat cagcgtgatt tagaagattt tgttagcata
     7801 aaagaagctt tagaatgtga atatcttgtt tttgctttaa gttctcaagg gatgcgtgct
     7861 tggcttaaag aaaatttcat caacaaggga caaaaaattt taattgcttc aaaaggcata
     7921 gaagatcaaa gttgtcaatt tttagatgaa atttttttag attttgtacc aaaagaaaat
     7981 ttttgtgttt taagcggtcc ttcttttgct gctgaagtaa tgcaaaaact tcctactgct
     8041 ttgatgatta gcgggataaa tcaagagctt tgtaaaaaat ttgcaagttt tttccctgat
     8101 tttattaaaa cttatattga taatgatgtt cgtggtgctg aaatttgtgg tgcttataag
     8161 aatgttttag caattgcaag tgggattagt gatgggttaa aacttggcaa taatgcaaga
     8221 gcggcactga tttcaagagg gcttatagaa atgcatcgtt ttggtaaatt ttttggtgct
     8281 aaagaagaaa cttttttagg gttaagtggg gcaggggatt tgtttttaac tgcaacgagt
     8341 gttttatcaa gaaattatag agtaggttta aaactggcgc aaaatcaaaa attagatagt
     8401 attttagtcg aacttaatga agtagcagaa ggtgtaaaaa ctgcttatgc tatagaaaaa
     8461 ctagcaaaaa tgaaaggaat ttatacacct attgtaaatg aagtagtggc aatttttaag
     8521 ggtaaaagcg tgcaagaagc aacgcagagt ttattaaagc aaaatgatta aggaaaaatc
     8581 atgataatta aaaatgcaaa aatttatgga gattctttac aagatataga gattaaagaa
     8641 ggaaaaatta ccaatattgg ttctaattta caaggcgaag aaattttaga tgctaaaggt
     8701 atgactttac ttccatcttt tgtggatttg tgtgtgagtt taaaaaacga taaattttct
     8761 ttagctaatt tagagctttt agaaaatgag tgtctaaaag gaggaatttc tagtatagtt
     8821 ttgcgtgatt gcatggattt tgatgaagaa agttttgctt tatttttaca aaatttagct
     8881 caaagaaaga tgcaaatttt ttcaagtgtg cgggttaagg atgcaaacgg caagcttaaa
     8941 aatttagcca ctcttttaaa taaaggtgct tgtgctctag aacttgacag ctctttagat
     9001 gcaaatactt taaaagtaag ttcacaatat gcttttatga aagactctcc aatttttgtg
     9061 cgttgttatg ataaggattt tgatgataat ggagtgatga atgattgtga aatgagtttt
     9121 gagctagggc ttataggcat gagtaaaatc gctgaaacta gccagatagc taaaatgaaa
     9181 gaattggcta aattttataa aaataaagtt atttttgatc ttttaagttt gaaagattct
     9241 ttagtattat tagatgaaaa ggatttaaaa cttgtaagca ttcatcatct tatcaaagat
     9301 gatagtgctt gtgaagattt taatacggct gcgaaactta tgccaccttt aagaagcaaa
     9361 gaagatgttt tggctttaag agaggcttta aaagaaggaa agattagctt tttaacttcc
     9421 ctgcatagtg caaaatcaat ttctttaaaa gatttagctt ttgatgaagc ggcttttgga
     9481 attcatagcg tatgcgaatt tataagtctt tgttatactt ttttaatcaa agaaggattt
     9541 ttaaattggc aagagctttg tcgatttaca agtaaaaatc ctagtgaatt tttaggttta
     9601 aatagtggag ttatagaagt tggcaaagaa gctaatctag ttctttttga tgagaatgaa
     9661 gaaatttttg ctccaaaaag ttctctttat tctgaggata aactttttgg aaagattaaa
     9721 atgcatataa ttaaaggaaa aaatatttta gaaaaataag ctttacttaa attcctaaag
     9781 atagtttaaa tcctaaaaat acaagtgctg ccataatacc agcggctggt aaagtgataa
     9841 tccaagccaa tcctataggc ttcatcataa tccaatttgc gtttttatta tacactccta
     9901 tacccaatat agcacctatg agtatatggg tggagctaac aggaattcca aattgtgtag
     9961 ctaagagtat aactatgctt gcaccaagtt ctgcagaaaa tccagtagta gggcgtatgg
    10021 ttgcaagttt tgaacccact gtagtaatca cttctttacc taaaaaccaa agccctacaa
    10081 ctagagcaac tccaaacata gctaaagctg caaaaggtac aggagaagtc gcgttaattg
    10141 taccgttttt taagacatct aaaatcgctg caaaaggacc tatagcattg gctatatcat
    10201 tggctccgtg tgaaaatgca aaactagagg ctgtaaatat ttgaaaccat gagaaaattc
    10261 tatcagtagt tttattaagt tctgtttttt taacgatttt gactatagca aatgttacaa
    10321 cataacttat agttcctata attccgataa tccaaaagtt ttgtaaaata tccaaagtgc
    10381 taacattatt taaaccttta aataaaaaca ttgccgaaat gatagcagca gcaatacaag
    10441 caatgattgg catatgagtt tttaaaatag agtaaatatc tatatctttt tcttgatcct
    10501 taaattcctt cattttattt ctatagaaat tattttcttg ttcttcttca tccaaagcta
    10561 tagcggaaag ttctttgatt tgttcttctt gggattttgt ttttaaattt aaaaaatatt
    10621 cttctttgaa tttttttctt tcttttttga tatttttcaa atcatcattt agtttttctg
    10681 atggttttaa aattttctta tcaatatatg aataaataat ataagctaca atacccccta
    10741 aaagaggcga agctacccaa gaaatagcta ttcttaaaat ttcactccat ttaaccatag
    10801 agagtgtttg gattccatca aattttaaaa gccccatcat aatgctagca cctacaatcc
    10861 caccaactat actgtgtgtg gttgatacag gtaagccttt cttggttgca ataaaaatcc
    10921 aaaccccaga gcttaaaagt gcagcaagca taatgataac aaaaagcata ggatctaaag
    10981 aatttggaaa aataacaata ccgctgcgta tggtcttagt aacttctgcg cctgcgaaga
    11041 ttgccccgct tagctcaaaa acagctgcta taattaaagc ttgtttaatg gttactgttt
    11101 ttgcaccaac gcttgttcca aaagaattgg ctacatcatt tccacctata ttaaatgcca
    11161 taaaaatgcc aaatatagaa gcaagaataa aaagaatcaa ttgatgttgc gaaatataac
    11221 caaatcccca aataacaaat gcgatagtac tgataataaa aataacaaaa gctatgaggt
    11281 tgtctttttg cattaataac ccttttttat tttaattata cacttattta ctttaaattt
    11341 gctaatttta ttttttagtc tttgtggaat ttttatttat attatttttt tataataaat
    11401 actcaaacaa gaaataataa ggaatataag aataatgagg ggtatttttt atataatagc
    11461 attgttttct ttactcaatg ccgatgaact tacagaggct ttagtaaaaa ataataatca
    11521 aaattcttgg gagcactttg attataaaaa taccaaagaa gctccaaaaa ttcaagaaga
    11581 gaatgtggat tttaaaagca cttttgatag cttgctttca aaaactttag aaaataataa
    11641 tggtatagat aaaacagatg ggaatttgga ttttcaaaac gaaaacgcgc aggttaaaaa
    11701 tttaagttct ctttatgagg gggagaataa ttctttgctt tttcaaaaag aactttttgt
    11761 ggctcaaaat aattataatt actcaggggg tttaatcaat cgttatgaaa aagatgattt
    11821 tttatttgga gttaatggtt ttattgataa acaaaaggaa caaaaagata ctaaaagctt
    11881 tggtacagag tttggttata gtaaatttat aaaggcttat agtaattatt atatacccaa
    11941 tgaagcagaa aaaaatttac agcttggaat gagttttgta attccaactt ataccgcttt
    12001 tgcttttgat ataagtaagg ataatgataa aactaattat caagtatctt actctcctta
    12061 tagtgtattt agtttaaatt tattgcgtcg tgattatagt gcaagagaga ctgttgatga
    12121 tactgttgtt caagttggat ttagttttaa tttcaatgaa agttttttaa agcaatttag
    12181 aaaaaaagat aatactttag aggaggttaa tcgatatgat ttcctccaaa gaactcatta
    12241 gttcattcca gcattatgga atttttctgg attatccata gcatagcgga atttttccca
    12301 atcaatttgt ttatcccaga tggcaacgat taaggctgct actgaatttc cacaaagatt
    12361 tccaaccgcc ctcatttcag acataaattt gtcaacacct aaaagaatac ctatagcagt
    12421 tactggtaga acttgtgcta aggttgcatt tgcttctgaa atttccatat ttcctagagc
    12481 cgcaagcgta cttccaagca ctataaaacc tgatccagtt acacctactg caccttttga
    12541 ggctatcatt aatactatta aaatactgat ttcgtgtgct aaacttaaat ttacattgaa
    12601 agcttgtgct agaaagatta agctcatagc tagataaata tttgtacaat caagattaaa
    12661 actatatccc gttggtaaaa caagtccgac tgttgcttta gaaagtcctg ctttttctag
    12721 ttttctcatt aaaggagcaa gtgcagactc gcttgaactg gttgcaaaaa cgatcaatac
    12781 ttctcttgag ataaatctca taaatttgaa gatatttact tttgcaaaat aacaaatcag
    12841 acctaagatt ccaaatataa aaacaagaca tgaaatcagc attactaaaa gtaaatatgc
    12901 taagttgatc aaagagccaa ttccgtattg agctatgagt acagccattg ctgaaaaggc
    12961 ggcaatagga ctaaaataca taatgatttg tagaatttta aaaacaaaat tttgtaccac
    13021 ttcaaaaact ctttgaattg cctgtttgtc ttctattctc attaaagaaa taatcaaagc
    13081 agtaattata gcaataacta aaacttgtat ggtttttcct tctgtaaaag gtgtgataat
    13141 atcagtaggc atagcatctt ttaaaatatg cataatctca gagctcgcac ttacttctgt
    13201 ggtttgagaa atgtattttt gaacgctttt tgtatcaagt tgacttggat caagattcat
    13261 tccatggcct ggttgcataa catttgccat aaaaatacct atagcaagtg ctaaagtact
    13321 tacaacttca aagtaaataa ccgctttagc accaatgcta cctacttttt ttaaactttc
    13381 aagactaatg atgcccaaaa ccaaagtaac aaaaataata gggcctataa gaacctttaa
    13441 agcacctata aaataatcaa ctcctggttt gctagcaatg gctaattctt tatctgtata
    13501 gccaagtaca atacctgtaa taatgcctat aatcacccaa aatccaagac ttttgataat
    13561 acgtttatat aaaggcggtt ttctttcagc taaagtttga cttaaagttt ccaagtttat
    13621 tcactccttt tgatctttgt aaaatataat tttaacaatg tgtatcgtaa attttaacaa
    13681 a
//
LOCUS       DAPOLW010000037        13599 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.037, whole genome shotgun sequence.
ACCESSION   DAPOLW010000037 DAPOLW010000000
VERSION     DAPOLW010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13599
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.037"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..280
                     /locus_tag="ROE18_000760"
     CDS             <1..280
                     /locus_tag="ROE18_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650954.1"
                     /translation="FIKKKQNLSKIIHFKVLKDDLKPNIKEKIHFFTMFFTLFKLMAY
                     VILVAGFLFLHRQDKLDIFAYICGISSLLVCVFIFILYIKKYESKKNY"
     gene            258..1445
                     /locus_tag="ROE18_000761"
     CDS             258..1445
                     /locus_tag="ROE18_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDX3650955.1"
                     /translation="MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLA
                     VGVVSSCFFVGALVGTISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAVL
                     RFSIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
                     VFILSATLILLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMASLFILLQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFI
                     TMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSKNKGVELGRGVLFCY
                     SLGSLFGPLILGFLMQYFEIKGFIWFYIVSLAFLILFAINKPNILNKKFKKKPGNMVI
                     FDD"
     gene            1438..3597
                     /locus_tag="ROE18_000762"
     CDS             1438..3597
                     /locus_tag="ROE18_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HDX3650956.1"
                     /translation="MINTQLASQIANTQKNDLKVDNSASKDKTNLKDNPKEALAQALK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKILSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLSVQIAQLANTNLSPKDTLKELKNIINSSKNE
                     NKQILNQSSFKALLNLSSKLENFKNYISKNPSHAQEKITPIANKILKELNSIKNDFFK
                     ALNKPENLMIKDPNILKQTATAFEKLENTLKNILGNQASKIQDKENILENLLSNKENI
                     KEEKLNHNTKNQDEEKHIKASKEDENLDSGIKTHEEDTQDTKNDIQNNETENKPDNDI
                     KNSTPNQEKIKDEKQEKSKENIKENPKFYETKTENKTSINTNTNTSNPNTNNTQNLNN
                     TQNIQSNNNQTMQNIFKNQEFIKQNIVKNLAFNVENLDLEQVQDLSKNLSNLSRRLNE
                     SLKELEPYTQNAKLNQAELKNLEHKLNLSIKDLAQIKPKTEQDIAESLHHDVKSTLLQ
                     ISNLAKNEGNEAVYNQANRLLAQIEINQLMSLANDSINTYLPFSWDDLNDSKIMFRRG
                     KKDKFFAQIKLEFAKLGDLEILISLNNEKYIDINIMAENIEFRKTIYENAHELKRNIN
                     KAGLLSANFFVGDIIRSKFDTRNMKNLDLEMGMDKKV"
     gene            3594..3875
                     /locus_tag="ROE18_000763"
     CDS             3594..3875
                     /locus_tag="ROE18_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HDX3650957.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(3872..4672)
                     /locus_tag="ROE18_000764"
     CDS             complement(3872..4672)
                     /locus_tag="ROE18_000764"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDX3650958.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNINMSEFKA
                     PCEYESLNALFTRTLQIPRKFEEGFISPSDGKILECGSTFLANEEHFAFSIKGHAYSV
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRK
                     YENLNFKKGEELGNFELGSTIVLISQKGLLTFNLKVGQGIKFGEKIAD"
     gene            complement(4669..5793)
                     /locus_tag="ROE18_000765"
     CDS             complement(4669..5793)
                     /locus_tag="ROE18_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDX3650959.1"
                     /translation="MIFLIFSFIVLLIFGLANVYIYKRLIKKITLFKYFYKIFSFIFI
                     VLFLAQAVFLIFRRDEYLSDTWYEILAMFYAPTYCLFFMTLAWDFVKLILALMGKRDK
                     TYNLILRLIFELSLIVLSVFLIYASINNALKTPEVKSVDVEIPNLKQDLKIAMLTDIH
                     LGKNLHENFLDKLITKVNLQSPDMVVIVGDLIDTNPKDLKNYISKLNDFNSTYGTFYA
                     LGNHEYYHGINEVLDLLRKHTNMKILVNQNLDLGFINIAGLGDLAGLDRGLYAPDLAR
                     IKVDLNTSKASILLTHQPKTALLYDLSDFDLVLSGHTHGGQIFPFMFLVKLQQGFVYG
                     LYDLGEKTKLYVSSGVGFWGPSLRVFAPSEIVILNLKGKK"
     gene            5879..7174
                     /locus_tag="ROE18_000766"
     CDS             5879..7174
                     /locus_tag="ROE18_000766"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDX3650960.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFSISWQHYYIQSENLKFHRQMALKLVSEKKAFACFCTEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AMTYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLVILGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAQLAKFYT
                     QETSTIKELKEKMQAIFNAKDFGEFETECKILKELLKDIELFENYEDFKNELLNKSNL
                     KGKKFFMPLRIILTGNIHGPELSDLYPYIKNFIHELARI"
     gene            7177..7458
                     /locus_tag="ROE18_000767"
     CDS             7177..7458
                     /locus_tag="ROE18_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HDX3650961.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIITALLSWVNPDPYNPIVQ
                     ILYKLSYPAYALVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            7455..9080
                     /locus_tag="ROE18_000768"
     CDS             7455..9080
                     /locus_tag="ROE18_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HDX3650962.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYIANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLAQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGF
                     FKLYNYSKKYDLDLNTSLVNKLPNHIGFKDFAQNIIIKKENPKFRYSMLEINPENVSE
                     DSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEEDLKTLSQ
                     SSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLD
                     VLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESR
                     FIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFKPEIAYYFGNYHLNYLE
                     SRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVLA
                     NYIVYRHLLNDSIKISDIFENLIQNKANDLNKS"
     gene            complement(8977..9462)
                     /locus_tag="ROE18_000769"
     CDS             complement(8977..9462)
                     /locus_tag="ROE18_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650963.1"
                     /translation="MKIYSVILGAFLLGACSLKDQAIVDTNLKSQTLMFTQKYKITQD
                     KINAIITMSYLNPILDKTSKDDVLALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLK
                     YIIQNNYTDYFKVSLPSVKEEIRLVAKICLDHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
     gene            9558..10049
                     /gene="mobB"
                     /locus_tag="ROE18_000770"
     CDS             9558..10049
                     /gene="mobB"
                     /locus_tag="ROE18_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HDX3650964.1"
                     /translation="MKQLIIAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLSPDFDICLVEGLKT
                     LDLPRISVFCKEIDESYFIFSNAIASYEKISHPYLTWLDLNDIQAICQYILKNAKNLQ
                     GEL"
     gene            10051..10893
                     /locus_tag="ROE18_000771"
     CDS             10051..10893
                     /locus_tag="ROE18_000771"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HDX3650965.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DEIITKTLSQCSSIKAIISEEKDEILTLNERANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLRMNEKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKRGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNRSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            10886..11083
                     /locus_tag="ROE18_000772"
     CDS             10886..11083
                     /locus_tag="ROE18_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650966.1"
                     /translation="MNEVRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            11093..12979
                     /gene="metG"
                     /locus_tag="ROE18_000773"
     CDS             11093..12979
                     /gene="metG"
                     /locus_tag="ROE18_000773"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HDX3650967.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFIK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKQTRILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFVQNGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYVSSLDFQNKGENAKFWPAHVHLVGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDAYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNISKEGVLKFYNAELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWSLIKENKHEQANALVALCANILAKT
                     SLLLSPTLPKSSQKVALALNFEISSANYTKMILDNELLDFKANPCEALFPKVEKALLK
                     QEIKEEPKKEESPKIKIDDFAKIEIKVAKVLDCQNIEGSEKLLKFQLELDDKEIRQVL
                     SGIAKYYKASDLIGKQVCVISNLKKAKIFGHESDGMILSAKSGDKLVLIAPEQLVQNG
                     SLVG"
     gene            12983..>13599
                     /locus_tag="ROE18_000774"
     CDS             12983..>13599
                     /locus_tag="ROE18_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650968.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKTGFAFFNNDK
                     KEIAQAVKKGAYAIITENDITIEDKEIFYFRVENLERALVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFADFEKLIKAKKGEIFCYCEENYLNKLCTYSHSLKDANF
                     TLLSRSSFFFTTLICENLYFKNLNLPFFYANSFAKIISFLKEKSQ"
BASE COUNT         5190 a         2000 c         1917 g         4492 t
ORIGIN      
        1 ttttattaaa aaaaaacaaa atttatcaaa aattattcat tttaaagttc taaaagacga
       61 tttaaagcca aatattaaag agaaaatcca tttttttact atgtttttta ctctctttaa
      121 attgatggct tatgtgatat tggttgctgg atttttattt ttacatcgcc aagataaatt
      181 agatatcttt gcttatattt gtggaatttc atccttgcta gtttgtgtgt ttatttttat
      241 tttatatata aaaaagtatg agtccaaaaa aaattattaa atcaatgaca gcactttttg
      301 ctggtatggc atttttattt gcaggtaatg ccttgatagt aagctctata ggtgttatat
      361 taaaagaaaa cggagaaagt tctttagctg ttggagtagt aagttcttgt ttttttgtag
      421 gcgctcttgt tggaactatc agtgctcata aaattatttc tcgtataggt catatacgct
      481 cttttgggct atttggtgct atttttggaa tttcagctat gcttcataca gtaagcgaaa
      541 atcttatttt ttgggctgtt ttaagatttt ccataggaat ttgctactat gggcttttaa
      601 tggtcataga atcatggctt aatgaaaaaa gcaaaaatgc cattcgatct agaattttag
      661 gtttttatga aattgttttt tatcttgcgt ttggtattgg agttttaatc atagcgttaa
      721 atttaagcaa acatagtgta tttatcctca gtgcaacttt aattttactt tcatctttac
      781 ctttaaatct aattaaaatc aaagaacctg ttttacccgc atcaagtcct atttctatac
      841 ctaaaatttt tgatatagct cctttagcta tcgtcacaag ctttatagcc ggaatgctta
      901 taaatggctt tttttctatg gcatctttat ttatactttt gcaaggtttt gatacaaaag
      961 cggtttctta ttttatattt tgtggggttt taggtggttt tattgcacaa accatcatag
     1021 gaactatttc agacaaactt ggtcgcaaat ttgccattat cacttgtgca agtataggat
     1081 ttatcactat gcttatattt atctttttta aacttcattt atatatgcaa tattttttag
     1141 gaattactct tggtatagga atattttgct tatatgcttt agcacttgct agagcaaatg
     1201 atgttttagt aagcaaaaat aaaggtgtag agttaggtcg tggggttctt ttttgttatt
     1261 ctttgggctc tttgtttggc cctttaattt taggtttttt aatgcaatat tttgaaatca
     1321 aaggttttat atggttttat atagtttctt tagcattttt aattcttttt gctatcaata
     1381 aaccaaatat tttaaataaa aaatttaaga aaaagcctgg aaatatggtg atatttgatg
     1441 attaatactc aactagcaag tcaaattgcc aatacgcaaa aaaatgattt aaaagtagat
     1501 aactctgctt caaaagataa aacaaattta aaagacaatc caaaagaagc acttgcacaa
     1561 gctttaaagc aaaatttagg tttaagcaag gacgctagta gtgaggaaat actagcaaaa
     1621 tttgttcaaa atgaaacagg taccaaatta aaagaacttg ttaataaact tttagatcaa
     1681 atcaatgctc aaaaaaatcc cgattcccct gtgcttaaac aaggaaaaaa tttaaattta
     1741 gctcctaatt ttgctaatga attaaaaatc ttaagtacag aacttgcaaa aagtgatact
     1801 tttacacaag ttttagacag attaaatcaa attttaaaac ctgccagtga aataaaaaac
     1861 aataacttag ctcctttgtt taaaaattca ggcgtatttt tagaagctaa attaaaagat
     1921 gccctaaacg aagaattact acccaaaagt tttcactctc ttttaagtac aatcaaaggt
     1981 cttagtagcg aaaaactaag cgttcagata gcccagcttg caaatacaaa tttaagccca
     2041 aaagacactt taaaagaatt aaaaaatatt attaattcta gcaaaaatga aaataagcaa
     2101 attttaaatc aaagttcttt taaagcactt ttaaatttaa gttctaaatt ggaaaatttt
     2161 aaaaattata taagtaaaaa tcccagtcat gctcaagaaa aaatcacccc tatagctaat
     2221 aaaattttaa aagaattaaa ttccatcaaa aatgattttt tcaaagctct taataagcca
     2281 gaaaatttaa tgataaaaga tccaaacatc cttaagcaaa ctgctaccgc ctttgaaaaa
     2341 cttgaaaata ctttaaaaaa tatactaggc aatcaagctt ctaaaataca agataaagaa
     2401 aatattttag aaaatctttt aagtaacaaa gaaaatatca aggaagaaaa acttaatcat
     2461 aatacaaaaa accaagatga agaaaaacat ataaaagcat caaaagaaga tgaaaattta
     2521 gattctggta taaaaaccca tgaagaagat acccaagata caaaaaatga tattcaaaat
     2581 aatgaaacag aaaataagcc agacaatgat ataaaaaatt ctactccaaa ccaagaaaaa
     2641 attaaagatg aaaaacaaga aaaatcaaaa gaaaatatca aagaaaatcc aaaattttat
     2701 gaaacaaaaa cagaaaacaa aacttcaatc aatacaaata ccaacacttc aaatcctaac
     2761 acaaacaata cgcaaaattt aaataatact caaaatattc aatctaacaa taaccaaact
     2821 atgcaaaata tttttaaaaa tcaggaattt ataaaacaaa atattgtaaa aaatttagca
     2881 tttaatgtag aaaatttaga tctagaacaa gtgcaagatt taagtaaaaa tttaagcaat
     2941 ctttctcgta gacttaatga aagcttaaaa gaacttgaac cctatactca aaatgccaag
     3001 cttaatcaag cagaacttaa aaatctcgaa cacaaactca atctttctat caaagatcta
     3061 gcgcaaatta aaccaaaaac agaacaagat atagctgaat ctttacatca tgatgtaaaa
     3121 tcaacacttt tgcaaatttc aaatttagct aaaaatgaag gcaatgaagc tgtatacaat
     3181 caagctaatc gtcttttagc gcaaattgaa atcaatcagc ttatgtcttt agctaatgat
     3241 tctatcaata cttatctgcc tttttcttgg gatgatttaa atgattctaa aattatgttt
     3301 agacgcggaa aaaaggacaa attttttgct cagattaaac tcgaatttgc aaaacttggg
     3361 gatttggaaa ttcttatttc tttaaataat gaaaaatata tagatattaa tattatggca
     3421 gaaaatattg aatttagaaa aaccatctat gaaaatgccc atgagcttaa aagaaatatc
     3481 aataaagcag gacttttaag tgcaaatttc tttgtaggtg atatcataag aagtaaattt
     3541 gatactagaa atatgaaaaa tttagatctt gaaatgggta tggataaaaa agtatgagca
     3601 aaatcaaaag atcgattaaa aaagctgtag ctctaggcta tcaaaaagaa aaaaactctg
     3661 caccaaaagt gcttgcaagt ggcaaaggag aaagtgctgc taaaattatt tctttagcca
     3721 aggaacacgg agttcctatt aaagaagatg aagatttaat agaaatttta agcaagcttg
     3781 acttaggtga tgaaattcca cctaatatgt ataaagctgt agctgaagtt tttgccttta
     3841 tctatcaaat ggcaaataaa actcctaaaa actaatccgc tattttttct ccaaatttaa
     3901 taccctgccc tacttttaaa ttaaaagtta aaagtccttt ttgagagatt aaaactatag
     3961 tagaacctag ctcaaaattt cctagttctt cgcctttttt gaaatttaaa ttttcatatt
     4021 ttctagtaaa attatgagaa attttagcat tggtttgtat gcttgcatca aaattaaaac
     4081 gcatttttcc tacattttgc gctcctacaa aaacaagcca aaaaatacct ttttcatttt
     4141 gacatttcaa actcactctt tcatttttta catataaatt actaatgcgt tctaaatgtt
     4201 tttcatttac gctataaagc actccacttg tgtaagttgc acttaaaatt tgcatatcac
     4261 aagggctgtg ataacgatga taatcttttg gagaaagata aatattgaca taatcaagcc
     4321 catttttaag ttcatctttt tcaaagctat cttttaaaag ctcctcaacg ctataagcat
     4381 gtccttttat agaaaaagca aaatgttctt catttgctaa aaaagtactt ccacactcta
     4441 aaattttacc atcacttgga ctgataaaac cttcttcaaa ttttcttgga atttgtaaag
     4501 ttcttgtaaa aagagcattt aaactctcat attcacaagg agctttaaat tcactcatat
     4561 tgatattaaa atacttaaca taattttcat taataacttt ttgtatcatt ttaggaaatt
     4621 taatccccgc tacaaaacca aaaagtctcg aactttcttt tgaaaaactc atttttttcc
     4681 ttttaaattt aaaatcacta tttcactcgg agcaaaaact ctaagacttg gcccccaaaa
     4741 tcctactcca ctactcacat aaagcttagt tttttctcct aaatcataaa gcccataaac
     4801 aaaaccttgc tgaagtttaa ctaaaaacat aaaagggaaa atttgccctc catgtgtatg
     4861 cccacttaaa acaagatcaa aatcacttaa atcataaagc aaagctgttt taggttgatg
     4921 tgtgagtaaa atactagctt tgcttgtatt taaatccact tttattcttg ctaaatcagg
     4981 agcatataaa cccctatcaa gtccggctaa atctccaagt ccagcaatat ttataaaacc
     5041 caaatctaaa ttttgattga ctaaaatttt catattagta tgttttctaa gtaaatccaa
     5101 aacttcattg ataccatgat aatactcatg atttcccaaa gcataaaaag ttccgtaagt
     5161 ggagttaaaa tcattaagtt ttgagatgta attttttaaa tctttaggat tagtatcaat
     5221 cagatcccct actattacaa ccatatcagg actttgcaaa ttcactttag tgatgagctt
     5281 gtctaaaaaa ttttcatgca aatttttacc caaatgtata tcagtaagca tggcaatttt
     5341 taaatcttgt ttaagatttg gtatttcaac atcaacactc tttacttcag gtgtttttag
     5401 agcattattt atacttgcat aaattaaaaa cacacttaaa actataagag aaagttcaaa
     5461 aatcaaacgc aaaataagat tatatgtttt atctctttta cccataagag ctaaaatcaa
     5521 tttaacaaaa tcccaagcta aagtcataaa aaacaaacaa taagtcggcg cataaaacat
     5581 ggctaaaatt tcataccaag tatcacttaa atattcatct ctacgaaata ttaaaaacac
     5641 agcttgagct aaaaaaagca caataaaaat aaaggaaaaa attttataaa aatacttaaa
     5701 aagagtaatt ttcttgatta atcttttata aatataaaca tttgctaagc caaaaatcaa
     5761 taacacaatg aaagaaaaaa ttaaaaatat cataaaagta ttataaccaa gtaaaattaa
     5821 atatccgtat aaatttttct gttataataa gcttttaaat aattttaaag gctataagat
     5881 gtaccgtttt gcaccttctc ccacaggtga tatgcacata ggaaatttac gcgcagcaat
     5941 ttttaattat atctgtgcaa gacaaaaaaa tatggatttt atcttacgta ttgaagatac
     6001 tgataaggct agaaatatag caggaaaaga agaagaaatc aaagaaattt taaatctttt
     6061 tagtatttca tggcagcatt actatataca aagtgaaaat ttaaaattcc atcgccaaat
     6121 ggctttaaaa cttgtaagcg aaaaaaaagc ttttgcttgt ttttgcaccg aagaagaact
     6181 tgaagcaaaa aaagagctgg ctaaaaaaca aggtaaagct tatcgctacg atggcacttg
     6241 tgaaaaacta gccgatattg atgttttaga atgtgaaaaa ccctttgtta tccgtcttaa
     6301 aaaacctact catactatga aatttactga ttttatcaaa ggcgagctta gttttgagcc
     6361 tgaaaacata gactcttttg tgattatgag aacggataaa actccaactt ataattttgc
     6421 ttgtgcggtt gatgatatgc ttgaaaatgt cacttgtatt atacgcggag aagatcatgt
     6481 ttcaaacact ccaaaacaag aacatatccg cgcaagctta ggttataata aagccatgac
     6541 ttatgcacac ttgcctatca ttttaaacga agaaggtgtt aaaatgagta aaagagaagc
     6601 acattcttct gtaaaatggc tacttgaaag tggaatttta cctagcgcaa tcgcgaatta
     6661 tcttgtcata ctaggcaata aaactccttg tgaaattttt accttagaag aggctataaa
     6721 atggtttgat atttctaaag tttcaaaagc tcccgcaaga tttgatctta aaaaactctt
     6781 acaaatcaat cgtgaacata tcaaaatgat caaagatgat gagcttaata aaattttaga
     6841 tttaaacaaa gatcttgcac aacttgctaa attttatact caagaaacaa gtactataaa
     6901 agaacttaaa gaaaaaatgc aagctatttt taacgcaaaa gattttggcg agtttgaaac
     6961 agaatgtaaa attttaaaag aactcttaaa agatattgaa ctttttgaaa attatgaaga
     7021 ttttaaaaat gaacttttaa ataaaagcaa cttaaaaggt aaaaaatttt tcatgccttt
     7081 aaggataatt ttaacaggaa atatccacgg acctgagctt agtgatcttt atccttatat
     7141 taaaaatttt attcacgaat tagcaaggat ttaactatgg ttatagactc ttttattatt
     7201 tctatttttc aagtacttca aattgtcatt aacatttata cttggattat tatcatcaca
     7261 gcacttttaa gctgggtaaa ccctgatcct tataatccca tagtgcaaat tttatataaa
     7321 ctaagctacc ctgcttacgc cttagttaga aaaattccaa cacgcattgg taatattgat
     7381 cttgcgcctt tgattatagt cttagcattg cagtttcttg gcatttttct tgggaatatc
     7441 ttaaggagta tattgtgata aaaaaaatac tcgttttttt atttattttt tcaagtttaa
     7501 atgctacaca atatagtata gaaaaactca aaaaggaaga aaattcactt gctaaggatt
     7561 attatattta taggctttta gaaaaaaata aaatcagtaa aaaagatgca caggatttaa
     7621 attctcatat ttttcgctat ataggaaaaa ttaaatctga acttgaaaaa atcatccctt
     7681 taaagcctta tatcaaccca aaatatgcta aatgctatac ctatatagca aatactatct
     7741 tagatgcaaa tttaacttgt caaagtgtgc gcttaaattc attagttttt atagcgagtc
     7801 taaattccaa agaccgaact actttagctc aaacctttaa aaatcaaaga cctgatttga
     7861 caaatttatt gctagctttt aatacttctg atcctatgag ctatatagta caaaaagaag
     7921 atattaatgg tttttttaaa ctttataatt attctaaaaa atacgactta gatttaaata
     7981 caagtttagt caataaacta ccaaaccaca ttggttttaa agattttgca caaaatatta
     8041 ttattaaaaa agaaaatcca aaatttagat attctatgct agaaataaat cctgaaaatg
     8101 taagtgaaga ttctgctttc tatttaggag tcaatgcctt aacttatgat aaaacagagc
     8161 ttgcttatga cttttttaaa aaggcggcac aaagttttaa atcgcaaagt aataaagaca
     8221 atgctatatt ttggatgtgg ttgattaaaa acaatgaaga agatttaaaa actttatcgc
     8281 aaagttcttc tttaaatatt tatagtcttt acgcaaaaga acttaccaac acaccttttc
     8341 caaagataga aagccttaat ccaagcaaga aaaaaaataa ttttaatatg caagatcctt
     8401 ttgcttggca aaaaataaac aaacaaattc gcgatgctaa cgcaagtcaa ctagatgtct
     8461 tggcaaaaga atttgacaca caagaaacct tgcctattta tgcttacata ttagaacgca
     8521 aaaataattt taaaaaacat tattttataa tgccttatta tgataatata aaagactata
     8581 acaaaacaag acaagcttta attttggcta ttgccagaca agaaagtcgt tttattccaa
     8641 ctgctatttc agtttcttat gctttaggca tgatgcaatt tatgccattt ttagccaatc
     8701 acatagggga aaaagaatta aaaattccaa atttcgatca agattttatg tttaaacctg
     8761 aaatagcata ttactttgga aactatcatc taaattacct tgaatcacgt ttaaaatctc
     8821 cactttttgt cgcttatgct tataatggcg gtataggatt tactaaccgt atgcttgcaa
     8881 gaaatgatat gtttaagaca ggcaaatttg aacctttctt gtctatggag ctagttcctt
     8941 atcaagaaag ccgaatttac ggaaaaaaag ttctagctaa ttatattgtg tatcgacatc
     9001 ttctgaacga tagtataaag atttcggata tttttgaaaa tttaattcaa aacaaggcaa
     9061 atgatctaaa caaatcttag ctacaagcct aatctcttcc ttgacactag gaagagatac
     9121 tttaaaataa tcagtatagt tgttttgtat tatatatttt aaatactcat catccaattt
     9181 ttcaatattg gcttttttat tattgataaa aacttctaaa ttttgaattt ttaatgtatt
     9241 tggagtaaaa gataaagcta atacatcatc tttacttgtc ttgtctagaa ttgggtttaa
     9301 ataagacata gttataatgg cattaatctt atcttgtgtg attttgtatt tttgagtaaa
     9361 cattaaagtt tgagatttta aatttgtatc cacaatcgcc tgatctttta aagaacaagc
     9421 tccaagcaaa aaagcaccta aaattacact ataaattttc attctttttc catatttttt
     9481 agtattattg tagcctttta accctatttt ttggtttaaa aagatataat tttgcaaaaa
     9541 aattaagagt atattttatg aaacaactta ttatagcttt tagcgggcct tcaaattcag
     9601 gaaaaactac actcatcact aaaatagctg ataatttttt gcaacaaaat ttaaaagttt
     9661 taatcattaa acatgaccct gccgataaag ctcaatttga ttttaacggt aaagatagtt
     9721 ttaaattttt tcaaagtgga gctgaagtca tggttttaag ccctacaaga acaacttttt
     9781 tttctcatga aaatagagat attttaaaag ctttaaaatt aagccctgat tttgacattt
     9841 gtttggttga aggattaaaa actcttgatt taccacgcat tagcgtattt tgcaaagaaa
     9901 ttgatgaaag ttattttatt ttttcaaacg ccattgcaag ctatgaaaaa atttctcacc
     9961 cttatcttac ttggcttgat ttaaacgata tacaagctat ttgccaatac atacttaaaa
    10021 atgctaaaaa tttacaagga gaattataaa atgcaagaag tgatttctta tatacaaaaa
    10081 gcggttttag aaatttctaa cgctttaaaa tttcccgata caagctacag tcaaaatcaa
    10141 aattttacag gcgataccca actcaaattt gatgttttaa gtgatgaaat tatcacaaaa
    10201 accctaagtc aatgttcaag tattaaagcc atcatcagtg aagaaaaaga tgaaatttta
    10261 acgcttaacg agagggcaaa ttttatcgta gcttatgatc ctttagacgg ttctagctta
    10321 atggatgtta attttgccat aggttctatt tttgctatct atgaagaaaa agcaagtgct
    10381 aaaaatttaa gagctgcgct ttatagtatg tatggagcgc gattagaact tgtgatttgc
    10441 aaagatcagc caaaacttta tcgcttaaat gcaaataatg aatttatttt tataaaagat
    10501 cttagaatga atgaaaaagg caagattaat gctacaggcg gaacgcaaaa attttgggaa
    10561 gaaaaacacg ctaaatttat caaaagtctt tttgatgaag gctatcgctt aagatattct
    10621 ggagccatgg taagcgatat caatcaaatt ttattaaaaa ggggtggcat ttttagctat
    10681 cctgcaacac aagatgcgcc taatggcaaa cttcgtgcct tttttgaagt ctttcctcta
    10741 gcctttatca tagaaaaagc aggcggaaaa actacaaatg gaaaaaaccg ctctttactt
    10801 gaacttgaat ttgataaaat ccatgcgaca actccttgtt tttttggctc agaatatgaa
    10861 atttcaaaac ttttaaaggc ttacaatgaa tgaagttaga gatgaatttg agcaagatat
    10921 ggataaaaaa aaagaaattt tactttcatg tcaaaactca aaaaacctaa actcttgtta
    10981 taattgcgat gaaattttta actgccaaac tagaaaaaat tatgttgatg cagtctataa
    11041 cagtatgtct aagggtaaaa ccgaaggcgg atttgacttt taaaggaaaa aaatgcgtta
    11101 tattacaaca ccaatttatt atgtaaatga tgtacctcat ttaggtcatg cttatactac
    11161 catcatagct gatactttag caagatttta tcgtttgcaa ggacatgaaa caagatttct
    11221 aacaggaaca gatgagcatg gacaaaaaat cgaagaagct gccaaactaa gaaattccac
    11281 tcctcaagaa tacgctgata aaatcagttt tgaatttaaa aaattatggg atgaatttga
    11341 aatcacctat gatatttacg caagaacaac tgatacaagg catattgaat ttattaaagc
    11401 tatgttttta aaaatgtggc aaaaaggtga tatttataaa gatgaatacg aaggacacta
    11461 ttgtatttct tgtgaaagct tttttactca aagtcagctt attaacgatt gttcttgccc
    11521 agattgtggc aaacaaacta gaattttaaa agaagaaagc tattttttca aactttcaaa
    11581 atatcaagat aaaattttac aatggtatga agaaaaagat cccatcttgc caaaaaacaa
    11641 aaaaaacgaa cttataaatt ttgtccaaaa cggccttaaa gatctttcca ttacaagaac
    11701 aagttttgat tgggggatta aactgcctca agaaattaat gatgataaac atattattta
    11761 tgtatggctt gatgcacttt ttatctatgt aagctcactt gactttcaaa acaagggaga
    11821 aaatgctaaa ttttggcctg cgcatgtgca tttagtagga aaagatatct tgcgttttca
    11881 tgccatttat tggccagctt ttttaatgag cgtggatttg cctttgccaa aatttatagg
    11941 tgcacatggc tggtggacta aagaaggtga aaaaatgagc aaatctaaag gcaatgttgt
    12001 aaaacctaaa gaagtagttg atgcctatgg aagtgaagct tttagatatt tcttgcttag
    12061 agaagtgcct tttggtaacg atggggattt tagcgaaaat atgctgataa atcgtatcaa
    12121 tgcagagctt agcaatgaat ttggaaattt acttaatcgc attataggta tgagtacaaa
    12181 atattctcaa ggaaatattt caaaagaagg tgttttaaaa ttttacaatg ccgaactaaa
    12241 tcaagcaaaa gaacacttaa atttagcggt agaattttta gaaaacttac agtgtaatcg
    12301 ttatttagaa gaacttttta aagccttaag tgtggcaaat ttagccatta gtaaatacga
    12361 accttggagt ttaatcaaag aaaacaaaca cgaacaagct aatgctttag tagcactttg
    12421 tgcaaatatt ttagccaaaa caagcctttt attaagccct actctaccaa agtcctctca
    12481 aaaggtggcc ttagctttaa attttgaaat ttcgtctgca aattacacaa aaatgatact
    12541 tgataatgaa cttttagatt ttaaagcaaa tccttgcgaa gctttatttc caaaagtaga
    12601 aaaagctctt ttaaaacaag aaattaaaga agaacctaaa aaagaagaaa gtcctaaaat
    12661 aaaaatcgat gattttgcaa aaattgaaat caaagttgct aaggtacttg attgtcaaaa
    12721 tatagaaggg agtgaaaaac ttttaaaatt tcaactcgaa cttgacgata aagaaatccg
    12781 tcaagtactc tcaggcatag caaaatacta taaggccagt gatttaatcg gtaaacaagt
    12841 ttgcgttata agcaatctta aaaaagctaa aatttttgga catgaaagcg atggtatgat
    12901 actttctgca aaaagcggag ataaacttgt tttaatcgcc cctgaacaac ttgtgcaaaa
    12961 cggctcttta gtgggttaaa atatgcaaat tagcaattta ggcgaactgt taaacgcaac
    13021 actaattcat gaaggtagtg ttttaagcgt ggaaggtttt gccataaatt taaacgaact
    13081 taaaacaggc tttgccttct ttaataacga taaaaaagaa attgcccaag ctgtaaaaaa
    13141 aggcgcttat gctataatta cagaaaatga cattactatt gaagataaag aaatttttta
    13201 ctttagagta gaaaatctag aacgagctct tgtaagattt ttacgctttt tttgcgaaga
    13261 taaagaatgt gaatttttac tttttaaatc ttacgaacta agtctttgca aggcttttta
    13321 ttttaacatt ttaaaaggaa atatttttgc tgattttgaa aaactaatca aagcaaaaaa
    13381 gggtgaaatt ttttgctact gtgaagaaaa ttacttaaat aaactttgca cctattctca
    13441 tagtctaaaa gatgctaatt ttaccttatt atcgcgatct agcttctttt ttacaacttt
    13501 gatttgtgaa aatttatatt ttaaaaatct taatttgcct tttttttacg caaatagttt
    13561 tgcaaaaatt atttcttttt taaaagaaaa aagtcaaaa
//
LOCUS       DAPOLW010000038        13528 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.038, whole genome shotgun sequence.
ACCESSION   DAPOLW010000038 DAPOLW010000000
VERSION     DAPOLW010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13528
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.038"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..1035
                     /locus_tag="ROE18_000775"
     CDS             <1..1035
                     /locus_tag="ROE18_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HDX3650969.1"
                     /translation="SKCNYCAFTSLKKNDYEKAYFKALKEDIVFQLKQFNIQSNQIKT
                     LFIGGGTPSCVNAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWLKNMKNLGVNRI
                     SFGVQSFHPKKLHFLGRIHNQEMIIKTLENANKVGFKNINLDLIYDTKLDNKKMLEFE
                     LLHLKQIKDLITHLSAYNLTIESNTAFAKKEHFKKNAPNLMKFFIKQLLELDFFQYEI
                     SNFSKTKAQICKHNLAYWQGKNYLACGLSAVGFYENKRFYTAKNLKNYIENPTFRSIE
                     QLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKDKINILLKEKKLFYKNKRYFNPNFLI
                     SDELALYLSS"
     gene            1093..1509
                     /gene="tatB"
                     /locus_tag="ROE18_000776"
     CDS             1093..1509
                     /gene="tatB"
                     /locus_tag="ROE18_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HDX3650970.1"
                     /translation="MSFGEIIVILVVAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDKVKNNLSGQNLNTEEKPNLSKLETQDKNGKINV"
     gene            1502..2239
                     /gene="tatC"
                     /locus_tag="ROE18_000777"
     CDS             1502..2239
                     /gene="tatC"
                     /locus_tag="ROE18_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HDX3650971.1"
                     /translation="MFEELRPHLIELRKRLFISVACIVVMFIVCFALRSYILDILKAP
                     LIAVLPEVAKHVNVIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFAFGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKIGLIDDSFLKRHFRIAVLVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPAPKDKESDE"
     gene            2232..3260
                     /gene="queA"
                     /locus_tag="ROE18_000778"
     CDS             2232..3260
                     /gene="queA"
                     /locus_tag="ROE18_000778"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HDX3650972.1"
                     /translation="MNKDLLLSSYDYTLANELIANYPTNPKEDARLLVFDRKNKEIFH
                     TTFKNLQDFLPNCAIFFNDTKVIKARIYGNKASGGKIELFLHQPFLNSHNPLFLAQIK
                     GRIKKDEILYFKEDLKVRVVELLNDGLRKVQFFQNDKTLDTSNLYNLLDKIGHIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG
                     TFKSVECENIQEHKMHSEFFNIPQQACEIIDSKQAILGVGTTVTRTIEYYTRTKTKNG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYELAIKEKYRFYS
                     YGDAMLIL"
     gene            complement(3249..4214)
                     /gene="lpxD"
                     /locus_tag="ROE18_000779"
     CDS             complement(3249..4214)
                     /gene="lpxD"
                     /locus_tag="ROE18_000779"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HDX3650973.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCDGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAINFKEKSQD"
     gene            complement(4211..4675)
                     /gene="ilvN"
                     /locus_tag="ROE18_000780"
     CDS             complement(4211..4675)
                     /gene="ilvN"
                     /locus_tag="ROE18_000780"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HDX3650974.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            complement(4672..6372)
                     /locus_tag="ROE18_000781"
     CDS             complement(4672..6372)
                     /locus_tag="ROE18_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HDX3650975.1"
                     /translation="MKELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHAADAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYSKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELIKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENFNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKAINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISNKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            complement(6390..6833)
                     /locus_tag="ROE18_000782"
     CDS             complement(6390..6833)
                     /locus_tag="ROE18_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HDX3650976.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDAIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLVMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            complement(6845..7864)
                     /locus_tag="ROE18_000783"
     CDS             complement(6845..7864)
                     /locus_tag="ROE18_000783"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HDX3650977.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEARGVVCVALDETLAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTTQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
     gene            7957..8031
                     /locus_tag="ROE18_000784"
     tRNA            7957..8031
                     /locus_tag="ROE18_000784"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7989..7991,aa:Gln,seq:ttg)
     gene            8065..8140
                     /locus_tag="ROE18_000785"
     tRNA            8065..8140
                     /locus_tag="ROE18_000785"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8098..8100,aa:Met,seq:cat)
     gene            complement(8162..9034)
                     /locus_tag="ROE18_000786"
     CDS             complement(8162..9034)
                     /locus_tag="ROE18_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HDX3650978.1"
                     /translation="MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDL
                     NERLTFMPIKKENGRYVLESFALGKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSH
                     RVNKVLMVKNEGFQKVDYELFKDLSVAILKHNVLNFFYKEKERQIKPYKLVNYKGIWY
                     LLGDENDKLKHFNLDKISKLRTKNENFIPNEKLEEQIQNDPNIWLGESKEVILKLDKN
                     AKEYFFRKEILSNYQIIDKDETSYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKIR
                     LEDILKSYLNNLSK"
     gene            complement(9031..10098)
                     /locus_tag="ROE18_000787"
     CDS             complement(9031..10098)
                     /locus_tag="ROE18_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDX3650979.1"
                     /translation="MNHLLILYNPYYQEDVIKQHLSILQEKSQVAFGKIKSKLNDQEK
                     QNSLEEIYQSTNEENFLQLFLSDYANLFVAKVVKISKNVDESLIPSYYKEKNLEVEDF
                     FIISDLRELVREDFSRLRDKFLANFITPNDHTYAIYGNHYTYPLPVRLKEECSYFLGD
                     EKHYLSVYKSKEYLAMQENFIRFVFGKRIFYLLHSDSISNIIHAELELLQSENDLLND
                     FTSIIVKYSKTLEYEIYAFAKKVLLKACMKDPSLYDLAYNVQGKSFILKDFFTQKPNL
                     GSIKFLLRHENIQCHLGKSLTQFINYPFSKSLTIIQEIRNEAVHAKAPSLNEVKKLRN
                     EILGIEGVSLLKRILTHKEIS"
     gene            complement(10107..10976)
                     /locus_tag="ROE18_000788"
     CDS             complement(10107..10976)
                     /locus_tag="ROE18_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650980.1"
                     /translation="MENKFKINYDQTTTNGRNGTNGKVDNLSMKNHHLKSIGHSPDIF
                     GLFVSIVNQFTNTSTFVSNGKIITIDTNTFELQGGNFIAKIFCGFFNWFGHLASDWCG
                     SSGGKERGAGIPMPFYNLFLLCDFGNFGQHRQTLAQIATQVFEQGYDLRHGVTMSIPV
                     MINKMLIRFMYIIKAKFYHKKEWKECIPKDDIPELNKMLLIGSGTFLLIDTGGAWIKS
                     KNPITNPVVFLSEINLINVIRFSTLILKEIYILYNNGKIDNKKLEKYLDDTCKILLIE
                     AHNKSKPFKEILK"
     gene            complement(10982..11263)
                     /locus_tag="ROE18_000789"
     CDS             complement(10982..11263)
                     /locus_tag="ROE18_000789"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650981.1"
                     /translation="MITYSNLSDVKKRIEDEFTHRNAECDKYDYLIAITCGAIAGIMD
                     IFLVGNPKDSYLGKKVDKTVEKMTQKFAQLCGWDKQKALDKNKDLTKSV"
     gene            complement(11589..12053)
                     /locus_tag="ROE18_000790"
     CDS             complement(11589..12053)
                     /locus_tag="ROE18_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650982.1"
                     /translation="MSVSIMELLGFGELIKLPLIDSSKKYHNKNKQQLRLFIIQEILK
                     ENQKTITQIIDIINNLIEQCNTNTQNLQELIKLLKLASKNNETFKEREKLLYCPETLS
                     LITINNHLKEDDIQFIEQYYTYNQNTHEYERNDNLSSSDLEKLSNFFKLKNL"
     gene            complement(12558..13054)
                     /locus_tag="ROE18_000791"
                     /pseudo
     CDS             complement(12558..13054)
                     /locus_tag="ROE18_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108589.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(13073..>13528)
                     /locus_tag="ROE18_000792"
     CDS             complement(13073..>13528)
                     /locus_tag="ROE18_000792"
                     /inference="COORDINATES: protein motif:HMM:NF015914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3650983.1"
                     /translation="AKKFDVKFDENESTNSIETSLLCKLIEEELKNSQDENTLRELVN
                     IFELGISNINKQTVVMGLQSLIKIGGFKSYQIAVIVANQVMKVLLGRGLSLAANATLT
                     RALSLFSGPVGWTIMTTWTALDLASPAYRVTIPAVLQIIILRLKHNTKN"
BASE COUNT         4418 a         2230 c         1807 g         5073 t
ORIGIN      
        1 agcaaatgta attattgcgc ttttacaagt ttgaaaaaaa atgattatga aaaagcctat
       61 tttaaggctt taaaagaaga tattgttttt caattaaaac aatttaacat tcaatcaaat
      121 caaattaaaa ccttattcat aggcggagga acaccaagtt gtgttaatgc gtataattat
      181 gaagatattt ttaaaatttt atatccctta ctagataaaa atgtagaaat ttcatgcgaa
      241 gctaatccca actcagcaac attaaattgg cttaaaaata tgaaaaatct aggagttaat
      301 cgcatttctt ttggagttca aagttttcat cctaaaaaac ttcactttct tggaagaatt
      361 cacaatcaag aaatgattat caaaacatta gaaaacgcaa ataaagtagg ttttaaaaat
      421 atcaatttag atcttattta tgatacgaaa ttagacaata aaaaaatgct tgaatttgaa
      481 ctcttacact taaaacaaat caaggattta atcacacacc ttagtgctta taatttaacc
      541 atagaatcaa acacagcctt tgctaaaaaa gaacatttca aaaaaaatgc tcctaattta
      601 atgaaatttt tcatcaaaca acttctagag cttgactttt ttcaatatga aatcagtaat
      661 ttttcaaaaa ccaaagccca aatttgcaaa cataatcttg cttattggca aggaaaaaac
      721 tacctagctt gtggattaag tgcagtagga ttttatgaaa ataagcgttt ttatacagca
      781 aaaaatttaa aaaattacat agaaaatcct acttttagat ctatagagca actaagttcc
      841 aaagacttga atttagagca cctattttta ggacttagaa gtatagtagg gattgatgaa
      901 acaaaactca atcaatggca aaaagacaaa ataaatatat tattaaaaga aaaaaaactt
      961 ttttacaaaa ataaaagata ttttaatcct aattttctca ttagcgatga acttgcttta
     1021 tatctctcat cttaaattta agttttttaa gtaaaatatt tattaaaata tcaaatcaaa
     1081 gagtaatgat taatgagttt tggtgaaatt atagttattt tagttgtagc gattttagtc
     1141 ttaggacctg ataaacttcc agaagctata gtacaaatag caaaaattct aaaggctgta
     1201 aaacgcaaca tagatgatgc aaaatcaagc atagaaaaag aaatacgcat caatgactta
     1261 aaagaagaag ctaagaaata caaagatgaa ttttcaagca ctaatgaaaa tatacgcaaa
     1321 aaactcagct ttgaagaatt tgatgacctt aagagagata ttttagataa aacaaaggta
     1381 gatttaacct ttgatagcag agatgataaa gtaaaaaata accttagcgg acaaaattta
     1441 aatacagaag aaaaaccaaa tcttagcaaa ttagaaacac aagataaaaa cggaaaaata
     1501 aatgtttgaa gaattaagac ctcatttaat agaacttaga aaacgccttt ttataagcgt
     1561 tgcttgcatt gtagttatgt ttattgtatg ttttgctcta cgaagctata tcttagatat
     1621 tctaaaagct ccacttatag ctgttttacc cgaagtagcc aaacatgtga atgtaattga
     1681 agtacaagaa gccttattta ccgcaatgaa ggttagtttt tttgcagcct ttatcttttc
     1741 tctacctgta attttttggc aattttggaa atttgtagct ccaggacttt atgataatga
     1801 aaaacgcctt gtagtgcctt ttgttagctt tgcaagcatt atgtttgcct ttggggcttg
     1861 tttttgctat tttgttgtag tgcctttggc ttttaaattt ttgattaatt ttggtttaaa
     1921 tgaagatttt aatcctgtga ttaccatagg aacttatgta gattttttta ccaaagttgt
     1981 tgtggctttt ggcttagctt ttgaaatgcc tgtaattgcc tttttctttg ctaaaatcgg
     2041 acttatagat gatagttttt taaaacgcca ttttcgcata gctgttttag ttatttttgt
     2101 tttttcagcc tttatgactc cacctgatgt tttatctcaa tttttaatgg caggaccact
     2161 ttgcggactt tatggacttt ctattttaat tgttcaaaag gtaaatcctg ctccaaaaga
     2221 taaagaaagt gatgaataaa gacttacttc tttcaagcta tgattacact ctagctaatg
     2281 aactcatagc caactatcct acaaatccaa aagaagatgc taggcttttg gtttttgatc
     2341 gcaaaaacaa agaaattttt catactactt ttaaaaattt acaagacttt ttacccaact
     2401 gcgcgatttt tttcaatgat accaaagtta ttaaagcaag aatttatggc aataaagcaa
     2461 gcggaggaaa aatagagctt ttcttgcatc aacctttttt aaattctcac aatccgcttt
     2521 ttctagctca aattaaaggg cgcattaaaa aagatgaaat cttatatttt aaagaggatt
     2581 taaaagtacg cgttgtagaa cttttaaatg atggtcttcg aaaagttcaa ttttttcaaa
     2641 atgataaaac cttagacacc tcaaatcttt acaacctgct tgacaagata ggacatatac
     2701 ccttgcctcc ttatattaaa agggaggatg aaaaaagtga tttgaaagat tatcaaagta
     2761 tctttgcaaa aaatttaggc gcagtggctg ctccgactgc aagtttacat tttagtgaga
     2821 ctatgcttga aaatttaaga aaaaaacacg aaatttatca tttaaccttg catgtaggag
     2881 ctggaacctt taaaagcgtg gaatgtgaaa atatacaaga gcataaaatg catagcgaat
     2941 tttttaatat tccgcagcaa gcatgtgaaa ttatagattc taaacaagct attttaggcg
     3001 taggaacaac ggtaacaaga accatagaat attatacaag aactaaaaca aaaaatggtt
     3061 tttgtgatct ttttttacac ccgcaaaatc cacctataag acaaaatcat cttttaacca
     3121 attttcattt accaaaatct actcttatca tgctagtttc agcttttatc ggtagagaac
     3181 agtgtttaaa actttatgaa ctcgccataa aagaaaaata tcgcttttac tcttatggcg
     3241 atgcgatgct aatcttgtga tttttcttta aaatttattg ctattttagc ttgaagtttt
     3301 agccaatctt tttgaagcat gataggaaaa cctccataaa cacgcccgcc ttctaaattt
     3361 ttactcacac cgcctcttgc agctatagtg ctaaaatcgc ctatttttaa atgtccactc
     3421 gttgcacttt gaccacccat aataacattg cgtcctaact cacttgaacc tgaaattcca
     3481 gtttgtgcca caatgataca attttgacct atattgcaat tatgtccgat ttgaactaga
     3541 ttatctacct tagtacctgc tttgataata gtactatcaa aaactgctct atctatagtt
     3601 gtacaagccc ccacttctac aaaatcttct aaaaccacgt tgccattatg ataaatttta
     3661 taatgttcgc cgtttttatt gtgcgcataa ccaaaaccgt cacttcctat tacacaatta
     3721 gcaagcagat gacatttttt accgatttta gtatcattat aaatcactac attaggatga
     3781 ataatactct catcaccaat gctgacatta tcgcctatat aagctcctgc cataatgatt
     3841 acattttcac cgatatttac attatcacct atataaacat taggcatgat tcttgcgctt
     3901 tttgcgatat tttgtacttt ttctttagct gtgcttatca aaggtttagc aaaaagcttg
     3961 cttaaaaaag caaaactcaa atgtggactt tgagtaatca aagctttagt atctttaggt
     4021 actaaatttt catattcttt agatactaaa atagcagcag ctcctgtgtg aggtatatct
     4081 ttggtatttt tctcaccatc acaataagta agctctgtaa aatttgcttt caataaagaa
     4141 tttaaagcac tgatttctat atcctcgcct ttatattcca agcttaaaaa ttctgctatt
     4201 tcacttaatt tcatttaatc tccatcaaaa cagatccact gcgaactata tcactaggat
     4261 tgtatttttt aattgttttt aaaaaattat caatgcgatt tgcatcatca gcaaccatta
     4321 aaaacaaaaa attctcattg ctatttgcaa tagtaccatt ataagctttc aaaacggcat
     4381 caagtccgcc taaattttca tttaaaggaa ttttcactaa agccatttct ttgtcaataa
     4441 attcttcact ttctatcact ttataagtag gaatgagctt atgaagttgt ttgactatct
     4501 gctcaaaagt tctttcattt cctgaagtga ctatattaat acgagaaaat tctttatttt
     4561 ccaaaggtgc tactgtaagc gagtcaatat tataacctct tcctgaaaaa agtcctacta
     4621 tacgagataa aaccccatgc tcatttaaaa caattaccga taaaaccctt ctcattgtct
     4681 atcctttgcc tttggtaaaa tcatattata aatcgcacct cctgcaggca ccataggtaa
     4741 aacatcttca aagcgatcaa tttttacatt taaaagagag gttttatcac tttttaaagc
     4801 ttggctaaaa gcttgaatga attcttcttt gtttgaaatt tcataacctt cacaaccaaa
     4861 accttgagct attttgataa aatcaggctg agtgcttaaa tcagtttgtg aaaaatgctc
     4921 tttataaaac atactttgcc attgtcttac catacctaaa aaggcattat ttaaaataat
     4981 atttatagct tttataccat actcataagc agtcataagc tcttggatat tcattaaaac
     5041 cgatccatca cctacgaaat taatcaccac ttcttcaccc acagcaagct ttgcacccaa
     5101 agcagcaggt aaagaatatc ccatagttcc ttgccctcca cttgttgcaa gttgtcttgg
     5161 ataattaaaa ggataaaact gcgctaccca catttgatgc tgacccacat cggtaataat
     5221 ccttgcatct ggagccattt tcgcacattc ttcaatcacc cattgcggtt ttaaaatctc
     5281 attgctatct tcataagaaa gcggataaag ttcattataa cgctttaaag tttcatgcca
     5341 ttctttaaaa gttgtgttga aattttcctt tttaagctct tctaaaagct ctttaagaac
     5401 ttctttaatg tctcctacta taggataatg cgcattgata atctttgaaa tagaactagg
     5461 atcaatatca acatgaacta tagtcgcatg tttagcaaat tcacttgttt ttcctgtaat
     5521 cctatcatca aatctcgctc ctacactcac aagcaaatca cactcactta aagccatatt
     5581 agcagcatag cttccatgca tgcctgccat tttaagatta aaaacatcat cacttcttaa
     5641 agttccaagc gccatcaaag tttcaactgc tggaattttt gtaaatttta taagctctct
     5701 gatttgctcg cttgcattag aactgatgca acctccacct aagtaaaaca aaggtctttt
     5761 tgcttctttt aaaagctctg caaatttttt aatttgcttt gagttaccct tataaacggg
     5821 cttataagtc ttcatggaaa tttctttaga gtattcccaa agtcccaaag ttgcacttac
     5881 gtcttttggc acatctatat gcacaggccc aggtctacca cttcttgcta tataaaaagc
     5941 ctcttttaaa atgcgtggaa actcttctat acaagtaact aaataattat gctttacaca
     6001 aggtcttgaa atgcctactg catcaatttc ttgaaaagca tctgtaccaa taagagaatt
     6061 tgccacctgc cctgaaatca acaccaaagg gatagaatcg ctataagccg tagctagacc
     6121 tgtaatagta tttgtaaaac ctggtccgct tgtaactata gctacgccca cttctccgct
     6181 cattcttgcg taagcatcag cagcatgcaa agccgcttgt tcatgacgca ctaaaatatg
     6241 tttaaaatac ttttgattgt aaatttcatc ataaatatta agcgcagcgc ctccaggata
     6301 accaaaaaca attttaacat tttcttcttt taaagcctcg caaatcattg ccgaaccgct
     6361 taactctttc ataataacac tccaaaaaat tattgtaaaa gctctttaag tgctaaatta
     6421 agtcttttgc catcaacact cgcacctaat tttattttag cttctttcat taccaaacct
     6481 tgttctttta gtgaacttac gcccaattct tctataagtt gttttaaggc taaagttaac
     6541 tcctcatcac ttagttgttt aggcagataa atttcaaaaa gacttatttc attttgttct
     6601 ttttgtgcta aatcttcacg atttgcctta agataaagtt cgattgcgtc tttgcgtttt
     6661 ttgatttcac ttgcaatgat tttataaatt ctttcattat ccaactctat tctttcatcc
     6721 acttctattt gcttaaaagc tgcatttaga gttcttaaac tatctctttt aaaatcatct
     6781 ttttgtttca ttgcctcttt gatatcgttt aaaatttgtt cttttaaagt catttttttc
     6841 ctttttagtt aaaattacaa gctttaagat ttaaaccaaa accttctaaa cctatatagt
     6901 ctttatcaca actttgagat aaaagtttaa tttcttctat accaaaatat cttaaaatct
     6961 gtgctcctat accatagttt ttgtattgag tagtactgga tttttctcct tgcatgaaaa
     7021 ctataacgcc accattttca ctaagaaatt tgatttgctc taaaagtttt gaaaatttat
     7081 ctgaagttaa aagctcaaaa tcactaccac tgatatgaaa tttaacattt tcacattttt
     7141 tgatatcttt aaagcaaaaa gctatgtgtt gggtttgatt atgatcacta aagataaatt
     7201 tttctgcttt aaagcctgct aaaacacttt gacttttttc ttcaagctta ataaggcttt
     7261 catgttttag gcgatattct ataagatcgc ttacggctat catatttaaa tcatgttttt
     7321 ggcaaaaaat ttctagatct tctcttcttg ccatatctcc attatctttt acaatttcac
     7381 aaatcacaca agcacctttt aatcctgcta atttacaaag atcaaccgtg ccttctgtat
     7441 gacctgtgcg ttctaaaacc ccaccttttt ttgcgattaa aggattgata tgtcctggtc
     7501 ttacaaaatc actcgcttta gcattatcat cggcaaaaat ttgtatagtc atatttcttt
     7561 cataggcgct aactcccgtt gtagcatctt ttgcatctac ggttatagta aaagcagttt
     7621 cgtggtttga agtattttta ggcaccatta aaggaagttc aaattttttt gccaaagttt
     7681 catctaaggc tacacaaacc acaccacgag cttcttttat catgaaattt actttttctt
     7741 gagtgctaaa ttgcgcagga aagattaaat cgccttcatt ttctctatct tctgcatcta
     7801 ccataacaag catttttcct gcttgcaaat ccttaatcgc ttgttctacg ctaacaaatt
     7861 tcatttttat ttccttaaaa tttttaaaat tataacttaa attgcttgac aaataaatta
     7921 aaattcatta taatcacact tttaaaaaat atttattggg gtatcgccaa gcggtaaggc
     7981 aacaggtttt ggtcctgtca ttcaggggtt cgaatccctt taccccatcc acttcttatt
     8041 ttatatttca aagatcttat atgccgcgaa gtagagcagt ggttagctcg tcgggctcat
     8101 aacccgaagg tcgggagttc aaatctcccc ttcgcaacca gttaaggatt taaaataaat
     8161 tttatttaga tagattgttt aaataacttt ttaaaatatc ttctagccgt attttcagtt
     8221 ctataggagc tagaattttt atataaggaa tccactgttt aaccaaatgt aaaatttcat
     8281 cttcatagga aacttgagtg cttaaagtat agcttgtttc atctttatca atgatttgat
     8341 aattgcttag tatttctttt ctaaaaaaat attccttagc atttttatca agttttaaaa
     8401 tcacttcttt gctttctcca agccagatat taggatcatt ttggatttgt tcctcaagtt
     8461 tttcattggg aataaaattt tcatttttag tgcgaagttt tgaaatttta tctaaattaa
     8521 aatgttttaa tttatcgttt tcatccccta aaagatacca aattcccttg taatttacga
     8581 gtttgtaagg tttgatttgg cgttcttttt ccttatagaa aaaatttaat acattgtgtt
     8641 tgagtatagc cacactaaga tctttaaaaa gctcataatc caccttttga aaaccttcat
     8701 tttttaccat caaaacttta tttaccctat ggcttaaaag atcaactata aagccttgat
     8761 cgagttttgg ataaagctca gcaatgccac ttaaggtggc gaaattctgt atatctttaa
     8821 agcttaattt tcccaaagca aagctttcta aaacatatct tccattttct tttttaatag
     8881 gcataaaagt aagtctttcg ttaagatccc tttgtatggt tcttgtatcg acattaaact
     8941 cttgtgcaag ctcttgggcg cttagacttt ccccattgtt aaattttgat aaaatctgca
     9001 ccaagcgtat gcttaatttg tcgtattctt tcatgaaatt tccttgtggg ttaaaattct
     9061 ttttaacaaa cttacgcctt ctatgcctaa aatttcattt ctaagttttt tgacttcatt
     9121 taaacttggg gctttcgcat gaacggcttc attacggatt tcttgaatga tagtaagact
     9181 ttttgaaaaa ggataattga taaattgagt taaacttttt cctaaatgac attggatatt
     9241 ttcatgtctg agtagaaatt taatacttcc aagattgggt ttttgggtaa aaaaatcttt
     9301 aagtataaaa gatttgcctt ggacattata agctaaatca taaaggctag gatctttcat
     9361 acaagctttt aaaagaactt ttttggcaaa agcgtaaatt tcatattcta aggttttaga
     9421 gtatttgact ataatacttg taaaatcatt taaaagatcg ttttcgcttt gcaaaagctc
     9481 taattctgca tgaatgatat tgcttatgct atcagagtgt aagagataaa aaatcctttt
     9541 gccaaaaaca aagcgtatga aattttcttg catggctagg tattctttgc ttttatacac
     9601 acttagataa tgcttttcat ctcctaaaaa ataagaacac tcttctttta atctcacagg
     9661 caaaggatag gtgtaatgat tgccatagat agcataggtg tgatcgtttg gtgtgatgaa
     9721 attggctaaa aatttatctc ttaaacgact aaaatcttcc ctgaccaatt ctcttaaatc
     9781 actaataata aaaaagtctt ccacttctaa atttttttct ttataataac taggaatcaa
     9841 actttcatca acatttttag aaatttttac caccttagcg acaaataaat tagcataatc
     9901 gcttaaaaag agttgcaaga aattttcttc atttgtactt tggtaaattt cttctaagga
     9961 attttgcttt tcttgatcgt tgagttttga tttgattttg ccaaaggcaa cttgggattt
    10021 ctcttgtaaa atgcttaaat gttgcttgat gacatcttct tgatagtagg gattataaag
    10081 gattaaaagg tggttcatgc tttgccttat tttaggattt ctttaaaagg cttagattta
    10141 ttatgagctt caattaataa aattttacaa gtgtcatcta gatatttttc taatttttta
    10201 ttatctattt ttccattatt atataatata taaatttctt taagaattaa agtgctaaat
    10261 cttataacat taattaaatt gatttcagaa aggaaaacta ccggatttgt tataggattt
    10321 ttacttttta tccatgcacc accagtatca attaataaaa aagtaccaga tcctattaaa
    10381 agcattttat ttaattcagg tatgtcatct tttggtatac attctttcca ttcttttttg
    10441 tggtaaaatt tagcttttat tatatacata aaacgaatta gcattttatt aatcataaca
    10501 ggaatagaca tagtaactcc atgcctaaga tcatatcctt gttcaaaaac ttgggttgca
    10561 atttgtgcta gtgtttgtct atgttgtcca aaatttccaa aatcacaaag taaaaataaa
    10621 ttataaaaag gcataggaat gcctgcacct ctttccttgc ctccactaga tccacaccaa
    10681 tcagatgcta aatgtccaaa ccaattaaaa aatccacaaa atattttagc aataaaattt
    10741 cccccttgta attcaaaagt atttgtatct atggttatga tttttccgtt gctgacaaaa
    10801 gttgaagtat tggtaaattg atttactata gatacaaata acccgaaaat atctggagag
    10861 tgacctatgc tttttaaatg atgatttttc atacttaaat tatctacttt tccatttgtt
    10921 ccatttcttc catttgtagt agtttgatca taattaattt taaatttgtt ttccaaaaac
    10981 gctatacact tttagttaaa tctttgtttt tgtctaatgc tttttgctta tcccaaccac
    11041 ataattgtgc aaatttttga gtcatttttt ctaccgtctt atctaccttt tttcctagat
    11101 agctatcttt aggatttcca actaaaaaaa tgtccataat gccagctatt gctccacatg
    11161 ttattgctat taaataatca tacttatcgc actctgcatt tctatgggta aattcatctt
    11221 caattctttt tttaacatct gataaatttg aataagtgat caaaaatttt aaagaatctt
    11281 catttgagtt tattttttta agtttaaata tttttcaatt ttttgacaat atgtttccca
    11341 attgctataa gtgttaaaaa aaattttcca atgaatcgat tgattgattt tccttatatt
    11401 ctatattgct caaattttga tttttttctg tgatactatt ttgaatctgt tctatggtta
    11461 aacattattc tttgatattt ttttcaattt cggataattt attttgtatt aaaaagattt
    11521 gttgtttttc ggctaatata gccttttcta ttttggtgtt ttcttgtatt ttatccataa
    11581 aattatcctt atagattttt taatttaaaa aaatttgaaa gtttttctaa atccgacgaa
    11641 gaaagattgt cattgcgctc atactcatga gtattttgat tataggtata gtattgttct
    11701 ataaattgaa tatcatcttc ttttagatga ttatttattg ttatcaatga aagcgtttct
    11761 gggcaatata aaagtttttc cctttcttta aaagtttcat tattttttga agccaatttt
    11821 aataatttta ttaattcttg taaattttgt gtatttgtat tacattgctc aattaaatta
    11881 ttgatgatat caataatttg ggtaattgtt ttttgatttt ctttgagaat ttcttgaata
    11941 ataaaaagac gtaattgttg tttgttttta ttgtgatatt tttttgaaga atcaattagt
    12001 ggtaatttta ttaattcccc aaatcctagt aactccataa ttgatacaga catgccaatt
    12061 gtcattcctg aaagatgtaa accgtttaat gatatattat tttttgtagc tgtttcggat
    12121 ataaagttaa aaatttgctg aatttcttta ttatcgtcta atattatttg atattctttt
    12181 ttaatgattt cttttaccca atagatttct ttaaggtctt tgattttaaa aatgtctttg
    12241 ttttcataca aaaaattata aattttatta tcttcaaaat ctatatcaat taagtctttt
    12301 attagcgaaa ttaaaatata tttgaattgc ataaatctag attcttgttt tatgatgttt
    12361 agcaaatctt caaaactaga atgtttatta tgtaaaaaat cttgtatttt ataccttgtt
    12421 tctgaagcaa cattaatttt attcattaga gcaaaaattt tgattgatct tttttcatct
    12481 aaaaaaccgt attgatctaa tattatttta atgataactt ttatatagtt ttctttaata
    12541 ctttcgtttg ttttttctaa ggcttgtgga aacatacttt catttttaaa actttctatg
    12601 ttattttttg aagttaagat gtgtaaaaaa tttattataa gctcatcatt ttcttctatg
    12661 tagtttttct ttttgaaatc atcaaatgaa agataagatg ttccaagatt atgaaaagat
    12721 atgggaaatt tgatgtcttg aagagttgtt gttttttcag gtaaggattt atttgcctct
    12781 ttgaaatctt catagttgat tttcattaaa acttcatctt cttttctttt aaagataact
    12841 tctttgccag taaaacatat tccggtagtt ttgctaaaat aattaaagga tgttgaggta
    12901 tcataaaaag caataatgtg ttccgaagat accttaaata tcttcgaaat tgttgtaatt
    12961 tcttgctctt gcatattgaa aacaagtttt atttttttgt atttaatgaa tttttatcaa
    13021 tattttctat gataaattgg caaatatttt ccattaatgc atttccttgt gtttagtttt
    13081 ttgtattgtg ttttagtctt aaaattataa tttgaagtac tgctggtata gtaaccctat
    13141 aggctgggct agctaaatcc aatgcagtcc atgtggtcat aattgtccaa cctaccggac
    13201 cagaaaaaag acttaaagct cttgtaagtg ttgcatttgc cgcaagagat aaacctcttc
    13261 ctagtaaaac tttcataact tgatttgcaa ctattactgc aatttgatag cttttaaatc
    13321 cacctatttt aataagagat tgcaatccca ttacaactgt ttgtttatta atattagaaa
    13381 tgccaagttc gaaaatattt acaagttctc ttaatgtatt ttcatcttga gaatttttta
    13441 actcttcttc tattaatttg cataaaagtg atgtttctat ggagtttgtg ctttcatttt
    13501 catcaaattt tacatcaaat ttttttgc
//
LOCUS       DAPOLW010000039        13307 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.039, whole genome shotgun sequence.
ACCESSION   DAPOLW010000039 DAPOLW010000000
VERSION     DAPOLW010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13307)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13307)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13307
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.039"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(50..1087)
                     /locus_tag="ROE18_000793"
     CDS             complement(50..1087)
                     /locus_tag="ROE18_000793"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HDX3650984.1"
                     /translation="MKKLFICCLFIGVCMKKAKSRIAILGTGGTIAGFIDSTIATTGY
                     TAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFAEGIDG
                     VVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVANKE
                     AKNKGVMVAINDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVTKAHT
                     KNAPFDVSKLTSLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKD
                     VLKELLKKGLKVVVSSRVVAGCVAVSDSDEKLGFISAEDLNPQKARVLLILALTKTSD
                     PKKIQEYFLKY"
     gene            complement(1141..2712)
                     /gene="recJ"
                     /locus_tag="ROE18_000794"
     CDS             complement(1141..2712)
                     /gene="recJ"
                     /locus_tag="ROE18_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HDX3650985.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGKDEKHLKLVLTKENKTIEALFFNFDKEPELNQNISLLGSISKNE
                     FRGMVTPQFVVKEIL"
     gene            complement(2699..4330)
                     /locus_tag="ROE18_000795"
     CDS             complement(2699..4330)
                     /locus_tag="ROE18_000795"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HDX3650986.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESSEVFKDVSGILVAGGFGYRGVEGKIKAIQYARENKIPFLGICLGMQLALVEFA
                     RNVLKLKDVNSSEFNEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEVKSVKERHRHRYEANPKYRADFEKYGLIVSGESKGLIEAVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVICSFIKAAINYEDN"
     gene            4450..5073
                     /locus_tag="ROE18_000796"
     CDS             4450..5073
                     /locus_tag="ROE18_000796"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HDX3650987.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEAEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQEHKFIFEHCLHKDIE"
     gene            5193..6578
                     /locus_tag="ROE18_000797"
     CDS             5193..6578
                     /locus_tag="ROE18_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HDX3650988.1"
                     /translation="MDKQFFQDFLMLSQAHTITTLAMLCVIFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFALQYLANFPDAKEASNILWYSETKHWFAFVSSVFVAFIKMLVVPL
                     VSICIIKVIIEIDKNIKISSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIHEG
                     NKQIREIQTFSNIILGLIPSNIIAAINKENIIAIVIFSFFIGISAKKISKKEEYEQAF
                     KSFHNFILTFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYIA
                     MLIMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNS
                     AIANFVASIGTTTGLNGCAGYFPALAAVFVAFATHTHIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLAGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKEIYNS"
     gene            complement(6617..8986)
                     /locus_tag="ROE18_000798"
     CDS             complement(6617..8986)
                     /locus_tag="ROE18_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDX3650989.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLREYF
                     QKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVVIDGGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWG
                     SDEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(9002..10330)
                     /locus_tag="ROE18_000799"
     CDS             complement(9002..10330)
                     /locus_tag="ROE18_000799"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDX3650990.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLINDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEAIKKRALEHKNTLMVGRSHGIHGEPMTFGLVLAIWYDE
                     ISHAKELLEHAKEVISYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDAIFKRTFK"
     gene            10408..11310
                     /locus_tag="ROE18_000800"
     CDS             10408..11310
                     /locus_tag="ROE18_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDX3650991.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNKILNGLVELIVYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRLDKETSGLILIAKNKKAQIDLKTLFEKKLVQKEYLALAHGKIE
                     ENFIVDKAINLTKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLHYKNHTILGDPLYGLSKEQIESILDEKLNPKERLKLTGALRLCLHSYRLKF
                     QYKNQNFDINSKINIKEIFNNSIK"
     gene            11423..12301
                     /locus_tag="ROE18_000801"
     CDS             11423..12301
                     /locus_tag="ROE18_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HDX3650992.1"
                     /translation="MKFVNFIQGQKPGLGVLNSSGKIVSFDDLGIETNDMNEFIIHFD
                     KFKHKLTDLDSKIAYEIPQENYLAPIIEPRQDIICLGINFLDHAKESAKFKGEKFEER
                     EYPVYFGKRCNQATPPFGDIPLHADVTSQLDYECELAFILSKDAYKIKAKDAKDYIFG
                     YTIINEISARELQKRHKQFYRAKSLEGGTIMGPYITSVDEISYPPKLQLQSYVNDELR
                     QNSNTQLFIFDIAYVLEELSAGMLLKAGSIISMGTPSGVGMGLNPPTFLKSGDKVRCV
                     IENLGELCNKIKNINY"
     gene            12365..13279
                     /locus_tag="ROE18_000802"
     CDS             12365..13279
                     /locus_tag="ROE18_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HDX3650993.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAKLGKSLYM
                     DKSLSKDGKVSCNTCHRLDQHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLTEQAMGPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENIALAIAE
                     FEKTLITPNSPFDRYLSGDQNAISAQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
BASE COUNT         4492 a         2446 c         1810 g         4559 t
ORIGIN      
        1 ttgacttagg gaagataagt tccctaagtt tagaaatatt taaaaaattt taatatttta
       61 aaaaatactc ttgaattttt ttaggatcac ttgtttttgt aagtgctaat ataagcaaaa
      121 ctcttgcttt ttgaggattt aaatcttcag cactaataaa acctaatttt tcatctgaat
      181 cactcacagc aacacaacct gctacaaccc ttgaacttac aacaacctta agcccttttt
      241 ttaaaagctc ttttaaaaca tctttttgat ttttgtgtat acttcctgct ccacttcctg
      301 caacaactat gcccttagtt ccatgttcaa ataaagcttt tgcagcgaca ccactaccat
      361 catttgaata gctataaaga atatctactt ttggcaaact tgtgagtttg cttacatcaa
      421 aaggagcgtt ttttgtgtga gctttagtaa cattattata gaaaaagact ttaccatcta
      481 ctatataacc caaatcccca aaatcaggag aagagaaagc atcaacattt aaactatgag
      541 tttttactac gcctctagcg cttaaaattt tatcatttat agctaccata acacccttat
      601 tcttagcttc tttattggca actaatgcca ctgcattata aagatttttc ggaccatccg
      661 cacttatagc agttgatgga cgcatagcgc caactagaac tacgggctta tcacttttaa
      721 tggttaaatt taaaaaataa gcagtttctt ccatagtatc agtaccatga gttatcacca
      781 caccgtctat cccctcagca aaaagcttag caattttttt agcaagcctt aaccaaattt
      841 catcacacat atttgaacta tcaatatttg ctatttgctc ccaactaata tctgctaaat
      901 ctctaatttg cggaactgct ttaattaata catctatatc aatggctccg gccgtatatc
      961 ctgttgtagc aatagtgcta tcaatgaagc ctgctatcgt tccgcctgtt cctaaaatag
     1021 caatccttga tttagctttt ttcatacata ctcctataaa aagacaacat ataaataatt
     1081 ttttaatctc ttgtatatta attttttaat gttattaatg caaattataa gtaaaaattt
     1141 ttataaaatc tctttaacaa caaactgtgg agttaccatt cccctaaatt cattcttaga
     1201 aatacttcca agcaaagaaa tattttgatt caattctggc tctttatcaa aattaaaaaa
     1261 taaagcttct atggttttat tttccttagt taaaacaagc tttaagtgtt tttcatcttt
     1321 acctagaagt tttttatttt ttacacaaag attttctaaa acaaaaaaag gtcgtggatt
     1381 tttatgtcca aaaggttcaa aagattctaa aatttcaagc atttcaaaat caatttcgct
     1441 aggttctaag attcctaaaa tttcatctgt atccaaaaat tcactttcag aaatttgcga
     1501 acattctttt ttgattttat ttttaaattg ttcaaaattt tcagagttta aactgattcc
     1561 agcagcacct ttatgaccac cataattgct taatatagaa tttgtcttgg aaattaaagc
     1621 taaaatatca atcttgccaa cacttcttgc gctgcctttt aagtgttctt cattttgaga
     1681 aaatacaaaa gcaggtttat taaaatgttt agctaaacga cttgccacaa tccctaaaac
     1741 accttcatgc caatttaaac ccgatacaac aatacaagaa tcgttttcat cgatttgatt
     1801 taaactatct tcaaaaagct gtttttcttc atctttacga ctttcattaa aactaacaat
     1861 ttgctctaga tattctaaag ctttattaaa atctttagtg tgtaaaaatt cataagaaat
     1921 acttgcatca tccattcttc cagcactatt tataagcgga gcaattaaaa atcctatatt
     1981 atcaagagca aatttatcct tttgataata atgcttaata gccctaaaag cagccctttt
     2041 agatttgtta atatgatcta tgccacgcct tactaaagca cgatttaaat ctctaagttc
     2101 catcatatct gcaacaattg caatcgccaa aagttctaaa aatttacaca tgtcatattt
     2161 aagcttgcac acctctttta aagccgctat caaataccat gcgacttgag ctccacaaat
     2221 ttcaatttct ggaaaatcac aatctttttg ctttggattg ataatggcaa aagcatcagg
     2281 taaaacatct tgaggcatat gatgatcagt gataatcaaa tctatatttt tttctttaca
     2341 gagtttggct gcttcaagag cagctattcc attatctact gttattatta aatttacatc
     2401 aagttcgttg atgatctcag catttaatcc atatccatct ttaaaacgat tcggaattct
     2461 tataatataa tcaaaaccta tatcatcgaa aaattctgcc ataataacac aagaaatgat
     2521 tccatcaaca tcataatctc ctactatagc gactttctca tttttttcta cagcttcttt
     2581 gatgcgatta gctgctttat atgcatcctt taaacagcat ggcaaaggca gatcacaaag
     2641 tttggtatgc aaatcttttt caaagcgtga agccaaaatt tttttaattt catttttatt
     2701 aattatcttc atagtttata gctgccttga taaaactgca aatcacagga ttaacatgct
     2761 caagtcttga tgtaaattct ggatgaaact gcacagccaa gaaaaaagga tgacagttaa
     2821 gctcaactgc ttcaatcaat cctttgcttt caccacttac aatcaaaccg tatttttcaa
     2881 aatctgctct atattttgga tttgcttcat agcgatgacg atggcgttct tttacactct
     2941 ttacttcatt ataaacctta gccaaaaggg atttttcctt gatatcacat ttataagccc
     3001 ctaaacgcat agttccacct aaaggagttt ttgcagtacg aatttgtttt tctccatttg
     3061 tatccataaa ttcatcaatc aaataaacca caggattttg gcatttttca ttaaattcac
     3121 ttgaatttac atctttaagt tttaatacat ttctggcaaa ttccaccaaa gcaagctgca
     3181 tacctaaaca aattcctaaa aaaggaattt tattttctct tgcgtattga atggctttta
     3241 tcttaccttc tacaccacga tatccaaatc ccccagcaac caaaattcca ctcacatctt
     3301 taaatacttc agaactttcc atattttcaa gtttttcact atctacccat tttaactcca
     3361 ctttagtatc tagggctgca cctgcatgta taatagcttc agtaaggctt ttataacttt
     3421 cttttaaatc cacatatttg cctacaaaag cgattttaac ttcattgctt ggagctataa
     3481 ctctttttac caaagagtcc caattttcca tattaggttt taaatttttc aaatccaaaa
     3541 tttcagcaat agggcttaaa atatcttgct ttaaaaaatt aagtggaatt tgataaatac
     3601 tagccgcatc aacactttct atcacgcaat ttttttctac cccgcaagaa atagcaattt
     3661 tatcttttaa atctctatca agagcttttt cactacgaca aataatcata tcaggactaa
     3721 tgcctatgcg tcttaactcg cctacactat gttgagttgg ctttgttttt aattcccctg
     3781 cagccttaat aaaaggtact agagtaagat gaatattcat agcattattt ttacccactt
     3841 ccaaacgcaa agcacgaata gcttctaaaa aaggcaagcc ttctatatcc ccaacagttc
     3901 cgcctatttc aacgataagt atatctttgc cttctcctgc ttttttaatg cgatctttga
     3961 tttctcctac tatatgaggg ataacttgaa tggttttgcc aagatattct ccacgccttt
     4021 ctttttcaat cacactttga taaacccgtc ctgtagtgaa gttattatct tgagataaac
     4081 tctcatccaa aaaacgctca taatgcccca aatcaagatc cgtttctgct ccatcatcag
     4141 ttacaaaaac ctctccatgc tcaaaaggac tcatagtgcc tggatcaaca ttgatataag
     4201 gatcagcttt taaaatactc actttaagcc ctgaattttt taaaagtgtt gcgatagaag
     4261 cagcggctat ccctttaccc aaagaactta aaactccacc tgttacaaaa atatattttg
     4321 tttgtttcat tgataataag ccttattttt ttatctaatt atagcttgat aaaacttttt
     4381 atttcattag aattttaagt aaaaaatgca agaattacaa aaaatatttt tatcaaaaaa
     4441 ggaataagca tgcaaatcac tttacttttt cacactccat tatctgtttg ttctcatgca
     4501 acaagaactt gttggcaaag ctttgaaaaa ggcgattgcg gtggcgaaaa agataaagaa
     4561 cttatcgatc gcgtgggtaa taaattcaaa cacgcttcaa ccttagaaca tctaaactat
     4621 actttttata tacaaggaat ttcaagagct tgcttacaag aagttgcaag acaccgtcac
     4681 actagtccta gtgtaaaaag cacgcgttat accttaaaag aacttcgcaa tgaagctgaa
     4741 tttaaaatag gagattttga aaatgcaagc cgttatcttg tgctttgtgg caatgaagag
     4801 gttgataacg caagcattaa agccttagaa aatttacgca ccattttaca aaaaagcatt
     4861 agtctagata tagccaaata ttgcttacca gaaagctata aaaccgaact tacactaacg
     4921 attaatgcaa gaagtttaca aaattttata tctttgcgta gttcaaaatc agctctttgg
     4981 gagattagaa atttagcaaa tgctttattt gaagccttac cacaagaaca caaatttata
     5041 tttgaacatt gcctacataa agatatagaa taaatcatac taattttatc ttatttaaaa
     5101 tatttttatg ctaccattta taaaatcaag ctttacgcaa gtatattttc atataccttg
     5161 tgcttgatta tagtttctta taaggacttt ttatggataa acaatttttt caagattttc
     5221 taatgctttc acaagctcat actataacta ctcttgctat gctttgtgtt attttttacg
     5281 cattaaaaaa aatgcgggat ataaaaatca atttttctct tcgcatgcta tttgcgcttt
     5341 taatgggttt ggggtttggt tttgctttgc aatatttggc aaattttcca gatgctaaag
     5401 aagcaagtaa tattctttgg tatagcgaaa caaaacattg gtttgcattt gtaagttctg
     5461 tttttgtagc ttttataaaa atgctggttg ttcctcttgt aagcatttgc attataaaag
     5521 taattataga aattgataaa aatatcaaaa tatcctcctt gcttggaata agtctttttt
     5581 ggatactctt tagcacagcc atagctgcaa ccttgggtat atttttaggt tatagttttg
     5641 atttaggaag taattttgct atacatgaag gaaataaaca aattcgcgaa attcaaactt
     5701 tttcaaatat tatactaggg ctaataccta gcaacatcat tgcagctatt aataaagaaa
     5761 atattatagc tattgtcatt ttttcttttt ttataggaat tagtgctaaa aaaatttcta
     5821 aaaaagaaga gtatgaacaa gcctttaaaa gttttcataa ttttatccta accttttata
     5881 atattatgat gaacatgact gctacagtca ttagatttat gccttatgct gtagtttgta
     5941 tgatggctaa tgtgctttta agcaatggtt ttgaagctat caaaacagct ggacttttta
     6001 taatgcttat ttatatagct atgttaataa tgttcggggt gcatttttta cttcttgctt
     6061 cacaagggct aaaccctata aaatatgcaa aaaaagcatt tcctgtatgg ttatttgcat
     6121 ttagctcaag atcttctttg ggcactttgc ctatgactac ttcaactttg caaaataaat
     6181 ttggagttaa ttcagctata gctaattttg tagcatctat aggcacaaca acaggactta
     6241 atggttgtgc aggatatttt ccagctttag cggcagtttt tgtagctttt gctacacata
     6301 cacatattga ttttacattt gctttaatga tagttttggt agctgttatt ggatccttgg
     6361 gtatagctgg ggtacctgga agcgcaacta tggcggcttc tattatgcta gcagggattg
     6421 gatttggtaa taactttgtc atgctaagtt tgattttagc catagatcct attatagata
     6481 tggcaagaac agcaagcaat gtctcaggag ctatgacttc ggcactttgt accgcaaaaa
     6541 atctcaaagc tctagataaa gaaatttaca attcttaatc ttttaaaacc caatgctttt
     6601 cattgggttt tagtatttat tggcaacctt cacattctat gctacgatct gcaacattga
     6661 ctttttcact atcagggctt tcgcttctta gataataagt agattttact ccaagctccc
     6721 aagcgagttg ataaatttca tttaaatatc ccccacttgc tttatcaagc gataaaaaga
     6781 tatttaaact ctgcccttga tcgatccatt taccacgcac agcagcagcc tttacaagaa
     6841 ttttttgatc aagttcgtag gctggagtat agtattgcca agtatcaagg cttaaatttg
     6901 gcacaacaac aggtatcata ccacttaaat tttgttcaaa ccactttctt ttgtaaacag
     6961 gttctatagt ctgcgtagta cccaccaaga tagaaataga agaagtaggt gcaatggcca
     7021 tcaaataacc atttctcata ccatcttttt taactttttc tctaagttta acccagtcgc
     7081 attcactttg atcaaataag ccctctctta aagttaaagc tttagcctta ggacttgcta
     7141 catcaatagg aaaaatcccc ttgctccaat ttgatccttc aaaatcttca taagaacctt
     7201 tttcaagagc taaatttgaa ctcgcattaa tagcctcaaa gctaatttgc tccataatct
     7261 catcgatttt atttaaatgc tcatcgcttc cccaatgaat cttagcctca gcaagcattt
     7321 gtgcctcgcc cataactcca agacctatgg cacgagattt taaatttgta tcttttactt
     7381 ttctatgagg ataaaaattt aaatcaatta cattatcaag catacgaata gctgttggaa
     7441 caacacgctc tatatcttct ttagtatata ctttgctaag atttatactt gctagattac
     7501 aaacggctgt ttttccatca tttttatatt tttccactat ataaacttta ttaccatcaa
     7561 tgctatctaa agttgatatt tttttggctg gtttttcata tcccccatcg atcacaacct
     7621 tttgctcttc atcaaaatga agctcatctc cattttcaaa aactacttta atttgataat
     7681 aatttggctc ggtattttga aaaatttcag tacataaatt tgaacttcta ataattccta
     7741 catgagcatt tggatttgct ctattagcac tatccttaaa acataaaaat ggcaagcctg
     7801 tttcaaaata atttagcaaa attttcttcc aaagctcttt agcttctacg atttctttgg
     7861 taatgctttc atctttttca tattcttcat agcgtttttc aaaagcctcg ccatataaat
     7921 cacacaaatc cgctgtatct gcaggatcaa aaagagtcca tttatcatta gctcttactc
     7981 ttttcataaa aagatcattg atccataaag cagggaaaag ttcatgagca cggcgtcttt
     8041 cttcacctga atttttacgc aaatcgataa aatcacttat atccatgtgc caaggttcta
     8101 tataaacggc tatagctcct tttctggttc ctagttgatc tactgccacg gcaatatcat
     8161 tagtaatttt caagaaaggt ataatccctc ctgcggcatt tttatgccca tctatgcttc
     8221 cacccatagc acgcacttta gaccaatccc aacctatacc accaccaaat ttagaaagca
     8281 aagccatttc ttggtaagaa tcaaaaatac cttcaatatt atcaggggtt gatcctatat
     8341 aacaagaact aagctgatgg cgcgttgttc ttgcattaga taaagtcgga gttgcaagca
     8401 tgagttcaaa tttagaaata agatcgtaaa atttcttcgc ccattcttga ggattaaatt
     8461 cattctgcgc taaaaacatc gcaatggcca taaacatttg ttgaggaagt tctataggca
     8521 tacctttact atctttaatc aagtatctat catataaagt tttaatacca agataagtaa
     8581 attgcatatc gcgttcaggt ttaatataag catttaaatc atctaaatca tatttttctt
     8641 taagaccaag taaaattctt ccttcttttt cacccttttg aaaatactca cgcaaatgat
     8701 tatagcgatt cataccatta acttttttat ataaatcaaa taaaaaaagt ctagctgcaa
     8761 caaaggtcca atttggacaa tcaatatcta tcttatctac tgcagtttta attaaagttt
     8821 tttgaatctc ttcagttgaa attccatcac gaaattgaat ctttgcatca agttcaagtt
     8881 cgcttaaatt cacaccttct aaatctttta cagcatcaga ggtgcatttt ttgatcttag
     8941 aaacatccaa ttcttctgta cgaccatttc ttttaataac tttcattgcc ttccttgctt
     9001 tttatttaaa tgttctttta aaaattgcat caacattttt tgtatagtag ttataatcga
     9061 aacattttct tacatcctct tcgctcaaac tttttcttaa atcttcatcg cttaaaagcg
     9121 ctaacaaaaa caaactttca tttttttcat tgatagcagc cttgccattt tgcaaatctg
     9181 cccaaacttt catagcgttt ctttgaacta ttttataagc ttcttcacgg ctaatgcctt
     9241 taaatggaag ttctaaaagc accctccctg aaaatacaag cccgcctgta agatttaaat
     9301 ttttcatcat attttcagga taaaccaaaa gcttatcaat caaatttgta agacgcataa
     9361 gcataaaatc agccgtgata aaagcatcag gcaaaataaa tctttcaaca ctagaatgag
     9421 atatatctct ttcatgccaa agtgcaacat tttccaaagc tggagttaca aaagatctaa
     9481 gcacacgaca aagtcctgtg atattttcac ttaaaacagg atttctttta tgtggcatag
     9541 ctgaacttcc tttttgtcct acactaaaat actcttcagc ctcataaact tcagttcttt
     9601 gaaaatgtct tatggctaca gcgatttgct cacaacttga agctaaaatc gcaatagcag
     9661 aaataacctg agcataacga tctctttgga tcacttgatt tgaaacaggg gcagctttaa
     9721 gacctaaatt tttacaaact tcttcttcaa attccaaagg agcatgagca aaatttccca
     9781 ttgcaccgct gatttttcca tagcttatca cttcttttgc atgttctaaa agctcttttg
     9841 catgcgaaat ttcatcatac caaatagcta acaccaaacc aaaagtcata ggttctccat
     9901 gaattccatg acttcttcct accattaagg tgtttttatg ctccaaagca cgctttttaa
     9961 tcgcttctaa aagcaaagaa acatcttcta aaataagctc caaactctct tttatctgta
    10021 aagcaacagc cgtatctata caatcagaac ttgtcattgc ataatgcaca aaacgactct
    10081 cttctcccaa actttcactt acacttgtaa gaaaagctat aacatcatgt tttgtggttt
    10141 tttctatttc atctattctt gcaatatcaa attttgcatt tttaagaatt ttttcgcagt
    10201 ctgtgtcatt aatgagaccg agtttattcc aagcttttac agcggctaat tctactttta
    10261 accacgcatc gtattttgct tgcatgtccc attttttagc catgatttct ctgctatatc
    10321 tttcaaccat ctttgaaacc tttttagcta taattttata ttttaaaaaa cagaaattat
    10381 atcaaattat cctaagaaag ttattaaatg gcctacataa aaataaaact ctcaaataat
    10441 ggaaaaaagg cgtttcaagt ccttatggaa aatttaaaaa ttagcataaa tgaagcacaa
    10501 aaactcatag acaaaaaaag acttttttgt gatggaattt tagtagaaga aaagaataaa
    10561 attttaaatg gtttagtaga gcttatagtc tatgaaaaca atcccaaagg agtagaaatt
    10621 gtctttgaaa atgaagactt tgccatactt gaaaaagaaa gtgggatctt aagccatcca
    10681 aatggtagac attgcaaata cagtcttagt gatgaaattt ggcatctttg gggaaaagaa
    10741 gcttgcgtag cacacaggct cgataaagaa acgagcggac ttatacttat agccaaaaat
    10801 aaaaaagctc aaattgatct taaaactttg tttgaaaaaa aactagttca aaaagaatac
    10861 cttgctctag ctcatggaaa aatagaagaa aattttatag ttgataaagc tataaattta
    10921 actaaaaact acgatgatgt aaaaacaaga atgcaaattt gcaaagaagg aaaacaagct
    10981 atcactgaat ttgaaatttt agaatacttt cctaaaatca acgctactct tttactttgt
    11041 aaacccttaa caggcagaca acatcaaata agagtgcatt tacactataa aaatcatacc
    11101 attttaggcg atccacttta tgggcttagc aaagaacaaa tcgaaagtat tttagatgaa
    11161 aaattaaatc ctaaagaacg cttaaaactt acaggtgcct tgcgtttgtg tttgcattct
    11221 tatcgtttga aatttcaata taaaaatcaa aattttgata tcaactcaaa aataaacata
    11281 aaagaaattt tcaacaattc cataaaataa aatgatgttt cactacgcta caatcaatca
    11341 cttttttacc aaattttaaa acaaaaaaat aattcttgct aaaactttaa gtataattaa
    11401 ataaaaaagc gagattttcc aaatgaaatt tgttaatttt atacagggtc aaaaaccagg
    11461 tctaggagtg ctaaattcta gtggaaaaat tgtaagtttt gatgatcttg gcattgaaac
    11521 taacgatatg aatgaattta ttatccattt tgataaattt aaacacaagc ttacagactt
    11581 ggattctaaa atagcctatg aaattccaca agaaaattat ctagccccta ttatagaacc
    11641 tcgccaagat attatatgtc ttgggattaa ttttttagat catgccaaag aatctgccaa
    11701 atttaagggt gaaaaatttg aagaaagaga atatcctgta tattttggaa aacgctgcaa
    11761 tcaagctacg ccaccttttg gcgatatacc tttacatgca gatgtaactt ctcagcttga
    11821 ttatgaatgt gagcttgcat ttattttaag taaagatgct tataaaatca aagctaaaga
    11881 tgcaaaagat tatatctttg gctatactat tatcaatgaa atttcagctc gcgaacttca
    11941 aaaacgccac aaacaattct accgagcaaa aagtcttgaa ggtggcacta taatgggacc
    12001 ttatatcaca agcgtagatg aaatttctta tcctcctaaa ctccaacttc aaagctatgt
    12061 caatgatgaa ctacgccaaa actctaacac tcaattgttt atttttgata ttgcttatgt
    12121 cttagaagaa cttagtgcag gcatgctttt aaaagctgga agtattatat ctatgggaac
    12181 tcctagtgga gtaggtatgg ggttaaatcc acctactttt ttaaaatcag gagataaagt
    12241 acgctgtgta atagaaaatt taggagaact ttgtaataaa ataaaaaata tcaattatta
    12301 aataatttac taaaattata ctataatggc attttaaaaa cttaaattaa ggcagaaatt
    12361 tatcatgaaa aaaataataa tgattttatg tttatcttat gcaaatatag tctttgcagt
    12421 agatatgata acccctattc caaattccat ctcttatgat aaagaaaaag ctaaacttgg
    12481 aaaaagtctt tatatggata aaagtttatc taaagatgga aaagtttcat gcaatacttg
    12541 ccataggctt gatcaacacg gtgttgatgg gcttgaattt tcaataggag ttgataatca
    12601 actcgataaa ccctttaaca ctcctacaac ctttaattct gtgtttaatt ttgtgcaatt
    12661 ttggaatggc agagctaaag atttaacaga acaagctatg ggaccttttt tcaatccaaa
    12721 agaaatgggg ctaagtcctg aacttctttt acaaaaagtt aattcaaatg aaaattatgt
    12781 aaaaactttt aaaaaacttt atggagaagt tacggtagaa aacatagctc ttgcaatcgc
    12841 cgaatttgaa aaaaccttga tcaccccaaa ttctcctttt gatcgctatc ttagcgggga
    12901 tcaaaatgct atttcagctc aagctaaaaa aggttacgaa gattttaaag ctaatggctg
    12961 catctcttgt catcaaggtc aaaatatagg tgggaatatg tttcaaaaaa tcggtatttt
    13021 tgaagaatac ccaaaccaag aagatttagg gcgctatgaa atcacaaaaa gagaagctga
    13081 taaaatggta tttaaagttc ctagtcttag aaatatagcc aaaaccgcac cttattttca
    13141 tgatggatct atacctactt tagatgcttg tgttcagttt atggcttact atcaactagg
    13201 aaaattttta gatcaagaaa cagttgacaa tatagttgca ttcttagaaa gcttaacagg
    13261 agaatatcat gacaaataaa aaaagttcat ttttgataaa atttatt
//
LOCUS       DAPOLW010000040        13009 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.040, whole genome shotgun sequence.
ACCESSION   DAPOLW010000040 DAPOLW010000000
VERSION     DAPOLW010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13009
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.040"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..492)
                     /locus_tag="ROE18_000803"
     CDS             complement(<1..492)
                     /locus_tag="ROE18_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDX3650994.1"
                     /translation="MIINQIYSIDSCDDVELNIKRGSKLEFRLTYDDSKEIEAIVCII
                     PGGAEDMNNYIYVDDYLARNYNVAIININYHCIGNRPHLGSSFYLDDIDKFILDTSLK
                     TINLNHINVFDINSYENLNNAFIRIDQEIQKLKLNQKLNQNYKLRTHVSFLPSKNEYQ
                     NFGI"
     gene            complement(554..1294)
                     /locus_tag="ROE18_000804"
     CDS             complement(554..1294)
                     /locus_tag="ROE18_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HDX3650995.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            complement(1291..2379)
                     /gene="pstA"
                     /locus_tag="ROE18_000805"
     CDS             complement(1291..2379)
                     /gene="pstA"
                     /locus_tag="ROE18_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HDX3650996.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQITEKSWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLMQKGEIELKFNSNFFLNGDSKSPENSGILSSVVGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAGAIGETAPLMIIGMIAFIPDVASSIFDPTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVMLNLSAILLRKYFQGKLK"
     gene            complement(2376..3290)
                     /gene="pstC"
                     /locus_tag="ROE18_000806"
     CDS             complement(2376..3290)
                     /gene="pstC"
                     /locus_tag="ROE18_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HDX3650997.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVVT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFVITLIINMFSVYLINRFHKRKNL"
     gene            complement(3300..4295)
                     /locus_tag="ROE18_000807"
     CDS             complement(3300..4295)
                     /locus_tag="ROE18_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDX3650998.1"
                     /translation="MKKILSLSVASLALCGALNAADLKIAGSSTVYPFTSFVAEEYAA
                     IHNTKTPIVESLGTGGGFKVFCEGITDISNASRAMKFSEFETCKKAGVTDIVGIMVGY
                     DGIVLAQNKTNAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTVEELVMSDISKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGLFGYGFLVSNVDKINAADIDGVKADEKNIADGKYDLARSLFIYINAKKNPKEAF
                     DFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVEDRKILNDELVKAGKVF"
     gene            4475..4978
                     /gene="ctf"
                     /locus_tag="ROE18_000808"
     CDS             4475..4978
                     /gene="ctf"
                     /locus_tag="ROE18_000808"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HDX3650999.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
     gene            5021..6397
                     /locus_tag="ROE18_000809"
     CDS             5021..6397
                     /locus_tag="ROE18_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HDX3651000.1"
                     /translation="MTYFSLEFSILMIAFFAIYWTFKNNYKIQNILILIFSYIIYILI
                     NPYFALVLFIYTFFIHYFALLIFVRRKRYIFATCIAFIILNLCFFKYFPSIKGSVDEI
                     LNFFGLEFLNIDLVLPIGISFYTFTSITYLVEVYQKRRLESFLNLATFLSFFPTLLSG
                     PIMRSSFFFEQAYQKREFKHANLIIILLVFGIVKKVLIANYLGIYAKSILDFPQSYNF
                     IQLLSAIYAYAIQIYCDFSGYVDLVCAFALMLGFTLPSNFNMPYLAKNLKDFWARWHI
                     SLSTFIRDYIYIPLGGNRKGMPRTIVNILIAFILSGMWHGNTLAFIVWGLLHGIGIVF
                     IHLLALSKFSLQKIPALGRFLTFQFVCFTWIFFYYSKNLEDAIEYFKACYYNFFQIPS
                     YNDIYMLVAFGVLFMIYPLFINFKEYCIKILNLTPFLLKPFIIAFILLLVFAFMPDGI
                     PDFIYSSF"
     gene            6398..7408
                     /locus_tag="ROE18_000810"
     CDS             6398..7408
                     /locus_tag="ROE18_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HDX3651001.1"
                     /translation="MSVVRFFFILIIVLGLVVVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLPQTNEETTNQENKSIDENLSKIDKVLNTLENDENTS
                     HKETNPTLIRDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFIKNSNIKYLVVLLGANDPWDIKKGGNYHRFGSPS
                     WIDIYTSRVDEIIKIAKKHKAKVFWFEIPPVKKEDLNKKIQVLNKIYSDEILKNKEIF
                     INTKLFFSVNDEYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            7395..8573
                     /locus_tag="ROE18_000811"
     CDS             7395..8573
                     /locus_tag="ROE18_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HDX3651002.1"
                     /translation="MLVNKFKIILLFFIIFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVLKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKIKGAKINLDTTLDKKKFK
                     IGFLFKAKQNTNAFSIKDAKNQSYELRTTQINKWSYKELELDLPLQISALQKDAELGG
                     YFITNKDNNVFLDTIAINGAKSDLWLSWNQEVVKKELGLLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDMHQFMQDSGGKNKWIEQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
     gene            complement(8576..9946)
                     /locus_tag="ROE18_000812"
     CDS             complement(8576..9946)
                     /locus_tag="ROE18_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDX3651003.1"
                     /translation="MKIILSIFLAFFLSACGVKLSLPKEVDLTQEQMKDLNLTYDWYR
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALARADLIDYDLYPTLSGNLGFGADKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLSNLEQMKELYNYKYKLGKIEELDLLNIEQSLLRAKQNLLSN
                     DQNRNLLIKNLQDLLARQEGFAYIEYFKTLSLNDFKTLSPDFNIPLKALAYRADVRSK
                     LNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEILSGNVKISLPFLDYG
                     RVKQNIKISQFTYEQLLISYEQALQSAMNEFALNYKDYQSDTLLLQNLQNINIKQELI
                     TKAYYEKYILGKSELKDYLDANNTLNSTQQEFLRARFNLLKTINSYYQITALSFNDEN
                     LEFPKY"
     gene            complement(9948..11873)
                     /locus_tag="ROE18_000813"
     CDS             complement(9948..11873)
                     /locus_tag="ROE18_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDX3651004.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYVFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKNLQERSQNAKKLLNDLELAHKLDSKPNELSGGQQQRVSIARALINGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNEQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLILKTMPKEKKTLTLLKNQAFECFKIAYSSILAHKLRSILTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIEIRPGKGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRFYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTILTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            complement(11873..13009)
                     /locus_tag="ROE18_000814"
     CDS             complement(11873..13009)
                     /locus_tag="ROE18_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002847154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDX3651005.1"
                     /translation="MLGSVGAYFIFFNNDEKISYLTQKIQKKDISQTIEAVGKVYAKD
                     QVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKAQLESAKANLESK
                     KVALEIANKQYQREQKLYAAKASSLENLETQKNNYYTLKANVAELNAQVVQLEITLKN
                     AQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDEMEVRMEIAEADV
                     SKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSSSSSSSSSSSNAI
                     YYYAKFYVANKDDFLRIGMSIQNEIVVASAKAVLAVPTYAIKSDPKGYYVEILENQKA
                     VKKYVKLGIKDSINTQILEGVNEDEELIVSSSADGLAPKMKLRF"
BASE COUNT         4462 a         2239 c         1718 g         4590 t
ORIGIN      
        1 tataccaaaa ttttgatatt catttttaga tggtaaaaag cttacatgcg ttcttaattt
       61 atagttttga tttagttttt gatttaattt taatttttga atttcttgat ctattcttat
      121 aaaagcatta tttagatttt cataagaatt tatatcaaaa acatttatat ggtttaaatt
      181 gatagttttt aagctagtat ctaaaatgaa tttatctata tcatctaaat aaaaactaga
      241 acccaaatga ggtctatttc ctatgcaatg atagttaata ttaataatag caacattata
      301 atttctagcc aagtaatcat cgacataaat atagttattc atatcttcag caccacctgg
      361 aataatacaa acaatagctt ctatttcttt actatcatca taagtcaatc taaattctaa
      421 tttacttccc cttttgatat ttaattctac atcatcacaa gaatctatag aataaatttg
      481 gtttataatc atattaaacc tttttttgga aatttttaat taattatatc atcaaatttc
      541 caaaaaataa atctcaccca aaagcaccgc ttaagtaagc cttggttttt tcttgttttg
      601 gattttcaaa aaattccttg ctttctccaa attctataag ctcacctagg tgaaaaaatg
      661 ccgtataatc agctacgcgt ttgccttgtt gcatattatg cgtaaccatg atcatagaaa
      721 gattatggct taattctttc aaaagctctt caatcacgcc tgaactaata ggatcaagtg
      781 cagaagttgg ctcatctaaa agcaaaagtt taggtttgat cgctaaagct cttgcgatac
      841 aaagacgttg ttgttgtccg cctgaaagag ctagggcatt ttgctttaat ttatctttaa
      901 cctcttcaaa aagccccact ttttgcaagc aatccaccac caaagcttct tcttcatctt
      961 tgtttttaat cataccatga agttttggtg cataagagat gttttcataa atgcttttta
     1021 caaaaacatt aggttgttga aaaaccatgc ctacattttt acgcaaggct actacatctt
     1081 gattttttac atcttttcct tcaatttcta ccaaaccatc gatttttgcg attttatcat
     1141 tcattctgtt aaaacagcgc aaaaaggtag attttccaca tcctgaagca ccgatgagtg
     1201 cagtgatttt attttgctcg atttgcatat tgatatcaaa taaagcttgt ttttttccat
     1261 aaaataaatt taaatttgtt gtttttgcta tcactttaat tttccttgaa aatattttct
     1321 taataatatt gcactaagat ttaacataac taaaagtcct aaaagcacaa taatacccgc
     1381 tgctgttctt tctaaaaatg cacgctctgg catagccgac catgagtaaa tttgagcagg
     1441 taaaacgcta gttggatcaa aaatcgaact agctacatca gggataaatg ctatcatacc
     1501 gataatcatc aaaggtgcag tctcgcctat agcccctgct aaagtcaaaa tagaacctgt
     1561 taaaatcata ggcatagcta aaggtagcat aatgcctttt accatttgaa cctttgtcat
     1621 acctaaggca taagcagcat ttttcatatt gatatccaca ctttttaaag ctgccttagt
     1681 tgaaacaatg ataataggca aactcatgat cgccaaagta agcccaccca ctaaagcact
     1741 tgaacgaggc attccaaaaa gattgataaa cactccaagt cctaaaagtc caaacaagat
     1801 actaggaata cttgcaaggt tgttaataca cacttctata aaatgcgtaa ggatattttg
     1861 tggtgcaaat tcttctaagt aaattgccgc tgcaacgcct ataggaacac tcacaaccat
     1921 acaaacaagc ataacaagca aagtccctac aactgaagat aaaattcctg aattttcagg
     1981 agattttgag tctccattta aaaagaaatt gctattaaat ttaagctcta tctcgccttt
     2041 ttgcataaga tcatcgacta aagttctttg tttttcacta aggcgattat atttttgctt
     2101 catatattga tctacttctg aatttgccaa aagccaagat ttttcagtga tttgccctgt
     2161 tcttatcttt ctttgctcag cacgagataa aagatcataa gcaggagaat ttctattagc
     2221 ctctacaaaa atataggttt gcttaaaagc aggaaatcca agataagcca cacttcctaa
     2281 aaagatacaa agaaaaatta aattaatata aagccccatt ttacaaagtc ttttaaaaga
     2341 ctttgaagct ttttgtcttt ttttaaaaag ttttttcata aatttttcct tttgtgaaag
     2401 cgattgataa gataaacgct aaacatattg atgattaaag tgatgacaaa aagcaccaaa
     2461 cctaaagaaa aagcacttaa agccaaagaa ctatcaaaag cttgatctcc acttaaagct
     2521 tctacgattt ttaccgttac cgttgtcata tcttctaaaa aatttaaagt taaatttgga
     2581 cgcaaagaag ctgccatcac cactatcata gtttcgccta aggctcttga aagtcctaaa
     2641 agacaagctg caactatacc aggaatagcc tcaggtaaaa tcacggcaaa aaccacttct
     2701 ttttttgtca tacctaaagc ataagcgcca ttaatccttt tctcgcttac tgcttcaata
     2761 caatcttgag ataaagaagc cactataggt actatcatga tccccatgat aaaacctgca
     2821 cctaaagcac tttgaaagct tgcttgtatg ccaaataaag aaaaaaacca cactataaaa
     2881 ggcgctacaa ctatagccgc aaaaaatcca aaaacaacag taggaatccc tgcaatgatt
     2941 tctaaaatag gttttaagta atttttagat tttttgccag caaaaacacc taaatatata
     3001 gcacacataa cccctaaagg taaagccgtt agcatagcaa tcaatgaaat ataaaaagtt
     3061 ccccaaaaaa gcgatagcgc cccaaaaaca ccttgtttac tcgtgccatc tgcattcata
     3121 aaagctgcat cagctgccca ctgacttgag aataaaaagg taacaacgct ttctttttga
     3181 aagaatttta aagcttcaat taaaattgta agcatgatag caaaacttac tatcacgctt
     3241 acaaaagcac ataaaaaaag tgcaaatttg attatttttt cttttaacaa agtttttcct
     3301 taaaaaactt ttccagcttt tacaagctca tcatttaaaa tttttctatc ttctacgtgt
     3361 ttttgagaag cttttaattt atcatcactt aaaggaacaa gtcctatttt ttcaagctct
     3421 ccaccacttt ttgccaaatc atcactcata taaatttttg caaaatcaaa ggcttcttta
     3481 ggatttttct ttgcattgat atagataaat aaacttcttg caagatcgta ttttccatca
     3541 gcaatatttt tttcatctgc ttttacacca tcaatatctg ctgcattgat tttatccaca
     3601 ttgcttacta aaaatccata accaaaaagc ccaaaagcat ctttatcgat agtaagtttt
     3661 gaaacgatta gattatcatt ttcaccactt ggaatataag ctccatcttg acgtatggtt
     3721 ttatactcgc ctttgtattc aggaattttt ttagaaatat cactcattac aagttcttct
     3781 acagtatctc ttgtgcctga gcttgatgga ggaccataaa cgctgatttt acgattaggt
     3841 aaatttttat tgatttgatt ccagtttgta taaggatttg gtataagttt tccattttgt
     3901 ggaatttctt ttgctaatgc taagaaaagt tctttttttg tgatatttaa tggagcattg
     3961 gttttatttt gcgctaaaac tataccatca taacctacca taatccctac tatatcagta
     4021 actcccgctt ttttgcaagt ttcaaattcg ctaaatttca tcgctcttga agcattagaa
     4081 atgtcagtta tgccctcgca aaatacttta aatccacccc ctgttcctaa actctctaca
     4141 ataggagttt ttgtattgtg aatcgctgca tactcttcag ctacaaaaga agtaaaagga
     4201 tacacagtcg atgaacctgc gatttttaaa tctgctgcat ttaaagcacc acaaagtgca
     4261 agacttgcca cacttaaaga tagaattttt ttcatttttt ctccttaact ttaaaaaagc
     4321 aatggaagtt taaaaaaact tggaaacatt ttggaaacat tttttatttt gtatttttct
     4381 taaatataat ttttaactat caaaaaattt agcttgtttt taaaaaaata atatatcatt
     4441 ataaaacatt ttaaatttta ataaggagat aagaatgctt tctaaagaag ttgtaaaatt
     4501 actcaatgaa caaataaaca aagaaatgta tgcagcaaac ttatatctta gtatgagttc
     4561 ttggtgctat gaaaacagtc ttgatggagc tggagccttc ttgtttgcac atgcaagcga
     4621 agaaagcgat catgctaaaa agcttatcac ttatcttaat gaaacagatt ctcatgtaga
     4681 gcttcaagaa gtaaaacagc ctgaacaaaa tttcaaatct ttacttgatg tttttgaaaa
     4741 aacctatgaa catgagcaat ttatcacaaa atcaatcaat actttagttg aacacatgct
     4801 aacacataaa gactattcta cttttaattt cttacaatgg tatgtaagcg aacaacacga
     4861 agaagaagca cttttccgcg gtatagttga caagattaag ttaatcggag aacacggaaa
     4921 tggactttat ttagctgatc aatacatcaa aaatattgca ttaagtagaa aaaaataatc
     4981 tttgccctat tatgggcaaa tctcgctttg gattgaaggt atgacttatt tttctctaga
     5041 atttagtatt ttaatgatag ctttttttgc tatttattgg acttttaaaa ataattataa
     5101 aatacaaaat attttaattt taattttctc ttatattatt tatattttaa tcaatcctta
     5161 tttcgccttg gttttattta tatatacctt ttttatacac tattttgcct tgctaatttt
     5221 tgtgcgtcgc aagcgttata ttttcgctac ttgtatagct tttattattt taaatttatg
     5281 tttttttaaa tactttccta gcatcaaagg aagtgttgat gagatattaa attttttcgg
     5341 tttagaattt ttaaatattg atttagtatt accaatagga attagttttt atacctttac
     5401 ttctatcact tatcttgtgg aagtttatca aaaacgccgt ttagaaagtt ttttaaattt
     5461 agcaaccttc ttatcatttt ttccaacact actttcaggg cctattatgc gaagttcttt
     5521 tttctttgaa caggcctatc aaaaacgcga atttaaacat gcaaatttaa tcatcatctt
     5581 gcttgttttt ggtatagtta aaaaagtttt aatagccaat taccttggaa tttatgctaa
     5641 aagtatttta gactttccac aatcttataa tttcatacaa cttttaagcg caatttacgc
     5701 ctatgcgatt caaatatact gcgattttag cggatatgtt gatttagttt gtgcttttgc
     5761 tttaatgtta ggttttaccc ttccatctaa ctttaacatg ccttatcttg caaaaaacct
     5821 aaaagatttt tgggctagat ggcatatcag tctttcaacc tttataagag attatatcta
     5881 tataccttta gggggcaata gaaaaggaat gccacgcact atagttaaca tactcatcgc
     5941 ttttatactt tcaggtatgt ggcatggcaa tacacttgct tttattgttt ggggtttatt
     6001 gcatggtatt ggcatagttt ttatacattt gctagcttta agcaaattta gtttacaaaa
     6061 aattccagct ttaggaagat ttttaacctt tcaatttgta tgttttactt ggattttctt
     6121 ttactatagc aaaaatctag aagatgcaat agaatatttt aaagcttgtt attataattt
     6181 cttccaaatt ccatcttata acgatatcta tatgttggtt gcttttgggg ttctttttat
     6241 gatctatcct ttatttatta attttaaaga atattgcatt aagattttaa atcttactcc
     6301 atttttacta aaacctttta tcatagcttt tattttactt ttggtttttg cttttatgcc
     6361 agatggaatt cctgatttta tttattcgag tttttagatg agtgtggtta gatttttctt
     6421 tattttgatt atagtgcttg gcttggttgt tgtagttatg aatcagagca ttagctctta
     6481 tatagaacaa aaatatcact ttgcattcta tcctcataat gatcttttaa aagaagccaa
     6541 tggcttcaaa attaaattag aacaaattcg tgcaatttta agcaacgaac ccttgcctca
     6601 aaccaatgaa gaaactacaa atcaagaaaa taaatcaata gatgaaaact taagtaaaat
     6661 agataaagtt ctaaacactt tagaaaatga tgaaaacact tctcataaag aaacaaatcc
     6721 aaccttaatc cgagatgcaa atattagttt tatcgacaat accaaattag aactacaaaa
     6781 tggagatgag tttttattta tcggagattc tttaatgcaa ggtgttgcaa tagccttaaa
     6841 tagagattta agaaatttaa atcttaaggt aaccgatctt agcaaacaaa atacaggcct
     6901 ttcttataaa tcctattttg attggtcaaa agcaaccaat gaagctttta ttaaaaactc
     6961 aaatattaaa tatcttgttg ttcttcttgg cgctaatgat ccttgggata ttaaaaaagg
     7021 aggaaattac catcgttttg gctccccttc ttggatagat atttacacaa gtcgtgtaga
     7081 tgaaatcatt aaaatcgcta aaaaacataa agccaaagtt ttttggtttg aaatccctcc
     7141 tgtaaaaaaa gaagatttga acaaaaaaat acaagtgctc aataaaattt acagcgatga
     7201 aattcttaaa aataaagaaa tttttatcaa cactaagcta ttttttagtg tcaatgatga
     7261 gtactcagct tatataaaag atgaaaacaa tagaagtata aaagtaagaa cagatgatgg
     7321 ggttcatttt actccaagtg gcgcaagaga aatgtctaaa cttttattag aacacataaa
     7381 acttaaggaa gaaaatgcta gtaaataaat ttaaaattat cttattgttt tttattattt
     7441 ttactagctc ttatgcacaa aatttaaata caaatgacac aatagattcc atactcaatc
     7501 aaaacaaaaa tcactctgct ttaacaagtt atgtattaaa aaaagatctt aaaaatctag
     7561 aaaaaaaatt agaaaaaaat caaaacatag gaattagaat ttatggagat tctcatatgg
     7621 cggctgattt ctttccgcgt gtcataagag gatatttaat ccgctctaac tctataggtt
     7681 ttgcctatcc tttacagccc aaatatcaac aaaatcttaa tcttgtttat tcttataaaa
     7741 actttgaaat tttaaactca agaaatcctg ctaatgctgg acataatttt ccattaggtg
     7801 ggataatagc caaagcaaaa atcaaaggcg caaaaatcaa ccttgataca accttagata
     7861 aaaaaaaatt caagatagga tttttattta aagccaaaca aaataccaat gcttttagca
     7921 tcaaagatgc aaaaaaccaa agctatgagt taagaactac acaaattaac aaatggtctt
     7981 ataaagaact agaacttgat cttcctttgc aaatttcagc cttacaaaaa gatgctgagc
     8041 taggaggata tttcatcaca aataaagata ataatgtttt cttagatacc attgcaatca
     8101 atggtgccaa aagtgattta tggctctctt ggaatcaaga agttgtaaaa aaagaactag
     8161 gacttttaca caatgattta attattcttg cctatggttc taatgatgca ctctttaaag
     8221 ggtttgaaaa acaaaaattc aaaaataatt taaaaaaatg gattagtatt ttaaaaactt
     8281 acaataaaaa cgctgttatc atgctaatct ctccaccaac tgtagttcaa aaacaaggta
     8341 aaaactacaa gcttgctcct gattttttta ccatacgcaa agcattatat gaagttgcta
     8401 aagaagaaaa aactcttatt tttgatatgc atcagtttat gcaagatagt gggggaaaaa
     8461 acaaatggat agaacaaaag ctttcgctca atgatgtaca tcttactata aaaggctatg
     8521 agctgatggc taaaaagtta ctcgaggatt taaaaaatat cattgattat taaatttaat
     8581 acttaggaaa ttctaagttt tcatcattaa aacttaaagc tgtgatttga tagtaagaat
     8641 taatggtttt taaaagatta aatctagctc ttaaaaattc ttgctgggta gaatttaaag
     8701 tattgtttgc atccaaataa tcttttaatt cactttttcc taaaatatat ttttcataat
     8761 acgccttagt gataagctct tgtttaatgt taatattttg caaattttgc aaaagcaagg
     8821 tgtcgctttg ataatcttta taattcaatg caaattcatt catcgcactt tgcaaggctt
     8881 gctcataaga aattaaaagt tgctcataag taaattgtga aattttgata ttttgcttta
     8941 ctctaccata atctaagaaa ggtaaagaaa tcttaacatt gccacttaaa atttcaaatt
     9001 taaaactatc atcgattttt ttatcacttc cgcttaatgc tccacctaaa gaaatactag
     9061 gcaaaataga tttttgcatg gaagaataat ccttaaaggc tgattttaag ctattgagtt
     9121 tagatctcac atctgcacgg tacgctaaag cttttaaagg tatattaaaa tcaggactta
     9181 aggttttaaa atcatttaaa gataaagttt taaaatactc tatataagca aaaccttctt
     9241 gccttgccaa taaatcttgt aaatttttta tgagtaaatt acgattttga tcattgctta
     9301 ataaattttg tttagctctt aataagcttt gttctatgtt taaaagatct aattcttcta
     9361 tttttccaag cttgtattta tagttataaa gctctttcat ttgttctaaa tttgaaagat
     9421 aagctcgaag caatttatct acatcgttaa aataagccag ctcaaacaca tcatttaaag
     9481 ctgtattgat catacttatt tttaaatttt caagatcata agcacttgct tttgcactaa
     9541 attcactcgc acttgcacta tctcttaatt tgccataaat atcaagctca tagcttaaat
     9601 ttaaagaatt attgaaattt ttactttgtt tgcctgaatt taaatcttta tccgcaccaa
     9661 aacccaaatt tccacttaaa gtcggatata aatcataatc aatcaaatca gctctagcca
     9721 aagccgaaag caaagttttt ctagcaatat taatatcact attattcaat aaaacaaaat
     9781 ttagaaattc atttaatttt gcattatcat aagatctata ccaatcataa gtaagattta
     9841 aatctttcat ttgttcttga gttaaatcaa cttctttagg caagctaagt tttacaccac
     9901 aagcgctcaa gaaaaatgct aaaaaaatgc taagtattat tttcatttta ttcctttgat
     9961 aatgcactaa taggatttaa atttgctgca tttcttgcag ggaaaaaacc aaaaaccaca
    10021 ccgataaaca tagaacttaa aagtcccaaa agcacagaat aggcatttaa aatcatagga
    10081 aaatccgtac ttaaagtatt aaaagcaaaa ataacaaaaa tcgataaaat cacacctaaa
    10141 atcgccccta tagtacaaat cataaccgct tcgattaaaa actgcatcat aatatcttct
    10201 cttctagccc ctatagccat gcgtatgcct atttctcttg ttctttcact tacagaaaca
    10261 agcatgatat tcatcactcc tataccccca acaatcaaag caatcacagc cacacaagcg
    10321 gtaagtatgg ttgtagtgcg tttatttgct gtaatagctt gcttaaaagt gtcagaatta
    10381 aaagtaaaaa aatccttttg tccgcgttta atttctaaaa ttcttataat agcattttca
    10441 gccaaagttg aactcacatc atctttaacc ttaactatga tttcacgcaa atttctatct
    10501 cctgtaagct tattcatcag tgttgtatag ggtatataaa aacgtactac attatcttct
    10561 ataggcttgt ctgtatcttt ttgcaaaact cctataatct taaaaggttg agaattaaaa
    10621 agcaccacac gacctaaaat attttcactt ttttcatcag gaaaaagatt ttttttagca
    10681 ttaaaatcca atacagcaac attggtacta ttttttacat catcattatt taaaattctt
    10741 cccgcatcta tccttaaacc ttctatagca aaattattta cccctactcc ttcagctctt
    10801 gcgcttaaag aaatattggt ataagttgcc actcctgaag tatttgaatg agcatcaact
    10861 gcttctaaat attctaaaga tcttaatgtt tctaaatcac taaaattaag ccttgtttta
    10921 cccgaacgca aatccccaaa tccttttcca gggcgaattt caatagtatt tgtcccaagt
    10981 cttgcaatag actcaagcac tttagcttga gagcctaatc ctaaagctac aacacaaact
    11041 acagaagcaa tacctatgat gattccaagc atagttaaaa tagaacgaag tttgtgtgca
    11101 agtatggaag aataagctat cttaaaacat tcaaaggctt gatttttaag caaagtaagt
    11161 gtttttttct ctttgggcat tgtttttaaa ataagttttt cttgagcttt ttccttttta
    11221 gtatcgctta aaatttctcc atctttaatc tctataaccc ttttagcttg tgctgcaatt
    11281 tttggatcgt gagttactaa gactatagta tgaccttgct cgttaagttt ttgtaaaatt
    11341 tcaagcacca taataccgct tttactatcc aaagctcccg ttggctcatc agccaaaata
    11401 agctctccgc cattgattaa agctcttgct atagaaacgc gttgttgctg ccctccgctt
    11461 aattcgtttg gcttagaatc taacttgtga gctaattcta aatcatttaa gagtttttta
    11521 gcattttgac ttctttcttg taaatttttt cccgcataaa ctgcaggtaa agaaacattt
    11581 tctttagcac tcagcaagct taaaagattg tatctttgaa atataaagcc tattttttca
    11641 cgccttaatc ttgctttttc atcattatta agtttagtga cttcatactc atcaaaaaca
    11701 taagttccac tacttggtgt atctaatgtt cctatgatat tcaaaagtga agttttacca
    11761 cttccacttt gtcctataat agcaacaaat tcaccttttt ctatacttaa acttacattt
    11821 tttaaaatgg cattttcgcc tatatttttg caaatatttt taagaaaaat cattaaaatc
    11881 tcaacttcat tttaggagct aaaccatcag cacttgagct tactatcaat tcttcatctt
    11941 catttacacc ttctaaaatt tgagtattga tagaatcttt aatgccaagt ttgacatatt
    12001 ttttaacagc tttttgattt tccaaaattt caacataata gccttttgga tcgcttttaa
    12061 ttgcataagt tggcactgct aaaacagcct ttgcacttgc tacgacaatt tcattttgta
    12121 tactcatacc aatacgcaaa aaatcatctt tattggctac ataaaatttt gcgtaataat
    12181 aaatagcatt tgatgagctt gagcttgaag aactcgaact tgatgagctt gagcttgtac
    12241 tagaatcact cacttcagta tcagctggat ctatacttgc aatcttagca tgataagttt
    12301 tttgaggatc attaagcaaa gaaaaatcaa gctctgttcc tacttttatc ttactcacat
    12361 cagcctctgc tatttccatt cttacttcca tttcgtctaa attagctata cgaactatag
    12421 taggagtgtt ttgattagca ttaactgttt gtccttcatc tacagctaca ttaatcacaa
    12481 caccatccat aggagcagta atggttgtat aacctaaatc tttttgtgca tttttaagag
    12541 tgatttcaag ctgaactact tgagcattaa gctctgcaac attggctttt aaagtataat
    12601 aattattttt ttgagtttct aaattttcaa gagaacttgc tttagctgca taaagttttt
    12661 gctctctttg atattgctta ttcgcaatct caagggcaac ttttttactc tctaaattag
    12721 ccttagcact ttcaagctga gcttttgtaa tatctaaatc gttttgttgt ttatctttat
    12781 caatttgagc gatcaaatca ccttgcttta catgagttcc cacatcaaca taaagtttta
    12841 taatttgtcc actaacttga gcacccacat cgacttgatc tttggcatat acctttccta
    12901 ctgcctctat ggtttgagat atatcttttt tttgtatttt ttgagttaaa tagctgattt
    12961 tttcatcatt attaaaaaaa ataaaataag ccccaacact tccaagtat
//
LOCUS       DAPOLW010000041        12609 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.041, whole genome shotgun sequence.
ACCESSION   DAPOLW010000041 DAPOLW010000000
VERSION     DAPOLW010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12609)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12609)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12609
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.041"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            95..880
                     /locus_tag="ROE18_000815"
     CDS             95..880
                     /locus_tag="ROE18_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDX3651006.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNFINF"
     gene            953..3778
                     /gene="uvrA"
                     /locus_tag="ROE18_000816"
     CDS             953..3778
                     /gene="uvrA"
                     /locus_tag="ROE18_000816"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HDX3651007.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHRCGQKISSMSVSDIVSEILKFPKGAKIIIYAPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKIPFMQLNEVQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCGGHRLKPESLAVKVAKKSLGEILDMSIEDSTAFFADEKNFSYLSEQQKL
                     ISKPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCGGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVE
                     KVAKEHKKTRSYTGYYLDLELKNTQKS"
     gene            3783..4226
                     /locus_tag="ROE18_000817"
     CDS             3783..4226
                     /locus_tag="ROE18_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDX3651008.1"
                     /translation="MFDFLYNDISYLGLFMVCFLSSTLLPLASEAFVLGFIKLDFNPN
                     LVFIVATLGNTLGSLSTYALAYFGKEKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSRYTFIIFIANSF"
     gene            complement(4182..5189)
                     /locus_tag="ROE18_000818"
     CDS             complement(4182..5189)
                     /locus_tag="ROE18_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HDX3651009.1"
                     /translation="MRLILDTDIGNAIAGANTDDGLALALILSSKEIKLEMLSTVCGN
                     VPSLVAYSVAKDLFQRLNLNIPVYLGANEALKEPSKAWRQRLDESVKNFKLEYLWENI
                     KSPEILENINPDAIFKMGELVSKNPKEISICAIGPLTNIAMTMKIFKDFDINLKELFI
                     MGGSFDMPYYTKDTNFGFDPEAASIVLNSRAKITLIPYNATMQTLLTHEDLKELQGKN
                     ILCDFIVETLGVWIDYASKTRGTKGTWIHDALTIACALDSSIADFDECYADVICDSSL
                     ARGMSWRCFREPKMSMGVDLSTKNCVKILKNVDNARLLKLIKERLLKGVCYENYESIT
                     T"
     gene            complement(5186..6547)
                     /locus_tag="ROE18_000819"
     CDS             complement(5186..6547)
                     /locus_tag="ROE18_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HDX3651010.1"
                     /translation="MTNQQIDGIADKNFNTPEGRKVFKKAVFSCWLGTAMEYADFALY
                     GLAAATIFSEVFFPEQTPVIALLLSFVTYGIGFIARPIGALFFGHLGDKHGRKNVMMA
                     TIALMGISTTLIGFIPSYAVIGVWAPICLVALRFMQGFGAGAELSGGTVMLGEYAPSK
                     RRGLVSSVIALGSNSGTLLASFVWLLMVQMDEASFKEWGWRVPFMGSILIALFAVYIR
                     FHVKETPVFEKQKNEMMKLRLNNEKHMKKDERSFWQRSRAFWTMVGLRIGENGPSYLA
                     QGFIVGYVTKILLLDKSVATTAVMIASLVGFLVIPLAGYLSDKFGRCITYRMFCLLLM
                     IYAFPAFMLLDSKNEIIVILTIIVGMSLASLGIFGVQAAWGVELFGVKNRYTKMAFAK
                     ELGSILSGGTAPMVASALLAYYGSWWPIATYFVLTAGIGFVTTFFAPETRGRDLNKIE
                     DAI"
     gene            6711..9350
                     /gene="polA"
                     /locus_tag="ROE18_000820"
     CDS             6711..9350
                     /gene="polA"
                     /locus_tag="ROE18_000820"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HDX3651011.1"
                     /translation="MKTLTIVDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYSL
                     KNEYKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISV
                     SQEGYEADDIIASFVKTCENRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAA
                     CLEKYGVKPNQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRNLLLEGKENAFLSKKLASLYDNLEVQNLIEKATYPDEEPLLKILEILEHYELN
                     TLLKKLRQNPDNKDKNLGFKATLVQDENKLFEILNTLDKESIIAFDTETTGLDTKEAK
                     IVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAIEVIFNHFVIGHNLKYDFKII
                     QNNFDLNLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDT
                     NALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQMGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKL
                     LNAFANDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEANLAK
                     SYIEKYFENFTSIKKYFEKVKNEAKQNGFIVTLSGRKRYFDFENAKPMQIAMYERESI
                     NSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIME
                     NIVKLKVKLKTSSSIAKNWGDLK"
     gene            9366..10142
                     /gene="motA"
                     /locus_tag="ROE18_000821"
     CDS             9366..10142
                     /gene="motA"
                     /locus_tag="ROE18_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HDX3651012.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVVHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLIEFAIIARRDGLLALESRTSE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGKKLKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPRISQFDKG"
     gene            10145..10888
                     /gene="motB"
                     /locus_tag="ROE18_000822"
     CDS             10145..10888
                     /gene="motB"
                     /locus_tag="ROE18_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HDX3651013.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQTLENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKAP"
     gene            complement(10894..11982)
                     /gene="flhB"
                     /locus_tag="ROE18_000823"
     CDS             complement(10894..11982)
                     /gene="flhB"
                     /locus_tag="ROE18_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HDX3651014.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMMSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTGKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGN"
     gene            complement(12101..>12609)
                     /locus_tag="ROE18_000824"
     CDS             complement(12101..>12609)
                     /locus_tag="ROE18_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HDX3651015.1"
                     /translation="IGPKGAVVFFYPKDFTFVCPSEIIAFDKRYQEFKNRGIEVIGIS
                     GDNEFSHFAWKNTPVNQGGIGQVKFPLVADLTKQIARNFDVLYAEAVALRGSFLLDAD
                     GTVRHAVVNDLPLGRNIDEMLRMVDTMLFTNEHGEVCPAGWNKGDEGMKANPKGVAEY
                     LGKNEAKL"
BASE COUNT         4556 a         2084 c         1998 g         3971 t
ORIGIN      
        1 tattctattg ttataaaaaa actaagataa tacttagctt aataagataa aattattccg
       61 tatttgaaat atttaatatt ttttaggaaa agctatggaa atcacagatt taccttatct
      121 aatcatagga atcatttcag gtattgcttc tggacttttt ggcattggtg gaggtatgat
      181 tatcgttcct tctatgttcg cacttggagc aagtgctcac catgctatcg gaatttcagt
      241 attgcaaatg atttttgcag cagtttttgg ctcttatatt aattataaga aaaaaaatct
      301 aaatcttaaa gatggtatta tgataggttt tggagggctc ataggagcaa gctttagcgg
      361 aatgctttta aaagctttaa gtgatgtagc tcttactagc gtatttttgg cggtaagttg
      421 tatatttttt atcaaatatg cttttggaat taaagaaaac attgtgcaaa atcaaagaag
      481 cgtttgggta aagaatgtca ttttatttat tgctggagct tttactggta tttttgctat
      541 ttctttggga attggtggcg gacttttaat tgctccgatt ttagcttatt ttttaggcta
      601 tgatagtaaa aaagttgttt ccttatcctt gttttttgtt atttttgctt cagtctctgg
      661 tattatatct ttttcaaatt ctggagttat agactctgaa gttattcata aaggaatact
      721 agtaggtata gcttctatgg ttggagtttt tataggaatt aaaatcatag aaaaaatgca
      781 tatttcagct catagaaaaa ttttactttg cgtatatgcc ttatcaatac ttggaaccac
      841 ccactctttg cttaataagc taaattttat aaatttttaa cttggattta tccaagttct
      901 tttaatatta ttatgctaaa atcttaaatt tatttaatgt ttaggaaaga ctatgaacga
      961 taccataaaa atcattggcg caagagaaaa taacctaaaa aatatccacc ttgaaattcc
     1021 caaaaacaaa ctcattgttt ttacaggact gagcggaagt ggaaaatcaa cccttgcttt
     1081 tggaactctt tatgctgaag gacaacgccg ttatatagaa agtttaagtg cttacgccag
     1141 acaattttta gataaggtag gcaaacctga tgtcgataaa atcgaaggtt taactccagc
     1201 cattgccata gatcaaaaaa ctacttctaa aaatccacgc tctactgtag gaaccatcac
     1261 tgaaatttat gattatctaa gacttttata cgcaagagtt ggcattcaac attgtcatcg
     1321 atgtggacaa aaaatttcat ctatgagtgt aagtgatata gtcagtgaaa ttttaaaatt
     1381 tccaaaaggt gcaaaaatca tcatctacgc cccactcata cgagaaaaaa aaggaactta
     1441 tgcagatttg cttgaaaatt tacgcaacaa aggctatgta agagctcaaa ttgatggagt
     1501 tttggtaaga cttgatgaag aaattgaact agccaaaacc aaaaaacaca ccattaaact
     1561 tgtcatagat agacttgaaa ttcaagaaga tttactttct cgtcttgcaa gcgatataga
     1621 aaaaggttta caggaaagct ttggagaaat agaaatagaa gttttaaatc atgaggaaat
     1681 aaaccttaat aaacactatc attttagcga gcattcagct tgttttgatt gtaaaatttc
     1741 ctttgttcca cttgagcctt taagcttttc ttttaattct ccaaaaggag catgtgaagc
     1801 ttgcgatgga cttggaattc gttatacttt agatatgaaa aaaatcatcg atgaaaattt
     1861 aagtctcgaa aacggtgctg ttaaaatcat gtatggtttt aataaaagtt attattataa
     1921 attcctaatc gccttttgcg aacaaaatga aattcctatc aaaatacctt ttatgcaatt
     1981 aaacgaagta caaaaacgtc ttgtattgta tggtaatgcc aaaactatag aatttctttg
     2041 gaaaagaaat cgcctaaaac gcacttttga aggcgtggtt aaaatggctt atgaaatgct
     2101 aaaagatgaa aaagatttag ccgaatatat gagtgaaaaa atttgtaaag actgcggtgg
     2161 gcatcgttta aaacctgaaa gtttagccgt gaaagtagca aaaaaaagct tgggtgaaat
     2221 tttagatatg agcatagaag atagtacggc cttttttgca gatgagaaaa atttttctta
     2281 tttaagcgag caacaaaaac ttatttctaa acctatccta aaagaaatca acgaaagatt
     2341 gtttttcttg tatgatgtgg ggctaggtta tctttcttta gggcgcgatg caagaacgat
     2401 tagtgggggt gaagcacaaa gaatccgcat agcttcacaa attggcagtg gtttaagcgg
     2461 agtgatgtat gtcttagatg agcctagcat aggacttcat gaaagagata ctgcaaaact
     2521 gattaaaact ttaagaaatt tacaacaaaa gggcaatacc ctaattgtcg tagagcatga
     2581 taaaatgacc atagaagaag cagattttat tgtagatatt ggtccaaaag caggaaaatt
     2641 tgggggtgag gttgtattta gtggaactta taaagaactt ttaaaaagca aaagcgaaac
     2701 tgcactttat atgaatggta aaaaacaaat ttcacaactt caaaacagaa cacagaaaga
     2761 atggcttgag cttaaaaatg taaatattaa caatatccaa gatttaagcg taaaatttcc
     2821 tttgcaaaat ttagtcgcta taacaggagt ttcaggttct ggaaaaagct ctttgatact
     2881 tcaaacccta cttccttttg cacaagagga attaaaccgt gcgaaaaaag ttaaaaaact
     2941 tggcggagta caaatagaag gacttgaaaa acttgataaa gtcatttatc ttgatcaaag
     3001 cccaattggg cgcacaccac gttcaaatcc tgccacctat acaggtgcta tggatgaaat
     3061 cagaaatctt tttgccgcca ctaaagaagc caaaatgcgt ggttataaag ccggacgctt
     3121 ttcttttaat gtcaagggtg gaagatgtga gaaatgtagc ggagatggag aaatcaaaat
     3181 agaaatgcat tttttacctg atgttatggt agtttgtgat acttgcgggg gcaaacgcta
     3241 caatgatgcc acgctagaaa tcaaatataa aggcaaaaat atcagtgaaa ttttaaatat
     3301 gagtgtttta gaagcgagtg aattttttac agccgttcct aaaatcaaac aaaaattaga
     3361 tactctagta aaagtgggtt tagattatct aactctagga caaaatgcca ccaccttaag
     3421 tggaggtgaa gcacaaagaa tcaaacttgc taaagaacta agccgtagcg atacaggaaa
     3481 aacgctttat atacttgatg aacctacaac aggactgcat tttgaagatg tcaataaact
     3541 catcttagtt ttacaacatt tggttgatct taaaaattct gtttttgtga tagaacataa
     3601 tttagatgtg attaaaaatg ctgattatat catcgatatg gggcctgaag gcggagttaa
     3661 aggtggaaaa gttataagca caggaagcgt ggaaaaagtc gctaaagaac acaaaaaaac
     3721 ccgttcttac acaggatatt atctagactt agagcttaaa aatacacaaa aatcataatt
     3781 ttatgtttga ttttttatat aatgatatta gctatttggg gcttttcatg gtgtgttttc
     3841 tttcaagcac actattaccc ttagcaagtg aagcctttgt tttaggcttt ataaaacttg
     3901 attttaatcc gaatttggta tttatcgtag ccactttggg taatacctta ggaagtttaa
     3961 gtacttatgc tttagcgtat tttggaaaag aaaaaatttt agaaaaatac tttagcaaat
     4021 ccttgaaaaa attagaaaat ttcaatgcta attttgctaa atttggaagt atatttgctt
     4081 tttttacttt tttaccttta gtgggagatc tttttgcctt gggacttggt tttgcgaaat
     4141 attctttttt aaaaactata ttttttatct tacttggaaa attaagtcgt tatactttca
     4201 taattttcat agcaaactcc ttttaaaagc ctctctttta taagttttaa aagccttgca
     4261 ttatctacat tttttaaaat tttaacacaa tttttagtgc ttaaatccac ccccatactc
     4321 atttttggtt ctctaaaaca acgccaactc atacctcttg ccaaagaact atcgcaaata
     4381 acatcagcat aacactcatc aaaatctgca atactagaat ctaatgcgca agctatcgtt
     4441 aaagcatcat gtatccaagt tccctttgta ccacgtgttt tagaggcata atcaatccaa
     4501 acacctaaag tttcaacgat aaaatcacat aaaatattct taccttgcaa ctcttttaaa
     4561 tcctcgtgtg ttaataaagt ctgcatggtt gcattataag gtatgagtgt aattttagct
     4621 cttgaattta gcactatact agccgcctca ggatcaaaac caaaatttgt atctttagtg
     4681 taataaggca tatcaaaact gccgcccata ataaaaagct ctttaagatt tatatcaaaa
     4741 tctttaaaaa ttttcatagt catagcgata tttgtcaaag gtcctatcgc acaaatagaa
     4801 atttctttag gatttttact caccaactca cccattttaa aaatcgcatc aggatttata
     4861 ttttctaaaa tttcaggact ttttatattt tcccaaagat attcaagttt aaaattttta
     4921 acactttcat caagtctttg acgccaagct ttacttggtt cttttagggc ttcattcgct
     4981 cccaaataaa cggggatatt taaatttaaa cgttgaaata aatccttagc cacactatag
     5041 gcaacaaggc ttggaacatt accgcaaact gtgcttagca tttcaagttt gatttcttta
     5101 gatgacaaaa tcaaagcaag tgctaaacca tcatcagtat ttgctcctgc aatagcattg
     5161 cctatgtccg tgtctaagat aagtctcata tcgcatcttc tattttattt aaatctctac
     5221 ctctagtttc tggcgcaaaa aatgtagtca caaaacctat acctgcagtt aatacaaaat
     5281 atgtcgcgat aggccaccaa gagccataat atgcaagcaa agcagaagcc accataggcg
     5341 ctgttcctcc tgaaagaata gaacctagct ccttagcaaa agccattttt gtataacggt
     5401 tttttacccc aaaaagctcc acaccccaag ccgcttgcac accaaaaatc cctaaagatg
     5461 ctaaagacat acctacaata atagttaaaa tcacaataat ttcattttta ctatctaaaa
     5521 gcataaaagc aggaaaagca taaatcatta aaagcaaaca aaacattcta taagtaatac
     5581 atcttccaaa tttatcactt aaataacccg ccaaaggaat aactaaaaac cctaccaatg
     5641 aagctatcat taccgctgta gtagctactg atttgtctaa aagtaaaatt ttagtcacat
     5701 aacctacaat aaaaccttgc gcaagataag aaggtccatt ttcgcctatt cttaagccca
     5761 ccatagtcca aaaagcacga cttctttgcc aaaaacttct ttcatctttt ttcatatgct
     5821 tttcgttatt aagacgcaat ttcatcattt catttttttg cttttcaaaa acaggggttt
     5881 ctttgacatg aaaacgaata tatacagcaa aaagagcgat taaaatactt cccataaaag
     5941 gaactctcca gccccattct ttaaaacttg cttcatccat ttgtaccatc aaaagccata
     6001 caaaagacgc aagcaaagtt ccactatttg atcctaaagc aatcacagaa gaaacaagcc
     6061 ctcttctctt gctaggagca tattctccta gcataactgt tccacctgaa agttcagctc
     6121 ctgcgccaaa accctgcata aaacgtaatg caaccaaaca aataggcgcc caaacaccaa
     6181 tcactgcata acttgggata aaacctatca gagtagttga aattcccatt aaagctattg
     6241 tagccatcat aacatttttt cttccgtgtt tatcacctaa atgaccaaaa aacaaagccc
     6301 caataggtct tgcaataaaa cctatgccat aagttacaaa actaagcaaa agtgcaatta
     6361 ctggagtttg ctcaggaaaa aatacttctg aaaaaattgt tgcagctgct aaaccataaa
     6421 gtgcaaaatc tgcatattcc atagcagttc ccaaccagca agaaaaaact gcctttttaa
     6481 aaacttttct accttcaggt gtgttaaaat tcttatctgc aattccatca atttgctgat
     6541 ttgtcattac attttcctta cattattcat ataaaatttt tactctactc gatattatga
     6601 ctaaaaattg aagtattttc gcttaaatat ctttaaattt cgagacattt taagcaaaat
     6661 tttgaaataa tataaccaaa aaatatattt tatcaaaaga agaaattatt atgaaaactt
     6721 taactattgt tgatactttt ggattttttt tcagacttta ctacgcatta aaaggtttta
     6781 aaaattcaca aggacaagct agtggaatga ttagcggttt tgcaaatttt atttatagct
     6841 taaaaaatga atataaaagt gattatattg tttttgcatt agattccaaa ggaaaaactt
     6901 ttcgtagcga aattgatcca aactataaac aaaatcgcac tccaccgcca cctgaacttc
     6961 tagaacaaat tccaatttgc ataaagatga tagaaaaaat gggtttcata agcgtttctc
     7021 aagaaggtta tgaagctgat gatatcattg cttcttttgt aaaaacttgt gaaaatagag
     7081 atatttttgt acgtattatc actcaagata aagatcttta tcaactcata aaagatggta
     7141 aaacaagcat ttacagtcct atttctaaaa acgactatga tgaagcagcg tgtttagaaa
     7201 aatacggagt aaaacctaat caaatcagag attttttagc tctttgtggg gatagttctg
     7261 ataatattcc aggcgttaaa ggtataggtg caaaaggagc taaaaccttg cttgatgagt
     7321 ttggtagcat agagggaatt tatgaaaatt taaccctagt acgtaacgaa agaagtcgta
     7381 acttgctttt agagggtaag gaaaatgcat ttttaagcaa aaaattagct tctttgtatg
     7441 acaatttaga agtacaaaat ctcatagaaa aagccactta tcctgatgaa gaacctcttt
     7501 taaaaatact tgaaatttta gaacattacg aacttaatac tttgcttaaa aaactgcgtc
     7561 aaaatcctga taataaagat aaaaatttag gttttaaagc cactttagta caagatgaaa
     7621 acaaactttt tgaaatttta aatacccttg ataaagaaag tattattgct tttgataccg
     7681 aaaccacagg acttgatact aaagaagcaa aaattgttgg ttttagtttt tgcatgaatg
     7741 aaaatgaagc cttttacgtg cctttaactc ataattatct tggagtaggt gagcaaatct
     7801 cattgcaaag tgccaaaaaa gctatagaag taatctttaa tcattttgtt atagggcaca
     7861 atctcaaata tgattttaaa atcattcaaa acaattttga cttaaattta cctcaaaaat
     7921 acgcagatac aatgattttg gcatggctta aaaatccttc tttaagagta aatatggatg
     7981 atttagcctt aagacttttt aattacgaaa ccttgcattt tgaaagcctt gttaaaaaag
     8041 gagaaaattt tgcaagtgta gaacttgaaa aagcttgtaa atacgctgca gaagatgctt
     8101 atatcacttt aagattttat ctttattttt taaaaaatct tgaaactcct ttattagaac
     8161 ttgctaaaaa ctgcgaattt gatttcatta aaatcattat gatgatggaa gaaaatggca
     8221 taaagcttga tacaaatgca cttgaaatcc ttatgaaaaa atttgaaaat gaaatcaaaa
     8281 atttaagtga agaaatttat actctttgcg aggatagatt taatctaaat tcacctaaac
     8341 aaatgggtga tatacttttt gaaaaactca aactcccaag cggaaaaaaa ggaaaaacag
     8401 gatattctac cgatgaaaaa gttttaaata tacttttaga taaacatcct gtaattgcta
     8461 aaattttaga ttatagagaa cttgccaaac tttattccac ttattgcgaa cctttgttaa
     8521 aactagcgtt aaaagataaa aattcacgca tttattcaag ttttttacaa actggaaccg
     8581 ctacaggacg tctttcatct aaggatccaa atttgcaaaa catccctgca cacggacaat
     8641 atgcaaaaga ttataaatct tgctttgtag ctaaagatgg atttagtttt atctctcttg
     8701 attattctca aatcgaactt agaatacttg cacattttag cgaagatgaa aaacttttaa
     8761 atgcttttgc caatgatgaa gatatacacg caagaacagc aataatgatt tttggtgaaa
     8821 gcaattatga aaccagaagt gttgcaaaaa gtataaattt tggacttatt tatggtatgg
     8881 gttataaaac cttaagtcaa aatttaaaaa tagaagctaa tttagccaaa tcttacatag
     8941 aaaaatattt tgaaaatttt actagcatta agaaatattt tgaaaaagtt aaaaacgaag
     9001 ctaaacaaaa tggttttatt gttactttaa gcggtcgcaa gcgttatttt gattttgaaa
     9061 acgcaaaacc tatgcaaatt gccatgtatg aaagagaaag cattaattca atcttgcaag
     9121 gctcagcagc agatgtaatc aagcttgcaa tgctagaaat caataaagaa ttaaatgaag
     9181 ataaaaagct tattttacaa attcatgatg aattaatttt tgaagtaaaa gacgatttgt
     9241 gtgaaaattt tgtaaaaaaa actagagata ttatggaaaa tatagtaaaa ttaaaagtaa
     9301 aattaaaaac aagttcaagt atcgccaaaa attggggcga tttaaaataa tcaaggagat
     9361 aattaatgga tctttcaacc atattaggaa tggtgcttgc agttactagt atttcggtag
     9421 gagatatact agagggaggc aatcctttgc atgttgtgca tctttcttcc tttctcatag
     9481 ttatgccaac agctgcattt tgcgcaatga cttctacgca taaaaaaatt gtaaaagcag
     9541 cctacaaaga actcaaagtt gtttttaaag gttctggagt aaatttaccc gaaaggatag
     9601 cccagttaat agaatttgct attattgcaa gacgagatgg tcttttagcg ttagaatcaa
     9661 gaaccagtga gattgaaaat gaatttttaa aaaatgctat gatgatgctt gtagatggta
     9721 aaagctttga agaaattcac gaaagcatgg aaatacaaac cgaacaactt gaagagcatt
     9781 ataaagaatg cgcagaatat tggatagtat ttggagaaac ttgccctacc atggggcttg
     9841 ttggagcggt ttttggtctt attctagctc ttaaattgct agacaatcct caagcaatgg
     9901 cagcgggtat ttcaggtgct ttcacagcta cagttacggg aatttttggc gcttatgcac
     9961 tttttgctcc ttgggggaaa aaattaaaag ctaatggaat ggatcttgta aaagagcaaa
    10021 ttgttattac tgaagctata aaaggaattg cagaaggtgc taatcctaga gatttagaag
    10081 ctaaactttt taacttctta agtcacgatg atccaagaat ttcacaattt gacaaaggtt
    10141 aaaaatggct aaaaaacata aatgcccaga atgtccagca ggtgaaaaat gggctgtgcc
    10201 ttatgcagac tttctaagtt tgcttttggc actttttatt gctctttggg caatttctaa
    10261 aacaaaccct gctaaagtag aggctttaaa aactgaattt gttaaaatct ttgattacac
    10321 ctctactcaa acagtcaaag aagagagtaa aacccaagaa aaatataaag gcgcagcaaa
    10381 agaagaaagc gatgaactca aatcgttaaa acaaatgact atgacacagc aagaaactat
    10441 caaacgtctt caagcagctc tagatcaaag cgataatcag gttgctctta accttccatc
    10501 taaagttgaa tttgaaagag gtagtgctca aatcgtttca gctgatatac aagattattt
    10561 aaaacgtatg gctgagctaa caacatattt gccacctcaa gcaaaaatag aaattagagg
    10621 ctatacagac aatagcgact ctattataag aagttatgaa ctcgcctacc aaagagcgga
    10681 aaatgtatta aaatatttta tagaaggtgg agcaaatttg aaaaatatta gcattaaaag
    10741 ctacgggctt aataatccta tcaatggaaa tccacaaact ctagaaaata atagagtaga
    10801 aatatatttt aaagtcgata cagcagatac aagtactcaa aaatcggttc ttgagcttat
    10861 taacaaaata ggaactaaag caccttaaaa gttttagttt ccttttttta cttgaccagc
    10921 taaacgactc ttattatttg tattataaac aaatcctagc acctcagcta cagctttaaa
    10981 catttcccta ggaataagat cattaacatc acaagcttta taaagctctc ttgctaaagg
    11041 aggattttca taaactacaa cattattttc ataggctact tgttttatgc gaagagcgag
    11101 aaaatccact cctttggcaa caaccctagg ggcttgttct ttacctgtat cataacgaat
    11161 agctacggca taatgcgttg ggtttgtgat caccacatcc gcacctgcaa catcttgaac
    11221 catacgacga cgcgcagctt ccatttgaag tctacgaatt ctacctttaa cctgaggatc
    11281 tccttccatt tgtttatact catcttttat ttcttgtttg ctcatacgca aacctttaaa
    11341 atactgaaaa cgcaccaaaa aaacatctaa aacagcaata attaaaaaag caactataac
    11401 aatagctgct aaaacaatag ctctgtctct tagccaagta agctgtgcaa ccatagtata
    11461 aagctcaact cttggaagct cttgcataaa tttaagtaaa actataaaag ctatagtaaa
    11521 aacaataccc acttttaaaa taatttttat actttcaaca atttttttca atgaaaaaag
    11581 gttttttaaa ccttttagag gattgatttt tcctaaattt ggcataatag gtttagttgt
    11641 aaaaataaaa ccaaattgca taatatttcc caaaacccca gcaatcataa tacttaaaac
    11701 aataggtgca agaataatta aaacctcaaa aatgctttta atcataatgg cttgaataat
    11761 acgcaaatca aattcaacac caataaaact ttgatagtat ctatataaat ttacaattct
    11821 ctcgcccata aaactcatca taaataaagt tatagttact ccaattatca aagttacaat
    11881 agctgccgca tcttgagact ttggaacatt accttcttta cgcgcatctt ctatcttttt
    11941 ggacgtgggt tcttctgttt tttcttgatc ttcgcctgcc atattttagc ctaaataaaa
    12001 attttaatat gtgtgtaaaa ttatagtaga aaatttatga atttcaatta aagaataaaa
    12061 atgaagaaaa agcctcgtaa agaggcttta tactaagaaa ttaaagttta gcttcgtttt
    12121 tgccaagata ttcagccacg cctttagggt tagctttcat accttcatcg cccttattcc
    12181 atcctgcagg acaaacttca ccatgctcat ttgtaaaaag catagtatca accattctta
    12241 acatttcatc tatatttcta cctagtggta aatcattaac cacagcatgg cgaactgttc
    12301 catcagcatc aagcaagaac gaaccacgaa gggcaactgc ttctgcataa agtacatcaa
    12361 aatttctagc aatctgctta gttaaatcag caacaagtgg gaatttaacc tgaccaatac
    12421 caccttgatt tactggagta tttttccaag caaaatgtga aaattcatta tctcctgaaa
    12481 ttccaattac ttcaataccg cggtttttaa attcttgata tcttttgtca aaagctataa
    12541 tttctgaagg acaaacaaaa gtaaaatctt ttggataaaa gaatactacc gctccttttg
    12601 gacctatgt
//
LOCUS       DAPOLW010000042        12381 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.042, whole genome shotgun sequence.
ACCESSION   DAPOLW010000042 DAPOLW010000000
VERSION     DAPOLW010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12381
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.042"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            42..389
                     /locus_tag="ROE18_000825"
     CDS             42..389
                     /locus_tag="ROE18_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDX3651016.1"
                     /translation="MTKENSPCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMSK
                     WGKKDKKGKKCLN"
     gene            377..826
                     /locus_tag="ROE18_000826"
     CDS             377..826
                     /locus_tag="ROE18_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HDX3651017.1"
                     /translation="MLELIGELSLQNYMGEWLEIARKPAFFQKSCLNSKAKYELKYKN
                     GIPYVEIENFCSKKNEISSIKGKAKIVSNRQLAVRFNIFMNLFNKVNYEIIFVDSEYK
                     VAIVGSPDKKYLWILARNIIDEKNIKELLNIAKQRGFDISDVVFDKY"
     gene            complement(828..1904)
                     /locus_tag="ROE18_000827"
     CDS             complement(828..1904)
                     /locus_tag="ROE18_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HDX3651018.1"
                     /translation="MQYKILENNRIASKGYAMLSKDAKFTPFEFSRHAIGDNDILIKI
                     LYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNS
                     CGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAVCVPKDA
                     PMEKVAPLLCAGITTYSPLKFSNIKEGSSVAVAGFGGLGMMAVKYAVKMGAKVSVFAR
                     NENKKADALAMGVSSFYTSCDKNAVKERFDLIISTIPTPYNPAIYLDLLKFGGEMAIV
                     GLPPHEVAPSISVITFVHKAGKKVYGSLIGGIAETQEMLDFSLKHGIYPETELITPQE
                     IDKAYENLTSGKAKFRYVIDMTKE"
     gene            complement(2132..5227)
                     /locus_tag="ROE18_000828"
     CDS             complement(2132..5227)
                     /locus_tag="ROE18_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HDX3651019.1"
                     /translation="MSKAKTSEFDLEQFVISSLLEHGWCYEKPVRATDEVLLETSLVN
                     ALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADI
                     INLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATIN
                     SAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNK
                     SLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNK
                     AISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITDRNDLD
                     DQLFGTFASCANLLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPENDNVFECLS
                     LRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGF
                     TGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGKRLVNE
                     LDEKLENQDSQKAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVSISRS
                     VAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMR
                     NIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVV
                     DYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQMLPNDYEKYFELD
                     TGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAI
                     KARFLKFAKENENENLLNQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLL
                     EVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEA
                     LDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKLLALVSEILQ
                     IIKNNVSIDWMIKENVRARLRVAVKRVLNKYGYPPDMQQLAIDGVLAQAEILAKELAN
                     E"
     gene            complement(5230..6996)
                     /locus_tag="ROE18_000829"
     CDS             complement(5230..6996)
                     /locus_tag="ROE18_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDX3651020.1"
                     /translation="MNKYKFVKFQVKNFRSLLDITLNIDNNNINTICGENNIGKTNFL
                     RALNLFFNHNNGVEYNQNEDRPYHIQKGSTGGRKTELIGYFTKNNVTHILKVEFHKDK
                     IVYILNGKMVEWKVARDIVESFKLLFIEASNVNMPSVISAILENDALLALDNKRKKQS
                     EPLRTLKLFIEQSKKAIEDIEKDINIYLKQMLDFDNTLKDKEIKIRFAEFEKLRDVVK
                     TMTSVTLDDGNDHLMDHKGSGAQRIVLLSLMQYITDKITTDIIWAIDEPEAFLQPKLQ
                     KKIMEIFKNIVREKKQPIIMTTHSQYFVDFNNLVNTHLFKLTKEEKIYARKKGRVFQE
                     INTKPIYIGTAFEKLSVIKKHLGIETNDNWDIMPYNILVEGEEDKKYLQMLIEILNLS
                     MPNIIHSGGATKIAGFLEYFNNQCSYTSFKPYFICIFDNDEEGRKQYNKISKDNLYPN
                     IKLDAKKLKRYGESIQENNRDIWEIEDFMPIKIIVDAVNIILKYKQYNTITNSQISDR
                     KKLAFKNMSILDYLEKCIADRNEEKERFILNTESRKKEICQNAFRAREKYTKNDLEDY
                     HVDFMNELIDSFNKVDLIKKDN"
     gene            complement(7007..8149)
                     /locus_tag="ROE18_000830"
     CDS             complement(7007..8149)
                     /locus_tag="ROE18_000830"
                     /inference="COORDINATES: protein motif:HMM:NF013579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDX3651021.1"
                     /translation="MNNWKKCKLGDIAEITMGQSPKSEFYNFDNIGMPFLQGNRTFGR
                     KYPYFDTYCTEYKKIAKKGEILFSVRAPVGDINFANNDICIGRGLCSMNAKNGENEFL
                     YYLLHNLRSVIINNESGSVFGSVNKNDLQTIEILLPLLEEQRQIATILSSIDDKIELL
                     HEQNKTLEELAQTLFLNWFKDREFNSTISDFISMQNGFAFKSKDFIDYGNNGVIKIKN
                     ISNGIVDIVNTDKISQNTINEVNNKFNINSGDILFAMTGAEIGKMGIVPSTNKKLWLN
                     QRVGMVKERFLGARFLAYIHLTSEFGYDYVINSATGSAQENISATDIENCPFVKLTSE
                     EIVSYSKQLNDFFEKIIFNLGEIQTLENMRDILIPKLLNGEIKITN"
     gene            complement(8368..9834)
                     /locus_tag="ROE18_000831"
     CDS             complement(8368..9834)
                     /locus_tag="ROE18_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDX3651022.1"
                     /translation="MIRTVMDFKFVLRLLEANQFENEVVEYKKNNKDFIVLGKNISAL
                     SNTAALLGIDKAYIIFGIEDGTLNIVGTNFKPKQEKKGNEELESWLHKVLKPNIEFKI
                     HEITEKEIRLVVFEIEATKISPIKFEEKAYIRIGSNRKELDKYPEKEKKLWQVLSGFS
                     FENEIAKSNLNIQDIYDLLDYSKCFDMLDISYDNYSSDEYIIEKLIEHGLVKNLNDSF
                     AITNLGAILFAKDLTKFKGLNRKRIRFIRYQGKNKIHTLEELEGRKGYAIGFQGLISY
                     IMQYVPKNEVIENAIRKDTTLYPEIAIRELVANAIIHQDFTINGRNPMIEMYSDRIEI
                     TNNGKSLIDIKRLIDMPSKSRNDKLANLMRIMGICEERGSGVDKVIDSVEAYQLPAPD
                     FINNEDYFQAILFSHMPLEDMTKQDRIRATYQHCCLKWASREAMTNASLRARFKIGDK
                     QHSKASKIISDTLEAGLIKQQDPENKSTKHVKYVPFFV"
     gene            complement(9831..11333)
                     /locus_tag="ROE18_000832"
     CDS             complement(9831..11333)
                     /locus_tag="ROE18_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HDX3651023.1"
                     /translation="MAKKKEIKLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISD
                     SFMQKYEELLKEQDDGADPEDADEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEA
                     MDEIEKHNDTLKGVLPKVYAKDNLDSKCLGELIDLIGNIAFDTGKSTDVLGHVFEYFL
                     GEFALAEGKQGGQFYTPKCVVELLVTMLEPYKGRVFDPCCGSGGMFVQSEEFVKSHQG
                     RLDDISIYGQESNQTTYKLAKMNLAIRKIESSQVIWNNEGSFLNDAHKDLKADFIIAN
                     PPFNDSDWSGELLENDGRWKYGVPPASNANYAWIQHFLYHLSPNGGVAGFVLAKGALT
                     SNTTNEAAIRKALIEDDLIDCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKTLFID
                     ARDLGTRINRRNKTLNKDDINQIANIYKAWKNGTDYEDIKGFCKSVSIDEIRELSYVL
                     TPGRYVGLADSDDEFDFDTRFNELLAKLKSQIKTEQELSEIILKNLEKIK"
     gene            11388..11691
                     /locus_tag="ROE18_000833"
                     /pseudo
     CDS             11388..11691
                     /locus_tag="ROE18_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809523.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
     gene            complement(11703..12338)
                     /locus_tag="ROE18_000834"
     CDS             complement(11703..12338)
                     /locus_tag="ROE18_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDX3651024.1"
                     /translation="MKIAILCASGKVGKEISKEALKRNLEPVCFVRNSSKMNEFLPQA
                     KIVQRDLFELDSKDLIDFDIIIDAFGEWENLSLHKKHIECLSVILQGSKAKLFVVGGA
                     GSLYMDENHTTRLMDMPDFPKEYLDIAKASAEVLEFLRNEKGFKWVYVSPSAIFSPDL
                     PKSNHYKIIGEKFEVNANNESKISYSDYASAMIDIVLNSCYENTRIGVISL"
BASE COUNT         3813 a         2264 c         1629 g         4675 t
ORIGIN      
        1 tacagaaaat aaagtaatat actatactaa aggaatgtta aatgactaaa gagaattctc
       61 cgtgcaattt cgaagaatgt ggatttaact atactctagc attaattaat ggaaaatata
      121 aaatgagtat tttatactgc ttgtttcgct atgaaatcgt gcgttataat gaactcaaac
      181 gctttttaag ctccatatct tttaaaactt taaccaatac cttaagagaa ctagaaaacg
      241 atggtttaat tatcagaaaa gaatacgctc aaattccacc caaggtagaa tatagcttat
      301 ccaaacgtgg acaaagttta attcccattt tacaagctat gagcaaatgg ggcaagaaag
      361 acaaaaaagg gaaaaaatgc ttgaattaat tggcgaactt tctttgcaaa attatatggg
      421 agaatggctt gaaatagcta gaaaaccggc cttttttcaa aaatcttgcc taaattcaaa
      481 ggcaaaatac gagcttaaat acaaaaatgg cattccttat gtagaaattg agaatttttg
      541 cagtaaaaaa aatgaaattt caagtataaa gggtaaggca aaaatcgttt caaataggca
      601 attagcagtg agatttaaca tctttatgaa cctttttaat aaagtaaatt atgaaatcat
      661 ttttgttgat agcgagtata aagttgccat tgtgggtagt cctgataaaa aatatctttg
      721 gattttagca agaaatataa tagatgaaaa aaatataaaa gagcttttaa acatcgctaa
      781 gcaaagggga tttgacatta gcgatgtggt ttttgataag tattaaatta ttcttttgtc
      841 atatcaatga catagcgaaa tttagccttt cctgaggtta gattttcata agctttatcg
      901 atttcttgtg gggtaataag ctcggtttct ggataaattc cgtgttttaa agaaaaatca
      961 agcatttctt gagtttcagc aataccacca attaacgagc cataaacctt tttacctgcc
     1021 ttatgtacaa aggttatcac gctgatactt ggagcaactt cgtgaggtgg caaacccact
     1081 atcgccattt caccgccaaa tttaagcaaa tccaaataaa tagcaggatt ataaggcgtt
     1141 ggaatggttg agatgattaa atcaaaacgt tcttttacag cgtttttatc gcagcttgtg
     1201 taaaatgagc ttacacccat agccaaagca tcggcttttt tgttttcatt tctagcaaaa
     1261 acgctaacct ttgcacccat tttcacagca tatttaaccg ccatcatacc aagtccgcca
     1321 aatcccgcta ctgctacgct tgagccttct ttgatatttg aaaatttaag cggagaataa
     1381 gtggtaattc ctgcacaaag caaaggcgcg actttttcca tcggtgcatc ttttggcaca
     1441 caaacggcaa atttttcact tacaactatg ttgtttgagt agcccccata agtgttttca
     1501 ttgccatgaa atacatcaca actattgtaa gtaaagatgg ttttgccatt ttcgcaaaac
     1561 tgctcttgtg agcgtttgca agcatcgcac tcaccgcatg aatttaccat acaaccaacc
     1621 cctgcgtaat ctcctacttt aaatttactc acatttttac ccacagcgat aacttctcct
     1681 gctatctcat gcccaggcac gcaaggataa gtagcttctc cccactcgct tcttgcggtg
     1741 tgaatatcgc tatgacaaat gcctgcatat aggattttaa tcaaaatatc attatcgcca
     1801 atagcatggc ggctaaattc aaagggtgta aatttcgcat ccttgctaag cattgcatag
     1861 cctttacttg cgatgcgatt gttttctaaa attttgtatt gcatttttgc tccttttttg
     1921 attttttata attataaaac attagagtag ctataagtca agagtgaaaa taatttttta
     1981 aaaattagta taaatactgg atactagtga aattgtataa aattaagcaa attttataac
     2041 aaagacatag ttgcaacgac aaatcaagct atctataata aagataaaag aaaataatac
     2101 aaacaaattt aatttcagta tcgcttaaat tctactcgtt agctaattcc ttagccaaaa
     2161 tttcagcttg agctaaaact ccatcaattg caagttgttg catatcaggt ggataaccat
     2221 acttatttaa cactcttttt acagctactc ttaatcttgc tcttacattt tcttttatca
     2281 tccagtctat acttacattg tttttgataa tttgcagtat ttcactaacg agtgctaata
     2341 gtttttcatt gcctaaaatc ttttcatact catcattaca agcaagtgct gagtaaaagg
     2401 cgtattcata gtcttttaaa cctaacttct tagcctcatc ttccatactt actatgcttt
     2461 tactcatatt tattagctca tctagtgcct cgcttgatga gattagctta ttgttatatt
     2521 ttttgatagc atcactaagc atttgtgcta attttttagc ctttgttagg cttagctttt
     2581 ctcttgcttt tatctcatca tttagtatct tttttagcat ttcaaaggct aaatttttac
     2641 gcttcatatt ctttacttct agtaaaaact catcagaaag tatagatata tcaggctttt
     2701 ttataccact agcatcaaaa atatccacca ctttagatga tacaatagct ttatctacta
     2761 cttgctttat caaagcttga ttaagcaaat tttcattctc attttcttta gcaaacttta
     2821 aaaacctagc ctttatcgca tacataaaag cgattttatt ctttatgctc aaagcttttt
     2881 cgtgtggcat agctatcgtg taggctttat caagtgctgc aaattctttt ataaatctgt
     2941 tcttaccatc ttcatttgat aatatatgct cttctacatc aagtatatat tcaagtttag
     3001 cccccgtatc aagttcaaag tatttttcat agtcatttgg cagcatttgt tctacgattt
     3061 caagcttttc tatcatcact tttacagcgt cttcttgagt agtgattata tcgcccttgc
     3121 caccactttc actataaaat gataaagctt ttttcaaatc acttgcaatc ccaagataat
     3181 ccaccacaag cccactaggt ttatccttat aaaccctatt tactctagct atagcttgca
     3241 ttagattatg ccctttcata ggcttatcta tataaagagt atgaagcgat ggcacatcaa
     3301 agccagttag ccacatatcc accactataa ctagttttaa ttcatcgtct atatttctca
     3361 tacgatttgc caaaaactgc ttttgaatct tacttgtatg atgtttacta aactctaccc
     3421 catcgctaga gcttgaagtc atcactactt ttatagcccc gctacttagc tcatcgctat
     3481 gccaacttgg tcttattttt atgatttcat catatagttt tatagctacg cttcggctta
     3541 tacttactat catacctttt ccgccgagct tactagacct tgtttcaaag tgttttacta
     3601 tatctttagc gatttgtttt agtctgcttg tgctacctac taaagcttct agcttagtag
     3661 cttttgcttt ttggctatct tggttttcaa gcttttcatc taattcattt acaagccttt
     3721 ttccttcttc gcttagctct attttggcaa gtctgctttc ataatatata ctcacagtag
     3781 caccatcttc aacagctctt gatatatcat atatatctat gtagtttcca aaaactgcag
     3841 gggtgtttat atcatggctt tcaattggcg ttcctgtaaa tcctatataa gtagcatttg
     3901 gcaaagcatc acgcagatat tttgcgaaac cataaactat cttttgccct agcacatcgc
     3961 cactttttga cttttcttct actacttttg catcaaagcc gtattgggtt ctgtgtgctt
     4021 catctgcaat tacgatgata ttatctctaa gcgataagca ctcaaataca ttatcatttt
     4081 ctggactaaa tttttgaata gtagtaaata ccactccacc actagctacc cttaaaagct
     4141 cttttaaatg ctctttatcg tttgcttgtt ttggctcttg tcttaaaagg ttcgcacaac
     4201 ttgcaaaagt accaaaaagc tgatcatcta gatcatttct atccgtgata agcaaaatcg
     4261 taggattatt taaagccttt atcgctttag cactataaaa caccatagac aaagacttcc
     4321 cactaccttg cgtatgccac accacgccac cttttttatc tccgtctttg ctacttgctg
     4381 tgattgttct actaatggct ttatttactg cgtagtattg atgatagcaa gcgatttttt
     4441 tggtagtttt tatacttaaa ataccattta aatctcttat ttgctctttt tcaaaaacta
     4501 tgaaattgca aatgatatct agcaaggttt ttggatttag cataccatct attaaggttt
     4561 taatttctaa agacttgttt ggagcgtagt ttatcccatc gctacttttc cacgccataa
     4621 accttgaaaa atcagccgaa atactccccg ccctagcaaa atacccatcg cttatcacac
     4681 aaaaagcatt atatgtaaaa atacttggga ttgtttgttt ataagtgttt atttgattat
     4741 aagctgagtt tatcgtggcg ttttcatcgc ttgggctttt tagctccatt aaaacaagcg
     4801 gaattccatt tatatatagc actacatcgg ggattttgtt ttctttagct tctgtgatgc
     4861 ttagctggtt tgttgctata aattcattgt tgcttgcatt attaaaatca attagattta
     4921 tgatatcagc tctgctttcg ccgtcttttg tagtgtttat atttacccca tttacaagct
     4981 tataatgaaa gttttcattg ctatctaaaa ggctaagatg atttttgctt tttagctcct
     5041 tataaatttc attagctttt gataaatcaa gctgtggatt tagcctacaa agtgcattta
     5101 caaggctagt ttctagcaaa acttcatcag tggctcttac aggcttttca tagcaccacc
     5161 catgctcaag tagtgatgat ataacaaact gctctaaatc aaactcacta gtcttcgcct
     5221 tgctcatttt tagttatcct tttttatcaa atctactttg ttaaagctat caataagttc
     5281 attcataaaa tcaacatgat aatcttctaa atcatttttt gtatattttt cacgagccct
     5341 aaatgcgttt tggcaaattt ctttttttct tgattcagtg tttaatataa atctttcttt
     5401 ctcttcattt ctatcagcaa tacatttttc taaataatcc aaaattgaca tatttttaaa
     5461 tgctagtttt tttctatcac ttatctgaga gtttgttatc gtattgtatt gtttatactt
     5521 aagtataata ttaactgcat ctactattat ttttataggc atgaaatctt caatctccca
     5581 aatatctcta ttattttctt gtatcgattc tccatatctt tttaattttt ttgcatctag
     5641 ctttatgttt ggatataaat tatcttttga tattttattg tattgttttc taccttcttc
     5701 atcgttatca aaaatacata taaaatatgg tttaaaagaa gtataactgc actgattatt
     5761 aaaatattct aaaaaacctg ctattttagt tgcaccacca gaatgtatta tatttggcat
     5821 agataaattt aaaatttcta ttagcatttg caaatatttc ttatcttctt ctccttcaac
     5881 taaaatatta taaggcataa tatcccaatt atcattggtt tctataccta aatgtttttt
     5941 aataacagat aacttttcaa acgcagtgcc tatataaatc ggttttgtgt taatttcttg
     6001 aaatactcta cctttttttc tagcataaat cttttcttct tttgtcaatt taaacaaatg
     6061 agtattgact aaattattaa aatctacaaa gtattgagaa tgtgttgtca taattatagg
     6121 ctgctttttc tctcttacaa tatttttaaa tatttccata atcttttttt gtaattttgg
     6181 ctgcaaaaat gcttctggtt catcaattgc ccatattata tctgttgtaa ttttatctgt
     6241 aatatattgc attaaagata aaagtactat tctttgagca ccactccctt tatgatccat
     6301 taagtggtca tttccatcgt ctaaagtaac agatgtcata gtttttacaa catctcttaa
     6361 tttttcaaat tcggcaaatc taatttttat ttccttgtct tttaaggtgt tatcaaaatc
     6421 taacatttgt tttaaatata tattaatatc cttttctata tcttctatag ctttctttga
     6481 ttgttctatg aataatttca atgttcttaa aggctcactt tgcttttttc gtttattatc
     6541 taaggctaac aaagcatcgt tttctaaaat agcagaaatt acgctaggca tattcacatt
     6601 acttgcttct ataaataaaa gtttaaaact ttctacaata tctctagcaa ctttccattc
     6661 aaccatcttt ccatttaata tatacacaat cttatcttta tgaaattcaa cttttaaaat
     6721 atgtgtgaca ttattttttg taaaatagcc tattaattct gtttttctac caccagttga
     6781 tcccttttga atatgatatg gtctatcttc attttgatta tactccacac cattattatg
     6841 attaaaaaat aaatttaagg ctctcaaaaa attagtcttt ccaatattat tttcaccgca
     6901 aattgtattt atattattat tgtctatatt taaagtaata tccaataaag aacgaaagtt
     6961 tttaacctga aattttacaa acttatattt attcacacat tctcctttag ttagttattt
     7021 ttatttctcc atttaggagt tttgggataa gtatatcacg catattttct agggtttgaa
     7081 tttctcctag attaaatata attttttcaa aaaaatcatt taattgttta gaataactca
     7141 caatctcttc actcgtaagc ttaacaaatg gacaattttc aatatctgtc gcacttatat
     7201 tttcttgagc actgccagta gctgaattga taacatagtc ataaccaaat tcagaagtta
     7261 aatgtatata tgctaaaaac ctagctccta aaaacctttc ttttaccatt cctactcgct
     7321 gatttaacca taatttttta tttgtacttg gaacgatacc cattttacct atctcagcac
     7381 cagtcattgc aaataaaata tctccagaat ttatattaaa tttgttatta acttcattta
     7441 tagtattttg gcttatctta tcagtattta caatatctac aattccattt gaaatatttt
     7501 ttatctttat tactccattg ttaccataat ctataaaatc tttactctta aaagcaaaac
     7561 cattttgcat agatataaaa tcactaatag tgctattaaa ttctctatct ttaaaccaat
     7621 ttaaaaaaag agtttgggcg agttcttcta gggttttgtt ttgctcgtgt agtagttcta
     7681 tcttgtcatc aatactactt aagatagtag caatttgcct ttgctcttct aatagcggta
     7741 ataaaatttc tattgtttgt aaatcatttt tatttaccga gccaaaaaca ctaccagact
     7801 cattatttat aataacactt cttaagttgt gtaataagta atataaaaat tcattttcac
     7861 cattttttgc attcatggag cataagcccc taccgataca aatatcattg tttgcgaaat
     7921 taatatctcc gacaggagct ctcacactaa ataaaatctc acccttttta gctatttttt
     7981 tatattcagt gcaatatgta tcaaaataag gatatttcct accaaaagtc ctattgcctt
     8041 gtaaaaatgg catacctata ttatcaaaat tataaaattc tgattttgga gattgcccca
     8101 ttgttatctc tgcaatatcc ccaagcttac attttttcca attattcata tcttaatccc
     8161 ttggaattta tttgcgtaaa aaatccaaaa aatacacgaa ataaattcga gaatttaaat
     8221 tcggaatttc ctttgtttaa gcttggttta aaagataatg acgaaagcat gacagaagaa
     8281 aaaacgctaa aagctcgtat tttaaagcta tgtgatatat aatttaagct atttttaaat
     8341 aattttgacg aaagcatgac ataaaaccta aacaaaaaat ggaacatatt taacatgttt
     8401 tgtagattta ttttctggat cttgctgctt aatcaaacct gcctctaaag tatcgctaat
     8461 tatttttgaa gcttttgaat gttgcttatc acctatttta aatctagctc ttaagctagc
     8521 atttgtcatg gcttctcttg aagcccattt taaacaacaa tgttgatatg tagctcttat
     8581 tctatcttgc ttggtcatat cttctaaggg catatgagaa aataaaattg cctgaaaata
     8641 atcttcatta tttataaaat ctggtgctgg caattgataa gcttcaacgc tatctataac
     8701 cttatccaca ccagaacccc tttcttcaca tatacccatt attctcatta aattagccaa
     8761 cttatcattc cgtgactttg atggcatgtc tattaatcgt ttaatatcta taagagattt
     8821 tccattgttt gttatttcta ttctatcgct atacatttca atcattggat ttctaccatt
     8881 tattgtaaaa tcttgatgaa ttatcgcatt agctacaagt tcccttattg cgatttctgg
     8941 atataaagta gtatcttttc ttatcgcatt ctctatcact tcatttttag gaacatactg
     9001 cattatatat gaaatcaatc cttgaaaacc aatagcatat ccttttctac cttctaattc
     9061 ttctaatgta tgaattttgt ttttaccttg ataccttata aatctaattc tttttctatt
     9121 taagccttta aattttgtta aatcttttgc aaacaagata gcacctaaat tagtaatagc
     9181 aaaagaatca ttcaaatttt taactaaacc atgctcaatt aatttttcaa taatatattc
     9241 atctgaagaa taattatcgt aagatatatc taacatatca aaacacttac tgtaatccaa
     9301 taaatcatat atatcttgaa tatttaaatt tgatttagct atttcatttt caaaagaaaa
     9361 gcctgaaaga acttgccata attttttctc tttttctgga tatttatcca attcttttct
     9421 attactgcct atccttatat aagctttttc ttcaaatttt attggtgaaa tcttagttgc
     9481 ctcaatttca aataccacca acctgatttc tttttccgtt atttcatgaa ttttaaattc
     9541 tatattaggt tttaaaactt tatgcaacca actttcaagc tcttcatttc cctttttttc
     9601 ttgttttggt ttaaaatttg taccgacaat attaagcgta ccatcttcaa tgccaaaaat
     9661 tatatatgct ttatctatac ccagtaaagc agctgtattt gacaaagcag aaatattttt
     9721 tcctaataca ataaaatctt tattattttt cttatattca accacttcat tctcaaattg
     9781 gtttgcttct aacaatctta gtacaaattt aaaatccata accgtcctta tcatttaatc
     9841 ttctctaagt tttttaagat aatttcactt agctcttgct cagttttgat ttgggatttt
     9901 aactttgcta aaagctcgtt aaatctagta tcaaaatcaa actcatcatc actatcagca
     9961 agccccacat aacgccctgg ggtaagcaca taagaaagct ctcttatctc atctatgcta
    10021 acacttttac aaaagccttt tatgtcttca taatcagtgc cgtttttcca tgctttataa
    10081 atatttgcga tttggtttat atcgtctttg tttagggttt tgttgcgtct atttatccta
    10141 gttcctaaat ctcttgcatc tataaaaagc gtttttttga ctgtctttgg tagcttttgg
    10201 cgtcttataa accaaagtga tgcaggaata cctgtattta aaaacagctt tgcgggtaga
    10261 tttactatac aatctatcaa atcatcttca ataagtgctt ttctaatggc tgcttcattt
    10321 gtggtgttgc ttgtaagtgc gcctttagct aggacaaatc ccgctacacc gccgtttggt
    10381 gatagatgat ataaaaagtg ctgtatccaa gcgtagttgg cgttgcttgc tggtgggacg
    10441 ccgtatttcc atctgccatc gttttctaac agttcgccgc tccagtccga gtcgttaaat
    10501 ggtggattgg ctataataaa atcggctttt aagtctttat gagcgtcgtt taaaaatgag
    10561 ccttcgttgt tccatatcac ttgtgagctt tcgatttttc ttatggctag gttcattttg
    10621 gcgagtttgt aggtagtctg atttgactct tgaccataga ttgagatgtc atctagtctg
    10681 ccttggtgag attttacaaa ctcttcgctt tgaacaaaca taccgccact tccacagcaa
    10741 ggatcaaaca ctctgccttt atatggctca agcatagtta ctaggagctc tacgacgcat
    10801 tttggagtgt agaattgtcc gccttgtttg ccttcagcta gggcaaattc acctaaaaaa
    10861 tactcaaata catgacctaa aacatcggtg cttttaccag tgtcaaaggc gatatttcct
    10921 ataagatcta taagttcgcc taggcattta ctatctaagt tatctttggc atagactttt
    10981 ggcaaaactc cttttagagt atcgttgtgt ttttctatct cgtccattgc ttcatctagc
    11041 attttgccta ttttgggatt tttggcgtta tctcttatgt agttgtagcg agatttttct
    11101 ggaacgaaga agatattgtc agctaggtat tcatctgcat cttctgggtc ggctccatca
    11161 tcttgttctt ttaataactc ttcgtatttt tgcataaagc tatcgctaat gtagcgtaaa
    11221 aatataagtc ctaaaactat gtgtttatac tctgctgcgt cgatattttt gcgtaattta
    11281 tcagcacttt tccataacgc atcttctagt tttatttctt ttttctttgc catttttatc
    11341 cttaaataat tttattaagt ataacaaata gtattttaaa agcaaatgat gataaggtgt
    11401 attactacga gcttatacca ccttacaagc ttactaaaaa caagccttta gaatacgcac
    11461 attttaagga atttctaaaa tgctacaaag aaaagaaaaa tcactgctaa ttcttggctg
    11521 cttagcaaaa aagaacttga agaaagaaat tatgatttaa gtgctaaaaa tccaaatgta
    11581 aaagaagaaa aaatcctaag aactagcgaa gagattttaa attctttaga agaaaattta
    11641 aaacttcaaa ataagtattt aaaagaaata aaagatgcct taaaagcata aggcatcttt
    11701 atttataggc ttattacccc aatgcgtgtg ttttcatagc aagaattaag cactatgtct
    11761 atcatagcac tagcataatc actatagctg attttacttt cattgttggc attcacttca
    11821 aatttttcgc ctatgatttt ataatgattg ctttttggaa gatctggtga aaaaatagca
    11881 gatgggctca catataccca tttaaaacct ttttcattgc gtaaaaattc caatacttcc
    11941 gcacttgctt tagctatatc caaatactct ttaggaaaat caggcatatc cataagtctt
    12001 gtagtatgat tctcatccat atacaaactt ccagcacccc ctacaacaaa taatttagcc
    12061 ttacttcctt gtaaaattac actcaagcat tctatatgct ttttatgtaa gcttaaattt
    12121 tcccattctc caaaagcgtc aataataata tcaaaatcta tcagatcttt agaatcaagt
    12181 tcaaaaagat ctctttgtac tattttagct tgaggtaaaa attcattcat tttagagcta
    12241 ttgcgtacaa aacatactgg ctctaaattt ctttttaaag cttctttgct gatttctttg
    12301 cctactttac cgcttgcaca taaaattgct attttcataa tatctccttt ttaagtattt
    12361 ttacataaaa aatgcaatct a
//
LOCUS       DAPOLW010000043        12374 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.043, whole genome shotgun sequence.
ACCESSION   DAPOLW010000043 DAPOLW010000000
VERSION     DAPOLW010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12374
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.043"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..352)
                     /locus_tag="ROE18_000835"
     CDS             complement(<1..352)
                     /locus_tag="ROE18_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651025.1"
                     /translation="MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDTEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     IIHENTKQTSMQFKN"
     gene            complement(349..1614)
                     /locus_tag="ROE18_000836"
     CDS             complement(349..1614)
                     /locus_tag="ROE18_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDX3651026.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLAAYK
                     EGSLELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENTGMKARFSMPFVKKGRLLTSFNKKSF
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKIAKELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKKNIEYFEKKLEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSKIYMASEYFYKFTSLEEILKTKNKFNYSITYHDPCHARKMQGVFKEPRE
                     LLKTNYHFVEMSNSNTCCGFGGVSMQTDYYDRALSVGLKKAQMIDESKASVVSAECSA
                     CRMQISNALEQNSSKVVFASPLELIAKAL"
     gene            complement(1616..2971)
                     /gene="hemN"
                     /locus_tag="ROE18_000837"
     CDS             complement(1616..2971)
                     /gene="hemN"
                     /locus_tag="ROE18_000837"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HDX3651027.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNTNFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILSTILDTKREVVQM
                     HFGGGTPTFFSAKQLQNLILKIRSVFGNFSKDAEISCEIDPRFLNEEQATVLTQNGFN
                     RISFGVQDFDEKVQKEIHRIQPFELTQNALNLVRSKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEKFLSKNG
                     YKMIGMDHFAKENDELFKALENGTLHRNFQGYTTKGGADLVGVGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVALSDDDELRKAVIMELMANFKLDIKSIEKEFCIDFK
                     EYFKEDLKALEEYKDFINFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            complement(2958..3449)
                     /locus_tag="ROE18_000838"
     CDS             complement(2958..3449)
                     /locus_tag="ROE18_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HDX3651028.1"
                     /translation="MKELEKYSTCLKRIDEFSQNLGIKKKDRTIFKMKQSENENEKCL
                     VLENGSFDSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            complement(3446..4366)
                     /gene="argF"
                     /locus_tag="ROE18_000839"
     CDS             complement(3446..4366)
                     /gene="argF"
                     /locus_tag="ROE18_000839"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDX3651029.1"
                     /translation="MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNS
                     WLIAAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGHDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVVKALLCFLDNQRGRE"
     gene            complement(4363..5346)
                     /gene="hemB"
                     /locus_tag="ROE18_000840"
     CDS             complement(4363..5346)
                     /gene="hemB"
                     /locus_tag="ROE18_000840"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HDX3651030.1"
                     /translation="MFKRFRRLRLNENLRSMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQNVVNLGIKAIILFGVLENEKKDSCGSDALDDEGLVARSI
                     REIKKNFPDLFIISDLCFCEYTDHGHCGIIDPKTKSVDNDATLEISAKQALVHARAGV
                     DMVAPSGMMDGVITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPALAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETIIAFKRAGAKLIITYHAKELAKTLKGEK"
     gene            5404..5964
                     /gene="ribA"
                     /locus_tag="ROE18_000841"
     CDS             5404..5964
                     /gene="ribA"
                     /locus_tag="ROE18_000841"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HDX3651031.1"
                     /translation="MEIKISEIANLPSKWGNFQMQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLDSIKEKIITR
                     IPILIEPNRFNVEYLNIKQTQMGHLK"
     gene            5965..6531
                     /gene="rsmG"
                     /locus_tag="ROE18_000842"
     CDS             5965..6531
                     /gene="rsmG"
                     /locus_tag="ROE18_000842"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HDX3651032.1"
                     /translation="MIFKDYDFLQNYDLKNFEEKVKIYKELLSKFNRIHNLTHLKNID
                     ENIFDSIKILDFYDFSKAKNIADMGSGAGFPAVFLAFLLQSNFHLFEPNPKKAAFLRT
                     LKIECELPNLHIYKEKVQEYKHTFKADIITSRALMDVKPLLEICKNLKDENTVFILWK
                     GSEIYQELENIKDYEIFENNLRRYCILK"
     gene            complement(6547..7119)
                     /locus_tag="ROE18_000843"
     CDS             complement(6547..7119)
                     /locus_tag="ROE18_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651033.1"
                     /translation="MKKILASVLSSCLLASALSAVSFKEDSLKVSFEGYKTKDMIGTK
                     GEFKNVEYKFSKNIKDLASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDT
                     DIKVVFQDAIAGENKGVISAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSK
                     ALKALSDVAAGHGGISWPLVDISFNADLAE"
     gene            complement(7210..8307)
                     /locus_tag="ROE18_000844"
     CDS             complement(7210..8307)
                     /locus_tag="ROE18_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HDX3651034.1"
                     /translation="MKTSFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSVQSIKDTTH
                     LAATAFAIIIGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGL
                     KGFLLSAIVIFFVFIIALFVGTKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDP
                     FKGILAVGTVVIFGLVFMFLYPIVFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEM
                     AKDMAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFA
                     FAFLGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKS
                     GSRVFGLAFVLGLVLIFGGYFLTLAFKGILW"
     gene            8420..9301
                     /locus_tag="ROE18_000845"
     CDS             8420..9301
                     /locus_tag="ROE18_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDX3651035.1"
                     /translation="MKIKDMEIFLDLLNTQSPTHTANNFSITQPNVSIVIKNLENKFD
                     GILFERLGKKLLPTPKALELGKNWLKIIQAYYQSLEKLNDESMLLGEIKIASTQSISE
                     HFLAPILFDFKAEFKNIEIRSQTQNSKECLNLLKNGNIEFAIIEAELDPALVEYENLE
                     INFWQDDELIVATSDKKLNEKEFYIDELLEQKWILREVGSGLRDKFLNEIGASSKKLN
                     IFLELDRMAAIKELVLQKKAISIFSKKSIEKELKNSTLYEIKLKNIDLKRKFYTLKRK
                     NYNFNRALEKFEKIFKS"
     gene            9381..11249
                     /gene="rpoD"
                     /locus_tag="ROE18_000846"
     CDS             9381..11249
                     /gene="rpoD"
                     /locus_tag="ROE18_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HDX3651036.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTTKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(11265..11777)
                     /locus_tag="ROE18_000847"
     CDS             complement(11265..11777)
                     /locus_tag="ROE18_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HDX3651037.1"
                     /translation="MKKIYIIRHAKASKSEDIDDFERKLTKSGKEDLKKLFKNLASHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNRICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPSLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(11774..12292)
                     /locus_tag="ROE18_000848"
     CDS             complement(11774..12292)
                     /locus_tag="ROE18_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HDX3651038.1"
                     /translation="MFLIFLIFLNILCYFLISYDYYNILGLNILFFNGAYWQLLSSMF
                     LHGNLTHLILNMIVLFQFGRMLETYLGALCFIFIYFIGGLLCSLLSVFYVYFDFKYFG
                     ENINVIGASGAICVLIGFYAVIDKNSTKGLIVAILLMSFVPLLMGVNVAWYGHIFGFM
                     CGYILAKIKEVK"
BASE COUNT         4616 a         2150 c         1560 g         4048 t
ORIGIN      
        1 aatttttaaa ttgcatactt gtttgttttg tgttttcatg tattattttt tcggatttta
       61 agatgttgtg ttctatatca tcttcttggt tttgattatc tttgtttgat ttcatgtcaa
      121 aatcttcaac gataatcata tcttcagtat cacaaatatt aaaatgtttt acaatttctt
      181 caaaagtaaa actgtcatca ctaaattcca aaagatctac atttgaagtg ataaaatcaa
      241 caccatctcg ttcttcaatc ttatctttaa tcacaaaagc atcaacacaa aagcacgatc
      301 tttgaatttc atattcagaa cttttgcctt taaatactat cttcatcatc acaaagcttt
      361 tgctataagt tctaaaggac tagcaaaaac aaccttgctt gaattttgtt ctaatgcatt
      421 tgaaatttgc attctacaag ctgaacactc ggcacttacc acactagcct tactttcatc
      481 gatcatttgt gcttttttaa gccctacact taaagctcta tcataataat ccgtttgcat
      541 actcaccccg ccaaaaccgc aacaagtatt agaattactc atttctacaa aatgataatt
      601 tgtttttaaa agttctcttg gctctttaaa aaccccttgc atttttcttg catggcaagg
      661 atcgtgataa gtaatgctat aattaaattt attttttgtt tttaaaattt cttccaaaga
      721 agtaaattta taaaaatact cgctagccat atatatctta gatgacacac attttgcgcg
      781 ttttgcccag tctaaatcat tttgcattat aaaaaaatgt tcataatcta tctttaacat
      841 agccgaacaa gtggcctcag gaactataat agcatctaat ttttctaatt ttttttcaaa
      901 atactcaata ttttttttag ccaaaacttc aacactttta aaatcacccg taaaaaattg
      961 cggcgctcca caacacactt gttctttcat caaatccaca ttgattttta attccttagc
     1021 gattttaagc actgcattag ccgtatctat gtaaaaataa ttcgccaaac aacctacaaa
     1081 aaaacctatg gttttttctc catcattatt gataaatttt ggattagaat ttaagaaact
     1141 ttttttatta aaacttgtaa gtaatcttcc ctttttaaca aaaggcatgg aaaatcttgc
     1201 cttcatacct gtattttcat tctcattttg aattttaaac gcacaacttt gaaacacata
     1261 gccaagctta gctaccaaat ctaaaatttt gcgtcttctt aaaaagaaaa aaataagttt
     1321 tttataccaa gctataccaa attttttagc tatatcataa cgaacttctt ctatggcatt
     1381 atctactctt aatttacttg gacatacttc aacacaattg gtgcataaaa aacaagattc
     1441 aaaaactttc ttagcttctt tatcaagttc tagacttccc tctttataag cagctaaaag
     1501 atctaaaaac cctcttggac tagtaatttc atcgcgattt tcttcatgta tagtacaaac
     1561 aggtatacat ttgccacatt taacacaagc atcacttatt tgactaaatt tcatcttaca
     1621 ccgtttttga gaatactttt ttatcttcac taatgttttt catataagca tcaaaacaca
     1681 tagcaatatt tcttataagc aaaacacctg tttcattgac tttgataaaa ttttcatcaa
     1741 aattaataaa atctttgtat tcttctaaag cttttaaatc ctctttaaaa tactccttaa
     1801 aatcaatgca aaattctttt tctattgact taatatcaag cttaaaattt gccattaact
     1861 ccataatcac tgcttttcta agctcatcat catcgcttaa agctacgcct ctttcaaaag
     1921 gcaaaactcc tctatctaat gcagcttcat aacttgacat atctttaaaa ttttgcgcat
     1981 aatgtctttg tccttcgcct atacttgtaa gcccaacacc gactaaatca gcaccgcctt
     2041 tggtagtata accttggaaa tttctatgca aagttccatt ttctaaagct ttaaaaagct
     2101 catcattttc ttttgcaaaa tgatccattc ctatcatttt ataaccattt ttgcttaaaa
     2161 atttctcaca aaattctaaa atttcaagct taacatcagg acttggcaag gtattttcat
     2221 caaattttct catatttttc ttaagccaag gcacatgagc gtaattaaaa atcgccaaac
     2281 gatcagggtt taaaagcata actttttcta aagtttgtgt aaagctttgt aaattttgat
     2341 aaggcaaacc ataaattaaa tccatattta cagactttat gcctttgctt cttacaagat
     2401 ttaaagcatt ttgcgttaat tcaaaaggct ggatgcgatg aatttctttt tgaacttttt
     2461 catcaaaatc ctgcactcca aagctgatac gattaaagcc attttgcgtt aaaactgtgg
     2521 cttgttcctc atttaaaaaa cgcggatcga tctcacagct aatctctgca tctttagaaa
     2581 aatttccaaa aacagatctg atttttaaaa tcaaattttg aagttgttta gcactaaaaa
     2641 aagttggagt tccgccccca aagtgcattt gcaccacttc tcttttagta tctaaaatag
     2701 tacttaaaat atcaagctct ttaaaaatat aagttaaata cctttcttta ctctcttctt
     2761 ttgcagtata gatgacatta caaccacaaa aataacaggc actcctacaa aaaggcaaat
     2821 gaaaataaag cgataaagat ctatcttgct tttttaaaat ttctatatat tcttcgtatt
     2881 tgaaatttgt attaaactct actgctgtag gataagaagt gtagcgtggt cctgctttag
     2941 agtattttac aaaagcttta taatctctca ttttggttta ccctttctat catcgcttgc
     3001 atatctacaa ataaatttgg atgctcttgt ttgattttag aaattaattt ttcaagatca
     3061 atactaactt ccatggtgcc attttgcgcc ttttgcttga tctcatccat agcaaccgtc
     3121 caaacatcgt taaaatctac aggaatttgt tgataaatcg ccttttctaa acgcaattca
     3181 aaattctctt tttgactttg ttttaaactt tcaagtatat tcttaagact ttgcaaagaa
     3241 agcaaagtgt gaatttcatc gttttcatcg atcacaaacc aaggctcagg agaatcaaaa
     3301 cttccatttt caagaactaa acatttttcg ttttcattct cgctttgctt cattttaaaa
     3361 atcgttctat cttttttctt tattcctaga ttttgactaa attcatcaat gcgttttaag
     3421 caagtgctat acttttctag ctctttcatt ctcttcctct ctgattatcc aaaaagcaaa
     3481 gcaaggcttt taccacataa aggcgatttc ttgcttcttc aaaaatcaca tctgcatgtt
     3541 tttcaaaaat ttcttcactc acttcataac ctctataagc aggcaaacaa tgaagcaata
     3601 tcgcgtcttt attggcaacg ctcatagcct tttcatcgat cataaatcct tcaaattctt
     3661 taatcttacg ttctttttca ttctcttcgc ccatggaaac ccaagtatcg gtaatgacta
     3721 catctttatc ctttaaggct tcaaatttat catggcctaa ggaaatttta gctcctgaaa
     3781 tcaaagcctg tttcatagca aattcccaaa tttcagggct aattttatag ttttttggca
     3841 tagctatact aatttcaaag cccaaaatcg cagccgcaat aagccaagaa ttgcacatat
     3901 tattactatc tccgataaaa gcaacttttg ctataccatt ttgcatttta ttccattctt
     3961 tgatagtaaa caaatcccct aaaacctgag taggatgata aagctcgctt aaagcattga
     4021 tcacaggagc tttagaatat cttgcaaatt cgagtaaagt ttcatgttta ttgaccctca
     4081 tcatcacaaa atcaaccatc gcccctatca ccctagctgt atcctttaca ggctcaccac
     4141 gactaagttg taaatcattg ctgcttaaaa acaaagcctt tccgccaagc tctgttatgg
     4201 ctaattcaaa tgccattctt gttcttgtag agtttttctc aaaaatcatt gctaaagttt
     4261 tatcttgtaa aagtttttta ggctcttttt taagctcgct agcatgattt acaaggctta
     4321 aaatttcctc cttagaaaaa tctcttaaag ttaaaaaatg tttcattttt ctccttttaa
     4381 cgttttagct aattctttag catgataagt gatgataagc tttgcccctg ctcttttaaa
     4441 agctattata gtttcataca aaactttttc ataatcaatc actcctgcat ttttagctgc
     4501 ctttaacata gcatactctc cgcttacatt ataaacacac aaaggcaagt tagaatgaag
     4561 ggatatttct ttaaccacat caagataagc aagggcaggt tttaccatta aaatatcagc
     4621 tccttgtgct tcatcctcca agctttcttc taaagcttct ttaccattag caaaatccat
     4681 ttgatagctt tttctatctc cataacttgg agctgactct gctacatctc gaaatggccc
     4741 ataataactt gatgcaaatt tagtagaata cgccattata ggcaaatttt caaaaccttc
     4801 cttatctaaa gctttgcgca aagtagtgat aacaccatcc atcattccac taggtgctac
     4861 catatctacc cctgctcttg catgaactaa ggcttgcttg gctgaaattt ctaaagttgc
     4921 atcattatct acgctttttg tttttggatc gataatccca caatgcccgt gatctgtgta
     4981 ttcacaaaaa caaagatcac tgattataaa aagatctgga aaatttttct taatctctct
     5041 tatacttctt gcaacaagcc cttcatcatc taaagcatcg cttccacaac tgtctttttt
     5101 ctcattttct aaaacaccaa aaagtataat ggctttaatg cctaaattaa ctacattttg
     5161 acactctttt aaaatttcat ctaaactcat ttgaaacaca tcaggcatag aagaaatttc
     5221 tttttttatc cccgttccat taaccacaaa aagcggataa atcaaatcat ttacacttaa
     5281 agaattttcc cttaccatag atcttaagtt ttcattaagc cttaatcttc taaatctttt
     5341 aaacattttt ttgtcctttt tttgctaaaa tcttaacata aatttgatta tagagagtag
     5401 taaatggaaa taaaaatttc agaaattgcg aatttaccta gcaaatgggg aaatttccaa
     5461 atgcaaagtt tcaaagaaaa cgataaagaa catttatgca tatttaaaaa cactccaaaa
     5521 gatacactca atctaagaat tcattcagag tgcttaacag gagatgcttt aggaagttta
     5581 aaatgcgact gcggagaaca gcttgaattt tcgctaaaat atatagaaaa gaatggcgga
     5641 atggtgattt atcttagaca agaaggaagg ggtatagggc tttttaacaa ggttaatgct
     5701 tatgctttac aagataaagg ttttgatacg attaaagcaa atcatcagct tggctttaaa
     5761 gccgatgaga gaacttatga aattgtagaa tttatactca aacactatga aatttctaag
     5821 gttaatttac tcacaaataa ccctgaaaag ctagattcta tcaaagaaaa aatcatcaca
     5881 cgcataccga ttttaataga acctaatcgt tttaatgtag agtatttaaa cataaaacaa
     5941 actcaaatgg gacatcttaa ataaatgatt tttaaagatt atgatttttt gcaaaactac
     6001 gatttaaaaa actttgaaga aaaggtaaaa atttataaag aattattatc taaatttaac
     6061 cgcattcaca atcttactca tttaaaaaat atagatgaaa atatctttga tagtattaaa
     6121 attttagatt tttatgattt ttctaaagca aaaaatattg ccgatatggg aagtggcgca
     6181 ggatttccag ctgtattttt agctttttta ctgcaaagca attttcatct tttcgaaccc
     6241 aatcccaaaa aagctgcctt tttgcggaca ttaaaaatag aatgtgaact tccaaattta
     6301 catatttaca aagaaaaagt tcaagaatac aagcatacct ttaaagctga tatcatcact
     6361 tcaagagcct taatggatgt caagccttta cttgaaattt gcaaaaatct aaaagatgaa
     6421 aatacagttt ttattttatg gaaaggtagt gaaatttatc aagaacttga aaatataaaa
     6481 gattatgaaa tttttgaaaa taatttaaga agatattgta ttttaaagta gccctaaggc
     6541 tactttttat tctgctaaat cagcattaaa actgatatcc actaaaggcc aagaaattcc
     6601 accatgtcct gcagcaacat cgcttaatgc ttttaatgct ttagaaccat ttttaaaagt
     6661 atgcaaatca agttgtcctt tagcttcaaa tttattatct ttgatggtat aagttaaagg
     6721 tacaatagta ctttttttat ccatagtaat ttttgctgaa ataacgcctt tattttcacc
     6781 cgcaatcgca tcttgaaaaa caactttaat atccgtatct cccaataaag cagggaaaaa
     6841 tacttttgtg atattattgg ttataatatc attgccttca cccataaaag cattgcttgg
     6901 ctttatggta gctttagcgc ctttaagata acttgccaaa tcctttatat ttttagaaaa
     6961 tttatattct acatttttaa attcaccttt tgttcctatc atatctttag ttttatatcc
     7021 ttcaaaagaa acctttaaac tatcttcttt aaaagataca gcacttaaag ccgaagctaa
     7081 caagcaagaa cttaaaacac ttgcaagaat ttttttcatc tttattcctt tttaataaat
     7141 ttaattaatg aattaaatta tattcttagt tgattaataa aataaaaatt ttctaaaaaa
     7201 taatttttat taccaaagta tacctttaaa agctaaggtt aaaaaatatc ctccaaaaat
     7261 caaaacaagc cctaaaacaa aagccaagcc aaatacccta gagccacttt ttaaaaattt
     7321 tttaaagtca atttgcaagc ctaaagctgc catagcaaaa acgatacata aagtacaaag
     7381 tgttttacct aaagagatga tatcactcgt agcaatacct aaaatacttt ctttgcttgc
     7441 taaataagta tttaaaacta tcatgcctaa aaatgcaaaa gcaaaataag gtatagtgat
     7501 actttttgca gtttttccac tgcttgaatg ttgattttta gcgaaaaaat aagtcactat
     7561 aagcaaaaaa ggcacaagta aaatcactct catcattttt ataatcactg caacattaga
     7621 agcaccttgc tcaaatcctg ccatatcctt tgccatttca gcagcacctg cgacatttgc
     7681 cacctcatgc aacgtagctc ccataaaaac acccatagca ttttgatcaa aaaaaggaaa
     7741 aagatttaaa gaaaaaacta tgggatataa gaacataaat acaagtccaa aaatcaccac
     7801 cgtacctaca gctaaaattc ccttaaaagg atcacttttc aaacttgact ctagtgctaa
     7861 aaccgctgcc gcaccgcaaa tcgcactccc agctccaaca agcatagaag tttctttatc
     7921 gagtttaaaa attttcgttc ccacaaataa agcaataata aaaacaaaaa atatcactat
     7981 agcagaaagc aaaaatcctt tcaatcctac gcttaaaagc tcagttaaag tgatattaaa
     8041 accatataaa acaatgccaa gtcttaaaag ttttttcgca ctaaaatgca ctccggcttg
     8101 aaaatgatgt tggtatttaa aaaaccaagg agaaagcaac actcctatga taatagcaaa
     8161 agcagtcgct gctaaatgag tggtatcttt gatactttga acactagaaa gatacatagc
     8221 aaaaatcact atacaagcag taaaaagcaa acccttaaaa tttgatcgca ctatagccac
     8281 gctatgtgct aaaaaacttg ttttcattta ttttcctttt tgtaaatttt gtgttattat
     8341 atttttttta ttaaaattat agaaatatat tattttaatt tttataataa atttttttta
     8401 ttaaataaag gaatcactca tgaaaatcaa agatatggaa atatttttag atcttttaaa
     8461 cactcaaagt ccaactcata cagccaacaa tttttccata actcaaccta atgtttcaat
     8521 agtaattaaa aatttagaaa ataaatttga tggcatttta tttgaaagac ttggaaaaaa
     8581 actcttacct acaccaaaag ctttagaact aggaaaaaat tggttaaaaa ttatacaagc
     8641 ctactaccaa agcttagaaa aattaaacga cgaaagtatg ctcttagggg aaataaaaat
     8701 agcctcaact caaagcattt ctgaacattt tttagctcct attttatttg attttaaggc
     8761 agaatttaaa aacatagaaa ttcgctctca aacgcagaat tcaaaagaat gtttaaattt
     8821 actaaaaaac ggaaatatag aatttgcaat cattgaagca gaacttgatc cagctttagt
     8881 ggagtatgaa aatttagaaa taaatttttg gcaagatgat gaacttatag tagctacaag
     8941 tgataaaaaa ctcaatgaaa aagaatttta tatcgatgaa cttttggaac aaaagtggat
     9001 tttaagagaa gtaggctcag gcttaaggga taaattttta aacgaaattg gtgcaagctc
     9061 aaaaaaactt aatatttttc ttgaacttga tagaatggct gcgattaaag aacttgtttt
     9121 acaaaaaaaa gcaatctcta ttttttccaa aaaaagcata gaaaaagaat taaaaaattc
     9181 aacactttat gaaattaaat taaaaaatat cgacctaaag cgtaaatttt ataccttaaa
     9241 aagaaaaaat tataatttta acagagcttt agaaaaattt gaaaaaatat tcaaatcata
     9301 aacataataa ccgatttata tagaaagtta agcaattttt agataaaatc caaagcttat
     9361 ataaatttca aggataatca atgaacgcca aaactcaaga agctgaatta gaagaattat
     9421 ttcaagaaaa tgcaaaagat tatatcacat atgaaaaatt ggtaaaatat cttacaaaac
     9481 aaccaagtgc atcaaccact aaaaaagtgc aagcattaat gaaaaaacac aaagtgcaac
     9541 ttttttcagc agctgaaatt gcacaaatga aaaacataga agatgcaaaa agacttcaag
     9601 aagaaaaaca aaaactccaa gatacaagcc ttgagaacga atttgattta gccaatgaaa
     9661 acgatttatt agaatggagc agatcagact ctcctgttcg tatgtattta agagaaatgg
     9721 gacaaattgc tttattaaac aaagatgaag aaattgaaat ttccaaaaaa atagaacttg
     9781 gcgaagatat tatcattgat gctttttgtt ctgtacctta tttgatagat tttattttag
     9841 attataaaga acctttaata aacagagaaa gaagggtaaa agaactattt aaaagctttg
     9901 acgatgaaga aaaaagtgat gataaacttg atgaacttga tatagatgaa gatgaagaaa
     9961 acgaaacaga attagaatca gatgaagaaa atactaaaaa aaacagcaaa aaagaagatg
    10021 aaagaacttt aaaagttata gaaaaattta aagctctaga aaaagctaaa aaagattggc
    10081 taaaaacatc caaagacaaa gaaagcggag atgaactttt agataaatta agcattgcgt
    10141 tcaaaaaaaa tattttaaaa gaaaaattaa tggatctagg ccctacttca aaacttatta
    10201 gcgaaatcgt aaaatcaatg gaaactgcac taaaaagtga tgaagaattt gacaaagaac
    10261 ttaagcgttt agaataccgc ttacctatgt tttctgatga acttaaaaaa cgccatgcag
    10321 atattttaaa agatattaca aaattgagca aagaagaaat cacagagcga gctttagaaa
    10381 caaccatggt aagcacttat atggaaatta aaaaactatt tcaaactaaa gaagccagtg
    10441 aaaaaagctt tgatcttgaa aaatcacgct taaaagaaat tttggagcaa attaaacgcg
    10501 gtaaaaaaat ctctgatgaa gcaaaaggaa gaatggcaaa atcaaacttg cgccttgttg
    10561 taagcatagc taaacgctac acaaatcgtg gtctgccttt cttagacctt atccaagaag
    10621 gaaatatagg tttgatgaaa gctgtggata aatttgaata caaaaggggt tataaatttt
    10681 ccacttatgc aacttggtgg atcaggcaag ctatttcaag ggctatagct gatcaagcaa
    10741 gaaccataag aattccaatc catatgatag aaaccatcaa tcaaattaac aaaattatcc
    10801 gcgaacatct acaaaaagat ggaaaagaac ctgatgtcag tgttatagct aaagaagtag
    10861 gtttaagcgt agataaggtt aaacaagtta ttaaaatcac aaaagaacca atttctcttg
    10921 aagctccaat aggaaatgaa gatgatggta aatttggaga ttttgttgaa gatagaaatt
    10981 cactttctcc aatggatcat atcttaaagg atgatttaaa agaacaaatt gatgaagttt
    11041 tagatcaatt aaacgataga gaaaaagcgg taattcgtat gcgttttggt ttaatggatg
    11101 atgaaagtga tagaacttta gaggaaattg gaaaggaact taatgtcact cgagaaagag
    11161 tgagacaaat agaaagctca gctataaaaa aactcaaaca ccctaaagta ggaagaaaac
    11221 taaaaaatta tatagaaggt tggaagtaag agtcaatctc cttactaaaa acccagatct
    11281 ttttcttctt ttaacttgcg tacatgttca aaaaaaacta attttccgct atgttttttt
    11341 aaatttttaa attccttaat atcaaattct aaacacaaga tagaagaagt tggaaaagaa
    11401 gctaaacata gcgaacttaa taactctcca agctccatta aactaggatt atgacccact
    11461 aaaaatactt cattaaactc atcatcaata tcttgcagaa tttttagcaa attttcaaca
    11521 ttgcaaagat acaatctttc atcaaaacaa attctatttt tatcaaaatt ataaaatttg
    11581 gctatttttt tcgctgtttt agcggttcta acagcaggac tcgatagcac caaatcagga
    11641 tgaatttcat gcgaagcaag atttttaaaa agttttttta aatcttcctt tccactctta
    11701 gtaagttttc tttcaaaatc atcgatgtct tcactcttac ttgcttttgc atgtcttata
    11761 atataaattt ttttcatttt acctctttta ttttagctaa aatataacca cacataaacc
    11821 cgaaaatatg accataccaa gcaacattta ctcccataag caatggcaca aaactcataa
    11881 gtaaaattgc cactataagt ccttttgtgc tatttttatc aataacagca taaaagccta
    11941 ttaaaacaca aattgcacca ctagcgccta tgacatttat attttctcca aaatatttaa
    12001 aatcaaaata cacataaaaa acacttaaaa gtgagcacaa caatccgcca ataaaataaa
    12061 taaaaataaa acacaaagca cccaaataag tttctaacat acgcccaaat tgaaacaaaa
    12121 ctatcatatt taatataaga tgagttaaat ttccatgtaa aaacattgaa cttaaaagct
    12181 gccaataagc tccattaaaa aataaaatat tcaaaccaag gatattgtaa taatcataag
    12241 aaatcaaaaa ataacataaa atatttaaaa aaattaaaaa aattaaaaaa attgtaagca
    12301 aaatataaaa cctttatttt ttataatatt gtcttaaaat tcacataaaa ttcacataaa
    12361 ttctttacaa tttt
//
LOCUS       DAPOLW010000044        12077 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.044, whole genome shotgun sequence.
ACCESSION   DAPOLW010000044 DAPOLW010000000
VERSION     DAPOLW010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12077)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12077)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12077
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.044"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..433)
                     /locus_tag="ROE18_000849"
     CDS             complement(<1..433)
                     /locus_tag="ROE18_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651039.1"
                     /translation="MKHCLALCFVFFLCACSVKNQNFSSQSLMVLIASPMIKINDTAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINAVCYDKQVFNQKFFKNVYYDDILSDIL
                     KANPLWQGKNLEKTDCGFEQNLKAKNYEIFYQVCDNKVSFFD"
     gene            complement(442..933)
                     /locus_tag="ROE18_000850"
     CDS             complement(442..933)
                     /locus_tag="ROE18_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HDX3651040.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPKAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKVIKDSKLKVNSSIRGEEIRVAAKQIDDLQAVMKLVKELDLELNISFK
                     NLK"
     gene            complement(923..1858)
                     /locus_tag="ROE18_000851"
     CDS             complement(923..1858)
                     /locus_tag="ROE18_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HDX3651041.1"
                     /translation="MKIVCLDAATLGDYDLSVFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGVNNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQVLYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGTIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKLLKDNAILINVGRGGIVNENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(1861..3030)
                     /locus_tag="ROE18_000852"
     CDS             complement(1861..3030)
                     /locus_tag="ROE18_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HDX3651042.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVINNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLAHIANEAGFQTNFSFVDEVEFS
                     EEGIFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(3040..3645)
                     /locus_tag="ROE18_000853"
     CDS             complement(3040..3645)
                     /locus_tag="ROE18_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HDX3651043.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCGSNNDNADTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSASSAKKSGFFGGGSKATSSSSSFGS"
     gene            complement(3765..3977)
                     /locus_tag="ROE18_000854"
     CDS             complement(3765..3977)
                     /locus_tag="ROE18_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HDX3651044.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            4137..5513
                     /gene="ccoG"
                     /locus_tag="ROE18_000855"
     CDS             4137..5513
                     /gene="ccoG"
                     /locus_tag="ROE18_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HDX3651045.1"
                     /translation="MQGHITNYTKKRYFVYLIASIIIFSLPFIRINENHFFLLSFDHS
                     KLNLFFISFSTQEFYLMPFVLIFLFLFIFFITTLGGRIWCAWSCPQTIFRVIYRDIIQ
                     TKFLKIRKNINNKQKEYERQYFKKFLGVIIFYFISLVAVSNLLWYFIPPEDFFNYIQN
                     PGEHLLLLGILFCASLLFTLDITYLQEKFCVYVCPYARIQSVMFDHDTMQVIYDEKRG
                     GLIYDGHTKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQS
                     KFNRPSLINWTSAKAIETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESMLLNIN
                     RSSELYNISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRPNKPFK
                     LKAGEQVKKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVYPKSTL
                     IKDKNELK"
     gene            5500..6132
                     /gene="cmeR"
                     /locus_tag="ROE18_000856"
     CDS             5500..6132
                     /gene="cmeR"
                     /locus_tag="ROE18_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HDX3651046.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMGFFKQQNNSYMKKNAEK
                     LAVLFCTMLKEPYHHLNVLINAPLKNKKEQKEHVEFVVNVFLNGINSSKA"
     gene            6227..7330
                     /gene="cmeA"
                     /locus_tag="ROE18_000857"
     CDS             6227..7330
                     /gene="cmeA"
                     /locus_tag="ROE18_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HDX3651047.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEAPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIENKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQNGKWDLDSIHANLNLNGETVQGKLYFIDSVIDANSGTVKAKAIFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQNQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            7330..10452
                     /gene="cmeB"
                     /locus_tag="ROE18_000858"
     CDS             7330..10452
                     /gene="cmeB"
                     /locus_tag="ROE18_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HDX3651048.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGAIGLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPSSLVPEED
                     QGLMIGIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLKDWKDRNVSADEIAMELNKKFAFDRNASSIFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAVANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            10445..11923
                     /gene="cmeC"
                     /locus_tag="ROE18_000859"
     CDS             10445..11923
                     /gene="cmeC"
                     /locus_tag="ROE18_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HDX3651049.1"
                     /translation="MNKIISISAIASFTLLISACSLSPNLNIPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSGF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKEAYKSAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNT
                     KYSYANSIVDVIKAFGGGFEQSEDTSKNIKEESKNLDMSFRE"
BASE COUNT         4177 a         1968 c         1770 g         4162 t
ORIGIN      
        1 tatcaaaaaa acttacttta ttatcacaaa cttgataaaa aatttcataa ttttttgctt
       61 ttaaattttg ttcaaaacca caatcagttt tttctaaatt tttaccctgc cataaaggat
      121 ttgcctttaa aatatcactt aaaatatcat cataatatac atttttaaaa aatttttgat
      181 taaacacttg tttatcataa catactgcat tgatacaaat tttatctttg attttgagtt
      241 caaaaaaagc ttgccctagt ttataaactt ctaaatttaa agcattattt tcttttttta
      301 aaaaagctgt atcattgatt tttatcatag gggaagcaat caaaaccatc aagctttgac
      361 ttgaaaaatt ttgatttttc acactacaag cacaaagaaa aaaaacaaaa catagagcta
      421 aacaatgttt caaatttgac cttatttgag atttttaaaa ctaatattta actctaaatc
      481 aagctctttt acaagcttca tcacagcttg taaatcatcg atttgttttg ctgcaacacg
      541 aatttcttca ccacgaatcg aagaattaac tttaagcttg ctatctttaa taactttatt
      601 gattttttta gcattttcac tatcaatagc atcgtttgct ttcaaattta aacgaaacat
      661 tgctccactt tcacgagaaa gctctttaat agctttagga ttaattcctc ttttgataag
      721 tttagaaatc actatatctt ttaaaacatc aagttttcct tcactagaag aactgagttt
      781 aaaaatactc tctttttcgc ttaaatcaat ctcacactta attcctttta agtcataacg
      841 actatcaagt tcttttttag cttgttcaaa agcatttttt aactcttgtt tatctaaagc
      901 tgctgaaata tcaaaactat gttcacttgc cattttctat ccattctttt aaattattat
      961 aaactatatc cattaaagca tttaaagcct ccttgctcgc ccacgcaaca tgaggagtga
     1021 taataagatt ttctttattt ttaatgctta aaagtggatg atttttcatc ataggttcaa
     1081 tttctaaaac atcaagccct acacgaatat ttttttcatc tatgatttta gctaaatcat
     1141 tttcattgac aatcccacct cttcctacat taatcaaaat cgcattatct tttaaaagct
     1201 ttaattcttc aaaggcgagt aaatttttgg ttttttcatt taaaggtgcg tggatactta
     1261 taatatcgca agtttttaat aaatctttta attccaaatg tacaaaatct gcgtttttat
     1321 tagctccact cgtagaataa taataaattt cggctccaaa agcctttgaa atttttgcca
     1381 cttctttacc tatggttcct aaacctataa taccatgttt tttaccactt aaggtgttta
     1441 aaattctact ataatctgta aaaataggac tttcacacca tttaccctct ttgctccatt
     1501 tgtcataata aagcacttga tttaaaaaag caaacataaa tgcaaaagta tgttgcacca
     1561 cactcatagt agaataccca gcagcatttt ttacaataat acctttttct ttagcatact
     1621 caatatcgat attattaacc cctgtagcag tttccaaaat gagttttaaa tttttacaag
     1681 catcaatcac atctttatca attacaacct tgtttgtcat ggcgacatta gcatctttta
     1741 aacgctctat ggtttgctct ttatttgttg tggtataaat ttgcaaagaa ccaaattttt
     1801 caaaaacact taaatcataa tcccctaaag ttgccgcatc taaacaaaca attttcattt
     1861 ctaatccttt ataatatgtc ctacaaattt agaataatta tcaagcacaa gtcctccttt
     1921 tctaaatcct aagccacacc cttcataagc aaagaaaaca cctgcttgat agtattcgtt
     1981 ttcacatgaa ttaaactcta catattcttg ataaatagcc ttattattcc cataaggacc
     2041 tacattctca tgcaaagttt ttccatcttt aattatactg atatttgcac cttctctacc
     2101 aaaaacaggt tttttaacat agtttttacc ttccaaagga gtatcttttg tttctaaaag
     2161 taatggatga tttggataaa gttcccatag aatttttaaa attcccttag attgaaataa
     2221 aagcgtataa gcaggattta aaataattgc tctttgatta cgcatgattt gagttaaaag
     2281 catagcaagt tcaccctctt ctatggctat atcttcccaa ggaataagct taaaccaata
     2341 ctcataattt tcaccctctt taaaaattcc ttcttcacta aattctacct catctacaaa
     2401 ggaaaaatta gtttgaaaac ctgcttcatt ggctatatgt gcaagcaatt ttgtagtgat
     2461 ttcctcttct ttacttcctg caacacttga aaaaagaatt ttccatcctt gataatgctc
     2521 ttcaaaccct tcaacacttt catcaagggt aataagtctt ttaaaattat ccatcaaact
     2581 ttcataaatg ctgttaaatt gtgcgctttc atccattcca ttttgtttta aaagtgccca
     2641 ttgtaaaatc gcactttcaa aaagagcagt aggggtatca gcattaaatt ctataagttt
     2701 tataggcttg ccatcaagtc cacccgctaa atcaaaacgc ccatataaat gccaatgaac
     2761 ctcattttcc caactcatct taatcgcatc aataagatta aaaggaattc caagctcatc
     2821 aaaacgatca ttattaatca cttcttgcgc tgcagcaata aacatatcat aaagctcatt
     2881 taccgcttca taataagcat tagcttcact ttccttaaca caaactaact tattgctaat
     2941 ataatcactt ccatcttcat ctgtatgcca agaaaaacct atattttcta aataatcttt
     3001 ttgaagtttg tctacttgta ataattgcat tatttatcct taagagccaa aagaagaact
     3061 agaacttgtg gctttagagc ctccaccaaa aaaacctgat tttttagcac ttgaagcaga
     3121 gcttgttgtg cctgctttat taaaactatt aacactcctt tgataagcac tttgatttga
     3181 aaaagcaccg cgttgttggt tggcaaaatt ttgattattg aaaagttttg aacctatcca
     3241 acttcctaaa atagcacctg cagcacttgc gagtaaagtt tcccctaaac tcaatccccc
     3301 actactgatt tgtccattgt ctttagttaa atttgaagtt ccattatcaa ttttagctgc
     3361 ttcttcttta atcaaagcat ccatttcttc tttggataaa attctttctg taccattaag
     3421 atcttttaaa actacccttg tttcatcact tggatattga tctttgattt tatactgccc
     3481 tggagctgtt tcttcgataa ttacaaaagc tccttgagca ttagccgctt gatttaaagt
     3541 atctgcattg tcattattac ttccacaacc tgctaaagca cctccagcaa cagctgctaa
     3601 accacctatc ataccaattt gaatgatttt tttgattttt ttcataagtt tatcctaaaa
     3661 acagaaaatt taaattagaa attttaacaa aaaataataa atacttttta atttaatacc
     3721 aaatgaagtt tgtagatata aaaaagccct ttcgggcttt tgggttagag tcttgactcg
     3781 tagcgtctaa gcatataaag tcttttaagc atttttttgc gtgctgaaat tttttgtttt
     3841 ttgcgaattt cagtcatagg ctcaaaaaat cttcttgctc ttacttcagt cacaactaga
     3901 tttctatcta cttgtttttt gaatttacga tacgcttcat caaaagactc gttaggatgc
     3961 accttgattc ctggcacagt cctcaccacc tttctgtgta aatttttgtt gtgaaatata
     4021 attataaaac acttcttatt aattctaact tagaaagcat ttaaaaattg ttttagtttt
     4081 tatcggttat aatccttaat tacaaagtgc taaaaaatta taattaaggt ctaaaaatgc
     4141 aaggacacat tacaaactat acaaaaaaac gatattttgt atatttaatt gcaagtatta
     4201 tcatattttc cctacctttc ataagaatta atgagaatca tttttttctt ttaagttttg
     4261 atcattctaa attaaaccta ttttttattt ctttttcaac acaagaattt tatctcatgc
     4321 cttttgttct tatatttctt tttttattta ttttttttat tacaacttta ggtggaagaa
     4381 tttggtgtgc ttggagttgt ccacaaacga tttttagagt tatatataga gatatcatac
     4441 aaactaaatt tcttaaaatt cgcaaaaata tcaataacaa acaaaaagaa tatgagaggc
     4501 aatattttaa aaaatttctt ggagtgataa ttttttattt tatatcttta gttgctgtta
     4561 gtaatttact ttggtacttt attcctcctg aagatttttt caattatatt caaaatcctg
     4621 gcgagcatct acttttactt ggaattttat tttgtgctag cttacttttt actttggata
     4681 ttacctattt acaagaaaaa ttttgtgttt atgtctgtcc ttatgcaaga atacaatctg
     4741 taatgttcga tcatgataca atgcaagtga tctacgatga aaaacgcggg ggcttgatct
     4801 atgatggaca caccaaactt cataaaaaac cgcctgaggg agaatgcata ggttgcgaag
     4861 cctgtgttag tatctgtcca actcatattg acatacgcaa aggaatgcaa cttgaatgta
     4921 ttaattgtct tgaatgtgcc gatgcttgct ctaaggttca aagcaaattt aatcgtccaa
     4981 gtttgatcaa ttggacaagt gcaaaagcta ttgaaacgcg ttctaaggtt cattatttaa
     5041 gatttagaac gatagcatat tttatagttc ttttaattgc tttactggct ttaatcatca
     5101 tgggaagcaa aaaagaaagc atgcttttaa atatcaatcg tagtagtgaa ttatataata
     5161 tttcaaatgt taaaggtgaa ttagtcattt caaatgctta tacctttttg tttcaaaata
     5221 cagattctaa acctcatgaa tattatttta cagcaaattt agaaggaata aatgatggaa
     5281 ttgaaatcat aagaccaaac aaacctttta aattaaaagc aggagaacaa gtcaaaaaaa
     5341 tagttgttat cagggctaca aaaaatttag caaataatga taaaaaagac gtaatctttc
     5401 ctttacatat aaaagcttac gcaaaggata atgaaaaaat ttcggttttt agaaaaagta
     5461 tatttgtata ccctaaaagc actcttataa aggataaaaa tgaactcaaa tagaacacca
     5521 tcacaaaaag ttttagccag acaagaaaaa atcaaagcag tggccttaga gcttttttta
     5581 acaaaaggat accaagaaac aagtttgagt gatattatta aattatctgg aggatcttat
     5641 tctaatattt atgatggttt taaaagtaaa gaagggctat tctttgaaat tttagatgac
     5701 atatgtaaaa aacactttca tcttatttat tccaaaacac aagaaattga aaatggcact
     5761 ttaaaagaaa ttttaacttc ttttggttta gcttttatag aaattttcaa tcaaccagaa
     5821 gctgtagctt ttggtaaaat tatctattct caagtttatg acaaagatag acatcttgcc
     5881 aattggatag aaaataatca acaaaatttt tcctataaca tacttatggg ttttttcaag
     5941 caacaaaata attcttatat gaaaaaaaat gcagaaaaac ttgctgttct tttttgcact
     6001 atgttaaaag aaccttatca tcatcttaat gttttaatta acgctccttt gaaaaataaa
     6061 aaagaacaaa aagaacatgt tgaatttgtt gtaaatgttt ttctaaatgg aatcaatagc
     6121 tccaaagctt aaaaaataat tttattaacc aaaattaaga tataattagc caaaaatttt
     6181 tgtaataaaa attacaattt ttaatttaat ttttcaaggc aaaaccatga aattatttca
     6241 aaaaaatact attttagctt taggtgttgt gcttttactc actgcttgca gcaaagaaga
     6301 agcaccaaaa atacaaatgc cgcctcaacc tgtaacaacc atgagtgcta aatctgaaga
     6361 tttaccactt agttttactt accctgctaa acttgtcagt gattatgatg tcattataaa
     6421 gcctcaagtt agtggcgtaa tagaaaataa actttttaaa gctggagata aagtaaaaaa
     6481 aggacaaaca ttatttatta tagaacaaga caaatttaaa gctagtgttg attcggctta
     6541 cggacaagct ttgatggcta aggcaacttt cgaaaatgca agcaaggatt ttaatcgttc
     6601 taaagctctt tttagtaaaa gtgcaatctc tcaaaaggaa tacgactctt ctcttgctac
     6661 atttaacaat tcaaaagcta gtctagcaag tgctagagca cagcttgcaa atgcaagaat
     6721 tgatctagat cataccgaaa taaaagctcc ttttgatggt actataggag atgctttagt
     6781 taatatagga gattatgtaa gtgcttcaac aactgaacta gttagagtta caaatttaaa
     6841 tcctatttac gcagatttct ttatttcaga tacagataaa ctaaatttag tccgcaatac
     6901 tcaaaatgga aaatgggatt tagacagcat tcatgcaaat ttaaatctta atggagaaac
     6961 cgttcaaggc aaactttatt ttattgattc tgttatagat gctaatagtg gaacagtaaa
     7021 agccaaagct atatttgaca acaacaactc aacactttta ccaggtgctt ttgcaacaat
     7081 tacttcagaa ggttttatac aaaaaaatgg ctttaaagtg cctcaaatag ctgttaaaca
     7141 aaatcaaaat gatgtttatg ttcttcttgt taaaaatgga aaagtagaaa aatcttctgt
     7201 acatataagc taccaaaaca atgaatatgc cattattgac aaaggattac aaaatggcga
     7261 taaaatcatt ttagataact ttaaaaaaat tcaagttggt agcgaagtta aagaaattgg
     7321 agcacaataa tgttttctaa attttttatc gaaagacctg tttttgcttc agttgttgca
     7381 attatcattt ctttagctgg agctataggt cttacaaatt tacctataga acaatatcct
     7441 tctttaaccc ctcctacagt taaagtaagt gcaacttaca caggagctga tgcacaaacc
     7501 attgcttcaa cagttgcaag tcctatcgaa gatgcaatca atggcgcaga taatatgatt
     7561 tacatggatt caacttcaag ttcttcagga actatgagtt tgactgttta ttttgatatc
     7621 ggtacagatc ctgatcaagc caccatagat gttaataata gaatttcagc cgcaactgca
     7681 aaaatgccag atgcagttaa aaaacttgga gtaacagtta gaaaaacttc ctcaacaaca
     7741 cttgctgcaa tttctatgta ttcaagtgat ggctcaatga gtgcagtaga tgtatataac
     7801 tatatcactt taaatgtttt agatgagtta aaaagggttc caggagttgg agatgcaaac
     7861 gctataggaa atcgtaatta ttctttaaga atttggctca agcctgattt attaaataaa
     7921 tttggaatca cagctactga tgtaatttct gcggttaatg accaaaatgc ccaatacgca
     7981 actggtaaaa ttggcgaaga acctgtaacc caaaaatccc cttatgttta ttcaatcact
     8041 atgcaaggaa gactacaaaa tcctagtgaa tttgaaaaca ttattttaag aacaaataat
     8101 gatggatcat ttttaagact taaagatgta gctgatgtgg aaataggatc acaacaatac
     8161 agctcacaag gacgattaaa tggcaatgat gcagttccaa ttatgatcaa tcttcaatca
     8221 ggggcaaacg cattgcatac agcagaactt gttcaagcta aaatgcaaga actttcaaaa
     8281 aattttccaa aaggtttaac atataaaatt ccttacgata caacaaaatt tgtaatagaa
     8341 tcaatcaaag aagttgttaa aacttttgtt gaagctctaa ttttagttat cattgttatg
     8401 tatatgttct taaagaattt ccgtgcaaca cttattccta tgatagctgt acctgtttca
     8461 ttgttaggaa cttttgctgg actttatgtt ttaggtttta gtattaactt gcttacgctt
     8521 tttgctttaa ttttagccat agggatcgtt gtagatgatg cgattatagt tgtagaaaat
     8581 attgatagga ttttacatga aaatgagcaa ataagcgtaa aagatgctgc tatccaagcg
     8641 atgcaagaag ttagctctcc ggttatttca attgttcttg tgctttgtgc tgtttttgta
     8701 ccagtttctt ttatatcagg ttttgttgga gaaattcaaa gacaatttgc tcttacctta
     8761 gctatatctg taaccatatc aggttttgtt gctcttacct taacaccttc tttatgtgca
     8821 ctctttttgc gacgtaatga aggagagcca tttaaatttg taaagaaatt taatgatttt
     8881 tttgattgga gtacctctgt atttagcgca ggagtagcat atattctaaa aagaaccatt
     8941 cgttttgttt taattttttg tattatgctt ggggcaattt tttatctcta taaagctgta
     9001 ccaagctctt tagttcctga agaagatcaa ggtttgatga ttggcattat caaccttcct
     9061 tcggcttcag cactccatag aacaatctca gaagttgatc acataagcca agaagtttta
     9121 aaaactaatg gagttaaaga tgcaatggct atgataggat ttgatctttt tacaagttca
     9181 ctcaaagaaa atgccgctgc aatgtttata ggcttgaaag attggaaaga tagaaatgtg
     9241 agtgctgatg aaatcgccat ggagcttaat aaaaaatttg cttttgatcg caatgcttca
     9301 agtatattta taggcctacc tcctatacct ggattaagta tcacaggcgg ttttgaaatg
     9361 tatgttcaaa acaaaagcgg aaaaagctat gatgaaatac aaaaagatgt aaataaactt
     9421 gttgctgtgg ccaaccaaag aaaagagcta tcaagagtaa gaacaaccct tgatacaact
     9481 ttccctcaat acaagcttat aattgataga gataaattaa aacactacaa tcttaacatg
     9541 caagatgttt ttaacacgat gaatgcaact ataggcactt attatgttaa tgatttttct
     9601 atgctaggta aaaacttcca agtaaatatc cgcgcaaaag gtgattttag aaatacacaa
     9661 gatgcattaa aaaatatttt tgtaagatca aatgatggaa aaatgatacc acttgattct
     9721 ttcttaactt tacaaagaag ttcagggcct gatgatgtaa aacgattcaa ccttttccca
     9781 gcggcacaag ttcaaggtca acccgcacca ggttatactt caggtcaagc tatagaagcg
     9841 attgctcaag tagcaaaaga aactttaggg gatgattatt ccatagcttg gagtggatca
     9901 gcttatcaag aagtttctag taaaggaaca gcaagttatg cttttgcttt aggtatgata
     9961 tttgtctttt taattctagc tgcccaatat gaaagatggc ttataccttt agcagttgta
    10021 acagctgtac cttttgcggt atttggatca tttttattgg tatatttaag gggatttagc
    10081 aatgacatat attttcaaac aggacttttg ctcttgattg gactttcagc taaaaatgct
    10141 atcttaatcg tagaatttgc aatggaagag cgctttaaaa aaggcaaagg agtttttgaa
    10201 gcagctgttg cagcagcaaa acttcgtttt cgtcctatca taatgacttc tttggcattt
    10261 acttttgggg tcttgccaat gattttcgca acaggggcag gaagtgcttc aagacactct
    10321 ttaggaacag ggcttattgg tggaatgatc gcagcatcaa ctttagcgat attctttgtg
    10381 cctttatttt tctatctttt agaaaatttt aatgaatggc tagataaaaa aagaggtaag
    10441 gttcatgaat aaaataattt caattagtgc tatagcaagt tttactcttt tgatttcagc
    10501 ttgctcttta agtccaaatt taaatattcc cgaagcaaac tatagcattg ataataagct
    10561 tggagcctta tcttgggaaa aagaaaacaa tagctctatc acaaaaaatt ggtggaaaga
    10621 ctttgatgat gaaaatttaa ataaagtggt tgatttagca cttaaaaata ataatgattt
    10681 aaaacttgct ttcatacaca tggaacaagc tgctgctcaa ttaggtatag attttagcag
    10741 tttgttgcca aaatttgatg gtagcgcaag cggaagtcgt gcaaaaacag ctataaatgc
    10801 tccaagcaat cgaactgggg aagtaagtta cggtaatgat tttaaaatgg gacttaattt
    10861 aagctatgaa atcgatcttt ggggaaaata tcgcgataca tatcgcgcct caaaatcagg
    10921 ctttaaagca agtgagtatg attatgaagc tgcaagactt tctgttattt caaatacagt
    10981 tcaaacttat tttaatcttg taaatgctta tgaaaatgaa aatgctctta aagaagccta
    11041 taaatctgca aaagaaattt ataggattaa tgatgaaaaa tttcaagttg gtgctgtagg
    11101 tgaatatgaa cttgctcaag caagagccaa cttagaaagt atggctttgc aatataatga
    11161 agcaaagtta aataaagaaa attaccttaa agctttaaaa attttaactt caaatgattt
    11221 aaatgacata ctttacaaaa atcaaagcta tcaagttttt aatcttaaag aatttgacat
    11281 tccaactgga atttcaagta ccatcttgct tcaacgtcca gatattggct cttctttaga
    11341 aaaattaact cagcaaaatt atcttgttgg agtagctcgc acggctttct tacctagcct
    11401 ttctttaaca ggattattgg gatttgaaag cggggattta gataccttgg ttaaaggagg
    11461 ttctaagact tggaatatag gtggaaactt tactctgcct atttttcatt ggggtgaaat
    11521 ttaccaaaat gtaaatttag ccaagcttaa taaagatgaa gcttttgtaa attatcaaaa
    11581 tactttgatt actgcttttg gagaaattcg ctatgcttta gtagctagaa aaactatacg
    11641 cttacaatac gataatgcac aagcaagcga acaatcttac aaaagaatct atgaaattgc
    11701 taaagaacgc tatgatatag gagaaatgtc tttgcaagat tatttagagg cacgtcaaaa
    11761 ttggcttaat gctgccgttg cttttaataa tactaaatat tcttatgcca attccatagt
    11821 agatgtaatc aaagcatttg gtggaggatt tgagcaaagt gaagatacga gtaaaaatat
    11881 aaaagaagaa tcaaaaaatt tagatatgtc ttttagagaa tagtttgttc tattctctaa
    11941 ataaattaaa aatctttgtc taaatctgca tctgtaattt cataagcctt gtaaatagca
    12001 ggcaataatt ttcttatagc ataatcaaaa tgataaaatt gcttatatac ctcttctgga
    12061 tttaaatttt tagcatt
//
LOCUS       DAPOLW010000045        11926 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.045, whole genome shotgun sequence.
ACCESSION   DAPOLW010000045 DAPOLW010000000
VERSION     DAPOLW010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11926)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11926)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11926
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.045"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..249)
                     /locus_tag="ROE18_000860"
     CDS             complement(<1..249)
                     /locus_tag="ROE18_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651050.1"
                     /translation="MKQEISSFWYTPRGYKGIGLMELLSIKSFIDNGYKFILYTYNLD
                     DKIFKKLDELFDDFELKDANEIVSFKNYFRDDRGSGVAA"
     gene            complement(233..1057)
                     /locus_tag="ROE18_000861"
     CDS             complement(233..1057)
                     /locus_tag="ROE18_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDX3651051.1"
                     /translation="MPQLSIIIPLFNSCNFISRALQSCINQTLKDIEILIIDDKSKDN
                     SLNMVLEFAKKDPRIKIFQNEENLGTFASRNLGVLHSSSDFIMFLDSDDFLTLDACKI
                     ALKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEFFNQKEFLEFLSKQRHFCWSVWAKC
                     FRKDIILKSFEKIKIDERLSYGEDVLFCYVYFMFCEKIAVFKTCIYHYEFNPNGRYEN
                     KNKEILWQNYQDKKKSNELVKKLCLNFKNNDFHKKLFEVLEKEEFDLQRRVDEARN"
     gene            1116..2075
                     /gene="waaF"
                     /locus_tag="ROE18_000862"
     CDS             1116..2075
                     /gene="waaF"
                     /locus_tag="ROE18_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HDX3651052.1"
                     /translation="MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTAL
                     FKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLV
                     HLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL"
     gene            complement(2056..2616)
                     /gene="gmhA"
                     /locus_tag="ROE18_000863"
     CDS             complement(2056..2616)
                     /gene="gmhA"
                     /locus_tag="ROE18_000863"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HDX3651053.1"
                     /translation="MINLVEKEWQEHQKIVQASEILKGQIAKVGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP
                     SDDTARIQEMHILIIHTLCQIIDESF"
     gene            complement(2613..3998)
                     /gene="rfaE1"
                     /locus_tag="ROE18_000864"
     CDS             complement(2613..3998)
                     /gene="rfaE1"
                     /locus_tag="ROE18_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HDX3651054.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYTNLKSLGADVFALGVVGDDKSGKFLQENLKGEFLIQKGRKTPFKNR
                     IMAHNQQVLRLDEEDISAILLENELIALFDEKIKDFKAVVLSDYAKGVLTPKVCKAVI
                     KKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFENLEGENLEKGIKKLKE
                     DFSLRYSIITLSEAGIALFDEGLKIAPAKALEVYDVTGAGDSVIAVLAFCLANEIEIF
                     KACELANEAAAVVVSKIGSVSVSFDEIKSFKRVDFEKKIKSKEELLVLLKQNNKKIVF
                     TNGCFDIVHFGHIKYLDKAKRLGDVLIVGLNSDASVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDEDTPLELISFLKPDILVKGADYKDKLVVGADIVSRVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            complement(3991..4944)
                     /gene="rfaD"
                     /locus_tag="ROE18_000865"
     CDS             complement(3991..4944)
                     /gene="rfaD"
                     /locus_tag="ROE18_000865"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HDX3651055.1"
                     /translation="MRIAITGGAGFIGSQLALNLQEKHEILIVDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIEDFKPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEEPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKNKTASMVLQFGHQILAGKNPRLFEGSDQIYRDFT
                     YIKDVINANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLPCEYIPNPYVKSY
                     QFHTEAKLDQTWDYRPKFTLEEGIKDYLGEIKRLFEKEVNA"
     gene            complement(4945..5505)
                     /gene="gmhB"
                     /locus_tag="ROE18_000866"
     CDS             complement(4945..5505)
                     /gene="gmhB"
                     /locus_tag="ROE18_000866"
                     /EC_number="3.1.3.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HDX3651056.1"
                     /translation="MFIFFLKKLYYNVFMKTKALFLDRDGVINIDKKYVYKIEDFEFC
                     DGIFELCRYFLARNYLLFIATNQSGIARGYYKESDFFKLCDYMLKEFAKQDIKIDKIY
                     HCPHLEGCECRKPKAGMLLKAKDEFDLDMKNSIFIGDNLSDMQAGLNADIGTLILVNE
                     EKKEGDFFRQFKNLKEILSFFKEKDI"
     gene            5587..5889
                     /locus_tag="ROE18_000867"
     CDS             5587..5889
                     /locus_tag="ROE18_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HDX3651057.1"
                     /translation="MKKLLVVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            complement(5912..6118)
                     /gene="ccoS"
                     /locus_tag="ROE18_000868"
     CDS             complement(5912..6118)
                     /gene="ccoS"
                     /locus_tag="ROE18_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HDX3651058.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDAIELERRKKEALDKKRLS"
     gene            complement(6115..8472)
                     /locus_tag="ROE18_000869"
     CDS             complement(6115..8472)
                     /locus_tag="ROE18_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HDX3651059.1"
                     /translation="MIMKCEHCKLDYKQAQMIEYKGKFFCCKGCESVWEILHESGLDE
                     FYEKLGNQTLSPVNFQNEMKNYDEFITKTKEGFSEIYLMIHGIECAACVWLNEKILTK
                     QEGILELDINHLNHKARIVFDEQSISLVQILRLIESIGYKASAYDASKASKKADLLKR
                     EFYSKLVVAIACVMNIMWIAVAKYAGFFSGMDKDTKDILNFAEFILCSPVLFYTGSHF
                     YKSAFKTLKMHSLNMDVLVISGASLAYVYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTIDGLNDFLQNEVLVFNGKEFVSKEVQKVCLGDRILLKTGDKILIDG
                     ICKSGEMSVDTSSLNGENTPKLIQKEDEIFSACIVLDGSVEYEATKLYKDSKLSQIIQ
                     LLELASSKKAKLESLVNSLLAYFSRTVLLIAFICFAFWFFYKEESFEISLVNAIAVLI
                     IACPCALALATPVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELE
                     LKEVFLDKALDLNELYNFVKLSKHPISQNIVLYLKQKGAKDLNLDFKKHSSIQAKGLS
                     AELNEGLLLGGSSKFLQEKGIVAKEFDNTHFIFAKEGKILAFFEFDSVLREGAKELIA
                     YLKKEKKELMILSGDHQKAVEKIAKKLEIQNYQASCLPEDKMKTIENLSKNYKVLFVG
                     DGVNDALALKYASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQN
                     LAFSLFYNACTIPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            8581..9879
                     /gene="rho"
                     /locus_tag="ROE18_000870"
     CDS             8581..9879
                     /gene="rho"
                     /locus_tag="ROE18_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HDX3651060.1"
                     /translation="MEKEKKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IKKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQ
                     KIWAIRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            9883..11412
                     /locus_tag="ROE18_000871"
     CDS             9883..11412
                     /locus_tag="ROE18_000871"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HDX3651061.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFVYLEELQDYEAS
                     SVIDEMLFYLKESFFAKSTEFSTLIYERFFRILSKAKNMLCDDDGFTLCVMAFMMMEA
                     SHLKEIDAQIQEIKQENTTNIIPRITPSPIIPHLEKKTEKNAYEILLDSIYDRDFDLA
                     ECFKQSTNFISFENNTLNINSNAQGQNRDTLNKGFKLIQELFKAKFGENAKINVQKAL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDPQEDLKEALKDCFGEPSIE
                     N"
     gene            complement(11409..11636)
                     /locus_tag="ROE18_000872"
     CDS             complement(11409..11636)
                     /locus_tag="ROE18_000872"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HDX3651062.1"
                     /translation="MFKARNLDAQSFHNAKIFWDYFFNLCILWFFAFQVVVAEWFGMW
                     MSKVWKGLPDTIRLVTYMFLALIFISLKNDD"
     gene            complement(11752..>11926)
                     /locus_tag="ROE18_000873"
     CDS             complement(11752..>11926)
                     /locus_tag="ROE18_000873"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HDX3651063.1"
                     /translation="QKCFCISKMIRFSKIIILLTVVSLAGIVVFGNVTDYNSNFQFVS
                     HVMSMDTKPDLFR"
BASE COUNT         4264 a         2213 c         1512 g         3937 t
ORIGIN      
        1 cgctgctact ccagatcccc tatcgtctct aaaataattt ttaaaagaaa caatttcatt
       61 tgcatctttt aattcaaaat catcaaataa ttcatctaat tttttaaaaa ttttatcatc
      121 taaattataa gtataaagta taaatttata accattatct ataaaagatt ttatagataa
      181 aagctccatt aaaccaatac ctttataacc tctaggtgta taccaaaaac tactaatttc
      241 ttgcttcatc aacccttctt tgtaaatcaa attcttcttt ctctaaaacc tcaaacaact
      301 tcttatgaaa atcattattt ttaaagttta aacaaagctt ttttacaagt tcattgcttt
      361 tctttttatc ttgataattc tgccataaaa tttctttatt tttgttttca tatcttccat
      421 ttggattaaa ttcataatga taaatgcaag ttttaaaaac agctattttc tcacaaaaca
      481 taaaataaac ataacaaaaa agcacatctt cgccataact caaacgctca tctattttaa
      541 ttttttcaaa actttttaag ataatatctt ttctaaaaca cttagcccaa accgaccagc
      601 aaaaatgcct ttgtttgctt agaaattcta aaaattcttt ttgattaaaa aactcatctt
      661 gtttaaaacg ataaaattgc ttggttttta ccctatgtac aaaagcatca aagcaaagca
      721 aatcaaaacc ttttttcatc tctttaagcg ctattttaca agcatcaaga gttaaaaaat
      781 catcactatc taaaaacatt ataaaatcag aactagaatg caaaactccc aaatttctac
      841 ttgcaaaagt gcccaaattt tcttcatttt gaaagatttt tatccttgga tcttttttag
      901 caaattctaa aaccatattt aaactattat ctttactttt atcatcgata atcaaaattt
      961 caatatcttt taaagtctga tttatacaac tttgcaaagc tcttgagata aaattgcaag
     1021 aattaaaaag cgggattatg atagaaagtt gtggcatatt tttcctaaat tttgttaaaa
     1081 taataaaaac aattctatca aagtttagga aatttatgaa aatttttata catcttccca
     1141 cctggttagg cgatacggta atggcttcac ctgctttata cactataaaa gaacatttta
     1201 aagatgctca gtttatcctt tatggttctt ttgtttctac agcacttttt aaagaatttc
     1261 ctaattctaa aatcatcata gaaaataaac tatcccgtta taaacaagct ctatctttac
     1321 gcaaagaact tggtaaaatc gatcttagct ttgcttttag atctgcgttc tcttctaaga
     1381 ttatcttgca tatccttaaa acaaaacaaa gatatttttt tgacaaaaac aagtacaaag
     1441 aagaacatca agttttaaaa tacctttatt ttatagaaaa ttcacttagt ataaaagctc
     1501 attttaagga cttaaagctt ccctttaagc taaaatttca aaaccctctt atcttaagaa
     1561 atggtaaaaa aattctagga ctcaaccctg gtgcaagctt tggaagtgca aaaagatggg
     1621 atgcgagtta ttttgctaaa gtggctttaa atttcagcca aagtcatgat attttaatct
     1681 ttggtgcagg aaaagccgaa caagaacttt gtaatgaaat ttatcaaatt ttaaaagaac
     1741 aaaacataaa agtaaaaaat ctttgcaata aaaccaccat caaaaccctt tgtcaaaata
     1801 tcgctttttg cgatcttttc atcacaaatg acagtggacc tatgcaccta agtgcggttt
     1861 ataaggtaaa aaccgtagct atttttggcc ctacgaaatt tactcaaact tcaccttggc
     1921 aaaatgaaaa tgcaaaatta gtgcatttag atctagcttg tatgccttgt atgcaaaaaa
     1981 cctgcccttt aaaacaccac aaatgcatga aagatctaaa gcctgaaaaa gtgatagaac
     2041 aggctaaaaa tttacttaaa aactctcatc tatgatctga caaagtgtgt gtatgattaa
     2101 aatgtgcatt tcttgaattc tagctgtatc atcgcttggc acaacaagat tatgatcaca
     2161 aagcttattc atcattccac caccttttcc gctaagccct agacaaagca tattaagctc
     2221 ttttgctttt tttaaagctt ctaaaacatt agggcttttt ccgctcgttg aaataccgat
     2281 taaaacatcc ttttcattcc ctaaagcttc cacttgtctt gaaaaaacaa actcaaaacc
     2341 atagtcattt cctatggcac taagtgctga agtatcggtt gtaagtgcta tgcctgctaa
     2401 agccttgcgt tcttttttat aacgcccgct aagttcagcc gcaaaatgct gagcatcagc
     2461 cgcacttcca ccgtttccgc aaattaaaat tttaccacct tttttaagac actcacacaa
     2521 aagctcacct actttagcga tttgtccttt taaaatttcg cttgcttgaa caattttttg
     2581 atgttcttgc cattcttttt ccactaaatt tatcattttt tatccttaat cttttctatg
     2641 atcttacttg tactaaatcc ttcttcaaag tcgattaatt caacccttga aacgatatct
     2701 gcacctacaa caagtttatc tttataatca gctcctttaa ccaaaatatc aggctttaaa
     2761 aagcttataa gttctaaagg tgtgtcttca tcaaaaatca ctacaaaatc aacaaaataa
     2821 aaagctgcca acatacaagc tctttgaaat tctgaattta caggacgact ctcgcctttg
     2881 agtcttttca cactcgcatc tgagttcaaa cctacaatca aaacatcgcc caatctttta
     2941 gctttgtcaa ggtattttat atgtccaaaa tgcacgatat caaaacaacc atttgtaaaa
     3001 acaatctttt tattattttg tttcaaaagt accaaaagtt cttctttgct tttgattttt
     3061 ttctcaaaat ccacgcgctt aaaactttta atctcatcaa aactcacact cacgctacct
     3121 attttactta ccacaacagc tgcggcttca ttggcaagtt cgcaagcttt aaaaatttca
     3181 atttcatttg ccaaacaaaa agccaaaact gcgatcacac tatcgcccgc tcctgttaca
     3241 tcataaacct ctaaggcttt agcaggtgcg attttcaaac cctcatcaaa aagtgcaatt
     3301 ccagcttctg aaagagtgat gatagaataa cgcaaagaaa aatcttcttt taattttttg
     3361 atgccttttt ctaaattttc accctctaaa ttttcaaatt tcaaagcctc taaagcttct
     3421 tttttattag gcgtgagtaa ggttgcaccg ctatatttac taaaatcact gcctttagga
     3481 tcaactaaaa caggaatatt taaagcctta gcttttttta tcacagcctt acaaacttta
     3541 ggggttaaaa cacctttggc ataatcgctt aaaaccacag ccttaaagtc tttaatcttt
     3601 tcatcaaaca aagcaataag ttcattttca agcaaaattg cacttatgtc ttcttcatct
     3661 agtcttaaaa cctgctgatt gtgtgccata atgcgatttt taaaaggggt tttgcgtcct
     3721 ttttggatca aaaattctcc ttttaaattt tcttgtaaaa atttcccact cttatcatca
     3781 cccacaacac cgagcgcaaa aacatcagct cccaagcttt ttaaatttgt ataaacattt
     3841 gcagccccgc ctaatctttt atcttcttta agggttttag ctaccaaaac aggggcttca
     3901 ggactgatac gcgaacaatc acaccaagtg taattatcca ccataaaatc ccctataatt
     3961 aaaattttag gtttttgctg acttaaaaac tcaagcattt acttcctttt caaaaagtct
     4021 ttttatctcg cctaaataat cttttatacc ctcttctaaa gtgaattttg gccgataatc
     4081 ccaagtttga tctagttttg cctcggtatg aaattgataa gattttacat aaggatttgg
     4141 gatatattcg caaggcaaat cagtctttaa ctctttttgc aaaatatcaa ctatatcttg
     4201 aaaagttctt gctttaccgc tgcctacatt ataaacccca cattttgagt caagggcgat
     4261 taaattggca ttaataacat ctttaatata agtaaaatct ctataaattt gatcacttcc
     4321 ttcaaacaag cgtggatttt ttcctgctaa aatttgatgg ccaaattgta aaaccataga
     4381 agcggttttg tttttgtaaa attcgccttt tccataaaca ttaaaatatc taagtcctac
     4441 taaatgggct ttatcgtagt attttttcgc taacttatcc atcatcaatt ttgaaaaagc
     4501 ataaggattt tttggttctt catctttacc tacggtttgc ggactttttg catcgccata
     4561 aactgaagct gaacttgcat aaataagctt tgcattaaga tctatgctaa gttctataaa
     4621 atctttaaaa gtatttaaat tggtttgtaa aaccttagtt tgatcaaaaa ccgtagtgtc
     4681 tgaaattgct gcttgatgaa aaataatctc tggcttaaaa tcttcaatct tttttaaaac
     4741 tttttcatca ttaatatcgc ctgcaaaaag ttctccatca aattcaagta aatttttaaa
     4801 atgcccaaaa ctttgcaaat ttccattttc aaaagtcgca ctactacgca ttttatcgac
     4861 gattaaaatt tcatgttttt cttgcaaatt taaagccagt tgcgaaccta taaaccctgc
     4921 gccacctgtg attgctattc tcatttaaat gtccttttct ttaaaaaagc tcaaaatttc
     4981 ttttaaattt ttaaattgtc taaaaaaatc accttctttt ttttcttcat tcactaaaat
     5041 caaagtgcca atatcagcat ttaatcctgc ttgcatatcg cttagattat ctccgataaa
     5101 gatagaattt ttcatatcta aatcaaactc atcttttgct tttaaaagca ttcctgcttt
     5161 aggtttgcga cactcacaac cttctaaatg cggacaatga taaattttat caatttttat
     5221 atcttgcttg gcaaattctt taagcatata atcacaaagc ttaaaaaaat cactttcttt
     5281 ataatatcct cttgcaatgc ctgattggtt tgtcgctata aaaagcaaat aatttctagc
     5341 taaaaaatat ctacaaagtt caaaaattcc atcacaaaat tcgaaatctt ctattttata
     5401 aacatatttt ttatctatat taatcacacc gtctctatct aaaaataatg cttttgtttt
     5461 cataaaaaca ttataatata gcttttttaa aaagaaaata aacattatct ttaatttctt
     5521 aagattttta ttaaaaataa agatatataa tacctagcaa tctaattttt actaaggaga
     5581 aaacaaatga aaaaattatt agtagtttct gctttggcat gtcttggtgt ttctgctttt
     5641 gctgcagatg gtgctacact ttttaaaaaa tgcgcagtat gccatggtgc aaatgctgac
     5701 aaagtttact taaacaaagt tccagcttta aaaactcttt cttctgctga aagacttcaa
     5761 tacatgaaag aatattcaga aggtaaaaga aatgcttatg gtcaaggtgc gatcatgaaa
     5821 cttaacctta aaggtttaac tgaagaagat tttaaagcta tcgaagctca tattgaaact
     5881 ttaaaataat ttctaaaaaa ggcttttctt tttaagaaag ccttttttta tccaaagctt
     5941 cttttttacg tctttctaat tctatagcat cacgtaaaga atcctcatca tcatttaaag
     6001 tagtaaattt ataatcatca tcaaattgct tatttttaat cccccaaagc aaagttgcca
     6061 aaatgataaa aaacgctaag atagaaactc ctatcatcat catgattata ctattcattc
     6121 tttaatcctt aaagcattta aaacgactat tatactacta aaagacatag aaatagcagc
     6181 aaataaagga tttatcatac ccaaaaaagc caaaggtatg gtgcaagcat tataaaacaa
     6241 agaaaaagca agattttgct tgataatttt aaaggtgttt ttagataatt tgatggcttt
     6301 ttttaaagaa agcaagtcat ttttcaaaag caaaacatca ctactttcta tagctagatc
     6361 acttccttct cttaaagtca ttgaaacact tgcgtatttt aaagctagtg catcatttac
     6421 cccatcacct acaaataaaa ctttgtaatt tttacttaaa ttttctatag ttttcatctt
     6481 atcttcaggc aaacaagaag cttgataatt ttgaatttct aactttttag cgattttttc
     6541 cactgctttt tgatgatcgc cactgagtat cattaattct ttcttttctt ttttaagata
     6601 agcgataagc tcttttgcac cttctcttaa aacactatca aactcaaaaa aagctaaaat
     6661 tttaccttcc ttggcaaaaa taaaatgcgt attatcaaat tctttagcca caataccctt
     6721 ttcttgcaaa aatttagaac ttccgcctaa aagcaaccct tcatttaact cagcacttaa
     6781 acctttagct tgaatactcg aatgcttttt aaaatccaaa tttaaatcct tagctccttt
     6841 ttgctttaaa tataacacaa tattttgaga gataggatgt ttagaaagtt ttacaaaatt
     6901 ataaagctcg tttaaatcaa gcgctttatc taaaaaaacc tctttaagtt caagctctat
     6961 tttggttaaa atacccgttt tatcaaacac cacacaatca catttgctta aatcttctat
     7021 cacgctagaa cttttaaata aaatatgctt ttttaaagcc ctacctaaag ccacaagatt
     7081 gctcactggc gttgctaaag ccaaagcaca aggacaagcg ataatcaaaa ctgcaatcgc
     7141 attgactaaa gaaatttcga aactctcttc tttataaaaa aaccaaaaag caaaacaaat
     7201 aaaagcgatc aataaaaccg ttctagaaaa ataagccaaa agactattga ccaaactttc
     7261 aagttttgct tttttagaac ttgcaagttc taaaagctgg ataatttgac tgagttttga
     7321 atccttgtaa agctttgttg cttcatactc cacacttcca tcaagcacta tacaagctga
     7381 aaaaatttca tcttcttttt gtatgagttt tggggtattt tctccattta aagaagaagt
     7441 atctacgctc atttcaccac ttttacaaat cccatcgatt aaaattttat ctccagtttt
     7501 aagcaaaatt ctatccccca aacaaacctt ttgcacttct ttagagacaa attctttacc
     7561 attgaaaact aaaacttcat tttgcaaaaa atcattaagc ccatctatag tatctaaagc
     7621 acgctttttg ctaaacatct caagatattt acctataaaa acaaagcaaa ttatcatcgc
     7681 cacagagtca aaatacacct cccctaccct aaaaaacatg gcccataaag aataaacata
     7741 agccaaactc gctccgctaa tcaccaatac atccatattt aaactatgca tttttaaagt
     7801 tttaaaagca cttttataaa aatgagatcc cgtataaaaa agcacaggag aacaaaggat
     7861 aaattcagca aaatttaaaa tatccttagt gtccttatcc ataccgctaa aaaatcctgc
     7921 gtattttgcc actgctatcc acatgatatt catcacacaa gctatagcca caacaagctt
     7981 agaataaaat tcccttttta gtaaatccgc tttttttgaa gccttgctcg catcataagc
     8041 actcgcttta tagcctatgc tttcaataag tcttaaaatt tgcaccaaag aaatgctttg
     8101 ctcatcaaaa acaatgcgtg ctttatggtt taaatgatta atatcaagtt ctaaaattcc
     8161 ttcttgtttg gttaaaattt tctcattaag ccacacacaa gctgcacatt ctataccgtg
     8221 tatcatgaga taaatttcac taaatccttc tttggtttta gtgataaact catcataatt
     8281 tttcatttca ttttgaaaat ttacagggct taaagtttga tttccaagct tttcataaaa
     8341 ctcatctaat ccactttcat gcaaaatttc ccaaacgctc tcacaacctt tacaacaaaa
     8401 aaatttaccc ttatactcta tcatttgggc ttgtttataa tcaagtttgc aatgttcaca
     8461 tttcataatc attctttaaa aaaatatttt ttataattat aaacaaattt gacaaaaagt
     8521 gcattttttt attaaaatca cattttacaa aaattattct gctaaatctt acgaggactt
     8581 atggaaaaag aaaaaaaaca acatcaaaga acccacgttc cagtggaagg ttataaaatc
     8641 gaagaattaa aattattaga tttagaaaat ctagttaaaa tcgccaatga atgcgaaatc
     8701 gaaaacccaa gagaatttcg ccgccaagaa cttatttttg aaattttaaa agcacaaaca
     8761 aaaaaaggcg gttttatact ttttacaggg attttagaaa tttcttccga aggttatggc
     8821 tttttaagag gtatggactc taatcttagc gatagtgtta atgacgctta tgtttcaaat
     8881 tcacaaatta aaaaatttgc tctgcgtgta ggcgatatcg ttacaggaca agttagagaa
     8941 ccaaaagatc aagaaaaata ctacgctctt ttaaaaatcg aagcgatcaa ttatctgcct
     9001 ttacaagaag ccaaagaaag acctttattt gataacttaa cccctatttt tccaacagaa
     9061 aaaatcaaac tcgaatacga tgcaatgaag cttacaggtc gtgttttgga tctttttact
     9121 cctataggaa aaggacaacg cgggcttatc gttgctccac cacgcacagg taaaacagag
     9181 cttatgaaag aacttgctac tgctattgca aaaaaccacc cagaaatgca tttaatcgta
     9241 cttttagtcg atgaaagacc tgaagaagtt accgatatgc aaagatgtgt aaaaggcgaa
     9301 gtttttagtt ctacttttga tttacctgct tataatcatg tgcgtgtagc cgaactcgtg
     9361 atagaaaaag ccaaaagaat ggtagaaaca ggcaaagatg ttatcatctt acttgatagt
     9421 atcacaagac tggcacgtgc ttataacacc gcaactccaa gcagtggaaa agtcctaagc
     9481 ggcggggtgg atgctaatgc cctacacaaa ccaaaacgct tctttggtgc agctagaaat
     9541 atagaaaatg gaggctcttt aaccatagtt gctacagctt taattgatac aggttcaaga
     9601 atggatgatg tgatttttga agaatttaaa ggcacaggaa atagcgaaat agttcttgat
     9661 agaaatatcg ccgatagaag aatttatcct gcgattaata tcatcaaatc aggaacaaga
     9721 aaagaagaat tgctccaagg cgtagcaaat cttcaaaaaa tttgggcaat ccgttcagcg
     9781 atttctcaaa tggatgatgt tgaagcgttg aaatttttat attctaaaat gcttaaaacc
     9841 aaagacaatg tagaactttt atctataatg aacgagtaga aaatgcttca agctttagcg
     9901 attaaataca gaccaaaaac ctttgatgaa ctcataggac aaaagacagt tagcgtaagt
     9961 ttaaaatacg ccctaaatca taatcgctta gctcatgctt atcttttttc aggacttaga
    10021 ggaagtggaa aaacttcgag tgctagaatt ttttctcgtg ctttagtttg cgaacaagga
    10081 ccaagtgata ctccatgtgg cacttgcaaa cactgtcttg cagcacttga aggcaaacat
    10141 atagacatta tagaaatgga tgctgcaagc aaccgtgggc ttgaagatat acaagcctta
    10201 atcgaacaaa ccaaatacac cccttctatg gcaagattta aaattttcat cattgatgaa
    10261 gtacatatgc ttaccccaca agctgcaaat gcgcttttaa aaaccttaga agaaccccca
    10321 agttatgtta aatttatact tgcaaccaca gatcctttaa aacttccagc tactgtgctt
    10381 tcaagaacac aacattttcg ctttaaacaa attccacaga gtgaaatttt aaatcatctt
    10441 aaagaaattt tacttaaaga aaatgttaaa tttgaagaag aagctttaaa atttatagca
    10501 agaagcggca atggatcttt aagagatact ttaaccttgc ttgaccaagc tattattttt
    10561 tgtcaaaatg aaatcagcat tagtaaaatt acagatatgc taggattttt agatcctcaa
    10621 aaaatcaaag ccttttacca ggctatctta acaaaagaca aggaaaaagt ttttgtgtat
    10681 ttagaggaat tacaagacta tgaagcctca agcgtgattg atgaaatgct tttttattta
    10741 aaagaaagtt tttttgcaaa aagcacagaa ttttctactt taatttatga aagatttttc
    10801 cgtattttat caaaagctaa gaatatgctt tgcgatgatg atggctttac gctttgtgtt
    10861 atggctttta tgatgatgga agcaagtcat ttaaaagaaa ttgacgcaca aatccaagaa
    10921 atcaaacaag aaaatacaac aaatattata cctaggatca caccttctcc tatcatacct
    10981 catcttgaga aaaaaacaga aaaaaatgct tatgaaatct tgcttgatag tatttatgat
    11041 agggattttg atcttgcaga atgctttaaa caaagtacaa attttattag ttttgaaaac
    11101 aatactttaa atataaactc aaacgcacaa ggacaaaatc gcgatacact caataaaggt
    11161 tttaaactca tacaagaact ttttaaagct aaatttggag aaaatgctaa aattaatgtg
    11221 caaaaagcac taacaattga tgaaaataag cttcaatcct taactcaaga attaccaaac
    11281 aatgaaaata aaaacataga tattcaaagt tctattaata tgcttaaaga aggggccaaa
    11341 aaatttgacc cacaagaaga tcttaaagag gctcttaaag attgttttgg agagcctagt
    11401 atagaaaatt aatcatcatt tttaagagag atgaaaatca aagctaaaaa catataagtt
    11461 accaatctta tagtatcagg taaacctttc caaaccttac tcatccacat tccaaaccat
    11521 tctgcaacaa ctacttggaa ggcaaaaaac cataaaatac acaagttaaa gaaataatcc
    11581 caaaaaatct tagcattatg aaagctttga gcatctaaat ttctagcttt aaacatatca
    11641 taagcacctt ttttagagct gttaaggcaa taaaagtttc aaaaagaata attgctatat
    11701 agcctatatg ataaatcacg ggagaagtaa tagccattat aaactacagc attacctaaa
    11761 taaatcaggc tttgtatcca tactcatcac atgcgaaaca aattggaaat tagaattgta
    11821 atctgtcaca tttccaaaaa ccactatacc tgctaacgat acaacggtaa gcaaaataat
    11881 aatttttgaa aatctaatca ttttgcttat gcaaaaacat ttttgt
//
LOCUS       DAPOLW010000046        11787 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.046, whole genome shotgun sequence.
ACCESSION   DAPOLW010000046 DAPOLW010000000
VERSION     DAPOLW010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11787
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.046"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..310
                     /locus_tag="ROE18_000874"
     CDS             <1..310
                     /locus_tag="ROE18_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HDX3651064.1"
                     /translation="CELLNSNLSGFNLKKIKKPIIKKEELKLDLNYSKMYAKLGLNTK
                     DQQGLMAYLMNVFNELELVLCAAKIQTIRQRTRNIFIFQKNEKLEHSEQKLVNLLISE
                     "
     gene            315..2111
                     /gene="glmS"
                     /locus_tag="ROE18_000875"
     CDS             315..2111
                     /gene="glmS"
                     /locus_tag="ROE18_000875"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HDX3651065.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAVGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFEFYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDPNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDILKSLCFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGDEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDFIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            2114..5239
                     /locus_tag="ROE18_000876"
     CDS             2114..5239
                     /locus_tag="ROE18_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDX3651066.1"
                     /translation="MKKFFCLTLVCKLFALSEFELHHIDKVHKLGYSGDTIIIGVADD
                     AFNQDHISLKDKILKSTYPTDTAGKQLIPDLKKSTHGSHVAGIAVGAKIGDSKPYGVA
                     YGAKFYGAGVFPNGSYTQIPDIYNFFKDVSIINNSWGINFYPYFNLKASNSGLVDCTQ
                     TNQGTSYNICNTPLEYVMKADKVANDMMRLSKDKGVLNVFAAGNEGILSPALHAILPS
                     YDESLRAWLAVGALDANEITLESDGTLIIKSQGLADFSNGFKGATNFSLVAAGVNINN
                     VDSSTNDKFTKKSGTSMAAPMVSGTAALVKQNFPFLDGKQIADILLSTANKNYKAPKF
                     TVKQVTDGTNQPKFLIVYISQDPPRIEDEIKRDLKQLYNGIQVQVNGQWIDYSDYIWD
                     NRDSAQSQKLNTSTISSINGVVRVEKEELFGQGILDAQKALKGLSILDANRLSDQDVL
                     KYEQEPNTAYYTINTAGYDAEFSNDISQRKWDESTHLSSAINKPTHLANLNIGLSKEG
                     EGILIISGQNTYEGATLIKQGELKLKGKVKNNAYVEQKAILSGNGIVGQNLNNKGIVR
                     PGNEDLNDLTVQGTYTQEGVDSKLQLDFGNYKNSKLIAKTYDIKSGNLEYIPLPKYYI
                     LNKPVKINLGDLEKSLSSFNHVLIQNTYALNFDFILSDDLVSINKTLIKPNLKPNAYE
                     IPNTSLGNALRQLRSRADLSQTYQEFFASLDNGIDVKTKLNRIEGSGYLSTFSNHNQS
                     NLMQNNMLFTLHPLNINNFAQNNNILLASTYLPRIFSNEEYFWHLTPSYKYYKDKDFS
                     GQKTGANISLGENFSSGFLAYALSLSSAKFNFNNGSDLKSYNMDLLLNYNHDLDFIKI
                     LSGLGIGVGFNTLNRFVVEQPIEGKYKTLQTSAQLGVTKDIILGQDFIFNPLMYFTHS
                     FFYQEDFKENKSPFAKNYESLKHHSINANLGFNLAKNIEQDDYQASFSTFVIFEKRIY
                     GRTLENKASFVDFPITFIQKYKLKDNILSQGFNSEFLYKNNVFWQFMLMNRFSHNAYE
                     LHLMSSVGKRF"
     gene            5295..6686
                     /gene="fumC"
                     /locus_tag="ROE18_000877"
     CDS             5295..6686
                     /gene="fumC"
                     /locus_tag="ROE18_000877"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HDX3651067.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDSIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFISSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRAKIDHNLHNSLMLVTALNPYIGYENAAKVAKNAHKKGISLKESAMELGLVSEEDFN
                     KFVDPTKMIGPKA"
     gene            complement(6716..7759)
                     /locus_tag="ROE18_000878"
     CDS             complement(6716..7759)
                     /locus_tag="ROE18_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDX3651068.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTACMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITI
                     FYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASNNLNSALVIFIYSVIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(7763..8770)
                     /gene="ruvB"
                     /locus_tag="ROE18_000879"
     CDS             complement(7763..8770)
                     /gene="ruvB"
                     /locus_tag="ROE18_000879"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HDX3651069.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALKLNYEKTLFE
                     E"
     gene            8861..9271
                     /locus_tag="ROE18_000880"
     CDS             8861..9271
                     /locus_tag="ROE18_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HDX3651070.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            9272..9630
                     /gene="ssrA"
                     /locus_tag="ROE18_000881"
     tmRNA           9272..9630
                     /gene="ssrA"
                     /locus_tag="ROE18_000881"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(9715..>11787)
                     /locus_tag="ROE18_000882"
     CDS             complement(9715..>11787)
                     /locus_tag="ROE18_000882"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HDX3651071.1"
                     /translation="PDMFINRELSWLRFNSRVLDQCSKNLPLLEKLKFIAIYCTNLDE
                     FYMIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLERYFNEITSELEK
                     ENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLNNLSFSLAVKICD
                     KAHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPGYKLLASAAFRVT
                     RNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVEFLNTHMKIFHKD
                     VYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFDAVEKEDILIIQP
                     FESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASDGKQVTVMVELKA
                     RFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLKFYMHLSTGNYNA
                     SSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPNQIKEKVLEMIRI
                     ETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCLKPDEEYSKNIRV
                     RSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIYDERSKAKLAQFL
                     RLQLSDNVLAYELKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTLKKDTDQSRATHL
                     ASKLFKEN"
BASE COUNT         4054 a         1676 c         2084 g         3973 t
ORIGIN      
        1 ttgtgagctt ttaaattcaa atctttctgg ttttaatttg aaaaaaatta aaaagccaat
       61 cattaaaaaa gaggagttaa aattagactt aaactattct aaaatgtatg ccaaattagg
      121 tcttaatact aaagatcagc agggtttaat ggcgtatttg atgaatgttt ttaatgaact
      181 tgaacttgtt ttatgtgcag caaaaattca aaccataaga caaaggacgc gtaatatttt
      241 tatttttcaa aagaatgaaa aattagaaca tagcgagcaa aagttagtta atttattaat
      301 aagtgagtaa aaaaatgtgt ggaatcgtag gctatatagg aaataatgaa aaaaaacaaa
      361 ttatactaaa tggacttaaa gaattagaat atcgtggcta tgatagtgcg ggtatggcag
      421 tgatgcaaga aggcgaactt agttttttta aagctgtagg aaagcttgaa aatttggcga
      481 ataaatgcac agattttgaa agtcaaggtt atggttttgc tgtaggtcat acaagatggg
      541 caacccatgg taaacctact gaaatcaacg cacaccctca tttaggacag tattcttgcg
      601 tgattcacaa tggtattata gaaaattata aagaaattaa agataaactt gaaaaagaag
      661 gcgtgagttt tttaagtcaa acagatacag aagtgattgt tcagcttttt gaattttatg
      721 caagaaattt gggagttttt gaagcttggc aaaaaaccat caaagaactt cgcggtgctt
      781 ttgctacttt gttagtaaca aaaaaagatc ccaatcatgt gtattttgca aaaaatgctg
      841 ctcctttgat tatcggtaaa aatgcaaata aagaatggta tttttcttca ggtgatgcgc
      901 ctttgatagg aagttgtgat gaggtaatgt atcttgaaga tttaagcttg ggatacgcga
      961 gtaaagatga gcttgtcgtt tatgaaaatg atattttaaa atcactttgt ttttctaagc
     1021 tttcaggtga taaggcttat gcaaaaaaag acggctttcg tttttttatg gaaaaagaaa
     1081 tttatgaaca aagtcgcgtg atgagtgaag ttttaatggg gcgtattcaa ggcgatgaag
     1141 tcgtttttga tgagctaaac aatgaagatt taagtcaagt agatgaaatc acgctttgtg
     1201 cttgtggaac aagctatcat gctgcaatgg caagcgctta tttgtttgaa agaattgcta
     1261 aagttaaagc taaagtagaa attgcaagtg aatttcgata ccgtgaagca attataaaaa
     1321 aagattcttt atttatcgtt atttctcaaa gtggagaaac agcagacact ttagaggctt
     1381 taaagattgc aaaagagcag ggtgctaaga cttttgcaat ttgcaatgtg gataattcta
     1441 atatagtgcg tttagcacat ctaagtcttt taactcgtgc gggcatagaa aaaggagttg
     1501 cttcaactaa agcttttgct actcaggttt taacactttg gatgcttgct atttttatgg
     1561 cacaaaaaag aaatttaaat gtttctgctg aaattaaagc acttttgcat actccaaatt
     1621 gcgtgagtgt aaaacaggct ttacatgaaa aaattcatcg tttatccaag cgttatttag
     1681 atggacatgg ctttttcttt ataggcagag atgtgtttta tcctttggct ttagaaggag
     1741 ctttgaaact taaagaatta tcttatcttc acgctgaggg ttatcctgca ggagagatga
     1801 aacatggccc tattgctttg gctgattcta agctttatac tatagcttta atgccaaagc
     1861 acatgcttta tgaaaaaaca aaatcaaatg ttgaagagct tattgctagg gattctacag
     1921 tgcttagcat ttcaccttta gaatttgatt taagtgatga ttttataaaa accaatgagc
     1981 aagatcatta tatgtgtgaa ttttttgaaa tgatggtcat tactcaactt ttggcgatgg
     2041 aaatttccat aagacttggc aatgatgtgg atatgccaag aaatttggct aaaagcgtaa
     2101 cggtagaata gaaatgaaaa aatttttttg tttaacttta gtttgtaaac tttttgcttt
     2161 aagcgaattt gaacttcatc atattgataa agtacataag ctagggtata gtggagatac
     2221 tattataata ggtgtagccg atgatgcttt taatcaagat catattagtt taaaggataa
     2281 gattttaaag tctacttatc ctactgatac agctgggaaa cagcttatac ctgatttgaa
     2341 aaaatcaaca cacggaagtc atgtagcagg tatagctgtt ggagcaaaga taggcgatag
     2401 caaaccttat ggagtggctt atggggcaaa attttatgga gctggggtgt ttccaaatgg
     2461 ctcttacact caaattcctg atatttataa ttttttcaaa gatgtgagta ttattaataa
     2521 tagctggggt attaattttt atccttattt taatcttaag gcttcaaatt ctggattagt
     2581 agattgtact caaactaatc aagggacaag ctataatatc tgtaatactc ctttggaata
     2641 tgttatgaaa gcagataagg ttgctaatga tatgatgagg cttagcaagg acaagggagt
     2701 attaaatgta tttgctgctg gtaatgaagg aattcttagc cctgctttgc atgcgatttt
     2761 accaagttat gatgaatctt taagagcttg gttggctgtt ggagctttgg atgcaaatga
     2821 gattacttta gaatcggatg ggactttaat aattaaaagt caaggtttgg ctgattttag
     2881 taatggtttt aagggagcta cgaatttttc tttagttgct gctggagtaa atattaataa
     2941 tgttgattca agcactaatg ataagtttac aaaaaaaagt ggaacttcta tggcagcacc
     3001 tatggtaagt ggaacagcgg cactggtcaa gcaaaatttc ccctttttgg atggtaagca
     3061 aattgctgat atactgttaa gtacagcaaa taaaaattat aaggctccaa aatttactgt
     3121 taaacaagta accgatggaa caaatcaacc taaatttctt attgtgtata tttcgcaaga
     3181 tccacctagg atagaagatg aaataaaacg ggatttaaaa cagctttaca atggaataca
     3241 agttcaagtt aatggacaat ggattgatta tagtgattat atttgggata atagagatag
     3301 tgcgcagtca caaaaactta atacttctac tattagttct attaatggag tagttagagt
     3361 tgagaaagaa gaattatttg gacaaggaat tttagatgca caaaaggcgt taaaaggact
     3421 gagtatttta gatgcaaaca gactcagtga tcaggatgta ttaaaatatg agcaagaacc
     3481 taatacagct tattatacta taaacactgc aggttatgat gctgaatttt ctaatgatat
     3541 tagtcaaaga aaatgggatg aaagtactca tttatcaagt gctattaata aacctacaca
     3601 tttagctaat cttaacatag gattatctaa agaaggtgaa ggtattttga ttatcagtgg
     3661 tcaaaatact tatgagggtg caactttaat caaacaagga gaattaaagc ttaaaggaaa
     3721 agttaaaaat aatgcttatg tagaacaaaa agcaatatta agcggtaatg gtattgtagg
     3781 gcaaaattta aacaataaag gcatagttag acctggaaat gaagatttga atgatttaac
     3841 cgtgcaagga acttatactc aagaaggagt tgactctaaa ttgcaacttg attttggtaa
     3901 ttataaaaat tctaaactga ttgcaaaaac ttatgatatt aagagcggga atttagaata
     3961 tattccttta cctaaatact atatcttaaa taagccagtg aaaattaatt taggagattt
     4021 ggaaaaaagt ttatcatctt ttaatcatgt tttgatacaa aatacctatg ctttaaattt
     4081 tgattttatt ttaagtgatg atttagtgag tattaataaa accttaataa aacctaattt
     4141 aaagccaaat gcctacgaaa ttcctaatac aagcttggga aatgctttaa gacaattgcg
     4201 atctagggca gacttgagtc agacttatca ggaatttttt gcttctttag ataatggaat
     4261 agatgtaaag actaaattaa atagaataga aggttcaggg tatttaagca cttttagtaa
     4321 tcataatcaa tctaatttaa tgcaaaataa tatgttattt acccttcatc ctcttaatat
     4381 taataatttt gcacaaaaca ataatatctt acttgctagt acttatttac ctagaatttt
     4441 tagcaatgaa gaatattttt ggcatcttac tccaagttat aaatactata aagataaaga
     4501 tttttcaggt caaaaaacag gtgctaatat ctctttagga gaaaatttct catcaggctt
     4561 tttagcttat gctttatctc tttctagcgc taaatttaat tttaataatg gtagtgattt
     4621 gaagagttat aacatggatt tattgcttaa ttataaccat gatttagatt ttataaaaat
     4681 attaagtgga ttaggtatag gtgtaggatt taatactctt aatcgttttg tagtagagca
     4741 gccaattgaa ggcaaatata aaacattgca aacttcagcc cagcttggtg taactaaaga
     4801 tattatttta ggtcaagatt ttatttttaa tcctttaatg tattttacac atagtttttt
     4861 ttatcaagaa gattttaaag aaaataaaag tccttttgct aaaaattatg aaagtttaaa
     4921 acatcatagc ataaatgcaa atttaggttt taatcttgct aaaaatatag agcaagatga
     4981 ttatcaagct tctttttcta cttttgtaat ttttgaaaaa agaatttatg gaagaacttt
     5041 agaaaataag gctagttttg ttgattttcc tattactttt attcaaaaat ataaattaaa
     5101 agataatatt ttaagtcaag gttttaattc agaattttta tataaaaaca atgtattttg
     5161 gcagtttatg ttaatgaata gattttctca taatgcctat gaattgcatt taatgagttc
     5221 agtaggaaaa cgtttttgaa agtatttatt tttttagctt ataataaata aaattttaat
     5281 caaaggaaaa aattatggaa tacagagttg aacatgatac catgggtgaa gttaaggtcc
     5341 caaatgacaa atattgggga gctcaaactg aaagaagttt tgaaaatttc aaaatcggtt
     5401 gcgagaaaat gccaaaggtt ttaatctatg cttttgcaaa tcttaaaaaa tctttagctt
     5461 tggtcaataa caaacttggc aaacttgatg atgctaagaa aaatgctata gttcaagctt
     5521 gcgatgagat tatcgcaggt aaatttgatg ataattttcc acttgcgatt tggcaaacag
     5581 gttcaggcac acaaagcaat atgaatatga atgaagttat tgcaaatcgt gccactgaaa
     5641 tcatgggcgg ggattttcgc aaagaaaagc ttgtacatcc aaatgatcat gttaatatga
     5701 gtcaaagttc aaatgatact tttccaacag ctatgagtat cgttgcggtt gagcaagtag
     5761 agaaaaagct tatccctgcg cttgatgagc ttattgcaac ttttgaaaaa aaagtaaaag
     5821 aatttgatag tattatcaag ataggacgca cgcatttaca agatgctact ccacttactc
     5881 tagcacaaga atttagtgga tatctttcta tgcttttgca ttcaaaagag caaatcatcg
     5941 cttctttacc aactttaaga gaacttgcca taggaggaac cgcagtagga acagggctta
     6001 atgcgcatcc agaattaagc caaaaagtaa gtgaagagct aactcaactt ataggtacaa
     6061 aatttatttc aagtccaaat aaatttcatg ctttaacaag tcatgatgcg attaatttta
     6121 ctcatggagc tatgaagggt ttggctgcaa atttaatgaa aattgcaaat gatataagat
     6181 ggttagcttc aggcccaaga tgcggtcttg gtgagcttat catccctgaa aatgagccag
     6241 gaagttcgat tatgccaggt aaggtaaatc ctacccagtg tgaagctgtt actatggttg
     6301 ctgtacaagt gatgggaaat gatgcagcta tcggatttgc agcaagtcaa ggaaattttg
     6361 aacttaatgt gtttaagcct gtgattattt ataatttctt gcaaagtctt gatttgttag
     6421 ctgattctat gcattcattc aatatccatt gtgctgtagg catagaacca aatcgtgcaa
     6481 aaatcgatca taatcttcat aattctttaa tgctagttac cgctctaaac ccatacatag
     6541 gttatgaaaa cgctgctaaa gtagccaaaa atgcccataa aaaaggtatt tctttaaaag
     6601 aaagcgcaat ggagcttggt ttggttagcg aagaagattt caataaattt gttgatccta
     6661 ctaaaatgat aggcccaaaa gcctagaaca taaaacttgc cttttttaag gcaagttaaa
     6721 ttaaattctt atcttttaaa atcacataca ttcttaaagt tgatacaaaa aaagttaaaa
     6781 tcgcaggacc tagtataata ccccaaaaac caaaggttga aattcctgct atcatggcca
     6841 agaaaattaa aagttcgttg attttagtgg gagtttttac aagttttttg ttgatccatt
     6901 tgatgattaa aggtttgatt aaagtatctg ctataaaaga aattacaatt acagaataaa
     6961 taaaaataac aagagctgag ttaagattgt ttgaggcaaa ttcataaaga cttacaggca
     7021 cataaattaa agctcctcct atagcaggta tgagagaact tacagcaaaa attactccca
     7081 ttaaaattcc atcataacca taaaatattg tgattaaacc aaaaagtgca ccttgaaata
     7141 ttgctacaat taccatagag taaagcacaa cagccataac attacccact tcgcttaaaa
     7201 catcatcgag ttctttttta tcaataggaa tgatggattt aagatagata acaagttctg
     7261 ttccatatag atttgcaaag aaataaaaca cacaaattaa aaccatatct ataagaaatt
     7321 tagctcctga ttttgtaaaa cttgaagcat aacttagaat ttgtttagaa atactattta
     7381 aatctataga agctaaaaat tctttaattt taggttctaa aaaattaaag ctttcaggca
     7441 aggtgaattg atagtttttg acataatcaa gtgtttgtgt aactaaatta atatcaaaat
     7501 tctttaaagc tttggcaagt tctatcatag cataaacaaa aggtgcaaag aaaagcaaaa
     7561 ccatacaagc tgttgtaaga atggaagcta aaaatttatg tcctttagta agatttaaaa
     7621 attttgcatt gatgtttgag gtagctaccg ccattaaact agctatgata attacaagta
     7681 aaaaaccttt aaaaaggtaa agtaaaagaa ataaaatgac taaaataaag cttataagaa
     7741 agaattttcc attttgcaaa atttactcct caaataaagt tttttcatag tttagtttta
     7801 aagcactata actttttgca cttgctatac gcccttttgc agtgcgttct atatagccat
     7861 tagctaataa ataaggctcg attacatctt ctatggtatt ttcatcttca cttaaagccg
     7921 cagcaatact tgcaagtccg ataggttttt gtttggcagc ggttaaaagt tcaagatatc
     7981 ttaaatccat cgcatcaaaa ccaagctcat taactcctaa agaatttaag gcctcattag
     8041 ctcttttttc tgtgataatc tcttcatcat taacatcggc aaaatctcta actcttttta
     8101 aaagccttag agctattcta ggagttgaac gacttctttt agcgatctca agtgcggctt
     8161 tttcttcgca agttttatta agttttaaag ctgctttttg caagattagg gcaagttcgc
     8221 tatctttgta aaattctaat ctaaattgca taccaaaacg atcacgtaaa ggattgctaa
     8281 gcatacctgc acgcgttgta gcccctataa gagtaaattt tggtaaatcg atttttatgg
     8341 tttgagcagc tggaccacta cctatgataa tatcaaggcg gtaatcctcc attgcagggt
     8401 aaagcacttc ttcgatagca ggacttaagc gatgaatttc atcgataaaa agtatatccc
     8461 cttcgctaag attggttaaa atagcggcta aatctccgct tttttctatc ataggagcgg
     8521 cggttgtttt gatatttgca ctcatttcat aggagatgat attagctagt gttgtttttc
     8581 caagtcctgc aggaccacta aaaagtatat gatctaaaca ttcattgcgt tttttggctg
     8641 cagctataaa gacatttaaa ttttttttaa tgctttcttg acctatataa ccatcaaaat
     8701 ttgaaggacg caacgaagtt tcgtaagttt catcaaagga gtatttttct atttctacta
     8761 ttctatccat atctttgctt atattttgga aaaattaaaa taagatttta gctaaaattt
     8821 gctagaattt acattaaact ttaatgatta tggtttaaaa atgggaattt taacaaaatt
     8881 agaattagat tatgaaattg acgatataga aaaattttta caatttttta gaaccatgtg
     8941 cgataggttt gaacctttaa tcatcaagct tggaagcgat agtgtgcgtt ataaagaagc
     9001 cataaaagag cttgaaactt tagcacacaa taccgcttgg gcagcaagac gcttaaatct
     9061 tgaagaagtg actgattttt gtgtattttg tgaagagatg atggcgcaag caaatcgctt
     9121 taatgggcct gctagtgatg aatttacgga ttggatgctt ttgatgagtg atcagtttga
     9181 aaaatattgt cgttcatatg aaaatgatga ttctgtttta gcggttttta atcctttaat
     9241 tgttaatgtt ccaaatatta tttctaaata agggagcgac ttggcttcga caggagtaag
     9301 tctgcttaga tggcatgtcg ctttgggcaa agcgtaaaaa gcccaaataa aattaaacgc
     9361 aaacaacgtt aaattcgctc ctgcttacgc taaagctgcg taagttcagt tgagcctgaa
     9421 atttaagtca tactatctag cttaattttc ggtcattttt gatagtgtag ccttgcgttt
     9481 gacaagcgtt gaggtgaaat aaagtcttag ccttgctttt gagttttgga agatgagcga
     9541 agtagggtga agtagtcatc tttgctaagc atgtagaggt ctttgtggga ttatttttgg
     9601 acaggggttc gattcccctc gcttccacca gttttaaatc aatgtttatt gaaatttgaa
     9661 gattaataaa aattcatagt ttaaagtttt taaggtgtaa aaccctaaaa acttttagtt
     9721 ttccttaaaa agtttggaag ctaagtgcgt tgcacgactt tgatctgtat cttttttaag
     9781 tgttttataa attttactta catattcttc taaggtttgt tgagaatcta tgattttttc
     9841 agaagaagga attttttcat actctccatt gtttttaagc tcataagcta aaacattatc
     9901 actaagttgc aagcgtaaaa attgagctaa tttagcttta cttctttcat catatatagg
     9961 agtcataagt tctaagcgac gctctaaatt tcttggcatc caatctgcac tcgatataaa
    10021 ataatttggc tcactatgtt taaaataaaa tactctagca tgttctaagt attttcctat
    10081 gatgcttcta acgcgtatgt ttttgctgta ttcttcatca ggttttaagc aacaaattcc
    10141 gcgtatgata agatcgattt gcactccttc catacttgct tcataaagcg cttgtatgat
    10201 atcactatct acaagagaat tcattttagc tacaatcaca ccttcatttt tcttgcttgt
    10261 ttcaatgcgt atcatttcta aaactttttc tttgatttga tttgggctca ttgaaagagt
    10321 ttgaaggcga cgatttttgc taaagcccga taagatgtga aaaaagcttg tcgtatctct
    10381 tgcaaattct gctttgcttg taaaataact cacatcagta tagattttag cactgcttgc
    10441 attataattt cccgtactta aatgcatata aaatttaagt ttatctcctt gtttgcgtat
    10501 gacttgagaa accttagcgt ggactttaaa acctgtaatg ccataaataa catgagctcc
    10561 ggcattttct aaagcttttg cccaatgaag attgttttct tcatcaaagc gtgcttttaa
    10621 ttctaccatc acagttactt gttttccatc gcttgcagca tcaattaaag cttgaactat
    10681 attggaattt ttttcaactc tataaagtgt cattcttatg gaaattactt caggatcttt
    10741 gcttgcttct ttgataaatt tataaactgg atcaaaactt tcaaaaggtt gtataatgag
    10801 tatatcttct ttttctacag catcaaaaat agataaattc tcatcaaaag gtggtaaagt
    10861 tttaggcgtg taaagtgggc ttaaaagatg cgtaaaggtt ttatttcctg cgatttgcca
    10921 aaggctaggg agattgagta aaatagaata ttcataaaca tctttatgaa aaattttcat
    10981 gtgagtatta agaaattcta cgatttgctc atctgcatct ttttgaattt gcaatcttac
    11041 aaaagctcct tttctgcgaa gcttcaagcc ttgttctaaa atcatcataa aatcatcagc
    11101 ttcttcctct tctattacca tatctgcatt tctagtcact ctaaatgctg ctgaagctaa
    11161 gagtttatag cctggaaaaa tttcttctgc gtgttgatgg actatacttt ctataggaac
    11221 ataaatattt gcacttactt cataaaaacg aggtaaaact cttggaattc taatcattcc
    11281 aaattttaca agttcaggat gcgctttatc gcaaatttta accgctagtg aaaaagataa
    11341 gttgtttaaa tgcggaaaag ggtgagtagc atcaacagct attggaacaa taacaggaaa
    11401 aatattagag aaaaaatact catcacattt ttgttttaaa ttttcatcta aattctcata
    11461 atgttttatg aaaagatttt ctttttctaa ttcacttgtg atttcattaa aataacgctc
    11521 caaaagttct ttttcttggt gtaaatattt gcgtatggct tttaattgtt gtaacggggt
    11581 catttcatcg ctactgcttg cattaactcc agctgaaaaa agttgtttta agcctgcgac
    11641 gcgtatcata taaaattcat ctaaattagt gcaatatata gctataaatt ttaatttttc
    11701 taacaagggt aaatttttag aacattggtc taaaacacga gaattaaagc gaagccaaga
    11761 aagttcgcga ttgataaaca tatcagg
//
LOCUS       DAPOLW010000047        11713 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.047, whole genome shotgun sequence.
ACCESSION   DAPOLW010000047 DAPOLW010000000
VERSION     DAPOLW010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11713
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.047"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            48..1229
                     /locus_tag="ROE18_000883"
     CDS             48..1229
                     /locus_tag="ROE18_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002955959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HDX3651072.1"
                     /translation="MTPALAMFYSGMVRSKNTLNTIMNCFIVFGVITLQWVVLGFSLS
                     FGKDEGLGLVGNFENFLLEGISGYNASGVPNILFVIFQMMFALIASAIITGSLVGRIK
                     LGVLVIFLLFWSTLVYDVLAHMIWSSEGFLLKRGSLDFAGGGVVHISSGVAGLVGALM
                     VGARKSDDEDKNAHSIPYAFLGAILLFIGWLGFNAGSAGEMNDIAINAFIVSIISAAC
                     GFLSWVVLEWLIHKKPTILGGLSGLVAGLVGITPACGYVDIYASLVIGTLSSVFCYFG
                     LSFIKYKLKWDDSLDAFSLHGIGGIWGGIATGFFASAKVNSNVIAQNALGEGFFISGS
                     LELLKEQIFAIVICVVLSALISFVIFKIISCFTDLRVKEEVEQKGLDVSLHGEKAYTL
                     A"
     gene            complement(1289..2200)
                     /locus_tag="ROE18_000884"
     CDS             complement(1289..2200)
                     /locus_tag="ROE18_000884"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HDX3651073.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCDKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNASDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILAKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDVLANLNDKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLITCPNDSDEFIHFILKYLSDFN"
     gene            complement(2197..3063)
                     /locus_tag="ROE18_000885"
     CDS             complement(2197..3063)
                     /locus_tag="ROE18_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDX3651074.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDDLDKFLNQNNDIIIIATPTNSHLIIAKKVFKQCKCVLIEKPLALNLKEIDEISN
                     LAKEYSIKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLA
                     VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCIASIHQSWNSTQKLR
                     KIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQPNHLASTSD
                     AYKVQEILERFA"
     gene            complement(3068..4141)
                     /locus_tag="ROE18_000886"
     CDS             complement(3068..4141)
                     /locus_tag="ROE18_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HDX3651075.1"
                     /translation="MNFINLQAQYLAYKDEINAEIESVLSSSSFIGGAKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRVLDIGKDDEVIVPSFTFIATAEVVALVGAKPVFVD
                     INLSNYNLDFKAVQKAITPKTKAVIAVSMFGQMSDLRALEEILKDKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEIAKKIRILLNHGQTQRY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQIYNANLKNCQIPQINPNAFS
                     AYAQYSVLVEDRASVLQKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            4256..6784
                     /gene="alaS"
                     /locus_tag="ROE18_000887"
     CDS             4256..6784
                     /gene="alaS"
                     /locus_tag="ROE18_000887"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HDX3651076.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFANAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEVLKLPKDKLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGQEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTY
                     LNEKKDFIKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELFMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDAGWVMLENTPFYATSGGQSADSGFIAKREVL
                     DTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILSGIKKLKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDVPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKINEALKQSLETIEKAL"
     gene            6784..7335
                     /gene="maf"
                     /locus_tag="ROE18_000888"
     CDS             6784..7335
                     /gene="maf"
                     /locus_tag="ROE18_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HDX3651077.1"
                     /translation="MLILASSSISRANLLKTAKIDFRQVSFDYDENLNKNISPFLYVQ
                     KIVLEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKAKDKKEAYEMLALQNGKYA
                     SILSAFLLVKPEKRVFSLSKTTLYFKNFDENALRDYVENDLYKGKAGCIMCEGFHQNF
                     ITQQVGNLSTALGLDIQTLKAYL"
     gene            7332..9263
                     /locus_tag="ROE18_000889"
     CDS             7332..9263
                     /locus_tag="ROE18_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HDX3651078.1"
                     /translation="MKILKYIFSFFTLLFIAGFIYVAYLFTSADTEGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPERTIARKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTAALGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDTAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNSNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKANMKFNESEIIF"
     gene            complement(9291..>11713)
                     /locus_tag="ROE18_000890"
     CDS             complement(9291..>11713)
                     /locus_tag="ROE18_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDX3651079.1"
                     /translation="LNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLE
                     NAKGLMSANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKMDSK
                     TSDETLDSLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGV
                     GKTAIVEALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIK
                     SENIILFIDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDA
                     ALQRRFQPVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRF
                     LPDKAIDLIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDE
                     IAKELANLKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAEL
                     EYGKIPSLEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEK
                     QKFLEVEKHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQS
                     AKALAKFLFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYS
                     VLLFDEVEKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASNAIMNLSG
                     KEQEDAVKNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIK
                     ASLSENAALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKD
                     DEIIIKKA"
BASE COUNT         3795 a         1770 c         2026 g         4122 t
ORIGIN      
        1 cgataaattc aagttttatt gtgttgtgta ctttgctagt tttgcttatg actccagctt
       61 tggcaatgtt ttattcaggt atggtaagaa gtaaaaatac tcttaatact ataatgaatt
      121 gctttattgt ttttggtgtt attactttac aatgggtagt gcttggattt agtctttctt
      181 ttggtaaaga tgaaggactt gggcttgtag gaaatttcga gaatttcctc ttagagggta
      241 ttagcggata caacgcttca ggcgttccaa atattctttt tgtgattttt caaatgatgt
      301 ttgcacttat tgcatctgcc atcataacag gctctttggt gggaagaatt aaactgggtg
      361 ttttggtgat atttctactt ttttggagta ctttagttta tgatgtgtta gcacatatga
      421 tttggagcag tgagggattt ttgcttaaaa gaggaagtct tgattttgct gggggcggtg
      481 ttgtgcatat tagctctggg gttgctggac ttgtaggagc tttgatggta ggcgctagaa
      541 aaagtgatga tgaggataaa aacgcgcatt ctattcctta tgctttctta ggtgcgattt
      601 tgctttttat aggatggtta ggttttaatg ctggaagtgc tggcgaaatg aatgatattg
      661 ctatcaatgc ttttatagta agtattatat cagcagcttg cggcttttta tcttgggtgg
      721 tacttgagtg gctcatccat aaaaaaccga ctattttagg tggacttagt gggcttgtag
      781 cagggcttgt gggaattact ccagcttgcg gttatgtaga tatttatgct tctcttgtta
      841 tagggacttt gtcttctgtg ttttgttatt ttggtttaag ttttattaaa tacaaactca
      901 aatgggatga ttctttagat gccttttctt tacatggaat cggaggtatt tggggaggaa
      961 ttgccacagg gttttttgca agtgctaaag taaattctaa tgtgattgcc caaaatgcac
     1021 tcggcgaggg attttttatc agcggaagtt tggaactttt aaaagagcaa atttttgcta
     1081 ttgtgatttg tgtggttttg tcagctctta taagctttgt tatttttaag attatctctt
     1141 gttttacaga cttaagagta aaagaagaag tagagcaaaa aggcttagat gtgagtttgc
     1201 acggagaaaa agcttatact ttagcttagt tggctaaatt tttactaaaa agtccttgta
     1261 atcataaaca aggacttcaa aatcattctt aattaaaatc agacaaatac tttaaaataa
     1321 agtggataaa ttcatcacta tcatttgggc aagtgattaa atcataatcg cactttgcta
     1381 aatgtttata ctccatacct agctcaaaaa tcgtttcaga acaatcaatg caaaaagaaa
     1441 tagggtaaat cagagcttta tcgtttaaat ttgccaaaac atcgcttgta tttggttcaa
     1501 gccattttac agggcctagt ttagactgat aagctaaaat aaattcatca aaatgatctt
     1561 ttagcttttc ttttaaaatt tctacatgat catttacatg cttttcatat aaatcacctt
     1621 tatcaataat gctttgtggt aaagaatgcg ctgaaaaaat caaaattttg gcatcaaatt
     1681 tacttttttt agccaaaatg tgcgaaacta tcatctcgtt ataaagctca tttttgtaaa
     1741 aaatatctat agtttttact tttgcttgaa ttttttgctt tgaaatttca ttttgcagaa
     1801 cttctaaaga tgaagttact gtggtgcaag aatggtgcgg ataaagtgga aaaagaatga
     1861 tttcatcact tgcatttaaa gtgtattttt gcaaaatttc tgtggcaaaa ggaggaacat
     1921 aaagatttac aaaatcaaat ttaaattcat cttgttttaa attaagcttg tcacacaggc
     1981 tttgagtaag ttcgtttaaa ggggattttc cgcccatttt tttatagttt tcttgcatgg
     2041 ctttaacgcg agcctttgtt atgatccatg ctacaaattt tcttaaaaat cgatttttga
     2101 ttcctaaaat ataaggatca ttaaacatat tttttaaaaa aacttcacaa tcttgtaaat
     2161 tcgtagctcc gcccatattt aaaaataaaa ctaatttcac gcaaaccttt ctaaaatttc
     2221 ttgaactttg taagcatcgc tcgtgctggc taaatgattg ggttgattat cgataagttt
     2281 taacaaagct tcgtgttctg aaaaaagtgg actttgttga gtaagttcta taaaatttcc
     2341 atcttttaat aaagaaaagt catttaaatt ggcttcataa aaatgatttt tagtaataag
     2401 atgaattttt cttagttttt gtgtgctatt ccaactttga tgtatgctag caatacattt
     2461 ttcaagctca catagaataa tgctttcact ttctcttgtt tgatcttggg tgtatttttt
     2521 aagcaaattg gtttttgtta tttcttgttt gcttaaaaaa caaagcaaat caagatcatg
     2581 cacagccaaa tcttgcaaaa tccctacatc gctgattctt tgtgggtagg gtgaaaatct
     2641 ttgtatgtta atgctgataa tttcttcatt ttcaagctct ttttttaggg ctaaaaccgc
     2701 aggattaaat ctttcgcaaa aacctacacc tacttttatg ctgtattctt tagctaaatt
     2761 tgaaatttcg tctatttctt ttaaatttag agctaaaggc ttttcgatta aaacgcattt
     2821 gcattgttta aaaacttttt ttgctattat taaatgtgaa tttgtaggtg ttgctatgat
     2881 gataatatca ttattttgat ttaaaaattt atccaaatca tcataaaaaa tatcatcaaa
     2941 aatatttagg tttggatttt tgcaaagatc aaaaagtgca ttaagtttaa aatgagaatt
     3001 tttactaagt tcatttaagt ggttttgccc catttttcca aggcctatga tacctatttt
     3061 catggaatca atctttaaaa atacaaataa cttgctcttg ctcttcttca cttaaaaaag
     3121 gtgaaaaagg caaagataag atgtgttcgc ttgcgtattc tgaattttta agttctaaat
     3181 ttgaaaactc actaaagcaa ggttgtttat gcaaaggggt tggatagtgt atagcataag
     3241 gtatattagc tttttcaaat ttttgcaata cactagctct atcttcaact aaaacgctgt
     3301 attgtgcata agcactaaaa gcatttggat taatttgtgg aatttggcag ttttttaaat
     3361 ttgcattata aatttgtgct aatttttgtc ttttgtctaa ttctttttct aggtatttta
     3421 acttaacatt taaaatcgct gcttgtaagg tgtcaaggcg tccatttata cctataaatt
     3481 catgtttata acgctgagtt tgtccgtgat tgagtaaaat tcttattttt ttagcaattt
     3541 catcatcatg gcaaaaaata gccccgccat cgccataagc tcccaaaggc ttcgaaggaa
     3601 aaaagcttgt gcatgaaatt ttagctatag agcaggattt ttctcctttg aaacttgcgc
     3661 caaaactttg tgcaccatct tcgatcaaag tgatattttt atcttttaaa atttcttcta
     3721 aagcccttaa atcactcatt tgtccaaaca tactcactgc tataacagct ttagtttttg
     3781 gagttattgc tttttgcact gctttaaaat caagattgta atttgataaa tttatatcta
     3841 caaaaacagg ttttgcacct accaaggcca caacttcagc tgttgctatg aaagtaaaac
     3901 taggtactat aacttcatca tctttaccaa tatctaagac tcttaaggca aggtataaag
     3961 cactagttcc acttgagcaa cctatagcgt gtttaacacc taagaaatga gctaaatttt
     4021 gctcaaattc gttaagcttt gcaccgccta tgaaagaaga gcttgataaa acgctttcaa
     4081 tttcagcatt gatttcatct ttgtatgcga gatattgggc ttgaagattg ataaaattca
     4141 taaaaaacct tagagaaata aaattaaata aaaatgttta ttgtatttta gttttactta
     4201 atttaaagta attttggtat gatatgtttt tataaaaatt tctttaggaa aattcatgga
     4261 tattagaaaa gcttatttgg atttttttgc atcaaaagga catgagataa ccccgtcaag
     4321 tcctttagtt cctgatgatg caactttact ttttgccaat gcgggcatgg tgccttttaa
     4381 aagtatattt acaggagaaa ttccacgccc aaaccctcca cgcaaaacaa gctgtcaaac
     4441 ttgtataaga gcaggtggaa agcacaatga cttagataat gttggctata ccgcacgcca
     4501 tcatactttt tttgaaatgc ttgggaattt tagttttgga gattatttta aagaacaagc
     4561 catagcttat gcttgggaat ttgtaactga agttttaaaa ctacctaaag ataaacttta
     4621 tgtaaccgtg catgaaaacg atgatgaagc ttttaatcta tggcaaaaac acattcaaaa
     4681 agaaagaatt tacaaatttg gcgataaaga taacttctgg caaatgggcg atactggtcc
     4741 ttgtggtcct tgtagtgaga ttttttatga ccaaggacaa gagcatttta actcaagcga
     4801 agattatatg ggcggagatg gagatagatt tttagaaatc tggaatcttg tttttatgca
     4861 atatgaaaga agtgctgatg gagtgcttag cccactgcca aagccaagta ttgatacagg
     4921 aatggggctt gaaagagtaa cagcaattaa agaaggtaaa tttagcaatt ttgatagctc
     4981 gctttttatg ccaatcatca atgaaatttc aaaactttgt aacaaaactt atgtttatga
     5041 aagtggagca agttttagag tcatagctga tcatataaga tcaagtgtat ttttacttgc
     5101 acaaggggta agttttgata aagaaggtag gggttatgtt ttgcgtcgta ttttgcgtcg
     5161 tgctttaagg catggatatt tgctaggttt taaacaagct tttatgtata aactagttga
     5221 tgttgtgtgc gatttaatgg gcggacatta tacctatctt aatgagaaaa aagactttat
     5281 aaaagaacaa attcgccttg aagaagaaag atttttaagc actatagaaa atgggattga
     5341 aatttttaat gaagagctta aaaacactaa agaaattttt agcggagaag tagcctttaa
     5401 gctttatgat acttatggtt ttccgcttga tttaacggct gatatgctaa gagaaaaaaa
     5461 tcttaaagtt gatgaagaaa aatttgaact tttcatgaat gagcaaaaag cacgcgctaa
     5521 ggcttcttgg aaaggaagtg gagataaaac tgcaagcgga gattttaaaa acttacttga
     5581 aaaatttgga gaaaatcatt tcgtaggtta tgaaaaagca gaatgcgaaa gtaaaatttt
     5641 agccctttta gatgaagatt ttaaagaagt ttccaccctt aaagatgcgg gttgggtgat
     5701 gcttgaaaac acaccttttt atgcaacaag tggggggcaa agtgctgata gtggatttat
     5761 agctaagcgt gaagttttag atacgcaaaa gttttttaat ctcaatctta gctttataaa
     5821 agcaggcgaa gaactaaaag ttaacgatat agttcatgca agaatcgata cagaaaaaag
     5881 agagcaaatc gcacgccacc actcagccac tcatctttta catcatgctt taagagaaat
     5941 tttaggttct catgtaagcc aagcaggatc tttggttgaa agcaataaac taagatttga
     6001 ttttactcat cataaagctt taaacaaaga agagctagaa agcattgaaa aaagagtcaa
     6061 taaaatgatt ataaactcaa gcgaagctat cttagaaaat atgcctttag aagaagctaa
     6121 aaaaagcggt gctatagcat tgtttaatga aaaataccaa ggcaatgtgc gtgttttaac
     6181 tctaggtgaa agcaaagaac tttgcggggg aactcatgtt aaaaatactg ctcaaatagg
     6241 aagtttttac atagttaaag aaagtggtgt gagtgctgga gttagacgta ttgaagctgt
     6301 ggtttctaaa gcggctttag aatttgtaaa aaatcaactc gaagaacttt ctaaagtaaa
     6361 agatgaactt aaaaataatg atattttaag cgggattaaa aagcttaaaa atgaaatttt
     6421 aagtttaaaa aatgagctta aaaattcaag taaaaccgag cttgattcta aaaatatcca
     6481 aggtgttgaa atttgcgtaa aacgtataga taatggcgat attaaagcta tgattgatga
     6541 ttttaaaaac aaatttgcta aagcggtgat tttacttatc caagtaaaag atgaaaaaat
     6601 cactttagca gctggcgtta aagatgtgcc tttaaaagca ggagctttgg ttaaagaagc
     6661 ggcgcaaatt ttaggtggaa atggtggcgg aagagatgat tttgctactg caggtggaaa
     6721 agatttaagc aaaatcaatg aagctttaaa acaaagctta gaaacgatag aaaaagcact
     6781 ttaatgttaa ttcttgcttc aagttccatt tcaagagcta acttgcttaa aaccgcaaag
     6841 attgatttta ggcaagttag ttttgattat gatgaaaatt taaataaaaa tatttcacct
     6901 tttttatatg ttcaaaaaat agttcttgaa aaagaaagac aatttttaag tactttaggc
     6961 aaagattttc aaaaccaaaa tttgcttttt gcagatagta tagtttgtat agatgaaaaa
     7021 attcttacca aagcaaagga taaaaaagaa gcttatgaaa tgcttgcctt gcaaaatgga
     7081 aagtatgcaa gtattttatc ggcttttttg cttgtaaaac ctgaaaaaag agttttttct
     7141 ctttcaaaaa ctacacttta ttttaaaaat tttgatgaaa atgctttaag agattatgta
     7201 gaaaatgatc tttataaagg caaggcgggt tgtattatgt gtgagggttt tcatcaaaat
     7261 ttcatcaccc aacaagtagg aaatctaagc actgctttag ggcttgatat ccaaacttta
     7321 aaggcttatt tatgaaaata ttaaaatata ttttttcatt ttttactctt ttgtttatag
     7381 ctggatttat ttatgtggct tatcttttca caagtgctga tactgagggt tatactttta
     7441 aagaatacaa acctcctctt acaacacaaa tttacgatag aaatggcaag cttgtggcta
     7501 atatttttga acaacatcgt ttttacgctc cttatgaaga gcttcctcca cgccttatag
     7561 aagctttggt tgctatagaa gatacaagct tttttgaaca taatggagtt aatatcgacg
     7621 ccatttttag agctgccgta aaaattataa aaagtggtgg aaaaaccatg gaaggagctt
     7681 ccactcttac tcagcaattt attaaaaaca cggaattaac cccagaaaga actattgcgc
     7741 gtaaaattcg agaagctttg cttgcttata aaatggaaac cattttaact aaggaacaaa
     7801 ttttagaaag gtatttaaat tttatctttt ttggacatgg gtattatgga gtaaaaaccg
     7861 cagctttggg gtattttcat aaaaatttaa atgaactaag ccttaaagag attgctatgc
     7921 tagtaggtat gccaaaagca cctagcagtt atgatcctac aaagcattta gatctttcca
     7981 tctcaagagc aaataatgtt atttcaagaa tgtataatct aggttggatt tcaaaagcag
     8041 attatgatac agccattaaa gaaattccgc aagtttatga tgatacgctt actcaaaatg
     8101 ctgctcctta tgtcgtagat gaagtgatta aacaattaag ccctaatatc aaagacttaa
     8161 aaacaggtgg atataaaatc attttaaata tagacttaga tgttcaaaat atggcacaga
     8221 atgctttaaa atttggttat gatgagatag taaaacgcga taaagatgca aatttaagca
     8281 ctttaaacgg agctatggtc gtggtaaatc atcaaagtgg tgatgtttta gctttggtag
     8341 gtggagttga ttatgaaaaa agtaattata accgcgctac tcaaagtatg cgtcaacctg
     8401 gaagctcttt taaacctttt gtgtatcaag tggcgattaa tttaggatat tcgcctatga
     8461 gtgaaattgc tgatatttct agaatttttg aaggtggagc gggtaataat gaggattgga
     8521 aacctaaaaa tgaagggggt aaatttttag gtttaattac cttaaaagaa gctttaacaa
     8581 gatcaagaaa tttagctacc attaatctcg cacttgatat ggggcttgat gttctttact
     8641 ctaaactaat ggaatttgga tttaaagata taccgcctaa tttatcaatc gtattgggaa
     8701 gttttggtat ttctcctttg gagtattcga aattttatac catgtttggg aactatggta
     8761 cgattaaaga tcctcaaatt atcagacaag ttcaggataa aactggtaaa accatcatgg
     8821 aatttaactc aaatgagcgt aaagtcagcg atgaagcgca aagttttctg gttttagata
     8881 tgatgagaaa tgttgttgaa aaaggcacag ggcgtaatgc aagagtaaaa gatatagaaa
     8941 tagcgggaaa aacaggaaca acgaataaaa gtgttgatgc ttggttttgt ggacttacgc
     9001 ctgaaataga agcaatcatt tggtatggaa atgataacaa caagcctatg cgttatacag
     9061 aaggtggggc tagaacagct gctcctgtgt ttagagaatt tttaactcaa tatatagaaa
     9121 aattccctga tacaactaga aaatttagca ttcctaatgg agtttatcgt ggaaattata
     9181 aaggagaaag tgcttattat accaccaaat caccattacc aaaagcaaat atgaaattta
     9241 atgaaagcga gattatattt tgaaagtaga aagatctact ttcaaaatga ttaagctttt
     9301 ttgatgatta tttcatcatc ttttgcatca atgataatac tatcattttc atgaagttca
     9361 tcagcaagta tcatatcgct taatttatct tctataagat cataaatagc tcttcttaaa
     9421 ggtctagcac caaaatcagg gtcaaaacca tctttagcga ttaaaagggc tgcattttcg
     9481 cttaaacttg cttttattcc cttgttttct aagctcattt gtaaatcttt aaataaaagc
     9541 ttgactattt cataagcttc atcttttcca agtggattaa aggtgataat atcatctaaa
     9601 cggtttaaaa actcaggttt aaagaaattt tttaactcat tttttaccgc atcttcttgt
     9661 tcttttccgc ttaaattcat aatagcgttt gaggcgatat tagaagttag aatgataatg
     9721 gtatttttaa aatccactgt tacacctttg ctatcggttg ctctaccatc atctaaaatc
     9781 cctaaaagca cattaaatac atctttatgt gctttttcaa cttcatcaaa caaaagcacg
     9841 ctataaggtt ttcttcgtac ggcttcagta agctctccac cttcttcatg tcctatatat
     9901 cctggaggcg cacctaagag tcttgaaaca ctatgttttt ccataaattc actcatatca
     9961 aagcgaatca ttgctttttc atcatcaaat aaaaattttg ccaaagcttt agccgattgt
    10021 gtttttccta cccctgttgg ccctaaaaat aaaaagcttc ctataggttt attgtccgca
    10081 ttaagccctg ctttgttacg tttaatggct ctagctaaag cacttaaggc cttatcttgt
    10141 cctatgacac tttcttttaa atgtttttcc acttctaaga atttttgttt ttcagaagtt
    10201 aacatttttt gcacgctaat acccgtccat ttgcttaaaa ttccagcaac caaatcctca
    10261 tctacttgat ttttaagtaa aactccattt tcactcattt ttttccattt atcttctaaa
    10321 atttctactt ctttttcaag acttggaatt tttccatact ctagctcggc tgctttttga
    10381 aattcacctc tagctttagc caaagaagct tcatttttaa gcagatcaat ttcttttttc
    10441 ttagcactta tgccatcaaa aacacttttt tcattttcaa actgtgaatt tagggcattt
    10501 tgtttttctt ttaaattagc tagttctttt gcgatttcat cgagtctttt ttgatttttt
    10561 tcatcatttt ccatttttaa agcttcattt tcaacttcta aagtttctat atctttgcgt
    10621 acttttctta aagaacttgg ttcgctttca atttgcattt tcagttcagc tgcagcttca
    10681 tcgattaaat caatggcctt atcaggtaaa aaacgatctg ctatataacg ctttgaaagt
    10741 ttagctgcgg ctactaaagc actatcattt atggttacat tatgatgaat ttcaagcttt
    10801 tcttttatac cccttaacat agccaaagcc tcattaacac ttggctcacc tacatttaca
    10861 ggttgaaaac ggcgttgcaa ggctgcatct ttttcaaaat atttacgata ttcttttaaa
    10921 gtagttgcgc ctatggtatg gagttcacct cttgcaagag caggttttaa aatatttgcc
    10981 gcatccatgc tgccttcact cgctccagct cctactatag tgtgaatttc atcgataaaa
    11041 agaatgatat tttcactttt tatcacttca ttaaccacag cttttaatct atcttcaaat
    11101 tctcctctgt attttgcacc tgcaattaaa gcactcatat caagagcgat gactttttta
    11161 ttttgcaaag attttggaac atctttttta ataattcttt gtgctaaagc ttctactata
    11221 gctgtttttc ctacgcctgg ttcacctaaa agtatagggt tatttttggt tttacgtatt
    11281 aaaatttgca tcaaacgttc gatttcttct tctctgccta taacaggatc aagtttaccc
    11341 tcgcttgctt ttaaggttaa atctatacca aatttattta agctatctaa agtttcatcg
    11401 cttgttttgc tatccatttt tcgtcccgct cttagacttt caagctcttt ttgaaattct
    11461 cttaaatcta aaaattgcgc caaaatttct ttaataggac ttttttgact ttcacttata
    11521 agccaagtat ccacacttaa ataactatct ccattagcac tcattaatcc tttagcattt
    11581 tctaatgaat ttataagttc attggaaaag cgtatatttt cacggtttac atttgaactc
    11641 gttgcaagtt ttgaaattct gcttttaatt tcaagctcta aggcttcttt agaaatattt
    11701 aatttattta aaa
//
LOCUS       DAPOLW010000048        11195 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.048, whole genome shotgun sequence.
ACCESSION   DAPOLW010000048 DAPOLW010000000
VERSION     DAPOLW010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11195)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11195)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11195
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.048"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            14..1078
                     /gene="mqnE"
                     /locus_tag="ROE18_000891"
     CDS             14..1078
                     /gene="mqnE"
                     /locus_tag="ROE18_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HDX3651080.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEVRKKICHGKVSSENWLKIHKLWHEKSKQSNATMLFGHIEER
                     HHRIDHMLRLRDLQDQTGGFNAFIPLVWQRDKSFIQTDKIMDSEEILKTIAISRLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTSLKTFIDMI
                     KTSNLIPVERDSLYNELKTY"
     gene            1088..2407
                     /locus_tag="ROE18_000892"
     CDS             1088..2407
                     /locus_tag="ROE18_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDX3651081.1"
                     /translation="MSFFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNTGMP
                     IEALITATALITIVASAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAV
                     FISSIIFLILSFTHFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFILGVLASSIIAWIFHLDNASFPVQIF
                     SWPNFSMENGLGAIFLQLNIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAVASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            2421..2864
                     /locus_tag="ROE18_000893"
     CDS             2421..2864
                     /locus_tag="ROE18_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HDX3651082.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKEDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDNTKKLDTIEIFNIPDLSKHKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKITTIFYKKTALLEPDFKVKEATEWVDFYWDINLD"
     gene            2909..3607
                     /locus_tag="ROE18_000894"
     CDS             2909..3607
                     /locus_tag="ROE18_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HDX3651083.1"
                     /translation="MRIKFISFILIFFTIFAFAKEQNLDDFEQEYQNYQVNDPLSGYN
                     KAMTSFNVALYDYGLRPVLKGYNAITPEFIRLGARNFFDNLLAPLRFVSNVLQFKFEE
                     AGEEFKRFTANTIMGFGGLMDVASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
                     NLRDTLTLPATWYASFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPF
                     LRDAYEQRRNELSK"
     gene            3617..4186
                     /locus_tag="ROE18_000895"
     CDS             3617..4186
                     /locus_tag="ROE18_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HDX3651084.1"
                     /translation="MKKIFLILTLFFNAFALQLDEISSTMQKNIDASLKLLQDNKEDK
                     KQAANGIFKLFDSIIDYKLMAKLSLSKNYSKLTPKEQEKFTTAFETSLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSMVVDGEEKNIIFKFYNDNNNWLIYDVDVLGVSIV
                     QTYRSQFGDILANQGFDALLQKLESIVIE"
     gene            4186..6657
                     /locus_tag="ROE18_000896"
     CDS             4186..6657
                     /locus_tag="ROE18_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HDX3651085.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSFFAFKLSVDASAESLL
                     LEDDADLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDINRTKAQNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNNLIEKRDLATDEKEKDQIRLAIKEHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMIAYIKSDLVLYGVSLVFLLGLALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLNFQITVISSNYVALVLIITLSVVVHLITHFIESTQNHPK
                     AKVERIVLETLLAKANPSLYAIVTTMIGFFSLILSNIEPIIKLGIMMSIGIGLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDPKKRRMIYEISVLAIILALIGIS
                     KLRVENSFVNYFKDGSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNASDTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSVLSLNSLLTLGKNINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSMRIVDSDPNLRRNEFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMMSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKTKFPNQHKEHILKQ"
     gene            complement(6688..7290)
                     /gene="rdgB"
                     /locus_tag="ROE18_000897"
     CDS             complement(6688..7290)
                     /gene="rdgB"
                     /locus_tag="ROE18_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HDX3651086.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIALSDDSGICVDVLEGNPGIYSARFSGKGDDKSNR
                     DKLVNEMIKKGFKQSKAYYVAAIAMVGLMGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILNKG"
     gene            7457..8752
                     /locus_tag="ROE18_000898"
     CDS             7457..8752
                     /locus_tag="ROE18_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDX3651087.1"
                     /translation="MLNNVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALTQMILQMPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYTMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSAKWGLSSLFD
                     LSAALSLLCIILLYTVVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKKGLAKQILLLGIVFF
                     ILSYLFFAFSNSIDFFIIAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLDTLNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     NFSTFGENLGVVDIYKNSKNLVVKFDSKLTSKEELEGKL"
     gene            8749..9558
                     /locus_tag="ROE18_000899"
     CDS             8749..9558
                     /locus_tag="ROE18_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDX3651088.1"
                     /translation="MKKILFLFCSFFLAFAKPSLEIPKLSKQAKQNFILENVKFNYNG
                     TIYKIFIAKNKNENSNYKYKIIYLLDGNAFFPLFLNLFNTPVKENLLIIGIGYDNNLA
                     FDTQKRTKDYTPTTNLNKQGGGSKEFRNFLITQLIPYINKMYPIDFSHQILFGHSFGG
                     LFAIDTLLYDSKIFSHYFIISPSLWWDNSEFLPNIIKLQTCPKIYIGLGSLETNSSII
                     KGVAKLNAQKLSEKISKETNCKTHFKLFKNETHGSVISKAMLWMKKLLDLN"
     gene            complement(9551..>11195)
                     /locus_tag="ROE18_000900"
     CDS             complement(9551..>11195)
                     /locus_tag="ROE18_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HDX3651089.1"
                     /translation="IKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYAPEINFY
                     LKNSQDEILEQSKNVLTLYEARASVYDLGLDLEQSKEVQNRLIVADGDAQTVEFLKEH
                     EFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAEDLSVVRKDFTRQS
                     GCYNLLNFENLEVLFEFLQSKSPKYHYKTYISYNASVCQYHERRSEHCAKCAEICPTV
                     AILKDDENKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKDKKILII
                     PKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQNSGANLVFYTDFVSRGSNEA
                     IVLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRENFAKRM
                     QEMIKNEDFGSMESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQENALKFNA
                     SLCTTCGYCELSCAEKDTLKLFRSGMEFRASYFEYQTMAKDELFACIECGKEFATKKA
                     VEKIANLMKPKFGNDENKIKTLYCCADCKAKVMIKAMIN"
BASE COUNT         3799 a         1762 c         1687 g         3947 t
ORIGIN      
        1 gagtaaaatt aaaatgaaaa atttaatcac caaactagaa aatgaagaaa gattaaacca
       61 agaagaagcc aatgcacttt gggatctaga tctttttacc ttaggcaaat acgctcacaa
      121 aaaacgcact aaacttcatg gaaaaaaagt ctattttaat atcaatcgcc atatcaaccc
      181 aactaatatc tgtgcagata cctgtaaatt ttgcgccttt tcagcgcacc gaaaaaatcc
      241 taatccttat ttgatgactc atgaagaaat catgaaaatc gtcgatgaaa ccgtaaaacg
      301 agaaaccaaa gaagtgcata tcgtttcagc tcacaacaaa gatacaactt ggcaatggta
      361 tttagaaatt tttaaaatga taaaagaaaa atatcctaat cttcatgtaa aagctatgac
      421 tgctgctgaa attgattttt tacatcgtcg ttttaaaatg agttatgaag aagtgataga
      481 aaaaatgctt gaatacggcg ttgattccat gccaggtggt ggagctgaaa tttttgatga
      541 agaagtgcgt aagaaaattt gtcatggaaa agttagcagt gaaaattggc ttaaaattca
      601 taaactttgg catgaaaaaa gcaagcaaag taatgctacc atgctttttg gacatataga
      661 agaaagacat cacaggatcg atcatatgtt aagactgcgt gatcttcaag atcaaaccgg
      721 tggattcaat gcttttatcc ctttagtttg gcaaagggat aaaagcttta tacaaactga
      781 taaaatcatg gatagtgaag aaattttaaa aaccattgcc atttctcgtt tagtgcttga
      841 taatatcaaa aatatcaaag cttactgggc aacaatgact ttaaatttag ccatggtagc
      901 acaagaattt ggagctaatg atttagacgg cactatagaa aaagaaagta tacaaagtgc
      961 aggtggtgca aagtccgcca aaggcacaag tttaaaaact tttatcgata tgataaaaac
     1021 ttcaaatctt attcctgtag aacgcgatag tttatacaac gagctaaaaa cctactaagg
     1081 agaaaaaatg agctttttta aactcaaaga aaacaatacg agttttaaaa ccgaagttat
     1141 agcaggactt actacttttt tagctatggt ttacattatc cccgtaaatt ctagcatagt
     1201 aggaaataca ggaatgccta tagaagcttt aatcaccgca acagctttaa ttaccatagt
     1261 tgcaagtgct tttaatgctt tttttgccaa tactcctgta gctatgagtg taggaatggg
     1321 tttaaatgct tattttacct ttgcggtttg tttaggtcaa aacatagctt ggcaaagcgc
     1381 cttaggagct gtttttattt caagtattat ttttctcata ctttctttta cgcattttcg
     1441 cctttgggta atccgcaata tcccaaaaga tttacgcctt gcaatttgtg cgggcatagg
     1501 ttgttttatt gcatttttag gcttaagtca aatgggtgtg ataatgcata ataaagatac
     1561 cttagtcagc ataggaaatt tcaaaagccc tcatgtgctt tttggaattt tcactctagc
     1621 tttaatcatc tttttttggg ctataaaact tcgcggagct tttattttgg gggtattagc
     1681 aagctctatt attgcttgga ttttccattt agacaatgca agttttcctg tgcaaatctt
     1741 ttcttggcca aattttagca tggaaaatgg tttaggagcc atctttttac aacttaatat
     1801 caaaagcgcc ttaaatatta ctatgatacc tataattctt acttttttta tcactcaact
     1861 ttttgatagc ataggaacta tcacaggtgt gggtgaaaga ggaaagattt ttgatgatcc
     1921 caaaaatgga gaaaaaaaac taagcaaaac cttaatggca gatgcaacag gatcagcctt
     1981 aggagctatg acaggcactt ctacagttac agcctttgtt gaaagcacta caggggttga
     2041 aagcggagga agaactgggc ttacagcttt agttgtagct atttgttttg cttttacact
     2101 ttttttactg ccacttttta aagccattcc tgcaaacgca atataccccg tacttgtaat
     2161 ggttggaatt ttaatgttta tggaagttaa aaatatagat tttaaagata gtgctatagc
     2221 tgtagcaagc ttttttacta ttatcatgat gccttttact tactccatca ccacaggttt
     2281 tgcttttggt tttctttctt atttacttgt aagaattttt aaacgcgaat gggataaaat
     2341 caatcttggc attatagttt taagtttatt atctttgggt aattttttac ttatggcact
     2401 acaataaata aggatatata atgatatttt actcctatga agaatttaaa gaagatgtaa
     2461 aaattcttgc taaagaaatt aaagaagatt ttaaccctga tgcactttta gctatagcaa
     2521 gaggggggat gagtttagga cactctttag cagtggcttt aaaaacgcgt caactttttg
     2581 ctttaaactc aattcattac gataatacga aaaaacttga tactattgaa atttttaaca
     2641 ttcccgattt aagcaagcac aaaaaaattc tactcattga tgatatagta gatagtggag
     2701 aaagtttagc agaaataaaa aaagttttgc ttgaaaaatt tcctcatata gaacttaaaa
     2761 ttacaaccat tttttacaaa aaaaccgctc ttttagagcc tgattttaaa gtaaaagaag
     2821 ctactgaatg ggtggatttt tactgggata taaatcttga ttaaaaattt gctataattt
     2881 tacttttaaa atttttagga gtttttgctt gagaataaaa tttatatctt ttattttaat
     2941 tttttttact atttttgctt ttgctaaaga acaaaattta gatgattttg aacaagaata
     3001 ccaaaactat caagtaaacg atccactttc aggatataac aaagctatga caagctttaa
     3061 tgtggctttg tatgattatg gtttgcgtcc cgttcttaag ggctataacg ctatcactcc
     3121 tgaatttata agattagggg caagaaattt ctttgataat ttacttgctc ctttgcgttt
     3181 tgtaagcaat gttttgcagt ttaaatttga agaagctgga gaagaattta aaagatttac
     3241 cgccaatacc atcatgggtt ttggtggact tatggatgtg gcatcaaaaa tgggtcttaa
     3301 aaaacatccc gcggacttag gaaccgtttt ggctcactgg ggtgtaggaa gcggttttca
     3361 tattgtctta cctatacttg gtcctagcaa tcttagagac actcttactt tacctgcaac
     3421 ttggtatgca agttttaccg cttacattga tcctacttgg gcaagtatag ctataagtgc
     3481 ttatggattt ggtaatgaac ttagttttag gcttgatgaa attgatgaaa tttatcacaa
     3541 cacgcctaat ttatatccat tcttgcgtga tgcttacgag caaagacgca atgaacttag
     3601 caaataaagg aaattaatga aaaaaatatt tttaatcttg actttatttt ttaatgcttt
     3661 tgccttacaa ctagatgaaa tttctagcac tatgcaaaaa aacattgatg caagcttaaa
     3721 acttttacaa gataacaaag aagacaaaaa acaagctgct aatggaattt ttaaactttt
     3781 tgatagcata atagattata aactcatggc gaaactcagt ctttcgaaaa attattctaa
     3841 attaacccca aaagaacaag aaaaatttac cacagccttt gaaacaagtc ttaaaaaaag
     3901 ttttaccgat aaactcagtc tttataaaga tcaggtttta aaggtcaaaa atggtgagtt
     3961 aaaaaatgaa aaacgctatt ttttaaccac ttctatggta gtagatgggg aagaaaaaaa
     4021 tatcattttc aaattttaca atgataataa caactggctt atttatgatg tagatgtttt
     4081 aggtgtgagt atagtacaaa cttatagatc acaatttgga gatattttag ccaaccaagg
     4141 ctttgatgcc ctacttcaaa aacttgaaag tattgtcata gaataatgtt tgcaaagctt
     4201 ttaaagtttt ttatttctcg tccaaaaagt actttttttg gaacgttgtt tatatgcctg
     4261 tttttaagct tttttgcttt taagcttagc gtagatgcaa gtgctgaaag tttactttta
     4321 gaagatgatg cagatttaaa aacttttaga gaaatttcaa aacattataa aagtgataat
     4381 tttttacttt tagccttcaa accctatgat gaaaaacctt tttcaaatga aaatttagcc
     4441 aaattaaaaa aacttcatga agaattagaa aaagcccctt tagtagaacg cgtttttagt
     4501 atcatcaatg cccctttgct tcaaagttcg caaaatacgg atttaaaaga acttttaaaa
     4561 aatatcccaa atatagaaag ccaagatata aaccgcacaa aagcccaaaa tgaaatttta
     4621 aatagtccct tttataaaaa taatatcatc tcaaaagatg gaaaagtaac agggcttatt
     4681 atttacttaa agcctgatac agtttataat aatcttatag aaaaacgcga tcttgctacc
     4741 gatgaaaaag aaaaagatca aattcgtctt gccataaaag aacatcaaga caagcaaaaa
     4801 gttatcacga aacaaagtct agatactatt aaaagcatag ttcgaaatta tgaaaaaaat
     4861 aaagatacgc tctaccttgg tggcgtaagc atgatcgctg atgatatgat agcttatata
     4921 aaatctgatc ttgtgcttta tggtgtttct cttgtatttt tactaggact tgcactttat
     4981 tattttttcc gctcatggcg ctttgttttt ttacctcttt ttatttgttt tataagctta
     5041 agtgcggcta gtggagtttt tgcgctttta aattttcaaa tcacggttat ttcatcaaat
     5101 tacgttgctt tggttttaat tatcacctta agtgtagttg ttcatttgat cacgcatttt
     5161 atcgaaagca cccaaaatca tcccaaagct aaagttgagc gcatagtgct tgaaacctta
     5221 ctagcgaaag caaatcctag cctttatgcc attgttacaa cgatgatagg atttttttct
     5281 ttaatcctat caaatatcga acctatcata aaacttggca ttatgatgag tataggtata
     5341 ggtttagctc ttatctttag ttatttgttt ttagcaagta tcttagttct tttaaaacca
     5401 aaaaattatc ataaaaaaga gtttaaattt aatcttttag ccttttgcgc caaaaccgct
     5461 cttgatccta aaaagcgtcg catgatttat gaaatttcag ttcttgctat aatcttagct
     5521 ttaataggca tttcaaaact cagagttgaa aattcttttg tcaattattt caaagatggt
     5581 agtgaaatca aaaaaggact tttggttatt gataaaaatc taggtggaac cttaccttta
     5641 gaagtgatca ttcgttttcc aaataataaa aacgatcaaa atgcaagcga tactcttgat
     5701 agttttgaaa gtgaatttga aaatttagcc acacaagaaa cttattggtt tgactctaaa
     5761 aaaacacgca ttgcaaaaaa agttcatgaa tttttagaaa acaaagaatt tgtaggttcg
     5821 gttttaagtc ttaatagtct tttaacccta gggaaaaata ttaacgatgg aaaagagttg
     5881 gatgattttg cccttgcgtt tttaaatgaa aatttgcctg ccaaatttaa acaagacttg
     5941 ctttcacctt ttgtaagtat agaaaataac gagttaagat ttagcatgcg tattgttgat
     6001 tctgatccga atttaagacg taatgagttt ttaatagatc ttaaaaaaca gctcaacgag
     6061 cttgtaaaaa atgatggagt agaagttcaa atcacaggca taatggtgct ttataataat
     6121 atgctccaaa gtcttttttc atcgcaattt gatactctta tatttgtaat tttagctatt
     6181 tttatacttt ttatcattgt ttttagagat ttaaaatttt cagttgcggc tatattggta
     6241 aatgttattc ctttaagtgt ggtttttgct cttatggggc ttttaggtat tcctttggat
     6301 atgatgagta ttactatagc tgctattgct ataggcatag gcgttgatga tgctatacat
     6361 tatatttatc gttttagaga agaaattaaa aacaaaagcc tagaagaagc cattatgatt
     6421 tctcacctta gtataggttc ggcactttat tatactacca ttagcatagt tttaggtttt
     6481 agtgttatga tgagtagtaa tttcattcca acaatttatt ttggaatttt aaccgttttt
     6541 gtaatgattt tgcttttaag tggaagtttg ttcttattac caagcttttt aatcactatt
     6601 tattctaaga aaaccaagtt tccaaaccaa cataaagagc atatattaaa acaataatag
     6661 ctatatattt taaaaaattt ttcattttta tcctttattt aaaatcttta aaatgatttt
     6721 tgcaagctct aaagctttaa aacgatgaga gatattattc ttctcatcca cgctaagctg
     6781 ggctaaggtt ttatcaaaac cctttggaat aaaaaggcta tcataaccaa aaccattttc
     6841 acctttttct gtatctatta cttttccatg catggttcca tgcgtactaa attcccccat
     6901 caaacctacc atagcaatag cagcaacata atatgcctta ctttgtttaa aacctttttt
     6961 tatcatttca ttgacaagtt tatcacggtt acttttatca tcgcccttac cgctaaatcg
     7021 agcagaataa attcctggat ttccttctaa aacatctaca caaatgccac tatcatcact
     7081 taaagcgata aaatcttttt tttgcttttc atccaaagca ttaaaaaccg ctcttgcttt
     7141 aatcaaggcg ttttctttaa aagtttttcc attttcttca atctcaaaag gcattaaaac
     7201 ttcatcaaaa gcataaattt caaaatcttt taaaatttct ttaagttcta aaactttatg
     7261 tttattgctc gtagctagga taatcttcat aacaaaagct ccaaaataat atcaaaaaca
     7321 aaaatatgat tttataaaat ttatccttgt gcgtagcttt taaatacaaa atggtaaaac
     7381 gatgttaatc aatgcttaat ccatttcata gtaaaattat cctaatttaa atttcaaatt
     7441 taataggaaa ttgataatgc taaataatgt cttaccctta tctttcatag ttggaacaag
     7501 attttttggg ctttttatag ttttgccagt tttaagcctt tatgctttaa aacttgaagg
     7561 tgctaatgaa tttttagtgg gacttttagt tggtgtttac gccttaaccc aaatgatttt
     7621 acaaatgcct tttgggattt taagtgataa aattggtcgt aaaaaaacca tgctcattgg
     7681 actgattatt tttataatag gctctttaat ctgctctttt gcagaaaata tttacaccat
     7741 gcttttaggg agaatgctcc aaggtgcagg agctattgga gcagtagcta cggcaatgat
     7801 aagtgatttt atcacagaag aaaatcgtgg taaagccatg gcggtaatgg gttcttttat
     7861 aggacttagt tttgcagctt ctatggtaat ttctccttta atgagtgcaa aatggggttt
     7921 atctagcctt tttgatctta gtgcggcttt gtctctttta tgtataattt tactttatac
     7981 cgttgtacct aaagaaaata aaatcactca tgaaaatgaa aaaactcctt tttttcatct
     8041 tattaaacaa aaaaatttag cccttatgaa tcttactaat ttcatgcaaa aaatgcttat
     8101 gagtatagca tttttaagta ttcctattat tctagtaaaa catttaggct ttgcttctga
     8161 taaactttgg attgtttata gcgcttctat ggtagcaggt tttatcgcta tgggctttgc
     8221 tggaagttta ggcgaaaaaa aaggtttagc taaacaaatt ttactcttag gaattgtttt
     8281 tttcatactt tcttatcttt tttttgcttt tagtaattct attgattttt ttatcatagc
     8341 agttgtgatt ttttttatag gttttaattt acacgaacct attatgcaaa gttgtgcatc
     8401 aaaattttgt aaagttcatg aaaaaggtgc agcattaggg ttatttaatg cttttggata
     8461 tggtggaagt tttataggtg gtattatcgg agggatattt ttacatctag ataccttaaa
     8521 tcttttagct attattttag taattttagc tctaatttgg cttgtggcat tatttttctt
     8581 aaaaaatcca gctgatttta aaaaccttta tctaccttta gaaacgcctt taaatttcag
     8641 tacttttggt gaaaatttag gggttgtaga tatttataaa aactctaaaa atcttgttgt
     8701 taaatttgat agcaaactta caagtaaaga agaattagaa ggcaaattat gaaaaaaata
     8761 ttatttttat tctgttcttt ttttctagct tttgcaaaac caagtctaga gatacccaag
     8821 ctctcaaaac aagcaaaaca aaactttatt ttagaaaatg tcaaatttaa ttataatggc
     8881 acaatatata aaatttttat agctaaaaac aagaatgaaa actcaaatta taaatataaa
     8941 atcatttatt tactcgatgg aaatgccttt tttcctcttt ttttaaatct tttcaacact
     9001 cctgtcaaag aaaatctttt aattattgga ataggttatg ataataattt agcttttgat
     9061 acacaaaaac gcactaaaga ttatacgcct acaacaaatt taaataaaca aggtggaggt
     9121 agtaaagaat ttagaaattt cttaataacc caactcatcc cttatatcaa caaaatgtat
     9181 cctattgatt ttagccatca aattctcttt ggacattctt ttggaggact ttttgccatt
     9241 gatacacttc tttatgatag taagattttt agtcattatt ttattatttc accttcttta
     9301 tggtgggata atagtgagtt tttacctaat atcataaaat tacaaacttg ccctaaaatt
     9361 tacatcggat taggttcatt ggaaacaaat tcaagtatta tcaaaggtgt agctaagctc
     9421 aatgctcaaa aacttagcga aaaaatatcc aaagaaacta attgtaaaac tcattttaaa
     9481 ctttttaaaa atgaaactca tggaagtgtc atatctaaag ctatgctgtg gatgaaaaag
     9541 cttcttgatc ttaattaatc attgctttta tcatcacttt tgccttgcaa tctgcacagc
     9601 aataaagtgt tttgatttta ttctcatcat taccaaattt aggtttcatt aaattggcta
     9661 ttttttctac ggcttttttg gtcgcaaatt ctttaccaca ttctatacag gcaaaaagct
     9721 catcttttgc catggtttga tattcaaaat aagaagctct aaactccatt ccactacgaa
     9781 ataattttaa agtatctttt tcagcacaac ttaactcaca atacccacaa gtcgtacaaa
     9841 gagaagcatt aaatttcaaa gcattttctt gtttatcagc gattaaagct cctacattac
     9901 aggcacccac acaagaaaga caaagcgtac aggtgttagg attgatttct accttaccat
     9961 aacgcaacca ttcgccactt tccatactgc caaaatcttc attttttatc atttcctgca
    10021 ttcttttggc aaaattttct cttgtagtta aggtgttatt atgaaaatca tattttaaat
    10081 cttgtatgaa ttcttgctct tttaaaacat tttgcaattc tttttcatct ttagcaacaa
    10141 aaatagcttt tttttgaaat tttctctcaa aaaaagtatt taaaagtaca atagcctcgt
    10201 tgctaccacg agatacaaaa tccgtataaa aaaccaaatt tgctccacta ttttgcaaaa
    10261 gcgttaaaaa atgcatagaa gaaagccatt tttcaccctc tatcataaag ggtaaaacat
    10321 cttttggtaa agcaagattt aaattttcta aagacatttt tttaggaatg attaaaattt
    10381 ttttatcttt ataaaactca caaagggtaa agaaactttc tcttggcata ggagcataat
    10441 caagcgatcc gctaggacac acgctaatac atcctccaca acccaaacaa tccacttgag
    10501 aaaattccaa atgtttgttt tcatcatctt ttaaaatcgc cacagtagga caaatttcag
    10561 cacattttgc acaatgctca ctgcgtcttt cgtggtattg acacacacta gcattatagc
    10621 taatataagt tttataatga tattttggac ttttgctttg caaaaactca aacaatactt
    10681 caagattttc aaaatttaaa agattataac atccactttg tcttgtaaaa tctttacgca
    10741 caacgcttaa atcctcagct ttaaaaagta aaaaatcaaa atctatttcc acttcttcgc
    10801 cttgattttt aaccacagca caaagctccc ctacacttcc aaaaacagct aaaatttctg
    10861 cactgcttaa agcaataacc ttaaattcat gttcttttaa aaactctaca gtttgagcgt
    10921 caccatctgc gacaatcaaa cgattttgca cttctttgct ttgttctaaa tcaagcccca
    10981 aatcataaac gctagctctt gcttcataaa gcgttaaaac atttttactt tgctctaaaa
    11041 tttcatcttg agaattttta agataaaaat taatctcagg ggcataaatt tgtgcttttt
    11101 gatttttatc attgcaaatt aatgcttctt tatcatttgc ctgatctaaa atttcaatag
    11161 catcaggcaa agggattaaa acatcatttt ttata
//
LOCUS       DAPOLW010000049        11152 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.049, whole genome shotgun sequence.
ACCESSION   DAPOLW010000049 DAPOLW010000000
VERSION     DAPOLW010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11152)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11152)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11152
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.049"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..583)
                     /locus_tag="ROE18_000901"
     CDS             complement(<1..583)
                     /locus_tag="ROE18_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDX3651090.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNINFSLNENDNLIILG
                     KSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALN
                     PYKKIKNLIQDGLENFNLQKNDDLILEFFDFFSLKKQILKQKPYELSGGEATRVGLIR
                     ALVLNPKLLILDEITSALDIKTSKEILTFLYDYQ"
     gene            complement(576..1286)
                     /locus_tag="ROE18_000902"
     CDS             complement(576..1286)
                     /locus_tag="ROE18_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDX3651091.1"
                     /translation="MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRFLDSNFTISFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKENASKIISILEELKNNTALVCITHDLNLVNSLADEILMLE
                     KNSLNLYSLDEFLRYYNA"
     gene            complement(1283..2077)
                     /locus_tag="ROE18_000903"
     CDS             complement(1283..2077)
                     /locus_tag="ROE18_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDX3651092.1"
                     /translation="MILFKFLIILAPLIFLFLCALFAPFLASFDILSTHLENLHQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALSYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGT
                     LLSESSKAVFIGAWWMILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            complement(2064..3008)
                     /locus_tag="ROE18_000904"
     CDS             complement(2064..3008)
                     /locus_tag="ROE18_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDX3651093.1"
                     /translation="MLKRLVFSIVVAFFSTFLCFVLLHFSKGSIAYANGVNSQSKEFV
                     QRIEQNLGLDKPLLGQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSAL
                     MLLFLLSVFLALLGYSYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYEGLGSLLFKSIIFKDY
                     PVVLALIFFSVLLAAFFTFLSDIVARILNPRLRRLDFV"
     gene            complement(3008..4543)
                     /locus_tag="ROE18_000905"
     CDS             complement(3008..4543)
                     /locus_tag="ROE18_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDX3651094.1"
                     /translation="MLRWFVLLFLLFLNLEAKIPKDTLIIAVENEIARINPAYSEDHD
                     AVINLVFSGLTRFDENMSLKPDLAKSWDISKDGLVYDIFLRDDVLWHDGVKFSADDVK
                     FSIEAFKNPKNNSSIYVNFEDIKSVEILNPSHVKITLFKPYPAFLDALSIGMLPKHLL
                     ENENLNTSSFNQNPIGTGPYKFVKWKKGEYVEFKANENFYLTKVKTPRLIIKHIFDPS
                     VASVELKNGKIDAALIDVSLLNIFKKDENFKILRERSADYRALMFNLENEFLKDIQIR
                     KALNYAVDKQSIVKNLLHDYGFVANHPLERSWADSKAFKTYEYNPKKAQDLILVLGFK
                     KNDEGIFEKDGKILEFEIWTMSNDPLRVSLAGILQSEFKKIGVIAKVVAKPAGSFDYS
                     KVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTSN
                     LEERKKYYKDFIDALYENPPFIFLAYLDFALVYNKDLKGIKARTLGHHGVGFTWNVYE
                     WSK"
     gene            complement(4653..7424)
                     /locus_tag="ROE18_000906"
     CDS             complement(4653..7424)
                     /locus_tag="ROE18_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HDX3651095.1"
                     /translation="MANFKAFYNEAKYIFKDRIFNDYARCYAYGIDASCYFYIPKIVI
                     IAKNEDEIKQIIQLANTYKTPITFRAAGTSLSGQSSCDGVLVVIKFAFKKIKINKDAN
                     EITLGCGVVGIHANESLAFLKKKIGPDPATINSALIGGIINNNSSGMCCGTKDNSYKT
                     LRSIRVILANGSMLDTSDALSVARFKDENKKLINELREIKEKINANKELKDLIIKKFK
                     IKNTTGYSLNAFVDYDDEIDILAHLLIGSEGTLGFVSEVKLAVLDDLEFKACALLFFD
                     NINNAANTIKEFAKVDFVSSAEIMDYASLKAASTYDELRDILADIKEGNTCVLIQSEH
                     SNELKLDENINKIKEISKLAYKSYFSKNKAEYDLWWKIRKALLPIAASLRKAGSTVIT
                     EDVCFNIEDLADGIKSIQELFYKYGFGDNGIIFGHALAGNIHFIITPDLNNKLEFDNF
                     SNLVKEMSNIVASYGGSIKAEHGTGRMVAPFVEVEWGKQAYLINKKIKSIFDKDSLFN
                     PDVIISDDKDIYKKNIKQVSWIDEKLNTCMECGFCERFCPSNEYTITPRQRIAILREI
                     KRLESLNDDESKAKLKDIKKYYNHLVDSSCAACGVCSFSCPLGINFADFSLKYRKNNI
                     GFISKILGNLAYKNHEKTLKIAKFSLSIANKFDNLSLDNKLEKASNFLSIIPRTRAYL
                     PKVNDYELKSHKRVCNVVYFTSCLNKSFKPNEKMHDKRSLQEVFESLCKKANIGIIYA
                     PNDLCCGKAYENFQDIQDKNIQKINDFLSNIDSPIVLDHSACSAKLISDHSKYEIYDL
                     SEYLLKFIAPKLRIDKINENVGLYIMCAARKLGLNENIIKLTKLCTNGKVLIDNDTYC
                     CGFAGYKGFFKPQLNISATKGFKKFYAKTNIKRGFSTSSTCEIGLSDATGISWQHIAY
                     LLDECSEAI"
     gene            7576..7998
                     /gene="cgb"
                     /locus_tag="ROE18_000907"
     CDS             7576..7998
                     /gene="cgb"
                     /locus_tag="ROE18_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HDX3651096.1"
                     /translation="MTKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRSFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAKFYIDIEKKLYDK"
     gene            complement(8018..9649)
                     /locus_tag="ROE18_000908"
     CDS             complement(8018..9649)
                     /locus_tag="ROE18_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HDX3651097.1"
                     /translation="MPFIMELLKQNKLKLISFLLFSFITSAVGVLTLVFINDYLLKNA
                     QNIPIFYFIVLLLIFFISSTIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGK
                     ARILASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSPQIFALCVVWIMVIFI
                     TNNFLMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARL
                     KKKNSTLGNLFNNLSNNWTNVTLLALVGVEFYLALKFEWASVADATTIALSILFLRTP
                     LVSMIGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENF
                     HLNPVNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNLDEY
                     RSLISAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKNKTSVKDNELTLTKLSTGQ
                     KKRLAMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAY
                     FDSADRIFLAQNGEISELKGENIKELAKNLVEKFD"
     gene            complement(9699..10994)
                     /locus_tag="ROE18_000909"
     CDS             complement(9699..10994)
                     /locus_tag="ROE18_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDX3651098.1"
                     /translation="MRKSKFGTKEIKILGLSSLGGTLEFYDFIIFVFFAEYIANVFFP
                     KDMSEFWALLNTYGAFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFVLA
                     FIPGYETLGFLAPVLLILIRIFQGIAIGGELPGAWVFVREYCQEKQKAFFLSCLNSAM
                     ALGILLGSIVFLIINAFFSIEEIAAYAWRIAFFVGGIFGIISIYLRRFLQETPVFKQM
                     KKESSLSSFPLKDLFKEKDIVKNLFSSMMMTWVLTGCVIVLVLLMPKFMPSILNLSGV
                     EGSYLQILGILGIALGGAFMGYLVDKFGLFKICIFFSLTFVFFSFLYFYALYELKNLV
                     LVCILYSIICFLGGINVFAPILMSEVFRAKIRFSGISFSYNISYAISGGITPQLVFWL
                     NTLASKNENPFLYGMSIYMIFLALLAICAVFIVKDKIKF"
BASE COUNT         4246 a         1958 c         1242 g         3706 t
ORIGIN      
        1 gctgatagtc atataaaaaa gttaaaattt ctttagaggt tttaatatca agcgctgaag
       61 taatttcatc taaaatcaac aatttaggat ttaaaaccaa agcacggata agacctacac
      121 gcgtggcttc tcctccgctt aactcatagg gtttttgttt taaaatttgc ttttttagac
      181 taaaaaaatc aaaaaattct aaaatcaaat catcattctt ttgtaaatta aaattttcca
      241 aaccatcttg tataagattt ttgatttttt tataagggtt taaagccatt ttttgatctt
      301 gaaagcaata ctgaatttgc tttcttaaaa gtctttgttt gtttttatca agcttgtgta
      361 agttaagatt ttcataccat acctcaccct cacttggatc ttctaaaaaa caaagaattc
      421 tagctaatgt gcttttacct gcaccacttt tacctaaaat tattaaattg tcattttcat
      481 ttaaagaaaa attgatatta tcaaaaataa tatgtctttc tttttttaaa taccaatgct
      541 ttttaagctc ataaaactta cttaaattac aaactttaag cattataata ccttaaaaat
      601 tcatctaagc tatataaatt taaactattt ttttctagca taagaatttc atctgctaaa
      661 gaatttacca aatttaaatc atgagtgatg caaactaagg ctgtgttatt ttttaattct
      721 tctaaaatcg atataatctt agaagcgttt tctttatcca aagaagctgt gatttcatca
      781 caaattaaaa tttggggttg atttaataat gccaaagcta ggctcaccct tcttgccata
      841 cccaaactta attcattagc ataagaatgc cacaaacgat caagattttc aaatcctaat
      901 ttttgaaaat aagaaaaagc gtaatctttt ctttcttttt gttttaattt tgtatgagtt
      961 tttaaaacaa gatgacataa atttccaata tccaaataag gataaagact aagctctgca
     1021 tcttgcaaaa caagtgccac tttagaacga aaatttctaa gctcttcttt attaaaatta
     1081 aaaatacaag aattatgaaa acttaattca tcaaaactta ttgtgaaatt agaatctaaa
     1141 aatcttacca aagcttttcc taacaaactt ttgcccactc cactttgtcc tagtatcatt
     1201 aaagttttgc ctgtttttat atctaaatta atatccttaa gtaataaatt attcttcaaa
     1261 ctgatattta aatttcttac cttcaagatc ttatacccca aattttttgt aaaaaattac
     1321 ccaaccataa aagaggtaaa aacaacaaaa gcaagcttaa aagtggaaaa agtatcatcc
     1381 accaagcgcc tataaaaact gcttttgaag actcactcaa aagagtacct aaagttggaa
     1441 tttcaaatcc taaacccagt ccaaaaaaac tcaaagtagc ttctgtggct atagcatgaa
     1501 cgatattaaa tataaaaagt gtaaaaatca gtgtttttaa agcaggtatt aaatctttaa
     1561 aaaaagctct aaatttagtt cttccaagca ctatatttgc tttgtaaaaa tctaaatttt
     1621 caagtctttt taattcactt tctataattc ttgctatgaa acaccaatga attaaagcga
     1681 ttaaaaaaat catcaaaaac acatcagaag ttatcatact ttgaaaaaac atcataagta
     1741 aaaaagcagg caaggctaaa aaaaactcta aaatacgcat ccaaaaaaca taaaaaaaac
     1801 atcgcgctaa aaacaaatag gacaaagcaa agataataga caataaagat ccaccaacac
     1861 ctataatcaa agaatttctc aaagcaaaaa gcaaacgaga aaacaaatct ctgcctaaaa
     1921 aatcagtccc taaaatataa gtaaaattag gagcttgatg caaattttct aaatgagtgc
     1981 ttaaaatatc aaaagaagct aaaaaaggtg caaacaaggc gcataaaaac aaaaaaatta
     2041 aaggcgcaag aatgataaga aatttaaaca aaatcaagcc ttcttaatct aggatttaaa
     2101 atcctagcta caatatcact taaaaatgta aaaaatgctg caagcaaaac gctaaaaaat
     2161 ataagtgcaa gtacaacagg ataatcttta aaaataatac ttttaaaaag taaagaccca
     2221 agtccctcgt aagcaaagac actttctacc acataagttc ccatcataaa acttaaagca
     2281 cttcccccaa aataagccac aatagggctt aaagaatatt tcagaactaa aaaataaata
     2341 tctttctccc ttaaagctct agcgtataaa ttttgaataa aaatttgaga aaaactttca
     2401 ttgataaaat ttctagcaat ccttaaaaat aacgccaaat gtgataaaac gagcaccaaa
     2461 acaggcaaaa tcaaatgctc taaacgattt aaaaaatcat cttcaaagcc tatatcacta
     2521 cttcccataa caggcaaaat tttccaaaaa attccaaaaa tcaaaacaaa caataaagcc
     2581 aaaacaaaag gaggtaaagc aaaaaaatta aaagctaaaa aagtgatgat tttatctata
     2641 aaactttctt tataagaata tcccaaaagt gccaaaaaaa cactgagtaa aaataaaagc
     2701 attaaggcac taaaacccaa aataaaagta ttaaaaattc tttcttttat aagctttaaa
     2761 acactttctc cacttaaaaa agaaactcct aaatctcctt ttaaagcctt aaaaagccaa
     2821 attttatact gccctagcaa aggcttatca agccctaaat tttgttctat tctttgaaca
     2881 aattctttac tttgtgaatt aactccatta gcataagcta tactgccttt actaaaatga
     2941 agtaaaacaa aacataaaaa agtgctaaaa aatgctacga caatactaaa aactaagcgt
     3001 tttagcacta tttactccac tcataaacat tccaagtaaa acccactccg tgatgaccta
     3061 aagtccttgc tttgatacct tttaaatctt tattataaac taaagcaaaa tcaagataag
     3121 ctaaaaaaat aaaaggggga ttttcataca aagcatctat aaaatcttta taatattttt
     3181 ttctctcttc taaatttgaa gtatttcttg ctttttgcaa ggctatatcc acttttttat
     3241 catgataatg tccaaaattc caaccctcat catttaaagc actatcttgc gaactttcaa
     3301 ataccctaaa agtgtgaaaa tcaggatcta aaggacttcc ccagcctatt aaaaaactat
     3361 ctactttaga ataatcaaaa cttccagcag gctttgctac aaccttagct ataaccccta
     3421 tttttttaaa ctcgctttgc aaaattcctg ccaaactcac ccttagagga tcattactca
     3481 tagtccaaat ttcaaattct aaaatcttgc catctttttc aaaaataccc tcatcgtttt
     3541 tcttaaaacc taaaaccaaa atcaaatctt gggctttttt aggattgtat tcataagttt
     3601 taaaagcttt agaatccgcc caagaacgct ctaaaggatg attggctaca aaaccataat
     3661 catgcaaaag atttttgact atactttgct tatcaacagc ataatttaaa gcctttctta
     3721 tttgaatatc ttttaaaaat tcattctcta aattaaacat taaagctcta taatcagcag
     3781 atctttcacg caaaatttta aaattttcat cctttttaaa aatattcaat aaagaaacat
     3841 caatcaaagc cgcatcaatt ttgccatttt taagctctac gcttgcaacc gaaggatcaa
     3901 aaatatgttt gatgataagt cttggggttt ttacttttgt aagataaaaa ttctcattag
     3961 ctttaaactc tacatattcg ccctttttcc attttacaaa tttataagga cctgtaccta
     4021 taggattttg attaaaagag cttgtgttta aattctcatt ttcaagcaaa tgtttaggaa
     4081 gcattcctat gcttaaagca tctaaaaatg caggataagg tttaaagagt gtgattttta
     4141 catgagaagg atttaaaatt tccacacttt taatgtcttc aaaattgaca taaatagaag
     4201 aattgttttt aggattttta aaggcttcta tactaaattt cacatcatca gcactaaatt
     4261 tgactccatc atgccataaa acatcatctc ttaaaaaaat atcataaaca agcccgtctt
     4321 tactaatatc ccaagactta gccaaatcag gttttaaact catattttca tcaaaacgcg
     4381 taagccctga aaatacaaga ttaatcactg catcatgatc ctcgctataa gcaggattta
     4441 tccttgcgat ttcattttca actgctataa taagtgtatc ttttggaatt ttagcctcaa
     4501 gattcaaaaa caataaaaat agtaaaacaa accatctaag cacttgtaac tcctcaaatt
     4561 taaaatttta aagaattata aaataaaaaa taagaagcca caagctctat ggggggataa
     4621 tttgctttaa attatggagt tttatttatc aattaaattg cttcactgca ttcatccaat
     4681 aaatacgcta tatgctgcca agatataccc gtagcatcgc ttaatcctat ctcgcaagtg
     4741 cttgatgtac taaacccgcg cttaatattt gttttggcat aaaatttttt aaagcctttt
     4801 gtagcactaa tatttaattg aggcttgaaa aagcccttgt atccagcaaa cccacaacaa
     4861 taggtatcat tatctattaa tacttttcca ttcgtacata gctttgtaag cttaattata
     4921 ttttcattta aaccaagctt tctagcagca cacatgatat ataatcctac attctcattg
     4981 attttatcaa tgcgtaactt gggagcaata aattttaata aatactcgct taaatcataa
     5041 atttcgtact ttgaatgatc actaattaac ttagcactac aagcactatg atctaacact
     5101 atgggtgagt ctatattgct taaaaagtca ttgatttttt gtatattttt atcttgaata
     5161 tcttgaaaat tctcataagc cttaccacaa cataaatcat tgggtgcata aataatgcct
     5221 atatttgctt ttttacacaa gctttcaaat acttcttgca aacttctttt atcatgcatt
     5281 ttttcatttg gtttaaagct tttattaaga cagcttgtaa aataaaccac attgcaaact
     5341 cttttatgac tttttagctc ataatcattc accttaggca aatacgccct agttcttggt
     5401 ataatgctaa gaaaattgct tgctttttca agcttattat caagacttaa attatcaaat
     5461 ttatttgcga tacttaatga aaatttagca atttttagag ttttttcatg atttttatat
     5521 gctagatttc ctaaaatttt agatataaat cctatattat tttttctata ttttaatgaa
     5581 aaatcagcaa aattaatccc caaaggacat gaaaaagagc acaccccaca agcagcacaa
     5641 gagctgtcta ctaaatgatt gtaatatttt ttaatatcct ttaattttgc ttttgactca
     5701 tcatcattta agctttcaag gcgtttaatc tctcgtaaga tcgcaattct ttgtcttgga
     5761 gtaattgtat attcatttga tggacaaaat ctttcgcaaa atccacattc catacaggta
     5821 tttaatttct catcaatcca actgacttgt ttgatatttt tcttataaat atctttatca
     5881 tcgctaatga ttacatcggg attaaataaa ctatccttat caaagatact tttgattttt
     5941 ttattgatca aataagcttg cttaccccac tctacctcca caaaaggtgc caccatacgc
     6001 cctgtgccgt gttcagcttt tatacttcca ccataagaag ctactatatt agacatttct
     6061 ttaactagat ttgaaaaatt atcaaattca agcttattgt ttaaatccgg tgtgataata
     6121 aaatggatat tgcctgctaa tgcatggcca aaaatgattc cattatcacc aaagccatat
     6181 ttataaaaca attcttgaat gcttttaatt ccatcggcta aatcctcgat attaaaacac
     6241 acatcttcag taattaccgt tgaacctgcc tttctaagac tagctgctat aggcaagagt
     6301 gcttttctaa tcttccacca taaatcatat tcggccttat tcttgctaaa atatgactta
     6361 taagccagtt tggaaatttc ttttatttta tttatatttt catcaagctt aagctcatta
     6421 ctatgctcac tttggatcaa tacacaagta ttgccctctt taatatcagc taaaatatct
     6481 cttaactcat cataagttga tgcagctttt aaacttgcat agtccattat ttcagcagaa
     6541 cttacaaaat caactttagc aaattctttt atagtgtttg cagcattatt gatattatca
     6601 aaaaacaata aagcacaggc cttaaattcc aaatcatcca aaacagcaag cttaacttcg
     6661 cttacaaatc ccaaagtccc ttcagagcca ataagcaagt gtgctaaaat atctatttca
     6721 tcatcataat caacaaaggc attaaggcta taacctgtgg tgtttttgat tttaaatttt
     6781 ttgattatta aatcttttaa ttctttattg gcattaatct tttctttgat ctctctaagt
     6841 tcattaatta attttttatt ttcatcttta aatcgagcca cgcttaaagc atcgctggta
     6901 tcaagcatac taccatttgc caaaatcacc ctaatacttc ttaaggtttt atagctatta
     6961 tccttagttc cacagcacat tccgcttgaa ttgttattta taatccctcc aattaaagct
     7021 gaatttatag tagctggatc aggtcctatt tttttcttca aaaaagcaag actttcatta
     7081 gcatgaatgc ctactacacc acatcctaaa gtaatttcgt tagcgtcttt gttaattttt
     7141 atttttttaa aggcaaattt aatcactaca agcactccat cacaagagct ttgtccactt
     7201 aaacttgtac ctgctgctct aaatgttata ggagttttat aagtatttgc taattgaata
     7261 atttgcttaa tttcatcttc atttttagca ataatcacta tttttggaat ataaaaataa
     7321 cacgacgcat caatgccata agcatagcat ctagcataat cattaaaaat tctatcctta
     7381 aaaatatact tagcctcatt ataaaaagct ttaaaatttg ccatagtccc tctttttaat
     7441 ttattatcaa ttatataatt taataattta aagataattt taaatttata tttttgagca
     7501 taattttaac acaagtcaat ttttttctcc tttttaagat ataaaatatc tcttttacaa
     7561 caaaaaggag aaactatgac aaaagaacaa attcaaatca tcaaagattg tgtgcctatt
     7621 ttgcaaaaaa atggagagga tttaaccaat gagttttata aaataatgtt taatgattat
     7681 cctgaggtaa aacctatgtt taatatggaa aaacaaattt caggagaaca accaaaagct
     7741 ttagcaatgg cgattttaat ggcggctaaa aatatagaaa atttggaaaa tatgagaagc
     7801 tttgttgata aagttgccat aactcatgtt aatttaggag ttaaagaaga gcattatcct
     7861 atagttggag cttgcctttt aaaggctatt aaaaatcttt taaatcctga tgaagccact
     7921 cttaaagctt gggaagttgc ttatggaaaa attgctaaat tttatatcga tatagaaaaa
     7981 aagctctatg ataaataata taagcccatt ttgggcttta atcaaatttt tctactaaat
     8041 ttttagctaa ttcctttata ttctcaccct ttaattcgct gatttcacca ttttgagcca
     8101 agaaaattct atcagcacta tcaaaatatg catcatcatg tgtgatagca aagattgttt
     8161 taccttgctc ttttagcaaa ggtaaaagtt ttttataaaa aaatcttcta aaaacaggat
     8221 cttgatcagc cgcccattca tcaagcacta aaatatccct ttcttcaagc aaggctataa
     8281 gcatagctaa acgctttttt tgccctgtag aaagtttggt taaggtcagt tcattatctt
     8341 tgacacttgt tttattttta agttctaaaa actccaacca aaaagcaatt ttttcttcgc
     8401 ttgcaaaatt ttctttattt aaggttttag taaaaagatg aaaatcgcta aaaacagcag
     8461 aaataagaga tctatactca tctaaatttt tatcatctat aagcgtatca tcaacataaa
     8521 ttccgccttt gcttggctta aaaagtcctg tcaaaagcat acaaaaagtg gatttaccac
     8581 ttccattttt acctattaaa aataccaatt cacctttttt aagttctata tttacaggat
     8641 ttaagtgaaa attttcttca taagcaaatt gagtatttct aaaagaaatt tttttccatt
     8701 cactgatata atgtgttttt ttaaaacctt ctatataatc atctaattcc aattttgcga
     8761 tcttatccaa agcgattttt gccaaaagca aagtaggaaa agatcctatc atagatacta
     8821 aaggggttcg taaaaacaaa atagaaagag ctatagttgt agcatctgca acacttgccc
     8881 attcaaattt taaagctaag taaaactcta cacccactaa agccaaaaga gttacatttg
     8941 tccagttgtt tgagagattg ttaaaaagat tgcctaaagt actatttttc tttttcaatc
     9001 ttgcattatt ttcaaattca tcttcatagt aaagtttggc tctatcacga ttgatcaaaa
     9061 gttctttatg tccatctagt atattttggt aattattttg caaagcatca tcattttccc
     9121 ttgcctttct aaaatactga tatactttca tcatcaaaaa attattagta ataaaaataa
     9181 ccataatcca taccacacac aaagcaaaaa tttgtggtga aagataacat aaataaacac
     9241 tagtgcataa aatcaatata cttgattgta aaaaatcagg caatcttaaa agcccaaaag
     9301 atatatttct cacatcactt cctaaagaag ctaaaattct agccttacct actttagcca
     9361 ctcttaacaa aggggtgtct aagatctgct ttactacgcg cctttgcatt ttaaaaataa
     9421 aattttgtcc aaaaatacta agtccaagtt caactatggt agaacttata aaaaaaatca
     9481 aaagcaaaac aataaaataa aaaataggaa tgttttgtgc atttttaagc aaataatcat
     9541 tgataaaaac aagagttaaa actccaacag cgcttgtaat aaaagaaaaa agcaaaaaag
     9601 aaatcaactt taatttattt tgcttaagta attccataat aaaaggcatt tataaactcc
     9661 aaaatataat tttaattata acattttaag agtgattatc aaaattttat tttatctttt
     9721 actataaaaa cagcacaaat agccaataac gctaaaaaaa tcatatatat actcatacca
     9781 tataaaaatg gattttcatt tttactcgca agtgtattaa gccaaaaaac gagttgcgga
     9841 gtaataccgc ctgaaattgc ataagaaata ttataagaaa aagaaattcc tgaaaatctt
     9901 attttagctc taaaaacttc actcattaaa ataggtgcga acacattaat cccacctaaa
     9961 aaacaaataa tcgaatacaa aatacacacc aaaaccaaat ttttaagctc atataaagca
    10021 taaaaatata aaaaagaaaa aaatacaaaa gttaaagaaa agaaaatgca aattttaaat
    10081 aaaccaaatt tatctacaag ataacccata aaagccccgc ctaaagctat tcccaaaatt
    10141 cctaatatct gtaaataact tccttcaacc ccacttaaat ttaaaatact aggcataaat
    10201 ttaggcatca ataaaacaag cacaataaca caacctgtta aaacccaagt catcatcatt
    10261 gatgaaaata aattttttac aatatccttt tctttaaata aatctttaag cggaaaagaa
    10321 ctaagcgatg attctttttt catttgttta aaaacaggag tttcttgcaa aaatctacgc
    10381 aaataaatag aaataatccc aaaaattcca cctacaaaaa aagcaatacg ccaagcataa
    10441 gcagcaattt cttctatgct aaaaaaagca ttaatgatta aaaatactat acttcctaac
    10501 aaaattccta aagccatagc tgaatttaaa cagcttaaaa agaaagcttt ttgtttttct
    10561 tgacaatact ctcttacaaa aacccaagct ccaggcaatt ctccacctat agctatgcct
    10621 tgaaaaattc ttataagtat caataaaaca ggagctaaaa acccaagagt ttcataacct
    10681 ggaataaaag ctaagacaaa ggtaggaaga accattagta aaatacttag cataaacata
    10741 tttttacgcc caaatttatc tccaaaatgt gccataacta taccacccaa aggacgtgct
    10801 aaatatccag ctgcaaatgc tccataagta tttaataaag cccaaaattc actcatatct
    10861 ttaggaaaaa atacattggc tatatattca gcaaaaaaga caaaaataat aaaatcataa
    10921 aattctaaag ttcctcctag tgaagaaagt cctaagatct taatttcctt tgttccaaat
    10981 tttgattttc tcattgatta attaccttaa attttaaaaa cattgttttt attatactat
    11041 aatcatttcc aaaatattat ctaaaaattt aaggataaat atgtttaatt ttataaccac
    11101 tcttttaaaa accaatcttt attttttaga agaaaaaacc acaagcaaaa at
//
LOCUS       DAPOLW010000050        11016 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.050, whole genome shotgun sequence.
ACCESSION   DAPOLW010000050 DAPOLW010000000
VERSION     DAPOLW010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11016)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11016)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11016
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.050"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            1..1470
                     /gene="kdpA"
                     /locus_tag="ROE18_000910"
                     /pseudo
     CDS             1..1470
                     /gene="kdpA"
                     /locus_tag="ROE18_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit A"
     gene            1480..3525
                     /gene="kdpB"
                     /locus_tag="ROE18_000911"
     CDS             1480..3525
                     /gene="kdpB"
                     /locus_tag="ROE18_000911"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HDX3651099.1"
                     /translation="MSKKQNKLITKEILNNAIKGAFLKFDPRFMVKNPVMFMVEVGSI
                     LTLILSIFPTLFNGNSDERIYNILITFILFIILFFANFAESIAEGRGKAQAATLRQSK
                     KDSKARHIKSDGSEEMLNSSELKIGDIVLVKAGELIPNDGEIIEGTASVDESAITGES
                     APVMREAGGDFSSVTGGTTVLTDFLKIKILVGAGESFLDKMINLVEGAARQKTPNEIA
                     LNTLLIVLSLSFLMVVVSLYPFMQFLGVSLPISWLVALLVCLIPTTIGGLLSAIGIAG
                     MDRVTRFNVIALSGKAVESCGDVDTMILDKTGTITFGNRLANEFYEVQGISKEEMIKA
                     CVLSSLKDETPEGKSIVALAQKMGYELEGNDIKEFIEFSAQNRMSGVDLQDNTKIRKG
                     AFDAIRAYISEMNGKIPSDLETKVMEISNLGGTPLVVCKNEKILGVIYLKDTVKPGLK
                     ERFDELRKMGIKTLMCTGDNPLTAATIAKEAGLDGFIAECKPEDKIKAIKKEQAQGKI
                     VAMTGDGTNDAPVLTQADVGIAMNSGTQAAKEAANMIDLDSNPTKILEVVEIGKGLLI
                     TRGSLTTFSMTNDIAKYFAILPAMFSVVLPQMQILNIMHLATPKSAILSALIFNAIII
                     PLLIPIAMRGVKFKPMKSEHLLLRNLSIYGLGGMIAPFIGIKIIDIPTAWILRILGV"
     gene            3561..4050
                     /locus_tag="ROE18_000912"
                     /pseudo
     CDS             3561..4050
                     /locus_tag="ROE18_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246928.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit C"
     gene            4127..5947
                     /locus_tag="ROE18_000913"
     CDS             4127..5947
                     /locus_tag="ROE18_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
                     /protein_id="HDX3651100.1"
                     /translation="MQRQSPEQILKKLEVKAKEEEKNKLVKLKIFLGYAAGSGKTYAM
                     LSEARTLRDNGVDVVLGYIEPHDRPETMALAQGFESIANLEIPYKNIVLKEFDLDATL
                     KRKPALVLVDELAHTNAKGLRNEKRFQDIEELLKAGIDVYTTLNIQHLESLNDLVANI
                     SKIEVKERIPDRIFDEADQVELVDIEPNKLLKRMQDGKIYKEKQAKLALENFFRQERL
                     IALREIALRRLASRVNLRASEQRLINDDLAYHTGEHILVCINASNAKVIRAAARLALA
                     FHAKLSALYIKNPNIKEAKALEENIELAKSFDAKIISVYDDIARQIAEYSSLSNVSKI
                     VLGKNKDKKSLKKRFLKLLLKKHPILIYILLMKIKFLLLKYEVKKGFDFLGFLKITGV
                     LLLATFIAFVFHKFNTQPSNMVMIFILAVFASSFISDNKIFAFYSSLVSVLIYNFFFL
                     EPIFSLKVHDSGNIITFTTMFIVGFLTAVFTRRLKLQSKELTKRAYRTAILLENSENL
                     ARVKSKQELWEQLGNQALKLLNLPIIIYPINKNNILSKPLLFFNDDKQMLKNCFSADE
                     IAIAQWVATNKERAGVCTNTLPNANAMYLPIEDGKKLKGL"
     gene            complement(6049..8022)
                     /gene="uvrB"
                     /locus_tag="ROE18_000914"
     CDS             complement(6049..8022)
                     /gene="uvrB"
                     /locus_tag="ROE18_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HDX3651101.1"
                     /translation="MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNVLENKKGKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPYTLFDYFAIKDRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQMAYNKKHNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKL
                     VKELRKQMLEAAKALEFEKAAAIRDEINKLRDL"
     gene            8176..8406
                     /locus_tag="ROE18_000915"
     CDS             8176..8406
                     /locus_tag="ROE18_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651102.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            8396..8638
                     /locus_tag="ROE18_000916"
     CDS             8396..8638
                     /locus_tag="ROE18_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651103.1"
                     /translation="MADNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            8635..9072
                     /locus_tag="ROE18_000917"
     CDS             8635..9072
                     /locus_tag="ROE18_000917"
                     /inference="COORDINATES: protein motif:HMM:NF019575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HDX3651104.1"
                     /translation="MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDY
                     EMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEKLFYCLNDCDYSLLDTPIYSDFK
                     SWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI"
     gene            9054..10907
                     /locus_tag="ROE18_000918"
     CDS             9054..10907
                     /locus_tag="ROE18_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HDX3651105.1"
                     /translation="MQRSDIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKSKKN
                     LKAIVLKECQKPDFKTIEIKEITKYFLTPLQLELANFIVYYYASKLGFVLGFFETSPK
                     YECQKMFFKDTPKLSNQQQNALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMQKRLEVYFKDNFFLWHSKISKKKKQEYLECFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIKVVLGSATPSLTS
                     FYKQKSFRLKGTFFESKKHFLYDENELSITPMLLSELEKSLKHQKQAIVFLPTRANFR
                     QIICKDCGETIKCPFCSIAMSMHKKKNILKCHYCNYTSLIEQNCPSCKGEMLEARKIG
                     TAELLELLQNALPLAKIAKFDSDEITSVKKLNTILKDFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFERY
                     IENYDAFLKDELENRKDLYPPFKRLLRVLIEDKDQKSAQKLCEKFASQFRNIKQVELV
                     GYGICGVEMLYGKYRFYLLLRSENHKALVAIENYILQFKNASADIDPIDFV"
     gene            complement(10917..>11016)
                     /locus_tag="ROE18_000919"
     CDS             complement(10917..>11016)
                     /locus_tag="ROE18_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HDX3651106.1"
                     /translation="FENELNHLKQTHPHIIDSWKYYKEFEKIYKDK"
BASE COUNT         3729 a         1469 c         1951 g         3867 t
ORIGIN      
        1 tgatttttta tttacaagat aaactttttt aaatcccaat tcgataaatt ctatgataag
       61 gggatttgaa tttaaatact gtaattagtt ttattacaaa tacaaacctt cagcattata
      121 gtggagagaa tgctttaagt ttgctttcgc aaaatacagg cattttgctt gctatgtttg
      181 tttcaagtgc gagtggatat tctgcttgta tggctttttg tcgtgcttta tgtagtatgc
      241 aaatgggaaa tttttatgaa gattttacgc gtattattac gcgtttgatg ttgcctttaa
      301 gttttatttt ggctgtaatt tttatctctg aaggcgtggt gtaaaattat cacgcaaatt
      361 ttagcgtgct tactttagaa aataaatttc aaagcattgc cacaggtcct gttgcagctc
      421 ttgagtctat aaaacattta gggacaaatg ggggtggttt ttttggtact aattcaagca
      481 tgccttttga aaatcctact ttacttacaa attttttgca aattttatcc atgatgctta
      541 ttcctagtgc ctgtgttgta gcttttggat tgatggttta tcatagaaaa gaaatacaag
      601 gttttgctct tatgggaaaa gaagaagaag ggggggggtt atttttggtg caatggggat
      661 tatttttatc atttctttgc ttttaattta ttttagcgaa aaaatgtcaa atccaaattt
      721 ggattctttg ggtttaaatg caaatttggg aaatttggaa ggtaaagaaa taagatttgg
      781 cacagatggt tcgagtttat ttagtgctgt aactactgct tttactacag gaagcgtcaa
      841 taatatgcac gatagtttaa atcctttaag catcagtgct actttgctaa atatgatgct
      901 aaatgtagct ttcggtggcg aaggagtagg gcttatgaat atgattattt atgtgctctt
      961 aaccgtgttt atttgtgcat taatgatagg tagaactcca gaattcttgg gtaaaaaaat
     1021 agaaagcgca caaatgaagc ttatagcttt ggtaattctt atccatcctt tattaatcct
     1081 tgttttaagt gcattagctg ttgtttttgc aaaagatagt ataagcaatc ctagctttca
     1141 tggcttggct caaattttgt atgaatttag ttcttcggca gcaaataatg gttcaggact
     1201 tgaaggttta aaagatgata atttattttg gaatttaagc acagcttttg ctatgttttg
     1261 tgggcgttat ttggttttaa tagctcagct tgctatagct ggatcgcttt tggctaaaaa
     1321 tacacaagaa aatactgcaa attctttaaa aacggataat ttaactttta tgtttgtgct
     1381 tgtttgtatt atatatattt ttgctgcact tacttttttc cagtgcttac tttatcaagc
     1441 gttgcagaat atttatcttt atggcattaa ggagagtcaa tgtctaaaaa acaaaataaa
     1501 ctcattacaa aagaaatttt aaataatgcc ataaaaggag catttttaaa atttgatcca
     1561 cgctttatgg taaaaaatcc tgttatgttt atggtggaag ttggatcgat tcttactttg
     1621 attttaagta tttttcctac tttgtttaat ggaaattctg atgaaagaat ttataacatc
     1681 ttaatcactt ttattttatt tataatcttg ttttttgcaa attttgcaga aagtattgca
     1741 gaaggaaggg gtaaagccca agcagctacc ttaagacaaa gcaaaaagga ttctaaagct
     1801 agacacataa aaagtgatgg cagtgaagaa atgcttaatt ctagcgagtt aaaaataggt
     1861 gatatagttt tagttaaagc aggtgaactt atacctaatg atggagaaat tatagaaggt
     1921 actgcaagtg ttgatgaatc agctattaca ggtgaaagtg cacctgttat gcgtgaagcg
     1981 ggcggtgatt tttcttctgt tacaggtggg actacggttt taactgattt tttaaagatt
     2041 aaaattttag ttggagctgg ggaaagtttt ttagataaaa tgatcaatct tgtagaaggt
     2101 gctgcgcgtc aaaaaactcc aaatgaaatt gctcttaata ctcttttaat tgtacttagt
     2161 ttgagttttt tgatggtggt tgtaagttta tatcctttta tgcaattttt aggcgtgagt
     2221 ttgcctattt catggttagt agcattgctt gtatgtctta ttcctacaac tataggggga
     2281 cttttatcag ctataggaat agcaggtatg gatagggtaa cgcgttttaa tgtgatcgca
     2341 ctttcaggca aggctgttga aagttgtggt gatgttgata ctatgatttt ggataaaaca
     2401 ggaacgatta cttttggaaa ccgtttggca aatgaatttt atgaagtcca aggtataagt
     2461 aaagaagaaa tgattaaagc ttgtgtttta tcctctttaa aagatgaaac tccagaaggt
     2521 aaaagcatag ttgcattggc tcaaaaaatg ggttatgaat tagaaggtaa tgatattaaa
     2581 gaatttatcg aatttagcgc tcaaaataga atgagtggtg tggatttgca agataataca
     2641 aaaattcgca aaggtgcttt tgatgctata agagcttata taagcgaaat gaatggaaaa
     2701 attcctagcg atttagaaac taaggtaatg gaaatttcaa atcttggcgg cactcctttg
     2761 gtagtgtgta aaaatgaaaa aattttagga gtgatttatc taaaggatac agtaaaacca
     2821 ggacttaaag agcgctttga tgagcttaga aaaatgggca taaaaacttt aatgtgtacc
     2881 ggagataatc ctttaacagc agctactata gctaaagaag cagggcttga tggatttata
     2941 gcagaatgca agcctgaaga taaaataaaa gccattaaaa aagaacaagc ccaaggtaag
     3001 atagtagcca tgacaggaga tggaaccaat gatgctccag ttcttacaca agctgatgta
     3061 ggtatagcta tgaactcagg aactcaagca gccaaagaag cagccaatat gatagatctt
     3121 gattctaatc ctactaaaat tttagaagta gttgaaatag gaaaaggttt gcttattact
     3181 agaggtagtc ttacaacttt tagtatgaca aatgatattg ctaagtattt tgctatttta
     3241 cctgctatgt ttagtgtggt tttacctcaa atgcaaattt taaatattat gcatttggct
     3301 accccgaaaa gcgctatttt atcagcactt atttttaatg ctattattat acctttgctc
     3361 atacctattg ctatgcgtgg agttaaattt aagcctatga aaagcgagca tttgctttta
     3421 agaaatttga gtatttatgg tttaggtggt atgatagcac cttttatagg gataaaaata
     3481 attgatattc ctacagcttg gatacttaga attttaggag tgtgatatgc ttagaaactt
     3541 tgcttagttt ttttgtggta atgctaatat tgtgtactct tgtttatcct tttgctttaa
     3601 atacagttgc aaaatttatt tttccttatc aatcaagtgg aagtttagta gataaagaag
     3661 gtcgtccgac tttggatgta agcaaagcgg taggttcaaa gcttttgggt caagatttta
     3721 ataaacctta ttttctacat tcaagaacat ctgtgtcaaa ttacaataca agcgatacaa
     3781 atgaaagcag tgtaagttca ggtggattta attatgctat gtcaaatcct gctttaaaag
     3841 agcgtgtgca aaaatatttg caaaaatttt tagatgaaaa tccgcaaatt acaaaagaac
     3901 aaattccttt ggatttcagg atcaggtctt gatcctcata tcagtcttca agcagcccta
     3961 gtgcaaattc ctaggataag tcaatcttca aaaatcacca aagaagaact agaaaaaatc
     4021 attcaagaaa atactgagtc taaattttag ggatttttgg ggaagaaaag gttaatgttt
     4081 tagctgttaa tatagctatt gctaaagcca tgaaaaaaga ataaacatgc aaagacaaag
     4141 tcctgaacaa attcttaaaa aacttgaggt taaagctaag gaagaagaaa aaaacaaact
     4201 tgtaaaatta aaaattttct taggttatgc tgcaggttct ggaaaaactt atgctatgtt
     4261 aagtgaagcc agaactttaa gggataatgg agttgatgtt gttttaggct atatagagcc
     4321 tcacgataga cctgaaacaa tggctttagc acaaggtttt gaaagtatag ctaatcttga
     4381 aattccttat aaaaatatag tattaaaaga atttgattta gacgctaccc ttaagagaaa
     4441 gcctgctttg gttttagtag atgagcttgc acacactaat gctaaaggct tgcgtaatga
     4501 aaagcgtttt caagatatag aagaacttct aaaagcaggg attgatgttt atactacttt
     4561 aaatatacaa catttagaaa gcttaaatga tttagtcgct aatatcagta agatagaagt
     4621 taaagagcgt attcctgatc gtatttttga tgaggctgat caggttgaac ttgttgatat
     4681 tgaacctaat aagcttttaa aaagaatgca agatggtaaa atttataagg aaaaacaagc
     4741 taaactagca cttgaaaatt tctttcgcca agaaagactt atagctttgc gtgagattgc
     4801 cttaagaaga cttgcttcaa gagtgaattt aagagcaagt gaacaaaggc ttattaatga
     4861 tgatttagct tatcatactg gagagcatat tttagtttgt attaatgctt caaatgcaaa
     4921 ggttattcgt gcagctgcaa gacttgcttt agcttttcat gctaaattga gtgcgcttta
     4981 tataaaaaat cccaatatta aagaagcaaa agccttagaa gaaaatatag aactagctaa
     5041 aagttttgat gctaaaatca ttagcgtata tgatgatata gcaagacaaa ttgcagagta
     5101 ttcaagcctt agcaatgtct ctaaaattgt tttaggtaaa aataaagata aaaaaagttt
     5161 aaagaagaga tttttgaagc tgttgctaaa aaagcaccca atattgattt atatcttgtt
     5221 aatgaaaatc aaatttctac tcctaaaata cgaagtaaaa aaaggttttg attttttagg
     5281 ttttttaaaa atcacaggag ttttgctttt agcaactttt atagcttttg tatttcataa
     5341 atttaatact cagccaagta atatggttat gatttttatt ttagcagttt ttgcttcttc
     5401 ttttatttct gataataaaa ttttcgcctt ttattcttct ttggtaagtg ttttgattta
     5461 taattttttc tttttagaac ctatttttag tcttaaagtt catgatagtg gaaatattat
     5521 tacttttaca accatgttta tagttggatt tttaacagct gtttttacta gaagattaaa
     5581 attgcaatct aaagaactca ctaaaagagc ttatagaaca gctattttgc ttgaaaatag
     5641 tgaaaattta gcaagagtga aaagcaaaca agagctttgg gaacaacttg gaaatcaagc
     5701 tttaaaatta ttaaatttgc ctattattat ttatcctata aataaaaaca atattttatc
     5761 gaaacctttg ttgtttttta acgatgataa gcaaatgtta aaaaattgtt ttagtgctga
     5821 tgagattgct attgctcaat gggttgcaac aaataaagaa agagcaggtg tttgtacaaa
     5881 taccctgcct aatgctaatg ctatgtattt acctatagaa gatgggaaaa aactaaaggg
     5941 gttataggta tagttttaaa agaaaaacgt cccttgcaag actttcagta tgaaatttta
     6001 agtgctttac ttaatgaggc aggagttaga acaagggata tatttttatt ataaatccct
     6061 taatttatta atctcatctc taatagcagc agctttttca aactcaagtg ctttagctgc
     6121 ttcaagcatt tgttttctta actctttgac aagtttagct ctttcgctag caggcatttt
     6181 ttctagtttt ttacctttgc gataaatttc gcctaaatcc tcttcatttt tcaaactctc
     6241 ttcaatatgg cgtttgactg aagttggcgt gatattgtgt tttttattat aagccatttg
     6301 aagtttgcgg cgttcattgg tggtatccat agcttcttgc atggattttg tgattttttt
     6361 gcaaaaaagc aaaaccttac cattgacatt tctagctgct cttcccatgg tttggattaa
     6421 acttgtagtg cttcttaaaa atccttcctt atctgcatcc ataatggcaa tgagtgaaac
     6481 ttcaggtaga tctagtcctt ctctaagtaa gttaatgcca attagcatat caaaagcacc
     6541 gcttcttaaa cctcttatga tttcattgcg ttctatagca tcgatgtctg agtgcatgta
     6601 tttgactttt atgccaagct ctaaataata ccttgtaagt tcttcagcga gttttttagt
     6661 tagcacagtc actaaaacac gttcattcct ttgtatgact tttttagcct catcaaataa
     6721 aatttcaacc tgattatcac tatcttttaa ttctattaaa ggatcaagca gtcctgtagg
     6781 acgcatgatt tgatgaaaga tgttttcttt actcagttca agttctaaag gtgcaggtgt
     6841 ggctgaaaca aaaagaaatt gacaattttt atggataaat tcatcaaaca ttaaaggacg
     6901 gttatccaag gctgaaggca aacgaaaacc ataatccacc aaggtttgtt ttctgcttct
     6961 atctcctgca aacatacctc taaattgtgg taaagataca tggctttcat cgactataac
     7021 aagaaatttt ctatctttaa tcgcaaaata atcaaaaagc gtataaggag tatcaccttc
     7081 tttaagccct gttaaatgcc ttgcatagtt ttcaactcct ttacacattc ctgtgcttgt
     7141 aagcatttca agatcaaatt caaccctttg tttaaggcgt tgatattcta cgagtttatt
     7201 ttcatgttca aaataagcaa ggcgttcgtt aagttctgct tttatgtctt ttatcgcttg
     7261 ttttagtctt gtttcaccta cactaaactg gcttgtagga tagagtatga agcgttttaa
     7321 atctttgcct tttttatttt ctaaaacatt gtaatgatac atagcatcaa gctcatcgcc
     7381 aaaaaattca agtcttacta cttcatcttc ataataagct ggataaatgt ctataatatc
     7441 tccttgaact ctaaaatctg cacgatcaaa aaaattatca tttcttttat aacccatatc
     7501 tacaagtttt tttaaaagtt ctttttgtga aatttgcata cctagttcaa agattaaaac
     7561 catgcctatg tattcatttg gattaccaag tccataattt gctgaaacac tagctatgca
     7621 aactacatct tcataactta aaagagaagc agtagcactc agtcttaaac gctctaagtc
     7681 ttcattagtg gagctgtctt tttctatgaa aacatcagtg cgtgggatat aggcttcagg
     7741 ttgataataa tcataataag atataaaata ttccacatga tttttagaaa aaaagccttt
     7801 aaattcgcta taaagttgtg cacaaaggct tttgttgtga ctcatgataa gagtgggtat
     7861 attaagttct ttaatgacat ttgccatggt aaaggttttt ccgcttcctg taacgcctag
     7921 taaggtttga tatttgttgc ctttttttat actttttact atacctttta tggcttcttg
     7981 ttgatcagga ctaggtttaa attcgctggt aagttctaac atttttctac tttattttta
     8041 tttttgaaaa aattttaaaa gaaaatgctt taattaaaaa ttaattgaca ataaaaacct
     8101 aaatttaaat ttttttctgc tacaatatca aataatattt tccataaatt acaaattttt
     8161 taagaaggca aaaatatgtt tgatgaaaaa ataatcaata ctatgacaga taaagtaaat
     8221 gaattaattg aaaagtataa cgaagtttgc gaagccaatg aggctttaag aaatgagctt
     8281 gtaagcgtta aagcacaaaa tgaagcaaaa agtaatcaaa ttatgcgttt ggaagaagaa
     8341 cttaaatctc gcaatataga aagcgaagat atttataaga aaatagaggc tgttcttggc
     8401 agataatcta aaacaagtca ttgttaatgt taatgcaaaa gatttcattg ttaagtgcag
     8461 tgaagaattt gcaaattttt tagaagatga tatcgctttg atttcagggg gtactaaaaa
     8521 aatagaactt aaacgctttg tagatgcgtt tgttaaaaaa agttatgaaa attatattct
     8581 agaaagagaa cttaagaaac taataaaagc aatcaatgaa gaactcccga caaaatgaac
     8641 aaagctttta ctctgcttga gcttgttttt gtgattttga ttttgggaat tttatcaagc
     8701 ttatctttat cttttatcaa tactacaaaa gatgaggtta aaattttaaa attaaaaatg
     8761 gactatgaaa tgctaagctc agctcttgct ttaatgcgta gtcaaatgag acttaaaaat
     8821 ttaaattttc cagaaatttt agataatgcg caaaacaatc aagccaaaga aaaactcttt
     8881 tattgtttaa atgattgtga ttattctttg cttgatacac ctatttattc tgattttaaa
     8941 tcttggataa aaataggtaa aaatcactat agatttgcat taaacgccaa agagatggtt
     9001 gaatttattt atgattctaa agaaggtttg ttaaagtgta taggaagttc tagatgcaaa
     9061 gatctgatat aagatattat gaacttgcaa tttgtggttt gtatttggat aatttaactt
     9121 ttcatagttt tgatgaaatc aaacctttaa cacaagtatt agtggattta aaatctaaaa
     9181 aaaatcttaa agccatcgta cttaaagaat gtcaaaaacc tgattttaaa actatagaaa
     9241 ttaaagaaat tacaaagtat tttctaactc ctttgcaact tgaattggca aattttattg
     9301 tttattatta tgcttcaaaa cttggttttg ttttgggttt ttttgaaact agtcctaagt
     9361 atgaatgtca aaaaatgttt tttaaagata cccctaagct aagcaatcaa caacaaaatg
     9421 ccttaagttt tcttcaaaaa gaaaataatt ctttgctttt tgctgacaca ggtagtggta
     9481 agactgaaat ttatatttct ttaataaaag agtgtttaga acagggtaag caagctttac
     9541 ttttgatgcc agaaatcgca cttactccac aaatgcaaaa gcgtttagaa gtgtatttta
     9601 aggataattt tttcctgtgg cattctaaaa tttcaaagaa aaaaaagcaa gaatatttag
     9661 agtgtttttg caagggagaa gtgcttttag tagcgggtgc aagatcggct ttgtttttac
     9721 cttttagaaa tttaggactt attgtagtag atgaagaaca cgataattct tataaggctt
     9781 ctaaccagcc ttttatcaat gcaagagatt tagcactttt tttgggtcaa aaaaataata
     9841 ttaaagtggt tttaggttct gcaaccccat ctttaacgag cttttataaa caaaaaagtt
     9901 ttagactaaa aggaactttt tttgagagta aaaaacattt tttatatgat gaaaatgagc
     9961 tcagtataac acctatgctt ttaagcgaat tagaaaaaag tttaaaacat caaaaacaag
    10021 ctatagtgtt tttacctaca agggctaatt ttaggcaaat catttgcaag gattgtggag
    10081 aaacgataaa atgtcctttt tgttctattg ctatgagtat gcataaaaag aaaaatattt
    10141 taaaatgtca ttattgtaat tatacttctt taatagagca aaattgtcca agttgcaaag
    10201 gagaaatgtt agaagctaga aaaattggga ctgctgaact tttagagctt ttgcaaaatg
    10261 ctttgccttt agcaaaaata gcaaaatttg atagcgatga aatcacaagc gttaaaaagc
    10321 ttaatactat tttaaaagac tttaatgaaa ataagatcga tatacttatt ggcacttcta
    10381 tgcttgctaa aggacatgat tatcatagtg tggatttgag tgtgatttta gggcttgatg
    10441 aatatttgtt gcgtcctagt tttagagcga gtgaagaaac tttagcttta gctatgcaag
    10501 ttgcaggcag ggcagggcgt aaaggcgaag caagagtact tttgcaaaca aaaaatagag
    10561 ctttttttga aaggtatata gagaattatg atgctttttt aaaagatgag ttagaaaata
    10621 gaaaagatct ttacccccca tttaaacgcc ttttaagagt tcttatagaa gataaagatc
    10681 aaaaaagtgc acaaaaactt tgtgaaaaat ttgcttctca atttagaaat atcaaacagg
    10741 tagaattggt aggctatgga atttgtggag ttgaaatgct gtatggaaaa tatcgttttt
    10801 atttgttgct tagaagtgaa aatcataaag ctttagtggc aattgaaaat tatattttgc
    10861 aatttaaaaa tgcaagtgcg gatattgatc ctattgattt tgtgtaagtg atatgattat
    10921 ttatctttgt atattttttc aaattcttta taatatttcc aagaatcaat aatatgagga
    10981 tgtgtttgtt ttaaatgatt tagttcattt tcaaat
//
LOCUS       DAPOLW010000051        10358 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.051, whole genome shotgun sequence.
ACCESSION   DAPOLW010000051 DAPOLW010000000
VERSION     DAPOLW010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10358)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10358)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10358
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.051"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..658)
                     /locus_tag="ROE18_000920"
     CDS             complement(<1..658)
                     /locus_tag="ROE18_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HDX3651107.1"
                     /translation="MKLKLNFLPYFSFIPKKLNTNSIIFKIIKVFFIAILLSNSIYLS
                     FFENIFTQTISPFLAIWGLVLLLKSKNSKQYFWIGFFVGILWFWWIGLSSIYFNLNYL
                     VPIIPIIIGFIYGLLFRLCYLLKFDFLRLCGIFCISFIHPLGFDWLNWGIFTVYGFFD
                     PSYRGIICIFLIAYFIYEGYISRYYKIAIVLILFFSGFQYNEKQAQTLNLNYKLINTN
                     I"
     gene            631..903
                     /gene="yajC"
                     /locus_tag="ROE18_000921"
     CDS             631..903
                     /gene="yajC"
                     /locus_tag="ROE18_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDX3651108.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            896..2476
                     /gene="secD"
                     /locus_tag="ROE18_000922"
     CDS             896..2476
                     /gene="secD"
                     /locus_tag="ROE18_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HDX3651109.1"
                     /translation="MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKNNNTRFWFGYRRR"
     gene            2476..3447
                     /gene="secF"
                     /locus_tag="ROE18_000923"
     CDS             2476..3447
                     /gene="secF"
                     /locus_tag="ROE18_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HDX3651110.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILENQGTFQNLSVTEFGSNEEVTIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFEIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            3457..5886
                     /locus_tag="ROE18_000924"
     CDS             3457..5886
                     /locus_tag="ROE18_000924"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HDX3651111.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDALARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYTEELLKDLEELKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDVLNKIKVIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYMQKLGKLINSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQSCGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDEKSVKYWMSVDQYIGGIEHAILHLLYARFFQKALRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEVFVKDTLNLAVSINGKKRAEFEISSSASKEEILAFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            5883..6395
                     /locus_tag="ROE18_000925"
     CDS             5883..6395
                     /locus_tag="ROE18_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651112.1"
                     /translation="MKKILIFCIGLFLGACGYIPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMVISKLGRKLALKHEADDVINVKMNNLELIPLAYDKNGYVISYKAK
                     LNLDFNVVFKDGSSQAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIA
                     IKGQKRDSKY"
     gene            6379..7776
                     /locus_tag="ROE18_000926"
     CDS             6379..7776
                     /locus_tag="ROE18_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651113.1"
                     /translation="MIPNTNEIAKQTLIALKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTIRSLEELISFLISVLNRQSGKQFSEFFDFLYTIS
                     KTLQISKDKKIRDLAKVTSIRISKTMDSESIYLLTKKWKELERNYDENDLEEQARKYG
                     ISKYDDYDSVIKKLLVKLEERSYEHFSELLCLGLNPSLVEDLKIQGFIQNLTQKPFVI
                     GEENFKNELMEFINHRIMVDNMYVQKNLNFFNDNLKKIYELLVLLNKSNEKNMDFINT
                     LKPDENGEVKLSFEDLKLKFKQLGEKITSLNNQIEFTQSLEEREAWSVLKELDKMDEN
                     FNKYKVNYSLALFSIVNYRFIMEKYGMGSLNEIFVRFKKILKDSCSEFDELWMIDEKS
                     YLIVSPGKSKDEITQLVNTNLKTIENFRFIYKQDIITPKIHVAYLDKQSKPSINILDE
                     LIKQIAAVNEQHNES"
     gene            7742..8926
                     /locus_tag="ROE18_000927"
     CDS             7742..8926
                     /locus_tag="ROE18_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HDX3651114.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENLDYKIGHYTSPHIFSFNERFYLDGKIANDEELEQ
                     AHIRLEEIFKQDLQKLSYFEYATFLAMILFQKCDFIVLEAGVGGEYDATSIFERRMSI
                     FTRIGFDHIQILGNSLEDIARTKLKVMAPIALISDEQEQNVLNLAKKIAFLKKANLQV
                     SSLNPFLKEKFEIYCKKFVLPYFLKHNLKLALKACEILTSQEKTLEALKKLQELNLQG
                     RCQEISPNFFVDVGHNPMAAKAMLDKFQGEKINLIYNAYLDKDIFQILNTLKPIIDTI
                     QIYKYKSAERKLADDEIYSIASKLGIQCKEFVKLEENKKNLVFGSFMLVEIFLKEWCG
                     KK"
     gene            8913..9815
                     /locus_tag="ROE18_000928"
     CDS             8913..9815
                     /locus_tag="ROE18_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDX3651115.1"
                     /translation="MVKNKFTITITDINGSRHFYLNQIIKKIVFYTIAFIVLFLVFSG
                     FYIKYLDSKLSDISEKREELLKKSKELELSNSQMQKSIEEKTQQYAAIEDKIASFEEA
                     LGLEVENNLTISARLDNLQLTNEQQLGILGQIPNGWPIENKGITGNFGWREHPLLKRR
                     EFHPGIDLRAEIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMMRKEV
                     VKAGQFVNKGQLIGYSGNTGLSTGPHLHYEVRFINKTLEPLYFLNLQRKNMNDFFNQE
                     RRVPWQSLIKAVSAQHPALAQKQQ"
     gene            9752..10147
                     /locus_tag="ROE18_000929"
     CDS             9752..10147
                     /locus_tag="ROE18_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HDX3651116.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFTSMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            10147..>10358
                     /locus_tag="ROE18_000930"
     CDS             10147..>10358
                     /locus_tag="ROE18_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HDX3651117.1"
                     /translation="MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNA"
BASE COUNT         3820 a         1194 c         1904 g         3440 t
ORIGIN      
        1 agatattagt attgatgagt ttatagttta aattaagagt ttgagcttgt ttttcattat
       61 attgaaatcc actaaagaat aaaataagaa caatggctat tttataatat cttgatatat
      121 aaccctcata gatgaaatat gctattaaaa atatgcaaat aataccacga taacttgggt
      181 caaaaaaacc ataaactgta aaaattcccc aattaagcca atcaaatcct aaaggatgaa
      241 taaaacttat gcaaaaaatt ccacaaagcc ttaaaaaatc aaattttaat aaataacata
      301 atctaaaaag tagtccataa ataaaaccaa tgataattgg tataattggc actaaatagt
      361 ttagattaaa ataaattgaa gataaaccaa tccaccaaaa ccaaagaatc cctacaaaaa
      421 aacctatcca aaaatattgt ttagaatttt tactttttag aagtaaaact aacccccaaa
      481 tagctaaaaa tgggctaata gtttgtgtaa aaatattttc aaaaaatgat agataaatag
      541 aatttgaaag taaaattgca ataaaaaaga cttttattat tttaaaaatg atagaattag
      601 tgtttaattt ttttggaata aaggaaaaat atggcagaaa attcaatttt aacttcattg
      661 ttacctcttg tagtgttatt tgcaattttt tatttcttgg tgatcagacc gcaacaaaaa
      721 caagcaaaag cacataaaca aatgcttgag tctttgcaaa aaggagataa aatcatcact
      781 aatggcggac ttatttgtga agtcgtaaaa ccagaggagg attttatcaa agttaagctt
      841 aatgaagaca atgttactgc aaaaatttca agagaattta tagcaaagaa aattgatgcg
      901 taattctaaa atcaattatc gcttgattat ttttatagcg gtatttattt ttggagtggc
      961 tttttcactc ccttcttttt tgcagtcaga acgtggtgcg aagattaatt tagggcttga
     1021 tttgcaaggc gggctttata tgctcttagg tgtagataat gaagaagctg taaaatctaa
     1081 aataaaatca attgcatctt cattgagtta ttcttttaat aaagaaaata ttttaaatga
     1141 tggcttaaat acccatgatg atattttaga atttactttg cttgataatg cagatattgc
     1201 aaaagttgaa aatttgctta aagaaataaa aggaattaat atacaaagtg aaaatatgca
     1261 ctataaaatt tcttttacct cagaagaagt aaaaaatata gaaaattttg cacttttgca
     1321 agcagttgaa accataagaa ataggcttga tcaatttggt ttagcagagc caacagttgc
     1381 taaacaaggt gatgataaga ttttggttga acttgcaggg attaaaacca aagaagatga
     1441 actaagagca aaagaacgca tcacaaaagc agcacatttg caacttatgg aagttgatga
     1501 ttctaaaatg ggtcaagctt ctacaatgag cgatgctgag gctgcgagtt atggactgat
     1561 tttagtgcct gattctagaa atccaaattt aaaatatacc ttaaaaagta tacctatttt
     1621 agatggatct atgcttactg atgctagagt agggattagt gataagagta attatcctgt
     1681 gattaatttt actttaaatg ccgagggttc taaaaaattt gctgattata caggagcaaa
     1741 tgttggaaag cgtcttgcta ttgtacttga taataaagta tattctgctc catctatcaa
     1801 tgaacgcata ggcggaggta gtgggcaaat cagtggagct tttactcaag aagaagcacg
     1861 cgatgtggcg gtagctttaa gaagtggagc tttgcttgcg cctgtaaaat tacttgaaca
     1921 aagaagcata ggaccatctt taggtgctga tagtattaaa atgagtatga tagccttaat
     1981 cggtgcatcg gtttttattg tagtatttat gatgatgtat tacggtgtgg caggaatttt
     2041 tgcaaatatt gcaatgctag ttaatgtttt ggtagtagtt gccgttatgg ctatgtttgg
     2101 agcaacttta actttaccag ggatggcagg acttgtttta actgtgggta tggcagtaga
     2161 tgcaaatgtg attatcaatg agcgtatacg agaactcttg cgagatggag taaatataag
     2221 agttagtata gaacaaggtt ataaaaatgc tatgagtgcg attatagatt caaatatcac
     2281 ttctttagtt acttcggtag cactttatgc ctatggaaca ggagcagtta aaggttttgc
     2341 tgtgactttg ggaattggta tcgttgtttc tatgattaca gctattttag gaactcacgg
     2401 aatgtttgat tattttatgc aacgcataga aaaaaataat aatacaagat tttggtttgg
     2461 ctataggaga agataatgca gttttttagc gaaaagaaaa tttatgattt tatgagaatg
     2521 cgttttgctg ctatttccct ttcttttatt ttgttttttg gttctattta tttactttgg
     2581 gataggggtt tgcaatatgg cattgatttt agcggaggaa ctttagttca gcttaaatat
     2641 gaaaatgcag ctcctataac gcaaattcga gaaattttag aaaatcaagg aacttttcaa
     2701 aatttatctg taactgagtt tggaagcaat gaagaagtaa ctatacgctt tttaggaagt
     2761 aatgataatg taagcaatga tataggtgag catataagca ctcttttaaa ggatacggga
     2821 aaatttgaag tgcgtcgtgc tgatgtggta ggtccaaaag taggtgatga acttagaaat
     2881 aaaggactta tggctatagc tgtatctttg atagcaattt taatttatat agcgttgcgt
     2941 tttgagtggc gttttgctct tgcggctata atcagtgaaa ttcatgatgt tgtgattact
     3001 ttaggagcaa tttctttatt tgaaattgat gtcaatctag atactttggc tgctgtttta
     3061 actgtgcttg gatactcttt gaatgataca attattattt ttgatagaat cagagaaggt
     3121 attaaaacaa gtaaaaaaac cgaacttgca cctattatta atgaaagtgt ttcagcaact
     3181 ttatcaagaa cggttttaac ttcagggttg actttagcaa ccgttgtgat actttatttc
     3241 tttggcgggg aaatgataca aggattttct ttggctttaa ttgtaggtat tatagcggga
     3301 actttaagct ctatttttgt tgcaagtccg acattattat ggtttaaatt tagtgtgctt
     3361 gagtttagaa ataaagaaat tgaaaaagca aaaagaaaac aagataaaga acgcaatcgt
     3421 gcaatgtatg aaaaaggaac tgtgtaagga gaatttatgg cttatgaagc aagtttaata
     3481 gaaaaaaaat ggcaaaaaat ttgggatgaa aatgaatatt ttgagccaaa agatgactta
     3541 aatttgccta aaaaatatat tttatcgatg tttccttatc ctagtggacg cattcatatg
     3601 gggcatgtaa gaaattatac tataggtgat gctttggcaa gatattatcg caagataggt
     3661 tttaatgttt tacatcctat aggttttgat agttttggca tgcctgctga aaatgcagct
     3721 attaaacata aaattcatcc taagtcatgg acttatgaaa atatagctta tatgaaaaaa
     3781 gaactttttt ctttaggttt ttctttttct aaaaaaagaa tgcttgctac ttcagatcca
     3841 ctttatacaa aatttgagca agaatttttt attaagatgt ttgaaaaagg tttgatttac
     3901 actaaagaag caaatgtaaa ttggtgtgaa caagatcaaa cggttttggc taatgagcaa
     3961 gttgaagacg gaaaatgttg gcgttgtggt catgaagtag tgcagaaaaa aatgccaggt
     4021 tattatgtaa aaatcactgc ttatactgag gaacttttaa aagatttaga agaattaaaa
     4081 gataaatggc ctaatcaagt tttaactatg caagaaaatt ggattggtaa aagcgaaggt
     4141 ttggaatttt ctttaaattt agacgaagaa agcaagcaaa aaaccaaaga aagttcttta
     4201 gaagttttta ctacaagagc agatacaatt tatggagttt cgtatatcgc tttagctcca
     4261 gaacataaga ttgttcaaaa tttgctttca caaaatttat taaatcaaga tgtattaaat
     4321 aaaatcaaag ttattcaaaa tcaaagccca agagaaagac aaagttctga aaaagaaggt
     4381 tattttttag gaatttatgc cattcatcct ttaagcggag aaaaaattcc tttatgggtg
     4441 gctaattttg tcttggctga ttatggtagt ggagcggtta tggctgttcc agctcatgat
     4501 gaaagagatt ttgaatttgc aacaaaatat aatcttgcca tcaaacaagt tattcaaact
     4561 caagaaaatt taccttatat gcaaaaatta ggaaaattaa ttaatagtca agaatttgat
     4621 aatcttgatt gtaatgaagc aagattaaaa atcatttctc agtttgaagc taaaaatata
     4681 ggaaaaaggg ttgtaaattt taaaattcgt gattggggtg tttcgcgtca aagatattgg
     4741 ggtgcgccta ttcctatgat taaatgtcaa agttgtggta tagtacctca aaaactagaa
     4801 aatttaccta ttactctgcc cgaagatgtg caaattacag gtgagggtaa tccacttgat
     4861 aaacatccaa cttggaaaaa ttgtatctgt cccaaatgtg gcaaagaggc tcaaaaagaa
     4921 agcgatactt tagatacttt ttttgaaagt tcttggtatt ttgcacgttt tgcaagtgat
     4981 gagaaaactt ggcaggaaaa agctttagat gaaaaaagtg taaagtattg gatgagtgtg
     5041 gatcaatata taggtggtat tgaacatgca atcttgcatt tactttatgc gagatttttc
     5101 caaaaagctt taagagattt gggttattta acacaaaatg aaccttttga tagactttta
     5161 actcagggta tggtgttaaa agatggtgct aaaatgtcaa aatcaaaagg caatgttgta
     5221 gatcctgatg agattataga aaaatacggt gctgataccg caagactttt tatacttttt
     5281 gctgcgcctc cggctaaaga gcttgaatgg aatgatgatg cggttgaagg ggcttataga
     5341 tttatttgca aactctatga tagggcgcaa aatgttaaaa aaggtgagct tgtagaatta
     5401 aaacaagaaa atttaaacaa agaagaaaaa tatgcaagat taaaggtata tgaagctttg
     5461 aaaaaatctt ttgaagttta tcatcaaagt tttgctttta atactttaat tgcagcttgt
     5521 atggaagctt taaatgcttt agcactttgt aaaaatgaag ctttggagca agaggctttt
     5581 tatattattt taaatatttt agagcctatt attcctcatg tttgttttga gcttagcgag
     5641 gagcttttta aatgtaaaaa tttcaaaaaa ttagaactta aagaagaggt ttttgtaaaa
     5701 gatactttaa atttagctgt aagtattaat ggtaaaaaaa gggctgaatt tgaaatttca
     5761 agtagtgcga gcaaagaaga aattttagct tttgcaaaag aaaatactgc taaatggctt
     5821 gaaggcaaga gtatagttaa agaaatttat gtggaaggaa agctagttaa tctagtgatt
     5881 aaatgaaaaa gattttaatt ttttgtattg gtttattttt aggtgcttgt ggatatattc
     5941 ctacatcaaa aatcgctaat aatattttcg atgagaaagt ttatgttaat gttgaattaa
     6001 gtcaacaaga cccaaaaaat agtatctatg ttgccgatac tttaaaagaa atggtaattt
     6061 caaaattagg gcgtaagctt gctttaaaac atgaggcaga tgatgtaatt aatgttaaaa
     6121 tgaataattt agaacttatt cctttagctt atgataaaaa tggttatgtc attagttata
     6181 aagctaaatt aaatttagat tttaatgttg tctttaaaga tggttcaagt caggctttta
     6241 gtacaagtgg aagttataat tttgaaattt ctccaaatag tattattagt gattctgcaa
     6301 ggtatgaggc tattcgagca gcttcaagcg aggcatttga tgagtttatt tccgtaattg
     6361 ctattaaagg gcaaaaacgt gattccaaat actaatgaaa tagcaaagca aactttaatt
     6421 gcattaaaag aaagaaaact aaaaccaact cctgaaaatt atacggaaat ttttgaagaa
     6481 ttatctttaa aatatggtat cacaagctca aataaagcta aacttgacaa atacaaaacc
     6541 ttgcttttac cgatttatca acaagaatta aattctaaaa ctataagaag tttagaagaa
     6601 ctaattagtt ttttaatttc tgttttaaat agacaaagcg gaaaacaatt tagtgaattt
     6661 tttgattttt tatatactat atctaaaact ttgcaaataa gtaaggataa aaagataaga
     6721 gatttggcta aggtgacttc gattagaatt tctaaaacta tggatagtga aagtatttac
     6781 ttgcttacta aaaaatggaa agagcttgaa agaaattatg atgaaaatga cttagaagaa
     6841 caagctcgta aatatggcat tagtaaatat gatgattatg atagcgtgat taaaaaactc
     6901 ttagtcaagc ttgaagagcg tagttatgag cactttagtg aattattatg cttgggttta
     6961 aatccttcat tggtagaaga tttaaaaatt caaggtttta tacaaaattt aacacaaaag
     7021 ccttttgtaa taggcgaaga aaattttaaa aatgaactaa tggaatttat aaatcatcgc
     7081 ataatggttg ataatatgta tgtccaaaaa aatttaaatt tttttaacga taatctaaaa
     7141 aaaatctatg aattgcttgt cttacttaat aaatcgaatg aaaaaaatat ggattttatc
     7201 aataccttaa aaccagatga aaatggggaa gtaaaactta gttttgagga tttaaaacta
     7261 aaatttaaac aacttggaga aaaaattaca tctttaaata atcaaattga attcacgcaa
     7321 agcttagaag agagagaggc ttggagtgtt cttaaagagc ttgataaaat ggatgaaaat
     7381 tttaataagt ataaagttaa ttattcttta gctttatttt ctatagtaaa ttaccgtttc
     7441 attatggaaa aatatggtat gggaagtttg aatgaaattt ttgttcgatt taaaaaaatt
     7501 ttaaaagatt cttgtagtga atttgatgaa ctgtggatga tagatgaaaa gagttatttg
     7561 attgtttcgc caggaaaaag caaagatgaa attacacagc ttgtaaatac aaatcttaaa
     7621 actatagaaa attttagatt tatttataag caagatatta taactcctaa aattcacgtg
     7681 gcttatcttg ataagcaaag taagccaagt attaatattt tagatgagtt aataaagcaa
     7741 attgcagcgg ttaatgaaca acataatgaa agttgagaat tttttagctc aaaaaagtat
     7801 aaattacgat aaaattgatc gttttttgat gtttagaatg tatgaaaaat ataagaaata
     7861 ttttaaaaat attcctataa tccaacttat aggcacaaat ggtaaaggta gcacgggtag
     7921 atatttaacc caacttttag aaaatttaga ttataaaata gggcattata ctagcccgca
     7981 cattttcagt tttaatgaaa gattttatct tgatggtaag attgcgaatg atgaagaatt
     8041 agaacaagct catataagac ttgaagaaat ttttaaacaa gacttgcaaa aattaagtta
     8101 tttcgaatat gctacttttt tagctatgat tttatttcaa aaatgcgatt tcattgtttt
     8161 agaagcagga gtgggtggag aatatgatgc tacttctatt tttgaaagaa gaatgagtat
     8221 ttttacaaga attggatttg accatattca aattttgggc aattctttag aagatattgc
     8281 aagaaccaag cttaaagtta tggcacctat agcacttata agtgatgagc aagagcaaaa
     8341 tgttttaaat ttagcaaaaa aaattgcttt tttaaaaaaa gctaatttgc aagtttcctc
     8401 cttaaatcct tttttgaaag aaaaatttga gatttattgt aaaaagtttg ttttacctta
     8461 ttttttaaag cataatttaa agcttgcatt aaaggcttgt gaaattttaa cttcgcaaga
     8521 aaaaacctta gaagctttaa aaaagttaca agagttaaat ttacaaggaa gatgccaaga
     8581 aatttctcca aatttttttg ttgatgtggg tcataatcct atggctgcta aggctatgct
     8641 tgataaattt caaggagaaa aaataaatct tatttataat gcttatttgg ataaggatat
     8701 ttttcaaatt ttaaatacat taaagcctat tattgataca atacaaatat ataaatataa
     8761 aagtgcagaa cgaaagctgg ccgatgatga aatttatagt attgcatcaa agctaggtat
     8821 acaatgcaaa gaatttgtaa aattagaaga gaataaaaaa aatctagttt ttggttcttt
     8881 tatgctggta gaaatttttt taaaggagtg gtgtggtaaa aaataaattc actattacca
     8941 ttacagatat taacggttca agacattttt atttaaatca aataatcaaa aaaatagttt
     9001 tttatactat tgcttttatt gttttatttt tagtttttag tggtttttat atcaaatatc
     9061 tcgatagcaa acttagcgat atcagtgaaa agcgtgagga gcttttgaaa aaaagcaaag
     9121 aattggaatt atctaattcg caaatgcaaa aaagcataga agaaaaaact cagcagtatg
     9181 cagctataga agataaaata gcttcttttg aagaggcttt gggcttagaa gtagaaaata
     9241 atcttacaat tagtgcaaga cttgataatc ttcagcttac caatgagcag caacttggaa
     9301 ttttgggaca aattcctaat ggatggccta ttgaaaataa aggcattaca ggaaattttg
     9361 gctggagaga gcatccgctt ttaaaaagaa gggaatttca tcctggtatt gatttaagag
     9421 cagaaattgg tacccctatt tatgcaccag caagtggagt agtggaattt tcaggttata
     9481 gtgataatgg ctatggctat aatgtaattt tattgcataa ttttggtttt aaaacagtat
     9541 ttgctcatat gatgcgcaaa gaagtggtca aagcaggtca atttgttaat aaagggcagt
     9601 tgataggtta tagtggtaat acaggtcttt ctacggggcc gcatttgcac tatgaggtaa
     9661 ggtttattaa taaaacttta gaacctttgt attttttaaa tttgcaaaga aaaaatatga
     9721 atgatttttt taatcaagaa aggagagttc catggcaatc tttaataaag gcggtatcag
     9781 cccaacatcc agctctagct cagaaacaac agtaatttct tcaggtgcga gaattgaggg
     9841 taaattttat tttacttcta tgctccatgt tgatggagag ttaagtggca ttattcattc
     9901 tgaaagcatt gtggttatcg gaaaaaatgg aaatttaaaa ggtgaattac aagcagataa
     9961 aattgtagta aatgggtgtt ttgaagggca acttgaggct aatagtttag aaattttagc
    10021 gggcggagtt gttaatggtg atatttcaac gcaaaaaatt tctatagaaa atggcggtcg
    10081 ctttaatgga actagtaaaa ttaaagaaga tactatcaaa cttattgaaa ataacaacga
    10141 agaataatgc aagcttcatt ttatgaatac ttacaaaatc caaaaatttg tgaacttttt
    10201 ctttgtaaag atgaaaaaca agcagattta ctcgctcaag tttcacgatt taagggttta
    10261 aaaacctttg ttttacctga ttttagagcg cagtttggag atgatttaag ggctttttct
    10321 aaagaacttt ttgatctttg taagatttta aatgctta
//
LOCUS       DAPOLW010000052        10069 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.052, whole genome shotgun sequence.
ACCESSION   DAPOLW010000052 DAPOLW010000000
VERSION     DAPOLW010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10069)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10069)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10069
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.052"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(49..135)
                     /locus_tag="ROE18_000931"
     tRNA            complement(49..135)
                     /locus_tag="ROE18_000931"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(99..101),aa:Leu,seq:caa)
     gene            316..2568
                     /gene="flgL"
                     /locus_tag="ROE18_000932"
     CDS             316..2568
                     /gene="flgL"
                     /locus_tag="ROE18_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HDX3651118.1"
                     /translation="MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQSYVKDNSLDADKDFEYDDSKLDFPPTTLYVQGTRPDGTSFKSAVLVKPEDTL
                     EDVMENIGALYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADDKTE
                     LNNIIQAAQDEGITMEDVTNRVMTAALGNPNNGDITNLNNPVTIQINGQNFEIDLKQT
                     DFIKSKMTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMA
                     GDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNS
                     GVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVD
                     VSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSL
                     TIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNT
                     TMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTT
                     ISQLSLLNYM"
     gene            2678..5518
                     /locus_tag="ROE18_000933"
     CDS             2678..5518
                     /locus_tag="ROE18_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HDX3651119.1"
                     /translation="MLAPGMGEWVYKANLFLFGEFAYYYPFFLFILNYVYYKRNYKLA
                     NFTRRELFGIGFAFFSSLLLFAVFYPNSGYILELAYAIFSTILGHTGSGIFALLLLLF
                     SLVLLFPKFAKEILKIELDFTYLLKVEQAFKSLLMRVFGGENEKEDVGKSEPIVPKLN
                     ILQDSIYGNLQINKKGETNNLEQIIKDSNINASKNSITTAKENFEKLKNQILDETIEI
                     DKQSLKESRSFVHEHSQQVRNFAQKASKMSISLDEDFNFISEEEVDMIPERFLKPKKL
                     EDIKQIDTNKNLDEPSYKRKNIEIPVSNQEVKPKIFTKELELRENLIKKEKLEQEYKA
                     YQNEILENKVKQEIKKLEEYDAINSSDIIEGNKYSFNSPKTIKTETQESDKINENKNL
                     DKADNIFEFAPIVEELNHPYIEPTPIKNINEIVIEEKNTLDFIQNTETKIDNEKTNDQ
                     EIKLQKAVLAKEIAINQALLREIEQGEIEKPKDFTLPPLDFLANPKEHKQEINESEID
                     KKIYNLLEKLRRFKIGGDVISTYVGPVVTTFEFRPSADVKVSRILNLQDDLTMALMAK
                     SIRIQAPIPGKDVVGIEVPNDEIQTIYLREILQSEVFKNAKSPLTIALGKDIVGNAFV
                     TDLKKLPHLLIAGTTGSGKSVGINSMLLSLLYRNSPKTLRLMMIDPKMLEFSIYNDIP
                     HLLTPVITDPKKAVNALSNMVAEMERRYRLMADAKTKNIENYNEKMKELGGEELPFIV
                     VIIDELADLMMTAGKDVEFYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPSR
                     ISYKVGQKIDSKVILDAMGAESLLGRGDCLFTPPGTSSIVRLHAPFASEFEIEKIVDF
                     LKDQQSVEYDESFLKDQQSVGVTTNESFDGEADELYEEAKRVILEDGKTSISYLQRRL
                     KIGYNRSANIIEQLTQNGILSEPDAKGQREIL"
     gene            complement(5604..5876)
                     /gene="rpsO"
                     /locus_tag="ROE18_000934"
     CDS             complement(5604..5876)
                     /gene="rpsO"
                     /locus_tag="ROE18_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HDX3651120.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLITELNLRDK"
     gene            6051..6461
                     /locus_tag="ROE18_000935"
     CDS             6051..6461
                     /locus_tag="ROE18_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HDX3651121.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSITLEDIMKNNGKK"
     gene            6448..8622
                     /gene="flhA"
                     /locus_tag="ROE18_000936"
     CDS             6448..8622
                     /gene="flhA"
                     /locus_tag="ROE18_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HDX3651122.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAAASQSGAGGTTAAPAKKSEEEILKEEEYKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGALGVAPVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGIIRIEL"
     gene            8631..9677
                     /locus_tag="ROE18_000937"
     CDS             8631..9677
                     /locus_tag="ROE18_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HDX3651123.1"
                     /translation="MKIYHLSHTDLDGYACQFIVNFYFKNVKFYNSNYGKEINENFNS
                     IIGDIEKDENFGKAIILITDLNLNLNQCEEFEKICKEKNTKIFLLDHHQSGEECAQKY
                     SWYLLDSKRCATKIVYDFFSKICTPVLELSKFVDVVNAVDIWLSEDENFELGKVFLGL
                     IANAKEINRVMFKESQIDYMFFLLDKAWKFIGKENANILLDNATHFIKKDYFARKNDD
                     TLSNLISYFVVEKLSELKENFSIEYEGHKGILTSNIGNTSVIGNDFLVKNPDYDFFID
                     VSSRKTLSFRANGKIDVSLMAKNLVGGGGHKNASGGLFATFKDGANYNYIKAQIIDLI
                     KSKELKKENNESKQ"
     gene            9661..9903
                     /locus_tag="ROE18_000938"
     CDS             9661..9903
                     /locus_tag="ROE18_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651124.1"
                     /translation="MNQNNNKTLKNELEDLQYELSIVLEAMLLYAGVKREKLENAIEA
                     YIDNIDNVLENSNKEGVDEILEVVEFLKNKYKDFFQ"
BASE COUNT         3737 a         1361 c         1729 g         3242 t
ORIGIN      
        1 cttggcaagg ttgtgctcta cccctgagct attcccgcaa aaaataagtg gtgcccgagg
       61 tcggactcga accgacacaa ggttgccctt accagatttt gagtctggcg cgtctaccag
      121 tttcaccact cgggctcatt tttaagattt aaagctaaaa ttatactttt ttaggctaaa
      181 aaatacttta aaaataaaaa gtattttcaa aaagacaata taaaattata taatttaaat
      241 ttttggaaca gttattgctt ttgtttatta gcaatgtttg aaaagatttt aactttaata
      301 ctttagagga aaaaaatgag aattacaaat aaacttaact tcacaaatag tgtgaataat
      361 tctatgggcg gtcaaagtgc tttatatcag atatctcaac aacttgcttc aggtttgaaa
      421 atacaaaatt catatgaaga tgcaagcact tatatagata atacgcgtct tgaatatgaa
      481 attaaaacgt tagaacaagt aaaagaatca acaagtagag ctcaagaaat gactcaaaat
      541 agtatgaaag ctttacaaga tatggttaaa cttcttgaag attttaaagt taaagtaacc
      601 caagctgcaa gcgatagcaa ttctcaaacc tcaagagaag ctatagcaaa agaactagaa
      661 cgtataaaag aaagcatagt tcagcttgca aataccagtg ttaatggtca gtatcttttt
      721 gcgggttctc aagttgcaaa caaacctttt gattctaatg gaaattatta tggagataaa
      781 aataatatta atgtagtaac tggagctgga actgaaagcc catacaatat accaggttgg
      841 gatttatttt ttaaagcaga tggagactat aaaaaacaaa taagcactaa tgttagtttt
      901 acagataatc gttgggattt aaataaagac cctgataaaa ctaaatatct cacaggagat
      961 tctaaatggc aacaacttat cggacaaagt tatgtaaaag ataatagctt agatgctgac
     1021 aaagactttg agtatgatga tagcaaacta gattttcctc caacaactct ttatgttcaa
     1081 ggtacaagac ccgatggaac aagttttaaa agtgctgtac tcgtcaaacc cgaagatact
     1141 ttagaagatg taatggaaaa tattggagct ctttatggta atactccaaa taataaagta
     1201 gtagaagtaa gtatgaatga tagtggtcaa attcaaatta cagatctaaa gcaaggtaat
     1261 aataaactcg attttcatgc tgtagctttc acaccacaag ctgatgataa aactgaatta
     1321 aataatatta tccaagcagc acaggatgaa ggcattacaa tggaagatgt tacaaacagg
     1381 gttatgactg ctgcactagg aaatcccaat aatggagata ttacaaattt aaataatcct
     1441 gtaaccattc aaattaacgg acaaaacttt gaaattgatt taaaacaaac tgattttatc
     1501 aaaagtaaaa tgacagatac agatggaaat gctgctaatg gagctgatta cgataatgtg
     1561 tattttgaaa aaaatggcaa tactgtttat ggtaatgttt ctcaagttat caaaggaagc
     1621 aatgcttatg ccactgattc aaccaaactt agcgaggtaa tggcaggaga tagcctaaat
     1681 ggtactactt taaatttaaa agtcaattcc aaaggtggaa attcttacga tgttactata
     1741 aatttacaaa cttcaactgt aagctatcct gatcctaata atccaggtca aaccataagc
     1801 tttcctatta tgcatactaa tcctgcaact ggaaatagtg gggttgttac aggatcaaat
     1861 gatattactt atggtcaaat taatgatatt ataggtatgt ttgctgcaga taaaattcct
     1921 acaacaacca tacaagccaa taatggtcaa attaataatg cagattatac ccaaatacaa
     1981 caactcatga aagattcaca agctactgtt gatgtaagta tggattataa aggtcgtatt
     2041 agtgttactg ataaactttc atcaggaacc aatatagaaa tttctcttag tgattctcaa
     2101 agtggccaat ttccagcacc tccttttacc acaacttcta ctgtacaaaa tggtccaaat
     2161 tttagtttta gcgcgaataa ttctttaact atagatgagc caaatgtgga tattattaaa
     2221 gatttagatt caatgattga tgctgtttta aaaggcaata tgagagcaga ctccgaaagt
     2281 gaaaacccta gaaatacagg tatgcaagga gctttagaaa gacttgatca tttagcagat
     2341 catgttagca agcttaatac aactatggga gcatatcata atactatcga aggtgttaat
     2401 acacgcacat cctttttaag cgttaatgtc caaagtataa aatcaaatgt gattgatgta
     2461 gattatggtg aggcaatgat gaatttaatg caagttcaac ttgcatatca agcttctctt
     2521 aaagctagta caacaatttc tcaacttagc ttattaaatt atatgtaaaa ttttttatgg
     2581 tataatttgg ctttgatttt attttcaagg aaagaatatt aaaaaagaag ccatttttac
     2641 cagctccacg cttgttattt tttatctttg tctttgtatg ctagcacctg gcatgggaga
     2701 atgggtttac aaggctaatt tatttttatt tggagaattt gcgtattatt atcctttttt
     2761 cttatttatt ttaaattatg tttattataa aagaaattac aaattagcta attttacaag
     2821 aagagagctt tttggtatag gatttgcctt tttctcgagt ttgcttttat ttgcagtttt
     2881 ttatcctaat tcaggctata tactagagct tgcttatgcg attttttcta ctattttggg
     2941 gcatactggg agcggaattt tcgctctttt acttctacta ttttctttgg ttttattgtt
     3001 tccaaaattt gcaaaagaaa ttttaaaaat agaattagat tttacttatt tattaaaagt
     3061 agagcaagct tttaaatctt tacttatgcg tgtatttggt ggagaaaacg agaaagaaga
     3121 tgtaggtaaa tcagaaccta tagttccaaa attaaatatt ttgcaagata gtatttatgg
     3181 aaatttacaa ataaacaaaa aaggggaaac caataactta gaacagataa ttaaagatag
     3241 caatatcaat gcaagtaaaa attcaattac cacggccaag gaaaattttg aaaaactaaa
     3301 aaatcaaatt ttagatgaaa ccatagagat tgataaacaa agtttaaaag aatcaagaag
     3361 ttttgttcat gagcattctc aacaagtgcg aaatttcgca caaaaggcta gtaaaatgag
     3421 cattagtctt gatgaagatt ttaattttat ttcagaagaa gaggtagata tgattcctga
     3481 acgtttttta aaacctaaaa aacttgaaga tataaagcaa atagatacaa ataaaaattt
     3541 agatgagcca agttataaac gtaaaaatat tgaaattcca gtttctaatc aagaagttaa
     3601 accaaaaatt tttacaaaag agcttgaact tagagagaat ttgataaaaa aagaaaaact
     3661 agaacaagaa tacaaagcct atcaaaatga aattttagaa aataaagtaa aacaagaaat
     3721 taaaaaatta gaagaatatg atgcgataaa ttcaagcgat attatagaag ggaataaata
     3781 tagttttaat agcccaaaaa caattaaaac agaaacacaa gaatcagaca aaataaatga
     3841 aaataaaaat ctagataaag cagacaatat ctttgaattt gctcccattg tagaagagtt
     3901 aaatcatcct tatatagaac ctactcctat aaaaaatata aatgaaatag ttatagaaga
     3961 aaaaaataca ctcgatttta tccaaaatac agaaactaaa atcgataatg aaaaaacaaa
     4021 tgatcaagaa attaaacttc aaaaagcagt tttagccaaa gaaattgcta ttaaccaagc
     4081 tttattgcgt gaaatagagc agggcgaaat agaaaaacca aaagatttca ccttgccgcc
     4141 attagatttt ttagctaatc caaaagaaca caaacaagaa atcaatgaaa gtgaaataga
     4201 taaaaaaatt tataatcttc ttgaaaaatt gcgtcgtttt aaaataggcg gcgatgttat
     4261 aagcacttat gttggtcctg tggtaactac ttttgaattt cgtcctagtg cagatgtgaa
     4321 agtaagtcgt attttaaatt tacaagatga tttaactatg gctttaatgg caaaatcaat
     4381 ccgtattcaa gctccaatac caggaaaaga tgttgtaggt atagaagttc caaatgatga
     4441 aattcaaacc atttatttaa gagaaatttt acaaagtgaa gtttttaaaa acgctaaaag
     4501 tcctttaacc atagctttag gtaaagatat agtaggcaat gcttttgtaa ccgatcttaa
     4561 aaaacttccg catttactca tcgcaggaac gacaggtagt ggtaaaagtg tggggataaa
     4621 ttctatgctt ttaagtcttt tatatcgcaa ctctccaaaa accttgcgtt tgatgatgat
     4681 agatcctaag atgcttgaat ttagcattta taatgacatt cctcatcttt taactcctgt
     4741 tatcacagat ccaaaaaaag cagtcaatgc gctttcaaat atggtagctg aaatggaaag
     4801 acgctatcgc ttaatggctg atgcaaaaac caaaaatata gaaaattaca atgaaaaaat
     4861 gaaagaatta ggcggagaag aacttccttt tattgtagta attatcgatg aacttgctga
     4921 tttgatgatg actgcgggta aagatgtaga attttatata ggaagacttg cgcaaatggc
     4981 aagagcaagt ggaatccact tgattgtagc tacacaacga ccttctgttg atgttgtaac
     5041 aggactaatt aaagcgaatt taccaagtag aatttcttat aaagtagggc aaaaaattga
     5101 ctctaaagtt attttagatg ctatgggtgc tgaaagttta cttggaagag gggattgttt
     5161 atttactcct cctggaacaa gctctatagt gcgtttgcat gcgccttttg caagcgaatt
     5221 tgaaatagaa aaaatcgtgg attttctaaa ggatcaacaa agcgtagaat atgatgaaag
     5281 ctttttaaag gatcagcaaa gcgtaggtgt tacaacaaat gaaagctttg atggggaagc
     5341 agatgagctt tatgaagaag ctaaaagagt aatcttagaa gatggaaaaa caagcatttc
     5401 ttatttacaa cgccgtttaa aaatcggcta taaccgctct gcaaatatta ttgaacaact
     5461 tacgcaaaac gggattttaa gcgaacctga tgccaaagga caaagggaaa tcttgtaaga
     5521 tttttcttgt gtttttgata tataaaactg attacaaaag aagaaattta aaaggcaaaa
     5581 gccccgtaaa aagggcttaa aaattattta tctctaagat ttaattcagt aattaactta
     5641 ctataagaat tataatcttt tcttttaaga taagataaaa gtctttttct ttgacctaca
     5701 agttttagaa gtcctaatct tgatgaaaag tcttttttgt agatttttaa atgttctgta
     5761 agttctgcaa ttcttgcagt taaaagagct acttgaactt ctgttgaacc agtatcacct
     5821 ggttttttag cgaatttcgc aactatttct gcttttttgg ccgaatccaa agccatgata
     5881 gacctcctga ttggtaaaat aataaaatta aagaactgta attttatctt aaaaagcaaa
     5941 aaataaactg aatttatctt ttttagaagg ttttgtcaaa atttaagtct ttttctaaga
     6001 attatttatt ataattacag ctatttctgt agttataaca aggagaatct gtgctattta
     6061 ccaaagctag cgaatacgct ttactttctt taatttatat ttctcaaaaa gaaacacctc
     6121 aagatgtaga ttctttagct ttagagcttg atattcctaa aagtttttta gctaaaattt
     6181 tacaaacttt agctaaagat ggcttgttaa aatcctttaa aggggcaaaa ggtggttttg
     6241 ttttaatcaa agaaccaagt caatatacta taaaagaaat tgttaatagt gctgaaaaaa
     6301 aggatatcag tgtatttgaa tgcagtggtg gcacttgtcc aaataataaa gaagaaaatt
     6361 gcaccttaat gcctatgtta gtaaatttac aaaataaagt agatgaattt ttagattcta
     6421 ttactttaga agatattatg aaaaataatg gcaaaaaata aaatagtcga tttagttttt
     6481 cctttcttgg ggcctttaat cgctcctgtt ttaaaagcta aaagcttgac tattgttggt
     6541 tttttagttt gtattttagc tattattata gttcctttac caagtcctat tttggacttt
     6601 ttcttggctt taagtatagc tttatcggta ttaattattt taatttctat ttatataccc
     6661 aaaccgacag atttaacaac ttttccaact ttaatcttga ttatcacttt atttaggctt
     6721 tcattaaata tagctaccac aaggatgatt ttaagcgaag ggcaaaacgg ccctgaagct
     6781 gtgagtgaga ttatagcagc atttggagaa tttgttgttg gtggaaatat ggtcattggc
     6841 gtgattgtat tttgtatttt agtattgatt aatttcatgg ttgtaacaaa aggtagtaca
     6901 agggtttctg aagtacaagc aagatttaca cttgatgcga tgccgggtaa acaaatggct
     6961 attgatgcgg atttaaatgc aggacttatt gatgaacaaa ccgctagagc aagacgtcaa
     7021 gaagttattg ctgaggcaaa cttctatggt gcaatggatg gttcttctaa atttatcaaa
     7081 ggagatgctg ttgcaggaat tatcataact attataaata tcataggtgg ttttttaata
     7141 ggatcttttc agcacgatat ggctttaagc gatgctgctt ctacctatac tattttaacc
     7201 ataggtgatg gacttgtatc tcaaattcca gggcttatta cttctactgc aaccgctata
     7261 attatcactc gtgcaagcaa agatgaggaa aattttgcag aaggaacttt aactcaactt
     7321 ttaagcgaat atcgcacgct tttaatagta ggttttgtac tttttatctt tgcgttagtg
     7381 cctggtttgc caactttatc cttgggcttt atggctttag tatttttaag ccttggctat
     7441 cttaccaagc aggttaagga aggtaaaatt gatataacta cagttaaaaa aagcaaacca
     7501 agtgccgcag ctgcatctca aagtggagca ggtgggacaa cggcagcgcc tgctaagaaa
     7561 agcgaagaag aaattctcaa agaagaagag tacaagatta acgatatact caaagttgaa
     7621 attttagaac ttgaacttgg atacggactt attaagcttg ctgaaaacga acttacagaa
     7681 agaattcgct caatgagaag aagtattgct gaaagtttag gatttttaat gccaaaaata
     7741 agaataagag ataatttaag acttaaacca aatgagtata gttttaaact caagggcgtg
     7801 tctatagcaa gtgctgaaat ttatccggat aaatatttag ccatggatag tggttttatc
     7861 acagaagaga tagaagggat tgctacaaaa gaacccgctt ttaactctga tgcactttgg
     7921 attgatgcga atttaaaaga tgaagcaaca ttaaatggct atatagtaat agatcctgca
     7981 agtgttattt caacacatat gagcgaactt atcaaagcgc acgcaagcga acttctcaca
     8041 cgccaagagg tacaaaatct tcttgataag gttaaaaatg attatccaat catcgtagaa
     8101 ggtgctttag gtgttgcacc tgtaagtctt attcaaaaaa ttctcaaaga cttgcttaag
     8161 catcacatac caattaaaga tatgcttact attttagaat ctgtaagcga tatagcagaa
     8221 gtaagcaaga gttttgatat gattattgaa catgtaaggg cgtccttagc taggatgatt
     8281 acaaatatgt atttagatga taaaggaaat ttggatattt ttatcttaga ctctgctagt
     8341 tctgcggttt taatggaaaa tgtacaattt agagatggaa gttatcactt gcctttaagt
     8401 gtagctcaaa caggtacttt agtagatact ctaagggctg aagttgccgc agtagcaaat
     8461 ggtcgtatca agccttttat actttgcgtt gaaccgcagc ttagaaaatt cattgctgat
     8521 atttgttata attttagcat taatatagta gtgttaagtt ttgcagaaat tgcagaaaat
     8581 acaaatttta ataccgaggg tattattagg atagaacttt aaggaatata atgaaaattt
     8641 atcatctttc acatacagat cttgatggct atgcttgtca atttatagta aatttttatt
     8701 ttaaaaatgt gaaattttat aattctaatt atggcaaaga aattaatgaa aattttaact
     8761 ctattatagg cgatatagaa aaagatgaaa atttcggaaa agctattatt ctaataacag
     8821 atttaaattt aaatttaaat caatgcgaag aatttgaaaa aatttgcaaa gagaaaaata
     8881 ctaaaatttt tcttcttgat catcatcaaa gtggcgaaga atgtgctcaa aaatattctt
     8941 ggtatttact tgattctaaa agatgtgcaa ctaaaatcgt ttatgatttt ttctctaaaa
     9001 tctgtactcc tgttttagaa ctttcaaaat ttgttgatgt ggttaatgct gttgatattt
     9061 ggctaagcga ggatgaaaat tttgaacttg gaaaggtttt tttaggcttg attgccaatg
     9121 caaaagaaat aaatcgtgta atgtttaaag aatctcaaat tgattatatg tttttcttgc
     9181 ttgataaggc ttggaaattt ataggaaaag aaaatgcaaa tattttactc gataatgcta
     9241 ctcattttat aaaaaaggat tattttgcca gaaaaaatga tgatactctt tctaatttaa
     9301 tttcttattt tgtagttgaa aaactaagtg agctaaaaga aaatttcagc atagaatatg
     9361 aaggccataa aggcatctta acttcaaata taggcaatac ttctgttatt ggaaatgatt
     9421 ttttagtaaa aaatcctgat tatgactttt ttattgatgt tagttctaga aaaaccttaa
     9481 gttttcgtgc aaatggaaaa atagatgtaa gtttaatggc taaaaattta gtaggtggtg
     9541 gcggacataa aaatgctagt ggtggacttt ttgcgacatt taaagatgga gcaaattata
     9601 attatattaa ggctcaaatt attgatttaa ttaaaagcaa agaacttaaa aaggaaaaca
     9661 atgaatcaaa acaataataa aaccttaaaa aatgaattag aagatttaca atatgagctt
     9721 agcatagttt tagaagctat gcttttatac gctggagtta aaagagaaaa attagaaaat
     9781 gcaatagaag cttatattga taatatagat aatgtactcg aaaattccaa caaagaaggg
     9841 gttgatgaaa ttttagaagt ggtggaattt ctaaaaaata aatacaaaga tttttttcaa
     9901 tgaaaaagtg tattttaatt ttttttagtt tatattcttt aagttttgct aatatttatg
     9961 aaaaattaaa tgattttgct tatgaaaaaa aaccgaataa agattttaag attcaagaag
    10021 ttaaattagt gcaattttca caagagaata aagattgcct tgaactttt
//
LOCUS       DAPOLW010000053         9747 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.053, whole genome shotgun sequence.
ACCESSION   DAPOLW010000053 DAPOLW010000000
VERSION     DAPOLW010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9747)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9747)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9747
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.053"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..1444)
                     /locus_tag="ROE18_000939"
     CDS             complement(<1..1444)
                     /locus_tag="ROE18_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3971 domain-containing protein"
                     /protein_id="HDX3651125.1"
                     /translation="MKKKILYIVVFFVVLILALFIVLKNGIVISSIQFDFLKLEQLYI
                     KLDKKLIVRAKNITINETQNSEISSQTHSSDNASTEILKITKNLKYLYTFIKEIDIQN
                     LNIKDNHVRILFKDNEFFIDNDLLFLKLTLQRQNKELIADIKKLLLKDYDLSIDGNLS
                     INTKSEFYYFQGRASGELLDFNASISYKDKNLAYKIEDLNIRNITEIFKRVNKRIELP
                     QSLNLWVAYRAKGEFYHLDYLQGFIDFTKDNYYLDNISASGYVNNVKVRLDDKMNAIE
                     IPKLDLNLNKQKLDFVFNKAFYNGADLSSSKVYLYDLFDEKKVGIYLRIKSDNLKFDE
                     KLAKALEDYHFSLPFYQKSGKIKSDLELKIDFHDKGEISYSGILALENASISLADFNI
                     TKAFVKLNQNDLNIENASVKNGFLEADFNAKFDLQKQQGNFNTQISRLYFDNGELLDL
                     KNQNVEVKLDYSQNVNISIPQWNLILNFKDG"
     gene            1359..2360
                     /gene="mltG"
                     /locus_tag="ROE18_000940"
     CDS             1359..2360
                     /gene="mltG"
                     /locus_tag="ROE18_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HDX3651126.1"
                     /translation="MTIPFLSTINKANISTTKNTTIYKIFFFIRNFFLIFILGIFYYL
                     TQPLKSNSVVFIPQGSISQIITYLKQNKYQMSNIDKYILFFLGHPQSGWINIGTKDLN
                     RAEFLHKLTIAKAALQTITLIPGETSVIFLEQAAKQLGLDKDILLKEFQAQAPYDEGV
                     FLPETYKIPKGITENLLIQMLLNHAEISNKKTSEKIFGDYNPKKWHQYIIIASVIQKE
                     AANDNEMPIVASVIYNRLKKGMKLQMDGTLNYGIYSHVKVTPQRIRQDNSFYNTYKFT
                     GLPKEAVCNVSLAAIRAAIFPLKTDYLYFVRDKNTGVHIFSTNIDDHNKAINLQKGK"
     gene            2440..2871
                     /gene="flgB"
                     /locus_tag="ROE18_000941"
     CDS             2440..2871
                     /gene="flgB"
                     /locus_tag="ROE18_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HDX3651127.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDKKELELAVTEEGHQKPWKFPDPSKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            2881..3375
                     /gene="flgC"
                     /locus_tag="ROE18_000942"
     CDS             2881..3375
                     /gene="flgC"
                     /locus_tag="ROE18_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HDX3651128.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNERINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID
                     LLRG"
     gene            3382..3678
                     /gene="fliE"
                     /locus_tag="ROE18_000943"
     CDS             3382..3678
                     /gene="fliE"
                     /locus_tag="ROE18_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HDX3651129.1"
                     /translation="MNNINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEIDDLNKGQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            3685..5493
                     /locus_tag="ROE18_000944"
     CDS             3685..5493
                     /locus_tag="ROE18_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDX3651130.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDACLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNNQTSTNN"
     gene            complement(5490..7209)
                     /locus_tag="ROE18_000945"
                     /pseudo
     CDS             complement(5490..7209)
                     /locus_tag="ROE18_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006655140.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi symporter"
     gene            complement(7264..7698)
                     /locus_tag="ROE18_000946"
     CDS             complement(7264..7698)
                     /locus_tag="ROE18_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651131.1"
                     /translation="MLGIYLLITALSFLALYFAVKKLTLNIDERTLLEPIKMDIYPKF
                     CDLIDEKIREFKENIQNANLTLKNSNQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSFLKELENLLLEYLEKGEEEAENLREFLMDEFEKLKG"
     gene            complement(7698..8015)
                     /locus_tag="ROE18_000947"
     CDS             complement(7698..8015)
                     /locus_tag="ROE18_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDX3651132.1"
                     /translation="MIENISASLWTKQDLNAYQIFDVRTPLEWEEGILPNAQCVALYD
                     NQGLLNAKFLDEFQSKRDESKKLAFICRSGHRSMVAAEFIAEKLGLESINLDGGMLAL
                     KGC"
     gene            complement(8012..>9747)
                     /gene="htpG"
                     /locus_tag="ROE18_000948"
     CDS             complement(8012..>9747)
                     /gene="htpG"
                     /locus_tag="ROE18_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HDX3651133.1"
                     /translation="NASDALDKLNFLSVSDDKYKSLKFEPKIEIKIDKDKKTLSISDN
                     GIGMDKDDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIGQFGVGFYSAFMVASKIEV
                     LSKKALDDKAYLWSSDANGYEIDDANKEEQGTSITLYLKDDEFANAYKIESIIEKYSN
                     HIQFPIFMEKEEFTPAKEGEEEGKTELKISQINKANALWRMQKSSLKAEDYERFYEQN
                     FHDSNKPLLYLHTKSEGKLEYNSLFFIPQNAPFDLFRVDYQSGLKLYVKRVFISDDDK
                     ELLPTYLRFVRGIIDVEDLPLNVSREILQENQILKGIKEASVKKILGELEKLKNNDKE
                     KYLSFFKTFGKVLKEGLYGFGGEKDSLLKLMLYKSTKGENLRSLEEYKNDLQGEQKEI
                     FYIAGNNESLLRTSPLLEEYKQKNIEVLLMDDEIDSLVTPMLEFEGLKFVSINQVEDK
                     NELSDEEKNTFAPLVAKFKELLKDQVEDVRLTSRLKDSPSCIVYDKNKPDFAMQQLLK
                     QMGQEQNFKPILEINPKHAIFTGLKNNESFSADIATLVLNMAKLSEGMGVDNPAEFNA
                     SLTKIINKAFS"
BASE COUNT         3575 a         1539 c         1302 g         3331 t
ORIGIN      
        1 gtccatcttt aaaatttaaa atcaaattcc actgaggaat gctaatgtta acattttgcg
       61 aataatctaa ttttacttct acattttgat tttttaaatc taaaagctct ccattgtcaa
      121 aataaagcct tgaaatctga gtattgaaat ttccttgctg tttttgtaag tcaaatttag
      181 cattaaaatc agcttctaaa aagccatttt taacactggc attttctata tttaaatcat
      241 tttgatttaa ttttacaaat gcttttgtaa tattaaaatc agccaaagaa atactagcat
      301 tctctaaagc taaaatacca ctataagaaa tttcaccctt atcatgaaaa tcaattttaa
      361 gttccaaatc acttttaatt tttccgcttt tttgataaaa aggtagtgaa aaatgataat
      421 cctctaaagc tttagcaagt ttttcgtcaa attttagatt atcagactta atgcgcaaat
      481 aaatcccaac ttttttttca tcaaacaaat catatagata aaccttacta gaacttaaat
      541 cagcaccatt atagaaagct ttattaaaga caaaatcgag cttttgtttg tttaaattta
      601 aatcgagttt tggaatttca atagcattca ttttatcatc caagcgaact ttgacattat
      661 taacataacc tgatgcacta atattgtcta aataataatt atctttagta aaatctataa
      721 agccctgcaa ataatctaaa tgataaaatt ctcccttagc cctatatgct acccaaagat
      781 ttaaactctg cggaagttct attcttttat taactctttt aaaaatttcc gtaatatttc
      841 taatgtttaa atcttctatt ttataagcta aatttttatc tttgtaagag atgcttgcgt
      901 taaagtcaag caattctcca cttgctctac cttgaaaata ataaaactcg ctcttagtat
      961 tgatgcttaa atttccatca atacttaaat cataatcttt taataaaagt tttttaatat
     1021 cagctataag ttctttattt tgacgctgta atgttaattt taaaaacaat aaatcattat
     1081 ctataaaaaa ttcattatct ttaaataaaa tacgcacatg attatctttt atatttaaat
     1141 tttgtatatc aatctcttta ataaaagtat atagatattt taaatttttt gttattttta
     1201 aaatctctgt tgaagcattg tcagaagagt gggtttgtga tgaaatttcg gaattttgag
     1261 tctcatttat agtgatattt tttgctcgta caattaattt tttatctaat ttaatatata
     1321 attgttccaa ttttaaaaaa tcaaattgga tactagagat gacaattcca tttttaagca
     1381 ctataaacaa agctaatata agcacaacaa aaaatacaac aatatataaa attttctttt
     1441 tcatacgcaa cttctttttg atatttattt tggggatttt ttattatcta actcagcctt
     1501 taaaaagcaa ttctgtggta tttattcccc aaggttcaat ttctcaaatt ataacatatt
     1561 taaagcaaaa taaatatcag atgagtaata ttgataaata tattttattt tttttaggac
     1621 accctcaatc aggctggatc aacataggta caaaagattt aaatagagct gaatttctac
     1681 ataaactcac tattgctaaa gcagcacttc aaaccattac tcttatccca ggagaaacaa
     1741 gcgtaatctt tctagaacaa gcagccaaac aacttggact tgataaagat atacttttaa
     1801 aagaatttca agctcaagct ccttatgatg aaggagtttt tttaccagaa acttataaaa
     1861 tcccgaaagg cattacagaa aatctactca ttcaaatgct tttaaaccat gctgaaattt
     1921 ccaataaaaa aacttctgag aaaatttttg gtgattataa tccaaaaaaa tggcaccaat
     1981 atatcatcat cgcttctgta atacaaaaag aagctgctaa tgacaatgaa atgcctatag
     2041 ttgcaagcgt aatttacaat cgacttaaaa aaggtatgaa gcttcaaatg gatggaactt
     2101 taaattatgg aatttactcc catgtaaaag ttaccccaca aagaataaga caagataata
     2161 gcttttataa tacctataaa tttacaggat tgcctaaaga agcggtttgt aatgtttctt
     2221 tagctgctat tcgtgcagct atttttcctt taaagacaga ttatttatat tttgtgcgtg
     2281 ataaaaatac tggagttcat atttttagca caaatataga tgatcacaat aaagccataa
     2341 atttacaaaa aggaaaataa ttttgatatt tttatacaaa atagttaaat tggaacagta
     2401 tttgcttgtt aatattaaaa attataaaaa ggataaaaaa tgattaaccc atttaaatca
     2461 aaagaactag tcactggtgc tttagcgggt agaaatctaa gaaatcaact catcaatgcc
     2521 aatcttgcaa atgttgatac tcctttttat aaagcaagag atattgaatt tgaaacagct
     2581 ttggtaaatc gtgcaaatga aattttcaaa aaaaatgaca aaaaagaatt agaattggca
     2641 gtaaccgaag aagggcatca aaaaccttgg aaatttcctg atcctagtaa atctactatt
     2701 tacttaagag atggtcattt ggcaagaaat gatgcaaata ctgttgatct agatgtagaa
     2761 actacagaaa tgagtaaaaa tacagttatg ataacagctc ttgatggagt tttaagaaga
     2821 caaagcaata tctttagttc tatacttgat gcaagctcta aattaagtta aaggtaaatt
     2881 atggcatact taagtgattt tgatattagt ggttatggtt taagtgctca acgttttaga
     2941 atgaatgtta ttagctctaa tatagctaat gcaaacacta caagaacagc tgaaggtggg
     3001 ccttatagaa gacgcgaagt gatctttaaa gcaacagatt ttgataagct tttaaatgag
     3061 cgaattaaca aagataataa ttttttaaaa tatgaaaatc ctttaaatga tccaagttcg
     3121 ccagaagaag ctaaacctgc tattcaaagt gttgtagtgg ataaagtggt cagagatgac
     3181 aaagattttc gtatgaagta tgatccaagt catcctgatg caaatgctga aggttatgta
     3241 gcgtatccaa atgtaaaccc tgttattgaa atggcagatt tgattgaagc tacaagagct
     3301 tatcaagcca atgtaagtgc ttttacaagt gcaaaaacta tagctcaaag tgcgattgat
     3361 ttattaagag gataataaaa aatgaacaat attaatgatt taaggttaaa taataatatt
     3421 tcaaatacca acaaaagtca aaattccaca ggaattggtg atgaatttgc caagatgctt
     3481 aaaaatgaaa tcgatgattt aaataaagga caagaaagtg gagaagctgc aatgacagac
     3541 attgccacag gacaagtaaa agatttacat caagcagcta tagctatcac taaagctgaa
     3601 agcagcatga aatttatgct agaagtaaga aataaagcga tcagtgctta taaagaaatc
     3661 acaagaactc aaatttaaac cctaatgcaa gaatataaaa aaaatagggt ttcaaaagtt
     3721 gcctttgcct actgcatggc acttttgttt atgattattt ttatcagctc tacttttttt
     3781 cttacatcaa aacgtcatat acctaacact gaaaaagatc aatacgctct tgctctaaga
     3841 ggatcgatta taaccaaaga taattttact atcacaagtt ctaaacaaat ttatcgtgct
     3901 gaaattgatc ttagaagcat taacaaagat aaatttgatc tatttttaaa gctttttcaa
     3961 atttatagtg ggataagtaa cgatcaagta gcagatatta aaaaaagaat gcaaaatcaa
     4021 aaaaaacgct cttataattt tgttctttta caaaacttag actccaagca agcaagctac
     4081 cttaaagatc ttgctaaaaa actttatata caaggttttt tcaaagcttt tacaaataac
     4141 tcaggaagag ttgaaacaag aggattaaat atcatcgaac atgaagaaga tagaatttac
     4201 atgtcaaaag attcttttac tcctattatc ggttatacta aaatgatatt agatccagaa
     4261 agtggaattt taaaaaatat aggagttaaa ggtttagaaa aatactacga tgcatgtcta
     4321 agccctgttc aaaatgaaaa aattcaagga cttaaagata taggtggaaa tattatttta
     4381 aatctaaatt cactacaaca aaaaaagatc aatggttgtg atttatattt aaatctttct
     4441 ttaaaactgc aaaaaagtat agagaaagct atagatcaaa gaaatgagga tttaaaagcc
     4501 aatgaaatca tcgttggggt aatggaaagt aaaacaggaa gaattttagc tctagcaagc
     4561 tcaaggcgtt atgacccaca aaatcgcgga aaggatctat cagttcttaa tgcaagcgct
     4621 atagaatacg gctatgaagc aggttctgtt atcaaacctt ttatctttac aacagcctta
     4681 agacttggta aaataaaaat ggatgaagtg attaatactt atggcggttc ttacaagcta
     4741 ggacgtttca ccatcaaaga cgatcacaaa atggacaaaa tgactatgga ggaagttata
     4801 agatattctt caaatatagg catgatacaa attgctaaaa ggcttaacaa tatagaaatc
     4861 gtatcaggac ttaaaatatt taaatttggc gaaaaaagtg gtattgatct accctatgaa
     4921 caaaaaggag aaattccaaa tcctaagcgc ttaagagata tagaaaaatc tgttttaagt
     4981 tatggttatg gacttaaaac aacctttata caactccttg cagcttataa tgttttcaac
     5041 aatgatgggt tttatatcac accacgttta gctgaaaaat tctatcaaaa tggacgcttt
     5101 acaaatcttg atgatgatgt aaaaaaagaa aaaattcttt ctagcgaagc cgctaaaacg
     5161 atgcaaaatg ttcttataaa tgttatagaa aaaggaacag gaaaaaaggc aattacacaa
     5221 ggtattattg caggaggtaa aacaggaacg gcaagaatag ccgaaagaca aggttacacc
     5281 tcaaatcgct acaatgcatc cttttttggt tttgcaaatg atttaaatca cgcctatacc
     5341 ataggagttc tcgtaagaca tcctactaaa ccttatagtt attatgctgc acaaagtgct
     5401 ttgcctatgt ttaaagatgt tgttgatatt ttaatcaatg aagaatttct aacgcctata
     5461 caagacaata accaaactag cacaaacaac tagtttgata tatctttaga aaatatcacc
     5521 tcaacagcac ctataagttc ttcagcaatc ttagcagcaa aagttgtatc attaagtatt
     5581 gaaattcctt cagctgttgt gatttttctt actgaaataa gatgttcaac attgctcaag
     5641 gttaaagtat cgatttcttt taaaatttct tttccttttt gaagattttt aataatcaaa
     5701 taaagctttt cacgatcttc aacaactcta agctcttcga tacttcttaa aagctctcct
     5761 aaattcgatc taattttatt gtactctaaa gccaaaaatt cattagaaga actagaatat
     5821 ttcttaatat tcgcttggat aatttttaaa tttttagttg tttcggctaa atttttagct
     5881 gccatcttaa aggtaaaaat tttatgattc tttgtttcat cgttaatata aacttgtgct
     5941 ttagttgaaa aatcgataat agcttcaaaa agaaccttta tcctagtttg atacaaatag
     6001 tctaaatcca catttttact aaaccacttt ttattttcta aaatttcttt aaaactttta
     6061 tcactttgta tatctttacg actaaaacct atagcatgag caacaattac ataggtattg
     6121 ttataaagat gctcgctttc tttccttaaa gcttcgatgg ctgtgtcact aaacttaacc
     6181 aaactaccat caagatataa aggcttgtct ttattcttat ctttaggagc ttttactatc
     6241 ttatttaaaa aaaagaacaa tttgaggagt aaagaatgaa aaaagcgcaa cgccaattaa
     6301 attaaacaaa gtgtgaaata atgctacttt caaagctata tcttctatgt ttaatacaat
     6361 ggataaaaaa ttaagaaaat gtataaaata aggaaaaata agcactatta aaaaagctat
     6421 accaaaatta aaaatacaat ttgcaaacgc taatttcttt ccttcaatat tggtgcttaa
     6481 agaagctaaa acagccgtta caactcctcc aacactagtg cctaaagttg ctgctaagga
     6541 attttccaaa ctgatttgtc ctgcaagtaa agcagcaaca atcatagcca ttgtagctgt
     6601 gcttgattgt ataactcctg taagcaaagc acctaatcct aaaaaaacaa aaactccttt
     6661 aaacccagca aaatcaaaac gagaaagatc aattatatat ttaaaatttt caaaaccact
     6721 tttaatataa tccacaccca aaaagaaaaa acctatacca ataaaaatat tacctaaacc
     6781 ttttaaaaca ctatcttttt gaaagaaaaa taatactcca ataatcaaaa gtgggatagc
     6841 tagcattgaa attttaatat ttgtcaaacc aacaatcagc caagaacttg ccgtatttcc
     6901 taaatttgct ccaaaaataa tccctatgcc cgcacccaaa gaaataagcc ctgcactcaa
     6961 aaaagaaatc gtaacaatag aaactaaaat tgaaaattgc ataattaaag tacttaaagt
     7021 accaaaaagt atacttttta tctttgtatc agttgacttt actaaaattt tttcaagcaa
     7081 atcaccacta aaaactttaa aacctatacc taaattagtc attccaataa gaagtattgc
     7141 cactcctgct aaaagattag caagctcgtc ataacgaatt aaaataaaaa tcagaactaa
     7201 agtaaaaata cttcatgaaa taaatttaaa atattttaaa gaatttcctt cttcttgcaa
     7261 tgcctaacct tttagttttt caaattcatc catcagaaat tctcttaaat tttcagcttc
     7321 ttcttcgcct ttttctagat actcaagcaa taaattttct aattctttta aaaaagaaaa
     7381 aagttcattt tgccagatac tatcgttttt attgctcaaa ttcatggttt gtatgaaagt
     7441 caactctctg cttaaatccc caagtttttc taaaaattca tctttttgat tagaattttt
     7501 taatgttaaa ttagcatttt ggatattttc tttaaattct ctgatttttt catcgattaa
     7561 atcacaaaat tttggataaa tatccatttt aataggctct aaaagggttc gctcatctat
     7621 atttaaagta agctttttaa cagcaaaata aagagctaaa aaagacaaag ctgttatgag
     7681 taaataaatt cctagcatta acaaccctta agggctagca ttccgccatc taaattgatg
     7741 ctttcaagtc ccaatttttc agctataaat tcagctgcaa ccatgcttct atggccacta
     7801 cgacaaataa aagcaagttt tttactttca tctcttttgc tttgaaattc atctaaaaat
     7861 ttagcattta aaagcccttg attatcatat aaagccacac attgcgcatt aggtaaaata
     7921 ccttcttccc attctaaagg agtacgcaca tcaaaaattt gatatgcgtt taaatcttgc
     7981 tttgtccaaa gacttgcaga gatattttct atcatgaaaa agccttgttg atgatttttg
     8041 taaggcttgc attaaattca gcaggattat ccactcccat accttcgctt aattttgcca
     8101 tatttaaaac taaggttgct atatctgcac taaagctttc gttgttttta agacctgtaa
     8161 aaatagcgtg ttttggattg atttctaaaa taggtttgaa attttgttct tgacccattt
     8221 gttttaagag ttgttgcata gcaaaatcag gtttattttt atcataaact atacaacttg
     8281 gactatcttt caaacgactg gttagtctta catcttcaac ttgatctttt agaagttctt
     8341 taaatttagc tacaagtgga gcaaaagtat ttttttcttc gtcgcttagt tcatttttat
     8401 cttctacttg attaatggat acaaatttta aaccttcaaa ttctagcata ggagttacta
     8461 aagaatcaat ctcatcgtcc atgagtaaaa cttctatatt tttttgttta tactcttcaa
     8521 gtaaagggga ggttcttaat aaactttcat tatttcctgc tatataaaaa atttcctttt
     8581 gttcgccttg aaggtcattt ttatactcct ctaaagagcg taaattttca cctttagtgc
     8641 ttttataaag catgagtttt aaaagactat ctttttctcc gccaaaacca taaagtcctt
     8701 cttttaatac cttaccaaag gttttaaaga aagataagta tttttcttta tcattgtttt
     8761 tgagtttttc aagttcacct aaaatctttt taacgctagc ttctttgata ccttttaaaa
     8821 tttgattttc ttgtaaaatt tcacgactta cattaagtgg taaatcttct acatcgataa
     8881 tcccccgcac aaaacgcaaa taagttggta aaagttcttt atcgtcatcg ctgataaata
     8941 cgcgttttac ataaagtttt aagccacttt gataatccac acggaataaa tcaaaaggtg
     9001 cattttgtgg tatgaaaaat aaagaattgt attctaattt tccttcactt ttagtgtgaa
     9061 gataaagtaa aggtttgttt gaatcatgaa aattttgctc ataaaatctt tcataatctt
     9121 ctgctttaag gcttgatttt tgcattctcc ataaagcatt ggctttattg atttgagaaa
     9181 ttttaagttc agttttccct tcttcttcgc cttctttagc aggagtaaat tcttcttttt
     9241 ccatgaaaat tggaaattga atgtgattag agtatttttc tataatgctt tcgattttat
     9301 aagcattagc aaactcatca tcttttaaat ataaagtaat gcttgttcct tgttcttctt
     9361 tgtttgcgtc atcaatctca taaccatttg catcagaact ccaaagataa gctttatcat
     9421 ctaaagcttt tttacttaaa acttcgattt tactagccac cataaaagca gaataaaaac
     9481 ctactccaaa ttgtcctatg agttgagaat cttttttagc atcaccgctt aaattttcta
     9541 aaaagctttt agtaccgctt tttgctatgg ttccaaggtt gttgataaga tcatctttat
     9601 ccatacctat gccattatca ctaatactta aagttttttt atctttatca attttgattt
     9661 caattttagg ttcgaatttt aagcttttat atttatcatc acttacgctt aaaaaattaa
     9721 gcttatctaa agcatcgctt gcgtttg
//
LOCUS       DAPOLW010000054         9564 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.054, whole genome shotgun sequence.
ACCESSION   DAPOLW010000054 DAPOLW010000000
VERSION     DAPOLW010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9564)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9564)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9564
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.054"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            44..559
                     /gene="nrfH"
                     /locus_tag="ROE18_000949"
     CDS             44..559
                     /gene="nrfH"
                     /locus_tag="ROE18_000949"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HDX3651134.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYNEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
     gene            574..2406
                     /locus_tag="ROE18_000950"
     CDS             574..2406
                     /locus_tag="ROE18_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HDX3651135.1"
                     /translation="MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADAKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            2542..3096
                     /locus_tag="ROE18_000951"
     CDS             2542..3096
                     /locus_tag="ROE18_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651136.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEYLKTNGLKVPSNTNIIKSKDKGITIGGTHYSANITQN
                     STNEYNITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            3160..3249
                     /locus_tag="ROE18_000952"
     tRNA            3160..3249
                     /locus_tag="ROE18_000952"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3194..3196,aa:Ser,seq:gct)
     gene            complement(3322..4314)
                     /gene="ceuB"
                     /locus_tag="ROE18_000953"
     CDS             complement(3322..4314)
                     /gene="ceuB"
                     /locus_tag="ROE18_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
                     /protein_id="HDX3651137.1"
                     /translation="MKKSLVFAFFAFFLSLILTACNSNSNENNASSTTKTNTATVKVL
                     PISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVVGVPAKNLP
                     KYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNA
                     NFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKIS
                     AFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVVDRNVILGNK
                     ERAQGILDNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK"
     gene            complement(4327..5082)
                     /locus_tag="ROE18_000954"
     CDS             complement(4327..5082)
                     /locus_tag="ROE18_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDX3651138.1"
                     /translation="MIKLKNITKFYDNKVIISDLSLDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPSSGEIYIDGMNLKNYKEQILAQKISILKQQNNINLRLKVEELVAFGRFP
                     HSQGRLNTNDKIKINEALEYMELSNLRNEFLDTLSGGQKQRAFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKDGKLLKQD
                     SKDEIINQENLKQIYDMDIPVSQINGKKICIYF"
     gene            complement(5079..6017)
                     /locus_tag="ROE18_000955"
     CDS             complement(5079..6017)
                     /locus_tag="ROE18_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDX3651139.1"
                     /translation="MRKKMLILSFLTLNMIGIFIFVGLNGFDEYALKSRFLQIAAIII
                     VAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDVLILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVVNITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISVVINFLGGIYFIYLVLKGNKL"
     gene            complement(6010..6978)
                     /locus_tag="ROE18_000956"
     CDS             complement(6010..6978)
                     /locus_tag="ROE18_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDX3651140.1"
                     /translation="MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQL
                     EIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FTGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
                     YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNL
                     GISYNGILFLGLMIVSIITSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALC
                     GALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKVYA"
     gene            complement(7064..8053)
                     /locus_tag="ROE18_000957"
     CDS             complement(7064..8053)
                     /locus_tag="ROE18_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HDX3651141.1"
                     /translation="MRKIALFLSLCVFIWASDLQQALEYEKQGDYKKAMEIYKKLALK
                     NSSVLISQEQNNSSQATQTQNSITIKKEEKQDFSRLALANYLGENESFNPLGISSYKM
                     NYFLPFAYSFNSLGVNNNKSEAKFQLSVKKRLFENLLGLDEKYYIAYTQTSWWQIYEH
                     SSPFRETNYQPEFFIDLPLYLKDYEFFNNLRVGILHESNGKGDENLQSRSWNRIYVST
                     AILYNKFLFVPRLWYRIPENKKDDDNPAILHYMGNFDVNLAYLGDDYFINLMLRNNLK
                     FHNNKGAIQVDLGYDIFNNGIYWYLQYFNGYGESLIDYNKHLQRLSTGFLISY"
     gene            complement(8050..8625)
                     /locus_tag="ROE18_000958"
     CDS             complement(8050..8625)
                     /locus_tag="ROE18_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDX3651142.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVDKFSKI
                     FKNVYVSAKEDKFENHFSLIKDSLEFEVYSPMLALYSILSNFKNEFVFVLSVDSPKVG
                     ENELLKMLPFLEQNYKIIIAKTPLHKHPLCGFYHSSLAQTCKNFLEKNEQKIGLLFSE
                     IKTKFVEFEDEDAFLNLNFYEEYEKFKSKLK"
     gene            8687..>9564
                     /locus_tag="ROE18_000959"
     CDS             8687..>9564
                     /locus_tag="ROE18_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HDX3651143.1"
                     /translation="MKYTELLQLQTFFSRFKKIDFIKRINDNILELSFDRERFIFDLT
                     RAMSAIYTAKFNAKNYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSY
                     ESKIYFEFTGKNTNVILTDEKDLIIEALRHIDKSYRVVKPNVILESLKPYKMDENFEE
                     IKDFADYFSRKFTSIYESKIKQIKNLKLAQVDKKIQNLQELFSSLDEENSLLLKALEY
                     RKRADVLFANLSVLKDYEREFKLDDFEGKELEFKLEFNPKQSANLYYKNAKKLEQKAK
                     NLNIQRQNLKEKLDFT"
BASE COUNT         3457 a         1361 c         1494 g         3252 t
ORIGIN      
        1 gggaaattct gtgacattgt tgtttcattg aagattttaa gaaatgataa ttttaaggag
       61 gaaaattttg aagaaaactt cgaatctttt tactattttt cttgttttgc tttttgtttt
      121 ctttgcggtt gggttttata ctttttataa cgctaagggc acatcttatt taagcaatgc
      181 aagtgaatct tgtaataact gccatattat gaatgaagtt tataacgaat acatggcagg
      241 accacactct caaaaagtca aaggcgaacc aagagcaact tgtgtggatt gtcatttgcc
      301 acataatttt gtagctaagt ggatagctaa agcgcaaagt ggtttaggac atgcttatgc
      361 ttttactttt aaacttgatg agttgcctac aaatttgagt gcgactgaaa aaagcagaaa
      421 aatggtgcaa gaaaactgca tacgctgtca tgcagatttt gctcaaacag ctatcaatgc
      481 tacaacaaat ccacatgcag acaagtcatt aaattgtgct tcttgtcata aagatgttgg
      541 acataaacac ggaatttaat aaggagaaga tgaatgaaaa aaaatatttt acgcttaggt
      601 attgtcgttt tggttttact tatagcggga gttttatggc taaataatga tatcaatcaa
      661 aaaaaagaag atgaagcaaa taaaaatgcc attgcagcaa atgctgattt ttctttgctt
      721 agcgatgatg atccaaattt tgaaaaatgg ggtaaggttt ttccagagca actaaaaatg
      781 tatttaacgg ttgaaaaaga agagcctaag gctactgaat ttggtggtaa tttagcttat
      841 tcaaaattaa ttcgctttcc tcaattaacc atactttggg caggatatcc ttttagtctt
      901 gatttcaatg aagaaagagg gcatttttgg gttcaagtag atcaaatgaa aacagcaaga
      961 aacaacaaag attttcttaa tgcccatgga cttgctgctt ttaaaggtca acctgcagct
     1021 tgtatgaatt gtcatagtgg atggactcca tggcttataa aaaatgttgc taaaggagat
     1081 tttactgctt ttaactctac aaattattgg actatgatta aaaatatccc agctgttgat
     1141 ggtatagtag aaaattcacc tgaacatgca ggcccacatg gtggtaaaag aatgggtgta
     1201 acttgtgcag attgtcacaa tccaaatgat atgagtttaa gacttactcg tccagcagct
     1261 attaatgctt tagtttctag aggatatgaa aaagatccag tacaaggcgt aaaagctaca
     1321 agagaagaaa tgagaacttt agtttgctct caatgtcatg ttgaatacta ttttaaacca
     1381 acaggggaaa aagtaaaagt aatgggtgaa actattgtag atgatagttc taaaaaatgg
     1441 tggaatggaa ctcagaaaaa ttatgatgag tatgagtttt ggagagatgg caataaagct
     1501 aaagagattg aaaccgatgg tatagtttta acttttcctt ggagtgagtg gaaaaaagga
     1561 caaccattta gaattgaaat gctagatgat tattatgata aagttcgtgg agtatttgga
     1621 gctgatttta ctcataaatt aacaggagcg caaattatta aaattcaaca tccagaaagt
     1681 gaactttata gtggcggtgt gcatgctgca aatggagtaa gttgcgtgga ttgtcatatg
     1741 ccttatgtta gagaaggagc taaaaaggtt actcaacaca atatcacttc tcctttaaga
     1801 gatattaact ctgcttgtaa gtcttgtcat aaacaaagtg aagattattt aaaagctcaa
     1861 gtgcttgaca tacaaaacag cgttgcacat gatcaaagaa ctgcagagta tgcaattgtt
     1921 agtttgatta tggatactaa aaaattacgc gatgaactag gcaatatgga aaaattccaa
     1981 agcgatggaa aagctgatgc gaaaaaaatt agcgaagagc taaaagaagt tttagaactt
     2041 catcgtaaag ctcaaatgag agcggatttt gttaatgctg aaaactcaac tggtttccat
     2101 aatcctcgcg aagcttcaag aatgttattg caagctgttg atatggcaag aatgggacaa
     2161 actaaacttg tagaaattgc agcggcaaat ggaattaaag attttaaaac ttcaaattta
     2221 ggttttgaag atattcaaaa atttaatcca ggagagcttt attataaagt agatgttaat
     2281 aatcataaag ctggagagcg ttactatgca gatgaaaaag atgttaatgg caatcctcca
     2341 aaagaacttt tagagcatga taaagagctt gctccttata attatcaagt gattgataaa
     2401 aaataattct taagccctat aatcataggg ctttttcttt tctttgtttt aaaaaatata
     2461 aactttttat ttaaaattca cttttgcttc actttgtttt gtcaaaatat cacaaatttt
     2521 gataatcaaa aaggagttaa aatgatcaat aaaaataaat tgtttagaca ggttcatatc
     2581 tatcttagtt tgttcttttt gccttgtgct ttgctttttg ctttaacggg tatagcgtat
     2641 atttttggta ttaatcaaga tgtgggctta aaagttgagc agtatcaatt gtcaaaagtt
     2701 atagaaagtg gtaaagaaag agaagcttta atagagtatt taaaaacaaa tggtttaaaa
     2761 gtaccatcta atacaaatat aattaaaagt aaagataaag gtataacaat aggtggaact
     2821 cattatagtg ctaatataac tcaaaattct actaatgaat acaatattac cttaaaaaca
     2881 agatctttac ttggagatat gattatgctt cataaagata agggtgcttg gtatttttct
     2941 gtgcttagcg taggttttgg tattacttta tttatgcttt atatttcagg gcttatgatt
     3001 actttgtttg caaataaaaa agatagaagt aaacaatttg cagttcttgg agtaggggtt
     3061 gttgtaactt tgcttttggc ttatcttagc ctttgatttt tcctagcttt ttaagctagg
     3121 tattatttat ttttttgtat aatcatactt tactttattg gacagatggg tgagtggctg
     3181 aaaccacacc cctgctaagg gtgcagatct taacgggtct cgagggttca aatccctctc
     3241 tgtccgccac taaaactttc ttgaaaatcc caagtatttt attaagtatc gaagcaagag
     3301 actagccctt gcgaagttat attattttac agcgtttttg atttctaaaa tcatagtttt
     3361 taaagactct agtccatttc cacttgctaa ataccagtat tctggatcaa gatagatgat
     3421 ttttttgttt tgcgctgctt tggttttagc gacaagtgca ttatcgagta tgccttgagc
     3481 acgttctttg ttgcctaaga tgacatttct atcaacaaca aaaatataat caggattttt
     3541 ttctaatata aattcagaat tgatactttt tccgtgtgtg cctactttta tattctcatc
     3601 taccgcgtta atccctaaaa catcgtgaat aatcccaaag cgagattgag gaccaaaggc
     3661 tgaaattttg ttagaatttg taagaatgat aagagctttt ttatcttcat caactatact
     3721 tttggctttt tcaatttcat ttttaatatc tgaaattttt tctaaagctt ctttttctaa
     3781 accataaagt tttgcaacgc ttaagacatt gttttcaaaa gagcttaaaa aatttgcatt
     3841 atcaagacct acaaataaag ttggagctat ttcttttaat ttgtcataaa atttactttg
     3901 gcgtccagaa atgatgataa gatcaggttt taaagcatta atggcttcaa aatcaacttg
     3961 ttgtactcca cctacactag gtttgttttt aaattgttgt aggtattttg gtaaattttt
     4021 agcaggaacg ccaacgactt tatcatttaa ttttaaagca tcaaaagtat ctaaaattcc
     4081 aagatctaag atcactacct tagaaggatt tttagggatt ttattttctc ctagactatc
     4141 cttcactaaa aaactatcac cctcatcgct catactaata ggcaaaactt tcaccgtagc
     4201 agtgttggtt tttgttgtag aacttgcgtt gttttcattt gagtttgaat tacaagctgt
     4261 taagattaga cttaaaaaaa atgcaaaaaa tgcaaaaact aaagattttt tcatattttc
     4321 tcctttttaa aaataaatac aaattttctt accattaatt tgacttacgg gtatatccat
     4381 atcataaatt tgttttaaat tttcttgatt gatgatttca tcttttgagt cttgttttaa
     4441 aagcttccca tcttttaagg ctatgatttc atcagaataa atcgaagcaa aattaatatc
     4501 atgtaataca acagctatac ttttgttaaa gtctttgact aaatttttca ttagttgcat
     4561 gatttgtacg ctatgcttca tatcaagatt gttcaaaggt tcatcaaaca ttataaattc
     4621 agtatcctga gcgatgatca tggctataaa agctctttgc ttttgtcccc cgcttaatgt
     4681 atctaaaaat tcatttctta agttgctaag ttccatgtat tctaaagctt cattgatttt
     4741 gattttatcg tttgtattaa gtcttccttg agaatgcgga aaacgcccaa aagcgactaa
     4801 ttcttcaact tttaatctta aattgatatt gttttgttgt ttgagaatgg aaattttttg
     4861 tgctaagatt tgctctttat aattttttaa attcattcca tcgatataaa tttctccact
     4921 actaggtttt atcaaacgac ttgctagagc taaaagagtg gattttccag cgccattggc
     4981 tcctattata gaagtgattt tgcctttatg aaaatcaagg ctaagatctg aaataatgac
     5041 tttattatca taaaatttgg tgatattttt tagtttaatc ataatttatt accctttaat
     5101 acaagataga taaaatatat cccacctaag aaattaataa ccacgcttat agtggcatta
     5161 taatcaaaaa ctctagagac aaaaaacacc cctccaagca aagccaaaat actaataagt
     5221 atacaagcgc ttagcaaaat actatgcttt gcagttttaa atagctcata agtgatattt
     5281 actactaaaa gtcctaaaaa ggttatagga cctacaagtg cggtgctaat agaagttaaa
     5341 atagctatga taatcatcaa ttgttttgaa attttttgat aatttatccc taaatttatc
     5401 gctaaatctt tgcctaaatt taaaggatct aaaaatttca tatagcgaaa aatccatata
     5461 aaacttaaaa agctaataat ataagcaaga attaaaacat caaaagcaat attatcaaaa
     5521 ctagcaaaca ttcttccttg tattaccatg aattcatcag ggtcgattag tacttcaaaa
     5581 aaagagctta aagtgctaaa aagtgttcca aaaactaaac ctaaaagcat gataagataa
     5641 atacttctat cactactaaa taaaatctta taaagtccta gtgaaaaaac caccatacaa
     5701 actagagtga ttaaaaaatt gatatcgttt ttataaacac ttaaattagc cgcaccaaaa
     5761 gaaaagataa gagcactttg aagcaacata tataaagaat ctaatcctat gatagcaggg
     5821 gttagaattt tgttattgca taaagtttga aaaatcactg ttgaaacagc gatacaaata
     5881 gctactataa taatagccgc aatttgtaaa aaacgacttt ttaaggcata ctcatcaaag
     5941 ccatttaaac ccacaaatat aaaaatccct atcatgttaa gtgttaaaaa gcttaaaatt
     6001 agcatttttt tacgcataaa ctttcctttt tagtaaaaga aagataaaga ttaaagaccc
     6061 taaaacacct gtagtgatac ttaaaggcat ttcaaaagga aagataacaa gtcttgaaat
     6121 gatatcgcaa acaagtaaaa acaaagctcc acaaagtgct atatagataa gattttttct
     6181 aagattatca cctagataaa gagctactaa atttgggata attagcccta aaaaagggat
     6241 aatcccaacg cttacaatca ctaagctagt gataatgctt acaatcatta agcctaaaaa
     6301 taatatacca ttataagaaa ttccaagatt taaagctata tcttcaccca tgccaactat
     6361 ggtgatttta tgagctaaaa aataagcaag tataaaaagt ggtaaagaaa tgtagagcaa
     6421 ttcataattt ccctgcataa catttgccat actgccttgt agccaacctt ggatattttg
     6481 tatataattt aaagcatagg caaaaaaagt ggttatagca ctaataatac ctccaaacat
     6541 caagcctatc aaaggtacaa aaatcacatc tttgagtttg atttttctta aaatttggat
     6601 aaatataaaa gaacccaaaa gtgcaaatat agaagcaatg atagcttgag tgaaaaaaga
     6661 cgctccagta aaaaatatta aagaaataag tatgccaaat ttagcacaat ccatggtccc
     6721 tgctgtagtt ggggaaacga atttattttg cgtgagttgt tgcatgataa gcccacatat
     6781 actaagactc attcctgtga gtaaaatcgc tataagtcta ggaattcttg tgagagttat
     6841 gatttctagt tgagtggagt taagattaag aatatctttt acattgatac tgataactcc
     6901 tataaataaa cttatcattc caaagaataa aagtaaagct ataagcactt ttaaactcaa
     6961 tatatgctta aaaaacaaat ctttccttat agtaataata attatcaaaa attaaattgt
     7021 aatgaaattt gttttaagaa atgataaaac tacaaaggat attttagtaa gaaatcaaaa
     7081 atccagtgga aagtctttgc aagtgtttgt tatagtctat aaggctttct ccatagccat
     7141 taaagtattg taaataccaa taaattccgt tattaaaaat atcatatcct agatcaactt
     7201 gtatagcgcc tttgttattg tggaatttaa gattatttct tagcataaga ttgataaaat
     7261 aatcatcacc taaatacgct aaattcacat caaaatttcc catataatgc aagatggcag
     7321 gattatcatc atcttttttg ttttcaggaa ttctatacca aaggcgtgga acaaataaaa
     7381 atttattata taaaatagca gtagatacat aaattctatt ccatgagcga gattgtaaat
     7441 tctcatctcc cttgccattg ctttcatgca atatacctac gcgtagattg ttaaaaaatt
     7501 cataatcttt aagatataaa ggaagatcta taaaaaattc tggttgatag ttggtttctc
     7561 taaaaggaga agaatgctca taaatttgcc accaagaagt ttgagtatag gctatataat
     7621 atttttcatc tagtcctagt aaattttcaa aaagtctttt tttaacacta agttggaatt
     7681 tcgcctcact cttattatta tttactccta aagaattaaa actataagca aaaggtaaaa
     7741 aataattcat cttataagag ctaatgccaa ggggattaaa gctttcattt tcaccaagat
     7801 aattagccaa agctaagcga gaaaagtctt gtttttcttc tttttttata gtgatagaat
     7861 tttgcgtttg tgttgcttga cttgagttat tttgttcttg agaaatcaaa acagatgaat
     7921 tttttaaagc gagttttttg taaatttcca tagctttttt ataatcgcct tgtttttcat
     7981 actctaaagc ttgttgtaaa tcactagccc atataaaaac gcataagctt aaaaataaag
     8041 caatttttct cattttaact tgcttttaaa tttttcatat tcttcataaa aattaagatt
     8101 taaaaaagca tcttcatctt caaattctac aaatttggtt ttaatctcag aaaataaaag
     8161 tcctattttt tgttcatttt tttctaagaa atttttacaa gtttgagcta aagagctgtg
     8221 ataaaagcca cataagggat gtttatgcaa aggggttttt gctatgatta ttttatagtt
     8281 ttgttccaaa aaaggaagca tttttaaaag ttcattttca cctactttag gactatctac
     8341 acttaaaaca aaaacaaatt catttttaaa atttgaaagt atagagtaaa gcgcaagcat
     8401 aggagagtaa acttcaaatt ctaaagaatc ttttatcaag ctaaaatggt tttcaaattt
     8461 gtcttctttc gcactcacat agacattttt aaaaatttta gaaaatttat ctacttgaaa
     8521 ttgagttaaa ttttgatttt taagaatcaa tttgctttta tcttgtccca tacggctaga
     8581 tttaccacca cataaaatca cgcaatttag ctcattaagc tgcacaaatt tcctttttaa
     8641 tgtaattcta ccacaaaatt cgccaaaata ttttataatt tcttttatga aatacacaga
     8701 acttttacaa ttacaaactt ttttttctcg gtttaaaaaa attgatttta tcaagcgtat
     8761 caatgacaat attttggaat taagctttga tagagaaaga tttatttttg atcttactcg
     8821 tgcaatgagt gcgatttata cagctaaatt taatgcaaaa aattataatg caccttttga
     8881 ttttatgctt aaaaagtatt ttagcaatgc ttttataaag gaagttaaag tccttgaagg
     8941 caatcgtatt ttatgtttta gtgtaaaagc taataaggct tataaaagct atgagagcaa
     9001 aatttatttt gaatttacgg gtaaaaatac caatgttatt cttacagatg aaaaagattt
     9061 gatcatagag gctttaagac acattgataa aagttatcgt gttgtaaaac ctaatgtgat
     9121 tttagagtct ttaaagcctt ataaaatgga tgaaaatttt gaggaaatta aagactttgc
     9181 agattatttt tctcgcaaat ttacaagcat ttatgagagt aaaatcaaac aaataaaaaa
     9241 tttaaaactt gcacaagtgg ataaaaaaat acaaaattta caagaacttt tttctagttt
     9301 agatgaagaa aattctttac tcttaaaagc tttagaatac agaaaaaggg ctgatgtatt
     9361 gtttgcaaat ttgagtgttt taaaagatta tgaaagggaa tttaagcttg atgattttga
     9421 aggcaaagag cttgaattta agcttgaatt taatcctaag caaagcgcta atttatatta
     9481 taaaaatgct aaaaaattag aacaaaaagc taaaaattta aacatacaaa gacaaaattt
     9541 aaaagaaaag ttagatttta cctt
//
LOCUS       DAPOLW010000055         9518 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.055, whole genome shotgun sequence.
ACCESSION   DAPOLW010000055 DAPOLW010000000
VERSION     DAPOLW010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9518
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.055"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            165..920
                     /locus_tag="ROE18_000960"
     CDS             165..920
                     /locus_tag="ROE18_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HDX3651144.1"
                     /translation="MKKILSIALVALVGLFLGACSDSKNKESNASVELKVGTAPNYKP
                     FNYKENSKLTGFDTDLVEEIAKKNGIKIVWVETNFDGLIPALKAGKIDMIASAMSATD
                     ERRQSVDFTKPYYMSKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQ
                     VQSNKDLNIAVLALKNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFSFAFDK
                     NKQKNIIEIFNKGIDEAKTDGFYDTLIKKYELE"
     gene            complement(944..1582)
                     /locus_tag="ROE18_000961"
     CDS             complement(944..1582)
                     /locus_tag="ROE18_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HDX3651145.1"
                     /translation="MKLVLFDLDDTLIQGDSAKLWLKFCVEKGFLPQEYLEKIVFYQK
                     QYQEKKFDMDEFMTFFLQSVKGKNEDRISSLVDEFIKIYIKPYEKAKELIIKYQDQRC
                     IIISATAEFLVRKIASFLGVRESIAIKCERVGDKFSGKAYGIYSFKEGKVLRLKEYLG
                     KDYEKWMKDSYFFSDSINDLPLLESVSKAFVCNGDEKILKIAKERKYEILTF"
     gene            complement(1579..2568)
                     /locus_tag="ROE18_000962"
     CDS             complement(1579..2568)
                     /locus_tag="ROE18_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDX3651146.1"
                     /translation="MAYLKIKNFKKAYGDKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVIKPDLLLLDEP
                     LSALDAKIRKYLRVQIKEIQKELELTTIFVTHDQEEALELSDTIILMNEGKIIQNSNA
                     NNLYLLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEAGDKIALKFNLSLAKELK"
     gene            complement(2572..3351)
                     /locus_tag="ROE18_000963"
     CDS             complement(2572..3351)
                     /locus_tag="ROE18_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDX3651147.1"
                     /translation="MNENLSLKAKIYHYAVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVFPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNIGGTAWILIFTYFTIALPFIYRALDNAISNV
                     NLNELIASNAMLGGSLMGAIFKLILPNLRNGILVAVFLSFSFLIGEFLYANILVGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            complement(3352..4191)
                     /locus_tag="ROE18_000964"
     CDS             complement(3352..4191)
                     /locus_tag="ROE18_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDX3651148.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFEPKFYLQSIINSLQISFISSIFGLLIGLLASYSLFILAPSKICKFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSLENSHLNACKMLGGGNFLYWLKIALPLLAPALFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLVVTFIANFLSKKYNF
                     KVL"
     gene            complement(4188..4997)
                     /locus_tag="ROE18_000965"
     CDS             complement(4188..4997)
                     /locus_tag="ROE18_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HDX3651149.1"
                     /translation="MMSKAILVVLDGLNCKSASINMGYLNALCKENLGKFYSLECELP
                     SMSRPLYECLLTGVKPVLSGIINNKLSFSKQTSIFDLCKEQGLKAGGAAYHWVFELYN
                     KKEFIPSLHRHIEDENLTLPYGHFYYEDDYLDSHLFADGEHLRNKYNLDFTLIHSMNI
                     DDVGHKFGSHSIEYANKTKKVDNLISEYLPTWLEQGINVIITSDHGMTEGKSHGGLSE
                     DEILVPFFTFGSAFSYENAKIKQDEICGSVCEILGLKHDKRYNDEILKARK"
     gene            complement(4994..6316)
                     /locus_tag="ROE18_000966"
     CDS             complement(4994..6316)
                     /locus_tag="ROE18_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HDX3651150.1"
                     /translation="MKKVILTSAMLCSVLFGVQEYEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANIAREEKIGTFKSKGNRETDFYLPFKNQPIQGHSGIKYIPKKDVFWVI
                     SDNGLGKKYNSYDAMLYAHEFKFDFKNSKYELLKTVFFKDSDKYPYPITTETTKERYL
                     SGVDFDTESIQVINDEFYIGDEFGPYLLHFDKNGNLKEVFDVYVEGKKLISPDNPSLK
                     FSDKPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGKEYLRII
                     EFNVKNKKFTGKTYKYFLEDKSHSIGDFNMIDDKYGIIIERDQKEGTKDKACKEGEDT
                     KHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFET
                     IEGVDIVDDSHIVVENDNNFPYSSSREPNKTDDNEFILLEVKDFLKSK"
     gene            complement(6327..7373)
                     /locus_tag="ROE18_000967"
     CDS             complement(6327..7373)
                     /locus_tag="ROE18_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDX3651151.1"
                     /translation="MSKKFFLSLGLVALLFSNSQAIDENLIKAAQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYDIEHSDTDMSSAQEIAKFKTEKKNASGDIGDVGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITVGDVSVAAQAVSAVLAANYALGGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            7490..8473
                     /gene="corA"
                     /locus_tag="ROE18_000968"
     CDS             7490..8473
                     /gene="corA"
                     /locus_tag="ROE18_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HDX3651152.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSAAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKSDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILVSQINIEQNKVIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            8494..9036
                     /gene="mog"
                     /locus_tag="ROE18_000969"
     CDS             8494..9036
                     /gene="mog"
                     /locus_tag="ROE18_000969"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HDX3651153.1"
                     /translation="MDTINIGILTLSDRASSGIYEDKATAEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAVCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIKECLEPVFPAIPYCIDLIEGA
                     YIEANDEVIKVFRPKKKCQN"
     gene            complement(9033..9218)
                     /locus_tag="ROE18_000970"
     CDS             complement(9033..9218)
                     /locus_tag="ROE18_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HDX3651154.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLIRANKF"
     gene            9345..>9518
                     /locus_tag="ROE18_000971"
     CDS             9345..>9518
                     /locus_tag="ROE18_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family peptidase"
                     /protein_id="HDX3651155.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFS"
BASE COUNT         3467 a         1579 c         1258 g         3214 t
ORIGIN      
        1 aaataaaatt ttattttaaa tattaaaaga atacttttat aattatttaa atattatcta
       61 aaagcacaac attaatataa cttttctaaa aattgatcca gacttaatta aatataaatt
      121 taaaataagt ataattttaa aacattttat atcaaaggaa aaaaatgaaa aaaatattaa
      181 gcattgctct agttgcttta gttggtttat ttttaggtgc ttgtagtgat tctaaaaata
      241 aagaatcaaa tgcaagtgta gaattaaagg ttggaactgc tccaaattat aaacctttta
      301 attataaaga aaactcaaaa cttacaggtt ttgatactga tttggttgaa gagattgcca
      361 aaaaaaatgg tattaaaatt gtttgggttg aaaccaattt cgatggattg attcctgctt
      421 taaaagctgg caaaatcgat atgattgcct cagctatgag cgcaactgac gaaagaagac
      481 aaagtgttga ttttaccaaa ccttactata tgagtaaaaa tctttatctt aagctaaaaa
      541 acaacgactc tcttcaaacg aaaaatgatt tagaaggtaa aaaaatagga gttcaactag
      601 gaactttaca agaaaatact gcaaaagcta tcaaaaatgc acaagtacaa agcaataaag
      661 atttaaacat agctgtttta gcactaaaaa acaacaaaat cgatgctatt gtagctgatc
      721 aagatactgc taaaggtttt ttagctgaaa atccagaatt ggtaagcttc taccaagaaa
      781 cagatggagg ggaaggcttt agttttgctt ttgataaaaa taaacaaaaa aatattattg
      841 aaatatttaa caaaggcata gatgaagcaa aaactgatgg attttatgat actttaatta
      901 aaaaatatga attagaataa gcgtgaattt tcacgcttat agcttaaaaa gttaaaattt
      961 catattttct ctcttttgca atttttaaaa ttttttcatc accattacat acaaaggctt
     1021 tgctaacaga ctctagtaaa ggtaaatcat tgatagaatc actaaaaaaa taagaatctt
     1081 tcatccattt ttcataatct ttacccaaat attccttaag tcttaaaacc ttgccttcct
     1141 taaagctata aatcccataa gcttttccac taaatttatc acccacacgc tcgcatttta
     1201 tggctatgct ttctctcact cccaaaaaag aggcgatttt tctaactaaa aattcagccg
     1261 tagctgaaat tataatacac ctttgatctt gatatttgat tataagttct ttagcttttt
     1321 cataaggttt tatataaatt tttataaatt catctaccaa agatgaaatt ctatcttcat
     1381 ttttaccctt aacactttga agaaaaaaag tcataaattc atccatatca aacttttttt
     1441 cttgatattg tttttgataa aaaacgattt tttctaaata ttcttgaggt aaaaaacctt
     1501 tttcaacaca aaatttaagc caaagtttag cactatcgcc ttgtattaaa gtatcatcta
     1561 aatcaaataa aacaagcttc attttaactc ttttgctaaa gaaagattga attttaaagc
     1621 gattttatca cctgcttcat aagtactatg agtgctaaaa tttaaagtat ctaccttaaa
     1681 ttcaatttct tgcactctaa ccctatagcg tatgatattg cctagcaatg atttttcttt
     1741 gattttagcc tctaagcctt cgttagaaat ttctatggtt tcaggacgca aggctatatc
     1801 ttttttaaaa tcgtgtttta aacccaagct atcaagctct ttagggctta aaatattgta
     1861 atttcctata aagctagcca caaaatgaga ttctggcaaa agataaagat tatttgcgtt
     1921 ggaattttgt atgattttac cctcattcat taaaataatc gtatcggata actctaaagc
     1981 ttcttcttga tcgtgcgtta caaaaatagt ggtgagttca agttcttttt gaatttcttt
     2041 aatttgcacc cttaaatact tacgaatttt agcatcaagt gccgataaag gctcatcaag
     2101 taaaagtaaa tcaggtttaa tcaccaaaga tcttgctaaa gccactcttt gcatttgtcc
     2161 gcctgaaagc ttatgtggat aagttttagc gtattcttca agctcgacga gttttaacat
     2221 ttttttcact cttttttcta tgtccttttt atccattttt ttgatcttta aaccaaaagc
     2281 tacattttca aaaacgttaa gatttggaaa aagagcgtaa ttttgaaaaa ccatacctat
     2341 atttcttttt tgaggactta atttggtaag atctttatca tttaaagaaa tttttcctcc
     2401 attaatttgg ctaagccctg ctatacacct taaaagagtg gattttccac agccacttgg
     2461 acctaaaagg gttataaact cacccttttt agcactaaaa ttaatatctt cgaaaataat
     2521 tttatcccca taagcttttt taaaattttt aatctttaaa taagccattt ttcactcctt
     2581 aatcaaacta gctataaaag ttgttataaa aattaataca aaataaacta ttaccaaagc
     2641 actagaataa tgcccacttt gatttttgat gttataaaga taaacttgta aagtctcata
     2701 agcacttcct acaagaatat ttgcgtataa aaattcacct attaaaaaag aaaaacttaa
     2761 aaaaactgcc accaaaattc catttcttaa gttaggcaag ataagtttaa aaatcgctcc
     2821 cattaaagaa cctccaagca tagcattaga tgcgatgagt tcatttaaat tgacattaga
     2881 tatagcatta tctaaagccc tatatataaa aggcaaagct atagtaaaat aagtaaaaat
     2941 gagtatccaa gctgtgcctc ctatattgtc agcataaagt tgcaaaagcc ctacacagct
     3001 aactatagga ggtacagcaa aaggcatgat aataagtata tttacaaagg cttttaattt
     3061 taaaaaataa taatttagca caaaaaccaa agggaaaaca agaatcacag aaagtaaaat
     3121 actgcccaca caaacaagca aagaatgcca aagagcaagt aaaaatcttt cgtcatgaaa
     3181 aagttcttga taccatttaa gcgtaagatc atcaggcaaa acacttacac cccaagaagt
     3241 ggaaatagaa tataaaaaag tagccattaa aggcaaagct aaaaataaaa aaaccaaaaa
     3301 caaaactgca taatgataaa ttttagcttt taaactcaaa ttttcattca tttaaagcac
     3361 cttaaaatta tattttttag aaaggaaatt ggctataaag gtaacaacaa gcatgataat
     3421 agttataatg atgcttaaag cactagccat ataaggatca agattgatat cgcctgcgat
     3481 taaagcagcg attcttacag gagcgacatt aaaatttccc gaacttaaag cataaatagt
     3541 cgcataagct ccaaaagcat tggcaaataa aatcacaaaa acaccaaaca aagcaggagc
     3601 gagcaaaggc aaagctattt ttaaccaata taaaaaattg cctccaccta acattttaca
     3661 agcatttaaa tgtgaatttt caagactttt aaaagctgga agcaaaagca agattgccaa
     3721 aggaatttga aaatacacat aaacaatatt taccccaaaa ttagcataaa cactaacaaa
     3781 aggctctatg cctaaatttt tcaaaaacac attaactaca ccattgcttc caagaactat
     3841 aatgaaagca aaagctaaag gaactcctga aaaattactt atcatagtat ttaaagaaaa
     3901 aagaaattta catatttttg atggagctaa aataaataaa gaatagctcg ccaaaagccc
     3961 tattaaaagt ccaaaaatac tagaaataaa actgatttgt aaagaattta taatgctttg
     4021 tagatagaat ttgggctcaa aaatatgtat aaaattggct aaagaataaa tttcatcctc
     4081 ttctacataa aaagcattaa aaacaatcca aatcaaaggt gctatcataa aaaaagtaaa
     4141 aactataaaa aaaggtaaaa tacttaaaaa ggctagaaat ttttctttca ttttctggcc
     4201 tttaaaattt catcattata tctcttatcg tgtttaagtc ctaaaatttc acagacactg
     4261 ccacaaattt catcctgttt tatcttggca ttttcatacg aaaaagcact accaaaagtg
     4321 aaaaaaggca ctaaaatttc atcttcgctt aagcctccat gacttttacc ctctgtcata
     4381 ccatgatcgc ttgtgatgat tacattaata ccttgttcta accaagtagg caaatactca
     4441 gaaatcaaat tatcaacttt tttggtttta ttagcatact caatagagtg tgagccaaat
     4501 ttatgtccta catcatctat attcatagag tgtataagag taaaatctag attatattta
     4561 tttcttaaat gctccccatc tgcaaataaa tgagaatcta aataatcatc ttcataataa
     4621 aaatgtccat aaggcaaagt taaattttca tcttctatgt ggcgatgtaa agaaggaata
     4681 aattcttttt tattataaag ctcaaaaacc caatgataag ctgcgcctcc agcttttaag
     4741 ccttgttctt tgcaaaggtc aaaaatgctt gtttgttttg aaaaactcaa tttattatta
     4801 attatcccac ttaaaacagg ctttacgcct gttaataagc actcgtataa aggacgagac
     4861 atactaggaa gttcgcattc taaagaataa aatttgccta aattctcttt gcaaagcgca
     4921 tttaaatatc ccatatttat actagcactt ttacaattta agccatcaag cacaactaaa
     4981 atagctttgg acatcattta ctctttaaaa aatcttttac ttcaagtaaa ataaattcat
     5041 tatcatcagt tttattaggt tctctacttg aagaataagg aaagttattg tcattttcta
     5101 cgactatatg agagtcatct actatatcca caccttctat ggtttcaaaa ggaaaaacaa
     5161 atttatcatt taccaaaggc tttttagaaa ttttatttct atccttaata tttaaaagat
     5221 ctatataaga aattttttga gcttcatgag ttttatcatc taatttaacc ttataaattc
     5281 ttttaaattg agctacatta ttaaaacaat gcttagtatc ttcaccttct ttgcaagcct
     5341 tatctttagt gccttctttt tgatctcttt ctatgatgat gccgtattta tcatctatca
     5401 tattaaaatc acctatggaa tggcttttat cttctaagaa atatttataa gtttttccag
     5461 tgaatttttt attttttaca ttaaattcta tgattcttag atattcttta cctttttcat
     5521 tctcataagc gttgttatta taaatgcttc cttctaaaag caaataaagt ttagaaccat
     5581 ctttagagct tgccatagct tcaaagcctt tagaacgctt gatattaaat ttctcatttt
     5641 ctccatcagg cttatcgcta aattttaaac ttggattatc aggagaaata agttttttac
     5701 cctccacata cacatcaaaa acttctttta aattcccatt cttatcaaaa tgaagcaaat
     5761 aaggaccaaa ttcatcacct atataaaatt catcattgat aacctgtata ctctcagtat
     5821 caaaatcaac cccacttaaa tacctttctt tggttgtttc ggtggttata ggataggggt
     5881 atttatcact atctttaaaa aaaactgttt ttaaaagttc gtattttgag tttttaaaat
     5941 caaatttaaa ctcgtgagca taaagcatgg catcataaga attatacttt ttacccaagc
     6001 cattatcgct aattacccaa aaaacatctt tttttggaat atattttatc ccactatgtc
     6061 cttgtatagg ttgattttta aaaggtaaat aaaaatctgt ttccctgttt cccttagatt
     6121 taaaagttcc aattttttct tctctagcga tatttgcaaa tttcccataa gttttaaaaa
     6181 aatcaggagc atccttagga ggttttactg tacttttaga atctatgata atatgccctg
     6241 ctaaattggc ctcatactct tgaactccaa ataaaacact gcaaagcata gcacttgtta
     6301 aaataacctt tttcatccaa tctcctttat ttcatatcca ctataacttt ttcttgccaa
     6361 agttgtggca attctttagc gcttttttcc caagcttttt gatctttgat tgctcttgca
     6421 tttttgtatt gctcacttgg taaaagttta gcttttatat catctggcaa ggtaatatga
     6481 tcaattctta ttggccttgc ataacctttt gctagattga tttgtccttt atcagaaagt
     6541 ataaactcac gggctaattt agccgcattt ggatgttttg cgtatttatt gataatagtt
     6601 gtataacccg aaataacact accatcagca gggattaaaa cttcataacg atctttgccc
     6661 actttatctc tatagcctaa accattaaaa tcccaaacta aacccacttc aacttcacct
     6721 ttttcaagat tggctatact tacatcatta tttacaagtc ttccttgttt ggctaaagta
     6781 ttaaaaaaag ctaaagcagg acttaaatct ttttcatccc cacctaaggc ataattagct
     6841 gccaaaactg cactcacagc ttgagctgct acacttacat cgcccacggt aattttataa
     6901 tttcccttaa gcaaatcttg ccaagtttta ggtatatctt ttactacatc tttattgact
     6961 ataaaagcta tggttcctgt ataagctaaa agccaatttc catctttatc tttagcccaa
     7021 gttggaattt gatcccagta acttgtctta aaaggctgag ctactccttg tttaaccgct
     7081 atctctccaa aagacgcccc tacatcccct atatcaccgc ttgcattttt cttttcggtt
     7141 ttaaatttag caatttcttg agctgaactc atatctgtat cactatgttc tatgtcataa
     7201 agatttttaa gatctgccca agtatccttc cagtttgccc aagtatcagg catagctaaa
     7261 gaatttaccc taccttctgc ttgcgcagct ttaatcaaat tctcatcaat agcttgtgaa
     7321 tttgaaaaca ataaagcaac aagacctaaa cttaagaaaa atttcttact catttttttc
     7381 ctttcaaaaa atattttgga aatttaatga gttttagaaa cattttagaa acaagttaat
     7441 ttttaagcaa acaaggttat aattttaaag tcataaacaa ggagcgatca tgctttatat
     7501 ttatatcaaa actcaaaatg ctttagttca aagaatcaat tttaatctcg atagtcaaga
     7561 actaccgcaa aatattttat ggattgattt acttcatcca agtgcagcag aaattgcttt
     7621 tatatcaagt gaatttaatc ttgagtttcc tacaaaagaa gaaagggaag aaatagagct
     7681 tagcgcaaaa tattgggaag ataatgcaac aataaccatc aatgctcatt ttttagtaag
     7741 agatcttaaa agtgatgaag aagatagaaa tttaatcaag cttcgcacag aaattgttac
     7801 ttttgctacc gctaaaaata tcttatttac tataagatat aacgaattta gcacttttga
     7861 agaaattcaa gcaaggattt tagctagtcc gaagaatttt gaagatggtt ttgatattat
     7921 tgataaaatg tttgaagtac gcgttgaaaa agatgcggat ttactagaat ggatagataa
     7981 agaagcaaga cgcttaagaa caagtgtttt agaaaaaaaa gatgaatata gttatgatga
     8041 aatgctaaag gatatttcaa gtttgcaaga gcttaatatg cgcgtaagag attctttatt
     8101 tgataagcgt cgcgctatga cttctttgtt aaaaagcgat aaaatcgata aagacataaa
     8161 acaaaatctc actatagttt taaaagactt aaattctttg gttgaattta gcgtttcgca
     8221 acttaatatc ttagataata tccaaaccat tttagtcagt caaatcaaca tagaacaaaa
     8281 caaagtcatt aaaattttca ccgttgcaac tgttgccatg atgccaccta ctttaatagg
     8341 aactgtttat ggtatgaatt ttaaattcat gcccgaactt gaacttcact atgcttatcc
     8401 catagtgctt ggcgtgatgg taatttctat cattttacct ttggttgttt tcaagaaaaa
     8461 aggatggtta taaaaattta ttaaggagaa acaatggata caataaacat aggaatttta
     8521 accctaagcg atagagcaag tagtggtata tacgaagata aagccactgc tgaaattgaa
     8581 agagtgttaa attcatatat aaaaaatgat attatttatc ataaagaatt aatccctgat
     8641 gattatgatt tgatcattaa aaaattactt tatctagcag atgaaaaaaa atgcgatttg
     8701 attgttacaa gcggaggtac aggtccagca cttcgtgatg taaccccaga agccacggaa
     8761 gccgtgtgtg ataaaatgat gccaggtttt ggagaactta tgcgcttaga aagtttaaaa
     8821 tatgtcccaa cagctatact ttcaagacag agtgcaggaa ttcgcaataa atcttttatc
     8881 attaatttac caggaaatcc taaggctata aaagaatgcc tagagcctgt ttttccggct
     8941 ataccttact gtatcgattt gatagaaggt gcttatatag aagcaaatga tgaagttatt
     9001 aaggtttttc gccctaagaa aaaatgtcaa aattaaaatt tattagctct gataagtctg
     9061 cttaattgtc tagcaagcag acttgccgaa gcttcatctt tgcttatctt ttgcacttta
     9121 tttttaaact tacaaagtct gtcatctaaa atcacatcat tgattggaat tttaggcttt
     9181 tctttttgtt tttgtgaaat ctttttctta aaaaacattc tttaatcctt ttttataaat
     9241 atataccaac ttagttgaaa agaatattat tttagatttt aaactattaa ctttatttca
     9301 ttattttaag ctagaattcg caaaaaacta atcaaggaaa aataatgact ttaattgcaa
     9361 ttttatgtct ttacacagca cttttatctt ggatttccta tgctcaaatt cgtttcttag
     9421 aaagagaaaa agacaaacaa gctcaaattt taagcgaaaa agactatcaa aatgcagcag
     9481 atattgccat cgaaaatgaa aaatttaaac tattttcc
//
LOCUS       DAPOLW010000056         9416 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.056, whole genome shotgun sequence.
ACCESSION   DAPOLW010000056 DAPOLW010000000
VERSION     DAPOLW010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9416
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.056"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..468)
                     /locus_tag="ROE18_000972"
     CDS             complement(<1..468)
                     /locus_tag="ROE18_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HDX3651156.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNALSILAKEQDLSKARAVATAAFRKASNTNEIFAHLKEEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFRKSFKSFDFGIISFYEKN"
     gene            524..1297
                     /locus_tag="ROE18_000973"
     CDS             524..1297
                     /locus_tag="ROE18_000973"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HDX3651157.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIAARHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPVNLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHAKLKQSIEKLQNANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYANLHNAL
                     FSNISHTAFALKELGQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGLNYKNVK
                     PVVKIKEICELNIGQSIVARSVFTGLQNAILEMKELIKR"
     gene            1294..2388
                     /gene="pdxA"
                     /locus_tag="ROE18_000974"
     CDS             1294..2388
                     /gene="pdxA"
                     /locus_tag="ROE18_000974"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HDX3651158.1"
                     /translation="MKKLAISIGDINGIGLEILVRSHEELSKICTPFYFIHESLLDKA
                     SKLLNLKLFNAKIVAFKDGKDYEFNFVKKENSLEIYSFYLPLGFKVDENFEIKAGEID
                     TKSGLYSFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKMGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNAFLYSKKDEKFFKKALKDGNLQKELLLNFKGNGVYLP
                     YPLVADTAFTKAGLKNCNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKINTKSYFEAAKFAINLNSKA"
     gene            complement(2378..2980)
                     /locus_tag="ROE18_000975"
     CDS             complement(2378..2980)
                     /locus_tag="ROE18_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651159.1"
                     /translation="MKKIILLLGLSLASLGALSFDELIYKDEVKPSFDCSKIKYDGKS
                     DDELMICNKIGVRNEFENKKLALVDNIYSSLYQNISKKADKKMKKDFKAISKKMLKER
                     KICIKNMQNTKAGENPILSLLNASDCMQEAYIKALLELMQRAKKDTKIKEVLEQIFKN
                     KVDKYENLLTQSLNTNKDLQDLIDSLAKEDLIDSRAKFKL"
     gene            3093..4292
                     /locus_tag="ROE18_000976"
     CDS             3093..4292
                     /locus_tag="ROE18_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDX3651160.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTAFARF
                     IAGTQHGVFFVIATLAVSTITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKILVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMYSKILIIFSVALIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLAGLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSFTKV"
     gene            4348..4668
                     /gene="ciaC"
                     /locus_tag="ROE18_000977"
     CDS             4348..4668
                     /gene="ciaC"
                     /locus_tag="ROE18_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HDX3651161.1"
                     /translation="MVVDNTQKTSNAIFSITTKVKEKNTSADEFQATLNEVKNKEEKE
                     DKKTNSSKFTNEDIDLGAVREDFRSYAWQKMREDQYKKNEETLLNKLFATIDAGNATN
                     NTKA"
     gene            4852..5874
                     /locus_tag="ROE18_000978"
     CDS             4852..5874
                     /locus_tag="ROE18_000978"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HDX3651162.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFDNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFKFSF
                     NYMLEISNFIKSKYPNIPVILFPKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVEKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            5871..6773
                     /locus_tag="ROE18_000979"
     CDS             5871..6773
                     /locus_tag="ROE18_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HDX3651163.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIDKIISEVKAMLEKNIEFDFLTLTANGEPSLYPHLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVTKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFKALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPVLLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKV"
     gene            complement(6770..7966)
                     /locus_tag="ROE18_000980"
     CDS             complement(6770..7966)
                     /locus_tag="ROE18_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651164.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVTEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFCMQNDFLNFQKKIDVDSALDLLKEKFETTSQNLTKIS
                     HEKDRYLHLLEENLYQLGNISNAMRCLNEGYNKEINSLILNALNSQKDQIRLELNEAL
                     EHHKSIIGTSHGKVLQFEASVAIVNNDELENFLLANLLSYFGIESTCFKNLSFDVNDF
                     HLIFIKDKIFNENVKKNYDFIVMGRHKNTHYEYFLTLPFEKKDLENILQNKLDKVCAL
                     KFKTPYQNNVLLFKQNDFDATLFFNIIEKQCDKNICINSFSQLKQELSKETYRLILLD
                     YELIKFDLEQMRNLLSAYKKQHPQSHIIFFSKEKVRDFDCVSEVLSDVSRNDLIILLR
                     KYLPKA"
     gene            complement(7968..>9416)
                     /gene="uvrC"
                     /locus_tag="ROE18_000981"
     CDS             complement(7968..>9416)
                     /gene="uvrC"
                     /locus_tag="ROE18_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit C"
                     /protein_id="HDX3651165.1"
                     /translation="FPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQKAS
                     CKSPCIFYQISRCLAPCDKLISKEKYLEILDEAIHALLNPSVLLKNLEKQMLVLAQNE
                     NYEEAAKVRDQIAMIKDLEVKVEIDIAKLEDFEVFALAFKNSMLSTLRFVVQNGKIIS
                     ANSKITPIKNDIQWDKNEIYKQLILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQR
                     FDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKFYFELENLPNDI
                     EIFDNSHLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFDKI
                     PPPDLWLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLK
                     GEFNLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANLGLSSGVIQKLL
                     AYYGNFESIYKADFKDLTMLVGRKAAQKIKEN"
BASE COUNT         3321 a         1474 c         1317 g         3304 t
ORIGIN      
        1 atttttttca taaaaactaa taataccaaa atcaaaactt ttaaaacttt ttctaaaaga
       61 aagctcacaa gaagcccctc ctaaatcaca atacgcaaac tctccccaaa ttttaagcct
      121 tcttaaacct gattgcatac ctaaaacact aatcttagct tcacttttgg catctataag
      181 cttaaaatca atcccaaatt cttcttttaa atgagcaaaa atttcatttg tattacttgc
      241 ctttctaaaa gctgcagtcg ctacagctct tgctttgctt aaatcttgct ctttagctaa
      301 aatactcaaa gcatttttta atctttgtat ggcttctttc gaaatttctc cactttgatt
      361 tagatttttc gctgccccaa taacaaattc atattctttt aatttattta atttttcatc
      421 catttgtact gctcttaaag tattcgaacc aagatctata cctaacatga ctttccttgt
      481 ttgattttat agtataatag caaaaaagtt ctaaaggaaa aatatgcttt taggtgtaaa
      541 tatcgatcat atcgcagtgt taagacaagc tagaatggta aatgatcctg atcttttaga
      601 ggctgctttt atagcagcta gacacggaga tcaaatcact ttgcatgtaa gagaagatcg
      661 ccgtcatgct caggattttg acttggaaaa tatcataaaa ttttgcaaaa gccctgtcaa
      721 tttagaatgt gctttaaatg atgaaatttt aaatttagct cttaaactca aaccccaccg
      781 cgttacttta gtgcctgaaa aaagagaaga gcttactaca gaagggggac tttgtttaaa
      841 tcatgctaaa ttaaaacaaa gcatagaaaa acttcaaaat gcaaacattg aagtttcact
      901 ttttatcaat cctagtttag aagatataga aaaatcaaaa attttaaaag cccaattcat
      961 agagcttcat acaggacatt atgcgaattt gcacaacgca ctttttagta atatctctca
     1021 tactgctttt gccttaaaag aacttggtca agataaaaaa accttgcaag ctcaatttga
     1081 aaaagaatta caaaatttag aactctgtgc caaaaaaggc ctagaacttg gcttaaaagt
     1141 agccgcggga catggtttaa attacaaaaa tgtaaaaccc gtagtaaaaa ttaaagaaat
     1201 ttgcgagcta aatataggac aaagcattgt agcaagatct gtatttacag gacttcaaaa
     1261 cgctattttg gaaatgaaag aacttattaa aagatgaaaa aactagccat tagtataggc
     1321 gatataaacg gcataggact tgaaatttta gtgcgttctc atgaagaact aagcaaaatc
     1381 tgtacacctt tttattttat ccacgaaagc ttgcttgata aagcttcaaa acttttaaat
     1441 ttaaaacttt ttaatgcaaa aatcgtagct tttaaagatg gaaaagacta tgagtttaat
     1501 tttgtaaaaa aagaaaattc tcttgaaatt tactctttct accttccttt aggctttaaa
     1561 gtggatgaaa attttgaaat caaagccgga gaaatagata caaaaagtgg actttatagt
     1621 tttttaagtt ttaaggcggc aagttatttt gtctatgaaa aacacgccca tgccttgctt
     1681 accctaccta tacacaaaaa agcctgggaa gatgcaggac ttaaatacaa aggacacacc
     1741 gatgctttaa gggatttttt taaaaaaaat gccattatga tgttaggttg caaagaactt
     1801 tttgtagggc tttttagcga acatatacct ttagctaaag tgagtaaaaa aatcactttt
     1861 aaaaatttaa gtatcttttt aaaagatttt tacaaagaaa cgcattttaa aaaaatgggg
     1921 cttttaggtt ttaatcctca cgctggagat tatggagtta taggtggaga agaagaaaag
     1981 atcatggaaa aagctatagc ctttgttaat gcctttttat actctaaaaa agatgaaaaa
     2041 tttttcaaaa aagccttaaa agatggaaat ttacaaaaag aattgctttt aaattttaaa
     2101 ggcaatggcg tttatctacc ctatccttta gtagctgata cagcttttac taaggctggt
     2161 ttaaaaaact gcaatcgttt agtggctatg tatcacgatc ttgcccttgc tcctttaaag
     2221 gccttgtatt ttgataaaag catcaatgta agtttaaatt tacctatcat acgcgttagc
     2281 gttgatcatg gcacggcctt tgataaggcc tataaaaatg ctaaaatcaa cactaaaagt
     2341 tattttgaag cggctaaatt tgcaatcaat ttaaattcta aagcttaaat ttagccctag
     2401 aatcaatcaa atcttcttta gctaagctgt ctatcaaatc ttgcaaatct ttattggtat
     2461 ttaaactttg agtgagtaaa ttttcatatt tgtcaacttt atttttaaaa atttgctcta
     2521 aaacttcttt aatctttgta tctttttttg ctctttgcat aagttctaat aaagccttaa
     2581 tataagcttc ttgcatgcaa tcacttgcat tgagtaaaga taaaatagga ttttcccctg
     2641 cttttgtatt ttgcatattt tttatacaaa tttttctttc tttaagcatc ttttttgaaa
     2701 tggctttaaa atcttttttc atctttttat ctgctttttt tgaaatattt tgatataaac
     2761 tactatagat gttatctact aaagcaagtt ttttattttc aaattcatta cgcacaccaa
     2821 ttttattgca tatcataagc tcatcatcac ttttgccatc atatttgatt ttagagcaat
     2881 caaaactagg ttttacttca tctttataaa taagctcatc aaaactcaaa gcccctaaac
     2941 tcgccaaact taaaccaagc aataaaataa tttttttcat tatttacctt taaaattttt
     3001 attttatttt aacaaaaata ttttgaattt tttaaggaaa ttaagccttt attttattat
     3061 aatgcatttt tattttttat aaggaactta aaatgcaaaa ttacaaaaaa gctctttttg
     3121 cactagctct tagtgctttt tgtatgggcg taactgaatt tgttatggca ggagttttgg
     3181 ttgatgttga agcgtatttt agcgtagatg caaaaaccgc gggctatctt acaaccttat
     3241 atgctatagg tgttgttata ggtgctcctc ttatcaccat acctttaagt cgttttcata
     3301 gacatacaca acttttaatc aatcttggaa tttttgcttt agcaaatttc atcatctttt
     3361 ttagccaaaa tttctatctt actgcctttg cacgctttat agcaggaaca caacatgggg
     3421 tattttttgt cattgccacc ttagctgtaa gtactataac accagatgat aaaaaatcaa
     3481 gtgctctagc tataatggtc acagggctta ctgtagcctt agttactgga gtgccgcttg
     3541 gaacttttat agggcattat tttggcttta aatttatctt tttactcatt tttatcatta
     3601 caagcctagc attttttgga gtatggcata tgatgcccaa aaatttacat cctagcccaa
     3661 ccagtcttaa aaatctaatc cctgcttttt ctcatcaaaa tttgttaaaa acttatacta
     3721 taaccatttg tagttgtggg gctcaatttg ttctttatac ttatttgcaa aaaatacttg
     3781 tagaaataag cggttttaaa gtccaagata cagcttatat cttgctttta tatggaattt
     3841 gtgcaatttg tgggaattta tggggcggaa aaatagtaga taaaaaaggt gctatttttt
     3901 ctttgcgtct tattttaagc atacaagttc tagtattttt aagtgtattt ctcaccatgt
     3961 attctaaaat tttaatcatt tttagcgtag ctttgatagg attttttgcc ttttcaacca
     4021 tacctgcact aaaaatgctt agcattacta aagctaaacg ccatacttat aaagtcatag
     4081 acagtacagt aagtgtgaat gaagcagctt ttaatgtagg catagcttta gcaagttttt
     4141 taggtgggat tgttttagca ggattgggta tagaatttaa tgctttattt tcagcacttt
     4201 ttgtaagccc tgctttgatt tttgccttgc tttttgccaa agataaatta aattataaaa
     4261 aatttcaaag aaaaagtttt acaaaggtat aaattggaat agaaattgct tgcttattta
     4321 atgtaaagtt aaataaagga ggagaaaatg gtagtagata atactcaaaa aacatcaaat
     4381 gctatcttta gcatcacaac taaagttaaa gaaaaaaata cttcggcaga tgaatttcaa
     4441 gccacattaa atgaagtaaa aaacaaagaa gaaaaggaag ataaaaaaac aaactcaagc
     4501 aaatttacta acgaagatat tgatcttggt gctgttagag aagattttag atcttatgct
     4561 tggcaaaaaa tgagagaaga tcaatacaaa aaaaatgagg agactttgct aaataagctt
     4621 tttgctacaa ttgacgcagg aaatgccaca aacaatacaa aggcttaata tacaaatcaa
     4681 tcaaaactca aactacataa acgagaattc caataattct cataaaattt ctaataactc
     4741 tggataaaat gaaaaaattt attatttcct ctatatgaag aaaatataga aaaattgacc
     4801 aatttaattt attaaattct gttataattt tgctaaaaac aaaggaaaat aatgattttt
     4861 atcgatgctt gctttaaaaa acctacaccc tacaccccta tttggatgat gcgtcaagca
     4921 ggaagatatt tgccagaata tatggaagta agaaaacaag cgggtgattt tctctcttta
     4981 tgcaaagact ataaaaaagc ttctgaagtt tctttgcagc ctattgatat tttagatgta
     5041 gatgcagcaa tcattttttc agatatttta gttgttcctc tcgaaatggg tatgaattta
     5101 cgttttgaaa aaggagaagg gcctgttttt gataatccta tttcaaccct agaagactta
     5161 gaaaaacttg acgatcaaaa tgcgcataaa aaattaaatt atgtctatga tgccttaaag
     5221 cttactagag aaaaattatc tcaaaataag gctttaatag gattttgcgg aagcccttgg
     5281 actatagcta cctatatgat agaaggaagt ggaagtaaaa attatgcaaa gtgtaaaaaa
     5341 atgctttatc aaaacccaga acttttacat aaaattctaa ataaactaac tcaagtttta
     5401 aaactttatt tagaagagca aattaaagca ggtgccaatg ctatacaaat ttttgatagc
     5461 tgggcaagtg ctttagaata tgataagttt tttaaattct cctttaatta tatgcttgaa
     5521 atttcaaatt ttattaaaag caaataccca aatatacctg taattttatt ccctaaaggc
     5581 attagcggtt atttggatag aatcgatggt aattttgatg tttttggagt tgattggagc
     5641 actccgcttg atttagcacg tgataaacta tcgcacaaat acactcttca aggcaacatg
     5701 gaaccttgta gactttatga taaaaatgcc atcaaagaag gagtcgaaaa aatactaaaa
     5761 accatgcaaa ataaagctca tattttcaac ttaggacatg gaatcttgcc tgatattcct
     5821 gttgaaaatg caaaatattt tatcaagctt gtacaagaaa gttcagctaa atgaaaatac
     5881 tctttggtcc tgttagctca aggcgttttg gaagatcttt gggtatagat ttaagcccta
     5941 gcaagaaaca atgcaatttt gattgtgttt attgcgagct tgatccaaaa aaagcccaag
     6001 aaaaacaaga tgaaattatc agcatagaca aaattatctc tgaagttaaa gctatgcttg
     6061 aaaaaaatat tgaatttgat tttcttaccc ttactgccaa cggagagcct agtctttatc
     6121 ctcatttaaa tgagcttatt ttatctttac gtagcattgc taaagataaa aaattgctta
     6181 ttttaagcaa tggtacagct gtattagatg aagacaaatt taatgctttg ctaaaactag
     6241 atgtggtcaa atttagccta gatagtgcag ttactaaaac tttttatcgt attgatagag
     6301 ctttaaaaaa cattgattta gaaaaaatga tagaaaaaat ggcagatttt agagctaggt
     6361 ttaatggaga tttgattatg gaaattctag ttgttaaaga tcttaatgat aacgaagaag
     6421 aatttaaagc gctcaatcaa gctttaaaaa aaatcatgcc cttaagagtt gatctaagca
     6481 ccatagatag acctcctgct tatgctgtta aaaaagtaag cgaagaaaaa cttttagaac
     6541 tttctaaact tatagattct actcccgtac tcttagccaa aaggcattat gaaggtgaaa
     6601 aactaagctt caatgaagaa gaattattaa aaatgcttca tttacgctca caaagcgaaa
     6661 tagacattga agtgaaattt gatgaacaat ccaaaactct cttaaatcaa cttatcaaag
     6721 aaaaaaaggt aaaaattctc gatttagctg gagttaaatt ttataaagtt taagcctttg
     6781 gcaaatactt tctaagtaaa attataagat catttctact tacatcactt aaaacttcac
     6841 tcacacaatc aaaatcccta actttttcct ttgaaaaaaa gatgatatgg ctttgcggat
     6901 gctgtttttt ataagcactt agcaaatttc tcatttgctc aagatcaaat ttaattaatt
     6961 cataatcaag caaaatcaaa cgataagtct ccttgcttaa ttcttgtttt aattgactaa
     7021 aagaatttat acatatattt ttatcacatt gtttttctat tatattaaaa aacaaggttg
     7081 catcaaaatc attttgttta aaaagcaata cattattttg ataaggggtt ttaaatttta
     7141 aagcgcaaac cttatcaagc ttgttttgca aaatattttc aagatctttt ttttcaaaag
     7201 gtaaagttaa aaaatactca taatgtgtat ttttatgccg acccatcact ataaaatcat
     7261 agtttttctt tacattttca ttgaaaattt tatccttgat aaaaatcaaa tgaaagtcat
     7321 taacatcaaa acttaaattt ttaaaacaag tgctttctat gccaaaatac gaaagtaaat
     7381 ttgcaagtaa aaaattctca agctcatcat tattaactat ggccacactt gcttcaaatt
     7441 gtaaaacctt tccatgagat gttcctataa tgcttttatg atgctctaaa gcctcattta
     7501 attctaatct aatttgatct ttttgagaat ttaaggcatt taaaattaaa gaattaattt
     7561 ctttattata cccttcattt aagcaacgca ttgcattgga tatatttcca agctgatata
     7621 aattttcttc caataaatgc aaatatctat ctttttcatg ggatatttta gttaaatttt
     7681 ggctcgtagt ttcaaatttt tcctttaaca aatcaagcgc actatcaaca tcaatctttt
     7741 tttgaaaatt taaaaaatca ttttgcatgc aaaaaatttt ttgatatatt ttgtttatat
     7801 tcctattttg cctaaaagca aaaataaaaa gtgttaaaga taaaacaaaa atgctagaaa
     7861 acatacctat tttcagttgt tcagtaacac tatcaagctt tgagatatca atacttaaat
     7921 acgctaaaat tagattaaaa ataaaaatta tccctgctaa tatcaaatca attttccttt
     7981 atcttttgcg ccgctttcct gcctacaagc attgtaagat ctttaaaatc ggccttatat
     8041 atagattcaa aatttccata atacgctaaa agtttttgta taacccctga actaagtcct
     8101 aaatttgcaa gcttagaact tttcaagtcc tgttttttct tagtattttg atgaaagcta
     8161 atagcaaaac ggtgtgcttc atctcttaat ttctgtaaga attgtagttt tttatcgtta
     8221 atacttagat taaattctcc ttttaaggaa tgaattttat ccttagcacc ccctttagct
     8281 ctatgtgctt ttgcatcgat tttttctttt gaaatagcta aaatatcgac atttgcccca
     8341 ctacttacaa tgatttcttt agccaaatca agcaaagcct ttcccccatc tataagccat
     8401 aaatcaggag gaggtatttt atcaaagtcc aaagccctac gcgttaaaac ttcacgcatt
     8461 tgatcatagt catttttatg ttttaaatga aattttctat attttgactt atcccaagaa
     8521 tttattctat aagttaccat agctccaaca tttgccacgc cttgcaaatg agaattgtca
     8581 aaaatttcta tatcatttgg taaattttca agctcaaaat aaaactttaa ttctttttgt
     8641 atagtaaaat catgattttt ttgctctttt tctatattta aaagggcatt ttgaaaagcc
     8701 aaatcacaaa ttcttctttt ttctcctatt ttagggattt taatactgat ttttttatca
     8761 aacctttggc ttaaaatttc ttctaaaagc actctatctt caaattcttc ataaacataa
     8821 ataacatttg caagcaaagg aatatccatg ctaaaatttt ctaaaatcag ttgcttataa
     8881 atttcatttt tatcccattg tatatcattt tttataggag taatcttaga atttgcactg
     8941 ataatttttc cattttgcac cacaaaacgc aaggttgaaa gcatggaatt tttaaaagct
     9001 aaagcaaata cttcaaaatc ttctaatttt gcaatatcta tttcaacctt aacttccaaa
     9061 tctttaatca ttgcaatctg atctcttact ttagctgctt cttcgtaatt ttcattttgt
     9121 gctaaaacaa gcatttgttt ttctaagttt ttaagcaaaa cactaggatt taaaagtgcg
     9181 tgtatagcct catctaaaat ttcaaggtat ttttctttgc tgatgagttt atcacaaggc
     9241 gcaagacaac gagaaatttg ataaaaaata caaggggatt tacaacttgc tttttgcttt
     9301 aaaggatagt ataaataaag cgcatctaaa agctctctag cgcctttaaa aaaagggcca
     9361 aaatatttaa ttttgctttt ttttactaat tttctagtga tctcaaagcg tggaaa
//
LOCUS       DAPOLW010000057         9401 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.057, whole genome shotgun sequence.
ACCESSION   DAPOLW010000057 DAPOLW010000000
VERSION     DAPOLW010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9401
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.057"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            9..614
                     /locus_tag="ROE18_000982"
                     /pseudo
     CDS             9..614
                     /locus_tag="ROE18_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864182.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
     gene            623..1164
                     /locus_tag="ROE18_000983"
                     /pseudo
     CDS             623..1164
                     /locus_tag="ROE18_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858626.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
     gene            1192..2121
                     /locus_tag="ROE18_000984"
     CDS             1192..2121
                     /locus_tag="ROE18_000984"
                     /inference="COORDINATES: protein motif:HMM:NF012801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDX3651166.1"
                     /translation="MVALYGENEYFITDDLIFTTGLRYIYSNLFDSEFTPRIYLVYHL
                     NDNIAFKGGVSKGYKTPSAKQLTNGYYNYANGNALFGNPDLKPEESINYELGADFRVF
                     DFAHYSITGFITDFTNQISSEYLTGMQNGINCSNGTVCKRPINLGKTQTKGIEFAFNT
                     KTYNGFSLNSSYTFMDNRYKDSQKNWFGGDRIENLPRHIAMLKLNYERGKFNSYIKTR
                     ARLDTIAKARVGGNGSLPWQKYKPFYIVDLGINYKINKQSSLSFAVQNLFDKNFFDPQ
                     VTRWDGANPAGYANRYQDYTEGRSFWLSYKYDF"
     gene            2204..2800
                     /locus_tag="ROE18_000985"
     CDS             2204..2800
                     /locus_tag="ROE18_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HDX3651167.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFAYESNGRLCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDDMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFVEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNMIRTPLLDFAYMWFLKEKWGKLKII"
     gene            complement(2832..3929)
                     /locus_tag="ROE18_000986"
     CDS             complement(2832..3929)
                     /locus_tag="ROE18_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HDX3651168.1"
                     /translation="MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLGNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(3939..4154)
                     /locus_tag="ROE18_000987"
     CDS             complement(3939..4154)
                     /locus_tag="ROE18_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HDX3651169.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLS
                     SMEISTLKKEKLHVKDELSQYLANYKK"
     gene            complement(4339..4533)
                     /locus_tag="ROE18_000988"
     CDS             complement(4339..4533)
                     /locus_tag="ROE18_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HDX3651170.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
     gene            4673..5320
                     /gene="rpe"
                     /locus_tag="ROE18_000989"
     CDS             4673..5320
                     /gene="rpe"
                     /locus_tag="ROE18_000989"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HDX3651171.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFVDLFISLKPKFISFHMESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLIHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            5317..6072
                     /locus_tag="ROE18_000990"
     CDS             5317..6072
                     /locus_tag="ROE18_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HDX3651172.1"
                     /translation="MSLQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFTLKTRTTKIKDEIFCIVDIESTGGVSKGEILEIGAVKIQNYKEI
                     GRFQSFVKVKEIPENITELTGITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISKALNECGFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDAL
                     AAAEIFKYCLGKLPYHIKTTEELISFTKTARIK"
     regulatory      6100..6204
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            6261..7553
                     /gene="thiC"
                     /locus_tag="ROE18_000991"
     CDS             6261..7553
                     /gene="thiC"
                     /locus_tag="ROE18_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HDX3651173.1"
                     /translation="MKTQMNYAKEGIFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFGIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQIGAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRATHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGVQVMIEGPGHMAINEIEAN
                     MQLEKRLCKGAPFYVLGPLVTDIGAGYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERSRDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGKDVSLA"
     gene            complement(7545..8063)
                     /locus_tag="ROE18_000992"
     CDS             complement(7545..8063)
                     /locus_tag="ROE18_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651174.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKSKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFDIFLQKYFQNV
                     KIQETKPEKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(8053..8580)
                     /locus_tag="ROE18_000993"
     CDS             complement(8053..8580)
                     /locus_tag="ROE18_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651175.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSILFILLVYFTYTIKIA
                     LINSSIDDEKQQVIVLQNQTKQNEMLYEILFDQSQIAKNFNTQNQIVKESLRNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
     gene            complement(8577..>9401)
                     /locus_tag="ROE18_000994"
     CDS             complement(8577..>9401)
                     /locus_tag="ROE18_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HDX3651176.1"
                     /translation="SENLLEYIKNLSKHFLFYHTALFLDAKEQGLIPSTNIQDCEHFN
                     IGKISLQHILLNNALVYTATEHVEYYSELFEEYRGLDFLYSPFALLYYNMQKEKQPDD
                     QILLYGFKQGYLLAIIVAKGNTILYGDFKIFEQELGLELELPSEDNQEIENNNDDTEV
                     TLDNFNEALNNKFDLLDQENNLETLDNNDNFNLDELNQFSNDMELCRYIITSIEKFYN
                     DDKYAGVFINGILLYSESDININAIDFLESETFLEIKTKQINTLDLMIELMRKEVK"
BASE COUNT         3155 a         1202 c         1653 g         3391 t
ORIGIN      
        1 aataattttt ttttaaagga attaatttga ctcaaatcaa aaatatgaaa tttaaaaaaa
       61 gtttactgtg ttttttaatt ttatctggag ctttgttaaa agcagaagaa acatatcaac
      121 ttaatgatgt tgtggttagc gctagtggtt ttgaacaaga tttggttgat gcgcctgcta
      181 gtatttctat cattacaaaa gaagagcttg aaaaaaagcc aattaaggat ataggggagg
      241 ctataggaga tattccaggt gtagatgtga ctatggataa aacaggcact tatgatttta
      301 gcatacgagg ttttggtagt tcttatactc tagttttaat tgatggaaaa cgtcaaagtg
      361 ttgcaaatgg gttttatact aatgttttta aaggcagtga gtcaggatat ctgccgcctt
      421 tatctatgat agagcgtatc gaggttatac gtggtccagc ttctacactt tatggcagtg
      481 atgctgtagg cggtgtgata aatattatca ccaagaaaaa tcctgataaa atcgaagcaa
      541 atatagaatt taatactctt ttgcaacagc actctaatca ctatggcaat gcgggcgttt
      601 taatgcttat gtagcaactc ctttgattga agatacatta tcaatttctg caaggttgaa
      661 gtattatgat aaggcagctt ctgatttaaa atggcctaca ccggtttgga ataataacaa
      721 tcaaaaacct gataattacc aacaaagacc tgataattac caaattgcta ttcatagtcc
      781 aggtgctttt actagcttag gttttggttc taggcttaat tggacagtag atgataaaaa
      841 taatatatat tttgatatag agcgatatat taatgaaatt tcagtgaatt ctataagtag
      901 tagggctatt aaaagtgaaa aacaactttt taaggataat attgttttaa atcatgatgg
      961 taactatgat tttggttcaa ctaactcata tttacacaat atggtagcac taaggataag
     1021 gaattacata gtcaaatttg ggtaggagaa ggtaaggttg ttttaccttg gaatttaggt
     1081 caatacgata atttagtaaa tacctttggt gcaaggattg attatgagat gttaaaaaat
     1141 gatcaagcaa gcgcaggtag ttaaataaga ggtaaaaatc ttgatcaaac catggttgcg
     1201 ctttatgggg aaaatgagta ttttataacc gatgatttga tttttactac aggtttgcgt
     1261 tatatttata gcaatttgtt tgattctgaa tttaccccta ggatttattt ggtttatcac
     1321 ttaaatgata atatagcctt taaaggaggt gtttcaaaag gctataaaac tccttctgcc
     1381 aagcagttga caaatggata ttataattat gccaatggca atgctctttt tggaaaccct
     1441 gacttaaaac cagaagaaag tataaattat gaattgggtg ctgattttag ggtatttgat
     1501 tttgcacatt attctatcac aggatttatt actgatttta caaatcaaat cagtagtgaa
     1561 tatttaacag gtatgcaaaa tggtattaat tgtagcaatg gcactgtttg taagcgtcct
     1621 attaatcttg gaaaaacaca gactaaaggt atagaatttg catttaatac caaaacttac
     1681 aatggtttta gcctaaattc aagttatact tttatggata atcgctataa agatagtcaa
     1741 aaaaattggt ttggtggtga tagaatagaa aatttaccaa ggcatatagc aatgttaaaa
     1801 ttaaactatg agcgaggtaa atttaattcc tatataaaaa cacgagcaag actcgatact
     1861 atagctaaag caagagttgg tggtaatggt agtttgccat ggcaaaaata taagcctttt
     1921 tatatagtag atttagggat aaattataaa atcaataagc aatctagctt aagttttgca
     1981 gtgcaaaatc tttttgataa aaatttcttt gatccgcaag ttacaagatg ggatggggct
     2041 aatcctgctg gatatgcaaa tcgctatcaa gattatacag aaggaagaag tttttggtta
     2101 agttataaat atgattttta attttttaag gctttaatca cctttatatt ttcaaaaaag
     2161 caaaaataaa gtacaatgtg aaaaataaat aaaaggtttt attatggcgt ttaaaaattt
     2221 aaaagaactt tcttttgaaa aatcaaatta tattaagcct aagagatttg cttatgaaag
     2281 taatggtagg ctttgcactt gggattttat agaatctaaa gatagtgttt cagtgctttt
     2341 gtatcataaa gaattagaaa gttttatttt tgtacgccaa tttcgtatac cactttggta
     2401 tcatcaaatg catgataaag attatgtaaa agatgatgat atgggttata ctatagagct
     2461 ttgttctggg cttgtggata aaaaattatc tttagaggaa atagcaaaag aagaatgtat
     2521 agaagaacta ggatatgctc ctaaaaattt agaaaaaata ggagattttt atacagggtt
     2581 tggttcaggt gtaagcaagc aaagctttta tttcgtagaa gttgatgaaa aagataaaat
     2641 ttcttctgga ggtggagttg atgatgaaga gattgaagct gtttatgtta aggtgcagga
     2701 ttttgaaaaa aaatgtaaaa atatgataag aacgcctttg cttgattttg cttatatgtg
     2761 gtttttaaag gaaaagtggg gaaaattaaa gattatttag gttaaacctt aaaaaggttc
     2821 aacctaggat tttaatgatc tgactcatca agcatttctt taaatacatt gaaaagatca
     2881 agcgatgcat tttcagcaac ttcgcattta ttaattatgc tgtgttgagt aatatctttg
     2941 ctaatatctt ctgtatttgc tattgttata gcattattca tattttcatg aactttttca
     3001 tgtggctcgt taatttttaa gaagctttta ttttgcccaa atctttcttt tcctgtgcta
     3061 gcaagccatt ttcctaagcg acaagatgta tgatcggcta attgctttcc tgatttggaa
     3121 aaaatttctt tataaccatt taatttaaaa gctatatgat ctagttttgc taaagatacg
     3181 aaagcttctg aagcgatacc aactgcattt gaattagtag aatgcgcttc atttactaag
     3241 tgagtaaatt tttcggaaaa actcataata tgagcattag aatctataga aattttttca
     3301 acttgctcac tttgagtata catttcattt gcattttgct ttagaaggtt gatgttcatt
     3361 tcaacttctg tggttgcttt ttgtgttttt tcagctagtt ttcttacttc atcggcaaca
     3421 acagcaaaac cacgcccatg ttcacctgcg cgtgcagctt ctatggcagc gttaagagct
     3481 aaaagattgg tttgatcgga aacatcttta attagattaa ttacattagt aatttcatct
     3541 acgcttctat gcaatgttcc tgcaacatct cttgttttat tggctgattc tgtaatattt
     3601 cccaaagagg cattgataga attagcaata tggttaagtt catccatttc agcaagagaa
     3661 gttttagaat agctagagat aacttctgcc ttatttacat tttctaacat atcgccttga
     3721 ataatagtaa tattttttaa aaccccagtt aataaaacat ttaaaagatc tgttttaagt
     3781 ttagactcta aagccgcttg ttctaatgat gtaattttat tttttaattc taaattttcc
     3841 gattgaaatt tttcaatttt atgtgtaaga tttttatttt cttcttcaag tttttgaaga
     3901 tcagaatggt ttattttact tccaaacatt gttttgcctt attttttata atttgctaga
     3961 tattggctaa gttcatcttt tacatgaagc ttttcttttt ttaaagttga aatttccatg
     4021 ctgctaagag aagttctacc ttcttctgca tctttaatca tgtcatcaag ttcattatga
     4081 cgatcaaata gtttatcaaa atgagcatct ttacctttta gctctgacat taattctcta
     4141 tattcatgta gcataaactc tccttgtatt agtgaaattt aaaattcatt taacaaggta
     4201 ttttacacta ttaaaagata tttttagctt aaaaaataat aaaattaata ataattttta
     4261 aatgtgtgtt atataagtga tttgttaaag tttattttta aattggaaat tttaaaattg
     4321 aggaataaat cctcaaaatt atttagaatt ttgttttttt agagttctta gagtagaagc
     4381 tgcaattctc atttttctcg tggtgccatc ttctaaagtt acacgaactg ttctgagatt
     4441 aggtaaaaag cgtctttttg ttttattgtt agcatggctg acattattac ccaccattgg
     4501 acccttgcct gtgatttgac atactcttgc catttttttg tccttatgaa aatttttaaa
     4561 tggagatttt atcaaaatta agcttaaaat attccataat ttatagtttt tttaatatat
     4621 aagtcgataa aatattattt atcacattta tatatagttt aaggttttga tcatgtatgt
     4681 agctccaagt ttattgtctg caaatttttt gaaattagaa gaagaagtta aagctattga
     4741 agctgcaggt gcggatcttt tacacattga tgtaatggat ggacactttg ttccaaattt
     4801 gactttcgga ccttgcgtga tcgaaaaaat ttcaactatt agtaagttgc cattagatgt
     4861 gcatttaatg gttaaagatg taagtaaatt tgtagatctt tttatctctt taaaaccgaa
     4921 atttatctct tttcatatgg aaagtgaagt tcatcctata aggctttgtg aatatataag
     4981 aagtcaagga atccatcctg ctattgtttt aaatccacat actcctattg attctattaa
     5041 acacatgcta gaatttgtag atatggtgct tttaatgagt gttaatcctg gatttggtgg
     5101 gcaaaaattt ttacctttga tacatgaaaa aatcaaagaa ttgcgccaaa tgattgataa
     5161 aaaaaatgct aaagttttta tagaggttga tggtggtgtc aatggtttaa atgctagtga
     5221 tttagaagaa tctggagctg atattttggt ggctggaagt tatatttttt cttctaatga
     5281 ttataaaact gcaatttcat ctttaaagct tgaattttga gtttacagca aattgatcag
     5341 attatttcta tattaaataa gcaaagcaag ccttatgatt gggtgatgca agagtttgcc
     5401 aaagttgaag aattaaaaaa ttttgattta gatttagaaa cttttgagct tttggggtta
     5461 ggtttaactt taaataaaga taatattttt actcttaaaa cacgcacaac aaaaattaaa
     5521 gatgaaattt tttgcatagt ggatatagaa agtactggtg gggtgagcaa gggggaaatt
     5581 ttagaaattg gagcggtaaa aattcaaaat tataaagaaa ttggacgctt tcaaagtttt
     5641 gttaaggtaa aagaaattcc agaaaatata actgagctta cgggtattac ttatgagatg
     5701 gtggaaaatg ctccaagttt aacaaaggtt ttaagtgatt ttagactttt tttaaaagac
     5761 agtatttttg tagcacataa tgtgcgtttt gattatagtt ttatttctaa ggctttaaat
     5821 gagtgtggtt ttggcatttt gcttaatcgt cgtatttgca ctatagaatt tgcacaatgt
     5881 tgtatagaaa gtccaaaata taaactagag gttttgaaag aatttctggg cgtggaaaat
     5941 acgcatcata gggccttaga tgatgctttg gcagctgctg aaatttttaa atattgcctt
     6001 ggaaaacttc cttatcatat aaaaactaca gaagaactta taagttttac aaagactgca
     6061 cgcataaagt aaaaataaat atttaaagtg tataattaaa acataaatga cgggagcttg
     6121 tgtaacaggc tgagagtaag ctaaaagctt agaccgaacc ggatctggat aatgccagcg
     6181 tcgggaagat ttataaattt taatacttta aaaatttata ctcacccttc atttatccaa
     6241 attttttaaa ggataaattt atgaaaactc aaatgaatta tgccaaagaa ggtattttta
     6301 ctaaagaaat gcagattgtc gcgcaaaaag aaaatttaag taaagatttt ttgcttgaaa
     6361 atattgcttg cggtaaaatt attatccctg caaatattaa tcataaaagt cttgatccaa
     6421 atggtatagg ttttggactg cgtactaagg ttaatgtaaa tttaggagtt tcaaatgatt
     6481 gcgttgatta tagcgaggaa atgaaaaaag tagagcttgc tcataaattt ggcatagaag
     6541 caattatgga cttaagcaat tatggcaaaa caagtcgttt tagagacgag cttgttaatg
     6601 tttcaaaagc tatgatagga acagttcctg tatatgatgc ggtaggattt ttagaaaaag
     6661 atttaaaaca aattggtgct aaagactttt tagatgttgt atatcatcat gctaaaagtg
     6721 gggttgattt tatgacaatt catgcaggta ttaattctcg cgcaacgcat atttttaaac
     6781 aaagtaaaag acttacaaat atagtttcaa gaggaggctc tgtgctttat gcttggatga
     6841 tgatgaaaga tgccgaaaat cctttttttg agtattatga tgatttgctt gacatttgtt
     6901 taaaatacga tgtaacttta tctttgggcg atgctttgcg tcctggatct actcacgatg
     6961 caagtgatgg ggcgcaaatt tcagagctta tagaattatc gcttcttacc caaagggctt
     7021 gggatgttgg ggttcaagta atgatagaag gtccagggca tatggctatt aatgaaatag
     7081 aggcaaatat gcaattagaa aagcgtttat gcaaaggagc gcctttttat gtcttaggac
     7141 ctttggtaac agatattggc gcagggtatg atcatattag tggtgctatt ggaggagctg
     7201 tggctgcagc tagcggtgct gatatgctgt gctatgtaac acctgctgaa cacttaagac
     7261 ttccaaattt agaagatgtt agagagggta tagttgcgac taaaattgca gctcatgcag
     7321 gagatatagc taaacttcca aaagaaagat caagagatga tgagatgagt aaggctagac
     7381 aagagataga ttgggagaaa atgtttaaac ttgctattga tggagaaaag gctaaaaaaa
     7441 tgtttaatga gcgtcgccct gatgatttaa actcatgttc catgtgtgga aaaatgtgtg
     7501 caatgaatac tatgaatcaa attttaaaag gcaaagatgt gagtttagct tgaataaact
     7561 ttgagagtaa gatctataga gataccttgc tctcctgctt taagattaag tggataatca
     7621 agcttgatta agttattata gttttttaga gcatcaataa aatcataaag tcttctagga
     7681 ttgttcattg tcgctttaat ggctaagcgg ttttttagat atttttcttg tttttcgggc
     7741 ttagtttctt gaatttttac gttttgaaaa tatttttgta aaaaaatatc aaaatttcct
     7801 atattaaaat tttgctcaaa ttgctctaag cttttgttgt tttcgcttct tagagttgat
     7861 attttatctt cactaaagtc aaattttgat ttagcggctt ttaagatagc aagttgtgag
     7921 ttttctctaa gatttgcttg tttgtaattt tttaatgtcg gtaaaagtaa aaataagatc
     7981 aaggctgtgc aaacgcttat aaaacttaac gcgcaaatga taagctttaa taaatcaatt
     8041 tcttctaggc ttttatcttt catctgcaac tcctggaatt tgtttactaa tactaacaaa
     8101 acgataccac ccattatcta agcgataata ggttgtatag ctttgatcaa agatgctttt
     8161 taaaggggtt tctaaaagta gagtaaacat ttctcttgta ggagtgactc cgataagttt
     8221 taaggaatat tcgtcttgtt caacactttc aagagtaata ttatcagttt ttacaataat
     8281 atcaaataga tttcttaagc tttctttaac aatttgattt tgagtattaa aatttttcgc
     8341 tatttggctt tgatcaaata aaatttcata aagcatttca ttttgcttag tttgattttg
     8401 aagcactata acttgttgtt tttcatcatc gatagagcta ttgattaatg caatttttat
     8461 tgtatatgta aaatatacta gtaagataaa taatatacta aaaccaaaaa gtcctagcca
     8521 aattttatca aagagtgtga aaataggttt ttttcttggc tgtataaagc tataagtcat
     8581 ttaacctcct ttcgcatcaa ttctatcata agatctaagg tgttgatttg tttcgttttt
     8641 atctctaaaa aagtttcact ttctaaaaaa tcaatagcat ttatgttaat atctgattcg
     8701 ctatataata aaataccatt gataaatacc ccagcatatt tatcatcatt ataaaatttt
     8761 tcaatgctcg taataatata acggcaaagt tccatatcat tgctaaattg atttaattca
     8821 tcaagattaa aattatcatt attatccaaa gtttcaagat tattttcttg atcaagtaga
     8881 tcaaatttat tatttaaggc ttcattgaag ttatctaagg taacttcagt atcatcgttg
     8941 ttgttttcaa tttcttgatt atcttctgat ggaagttcaa gctctaaacc taattcttgc
     9001 tcaaatattt taaaatcacc gtataaaata gtattgcctt tagcaacaat aattgccaaa
     9061 agatatcctt gcttaaatcc ataaagtaaa atttgatcat caggctgttt ttctttttgc
     9121 atattgtagt aaagaagagc aaaaggggaa tataaaaaat ctaaacctct atattcttca
     9181 aaaagctcgc tataatattc tacatgttcg gtagccgtat aaacaagggc attattaagc
     9241 aaaatatgct gtaagctgat ttttcctata ttaaagtgct cacaatcttg aatatttgta
     9301 ctaggtatta atccttgttc tttggcgtct aaaaataaag cagtgtggta aaataagaaa
     9361 tgcttgctta aattttttat gtactctaat aaattttcac t
//
LOCUS       DAPOLW010000058         9370 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.058, whole genome shotgun sequence.
ACCESSION   DAPOLW010000058 DAPOLW010000000
VERSION     DAPOLW010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9370
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.058"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            86..1246
                     /gene="pglE"
                     /locus_tag="ROE18_000995"
     CDS             86..1246
                     /gene="pglE"
                     /locus_tag="ROE18_000995"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HDX3651177.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKAY
                     SKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENEIVLIEDAAEAL
                     GSFYKNKALGTFGEFGAYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENYLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGECFSFLDELENS
                     RSNRWLSTALIDFDKNELNSCQKDINISQKNITLHPKISKLIEDLKNEQIETRPLWKA
                     MHAQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA"
     gene            1248..3020
                     /gene="pglF"
                     /locus_tag="ROE18_000996"
     CDS             1248..3020
                     /gene="pglF"
                     /locus_tag="ROE18_000996"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HDX3651178.1"
                     /translation="MIFYKSKRLAFFLTSDIVLILLSVYLAFSLRFSGDIPSIFYHGM
                     MVSAIILLVLKLSFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPSRMKEEETPCIVVGATSKALHLLK
                     GAKEGSLGLFPVGVVDARKELIGTYCDKFIVEEKEKIKSYVEQGVKTAIIALRLEQEE
                     LKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILDKQ
                     SLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGRPVKIIDLAKKMLL
                     LSNRNDLEIKITGLRKGEKLYEELLIDENDAKTQYESIFVAKNEKVDLDWLNKEIENL
                     QICEDISEALLKIVPEFKHNKEGV"
     gene            3020..3913
                     /locus_tag="ROE18_000997"
     CDS             3020..3913
                     /locus_tag="ROE18_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HDX3651179.1"
                     /translation="MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQGEDRSTRSYFYRAVKLRRCVL
                     SDPYPSVLNNELCVTASMPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     SVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGV
                     SLLLLGLSVYLFTVKYKNNNI"
     gene            4026..4418
                     /locus_tag="ROE18_000998"
     CDS             4026..4418
                     /locus_tag="ROE18_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HDX3651180.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAE"
     gene            4441..5286
                     /locus_tag="ROE18_000999"
     CDS             4441..5286
                     /locus_tag="ROE18_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HDX3651181.1"
                     /translation="MQKKYYELFFIVEERYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEEFSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNCINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFHKAWCGSIDKANGLYNLIVANII
                     ADVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            5290..7227
                     /gene="ftsH"
                     /locus_tag="ROE18_001000"
     CDS             5290..7227
                     /gene="ftsH"
                     /locus_tag="ROE18_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HDX3651182.1"
                     /translation="MNNNTQNNKGNPQGNNFFNKNPIFIFAIFAIIMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSHNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NSLPTRLQELEEVKTEVKVEE"
     gene            7224..7841
                     /locus_tag="ROE18_001001"
     CDS             7224..7841
                     /locus_tag="ROE18_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDX3651183.1"
                     /translation="MKDFIAKDGYLSLIILSLVFIFMWIFYSFSILLLALIVICIFLF
                     RTPKRELVCSDEKAIFAPIDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA"
     gene            7851..8579
                     /gene="pssA"
                     /locus_tag="ROE18_001002"
     CDS             7851..8579
                     /gene="pssA"
                     /locus_tag="ROE18_001002"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HDX3651184.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLYPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKTRNQE"
     gene            complement(8570..9367)
                     /locus_tag="ROE18_001003"
     CDS             complement(8570..9367)
                     /locus_tag="ROE18_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HDX3651185.1"
                     /translation="MQKEFFQELQDILYEKNITIKFHSFQNFYEDFKSHKFIFNHEHQ
                     SIFKKNTSQQITLFHPTRIRRPKFLNSTHALAKIIHSVAHIEFNAINLALDASYRFKN
                     LPLQFYYDWLEVADEEIKHFKLLNSALEELGYKYGDFPVHDNLESALEATKDSLSFRM
                     GIVHRGLEAKGLDANPFVVQKLQSSNHSIKNLLMEYLEIILNDEIKHVKKGDTWWKFA
                     NQNKYNFIELCKTFKQFSLAGKKLNIQARIKAGFTQEECEVIEKFYS"
BASE COUNT         3192 a         1089 c         1804 g         3285 t
ORIGIN      
        1 aatttaaata tttgaatctt tgtaaatttt tttaggtaaa atagagtcaa tttataaaaa
       61 ttttgtttta cacaaaggat aaatcatgag attttttctt tctcctccgc atatgggtgg
      121 taatgaatta aaatacatag aagaagtttt caaaagcaat tatatagcac ctttgggtga
      181 atttgtaaat cgctttgaac aaagtgtcaa ggcttacagt aaaagtgaaa atgccttagc
      241 tttaaattca gccacagcgg ctttgcattt agctttaagg gtggcagggg taaaacaaga
      301 tgatattgtt ttggcttctt cttttacttt tatcgcttca gtagcaccta tttgttatct
      361 taaagcaaaa cctgtattta tagattgtga tgaaacttat aatatcgatg tagatttatt
      421 aaagcttgct attaaagaat gtgaaaaaaa accaaaagca ttgattttaa ctcatcttta
      481 tggcaatgcg gctaaaatgg atgaaattgt tgaaatttgc aaagaaaatg aaattgtttt
      541 aatcgaagat gctgctgaag ctttaggaag tttttataag aataaagctt taggaacttt
      601 tggagaattt ggagcttatt cttataatgg caataaaatt atcaccactt caggtggagg
      661 tatgcttata ggaaaaaata aagaaaagat tgaaaaagca agattttata gcactcaagc
      721 tagggaaaat tatttgcatt atgaacattt agattatggt tataattacc gcttaagcaa
      781 tgttttagga gctattggcg tagcgcaaat ggaggtttta gaacaaagag tgcttaaaaa
      841 aagagaaatt tatgagtggt ataaagaatt tttaggagag tgttttagct ttttagatga
      901 attagaaaat tcaagaagca atcgctggtt aagtacagct ttgattgatt ttgataaaaa
      961 tgaacttaat tcttgtcaaa aagatataaa tatcagtcaa aaaaatatta ctttgcatcc
     1021 aaaaatttca aaactcatag aagatttgaa aaatgaacaa atagaaacaa gaccattatg
     1081 gaaagctatg cacgctcaag aagtatttaa aggagctaag gcttatctta atggcaatag
     1141 tgagttattt ttccaaaaag gaatttgttt gccaagtggc acggcgatga gtaaagatga
     1201 tgtttatgaa atttcaaaac tgatcttaaa gagcataaag gcttaaaatg attttttata
     1261 aaagcaaaag attagcattt tttttaactt cagatattgt tttaatttta cttagcgttt
     1321 atctggcttt ttctttgagg tttagtggag atattccgag tattttttat catggtatga
     1381 tggtttctgc tattattttg cttgttttaa aactttcatt tttgtttgtt tttagaattt
     1441 ataaagtagc ttggagattt ttttctctca atgaagcaag aaaaattttt atcgctttgc
     1501 ttttagctga gttttgtttt tttcttattt tttatttttt tagtgatttt tttaatcctt
     1561 ttccaagaag tgctattgtg atagattttg ttctttctta tatgtttata ggtactttaa
     1621 gaattagcaa aagaatgctt gtggatttta aaccttctag aatgaaagaa gaagaaactc
     1681 cttgtattgt agtaggggca acttctaagg ctttgcattt gttaaaaggt gcaaaagaag
     1741 gttctttagg gctttttcct gtaggcgtag ttgatgcgag aaaagagctt atagggactt
     1801 attgtgataa atttattgta gaagaaaaag aaaaaataaa atcttatgta gaacaagggg
     1861 taaaaactgc cattattgct ttaagacttg aacaagaaga gcttaaaaaa ctttttgaag
     1921 aacttgtagc ttatggtatt tgtgatgtaa aaatattttc ttttacaaga aacgaagcaa
     1981 gagatatcag tatagaagac ttgcttgcta gaaaaccaaa agatttagat gatagtgctg
     2041 tggcggcttt tttaaaagac aaggtagttt tggtaagtgg agcaggtgga actataggca
     2101 gtgaactttg taagcaatgt attaaatttg gtgctaagca tcttattatg gttgatcata
     2161 gtgagtataa tctttataag atcaatgatg atttaaattt atataaagaa aaaattactc
     2221 ctattttatt gagtatttta gataagcaaa gtttagatga ggtattaaaa acttataaac
     2281 ctgagcttat tttacatgca gccgcttata aacatgtgcc tctttgcgaa caaaatccac
     2341 attcagcagt aatcaataat attttaggaa ctaaaatttt atgcgacagt gctaaagaaa
     2401 ataaagtagc taaatttgtg atgataagta cagataaagc agtgcgacca acaaatatta
     2461 tgggttgcac taaaagagtt tgtgagcttt atactttaag tatgagtgat gaaaattttg
     2521 aagttgcttg tgtgcgtttt ggtaatgttt taggttctag tggtagtgtg ataccgaaat
     2581 ttaaagcaca aattgccaat aatgagcctt taactttaac gcaccctgat atagtgcgtt
     2641 attttatgct tgtggctgag gcagtgcaac ttgttttaca agctggagct atcgcaaaag
     2701 gaggagagct ttttgttttg gatatgggta ggcctgtgaa aatcatagat ttagctaaaa
     2761 aaatgctttt actttctaat cgcaatgatt tagaaattaa aatcacaggt ttaagaaaag
     2821 gtgagaagct ttatgaagag cttttgattg atgaaaatga tgctaaaacg caatatgaga
     2881 gtatttttgt agcaaagaat gagaaggttg atcttgattg gcttaataaa gagatagaaa
     2941 atttacaaat atgtgaagat atttcagagg ctttattaaa gattgtacct gaatttaaac
     3001 acaataaaga aggcgtataa tgtatataaa agatatacaa agatttgaag ataatcgcta
     3061 tcgtgctagg gcttatatga gttatatttt aacaagaaat ctgcccaata aacttcctga
     3121 cattcacctt gaaacgatta aaacagcttt ggataaaata gctcatgaag ttgttgtttt
     3181 tgatgctttg tatattttag atatttcagg catgcaaata gaaaatgcga tttccttaaa
     3241 taaggctcat gaaataggac agggtgagga tagaagtact cgttcttatt tttatagagc
     3301 tgtaaaatta agacgatgtg ttttgagcga tccttatcct tcggttttaa ataatgagct
     3361 ttgcgtgaca gcttctatgc caatttacga tgataaaaat aacttgcttt ttgttgtttg
     3421 tattgatata aaacttgaag atattttaaa gattattcaa gcaggaaaat ttgaatttgt
     3481 ttttactcaa tttagtcgtt cggtatattt ttgcttcgca ctggttttat ttgtgattac
     3541 ttgtttttta tttcaaaaag gtttttttag tctttttgat aatcaagcta taggtataga
     3601 acatatgttt gaaagtacca tcgctataac tttggcttta gctatttttg atttggcaaa
     3661 aactttgatc gaacaagaag tattaggaag gacaaaaaaa gaagaaggtg gaattcaaaa
     3721 aactatggtg agatttttgg gttctattat cattgcttta gctatagaag ctttgatgtt
     3781 ggtatttaaa cttgctattg gtgatctttc tcagatgatt tatgcgattt atcttatcgg
     3841 tggagtgagc ttgcttcttt taggtttaag cgtatattta tttacggtta agtataaaaa
     3901 taataatatt tgagtaaaaa tttaagtaaa agatgatata atgctgtttt ttaaaatttt
     3961 ttagcttgat taataaggct aaaaagggta aaataaaact ataaaaactt tgaaaggacg
     4021 aaattgtgaa attgttagtt gttgatgaca gttctactat gagaaggatt attaaaaata
     4081 ccctaacaag acttggacac gatgatgttt tagaagctga gcatggcgtt gaagcttggg
     4141 atttattaac taaaaatgaa gatgtaaaag ttttaattac agattggaat atgccagaaa
     4201 tgaatggctt ggagttggta aaaaaagtaa gagcagagaa aaaatatgaa gatatgccta
     4261 tcatcatggt tacaactgag ggcggaaaag ctgaagtgat tactgcttta aaagctggcg
     4321 taaataacta tattgtaaaa ccttttactc cacaagtttt aaaggaaaaa cttgaagatg
     4381 ttttaggaac aggaagtgga gaaggtgcag ctgagtaaag gctgattttt aaaattctaa
     4441 atgcaaaaaa aatattatga attgttcttt atcgtagaag agcggtataa aaatttattt
     4501 cttgattttg cttttgattt aggtatagaa gccatagaag agaaagataa tggtgtttac
     4561 attagatccc atgagagttt agaagagttt tcatgggcac ttgaaatatt tgctcaaaaa
     4621 cttacaacta ctttcaattt aaaccataaa attatttcta atttaagtct tgtagagaaa
     4681 gaaaacaagg actggataca agaatataaa aaaggcataa aacctatctt agtggataat
     4741 gtttacatcc atacaacttg gcaagaagaa aagaagaatt gtataaatat aaagattaat
     4801 ccagccttag cctttggctc aggacatcac gaaagcacat attcttgtgt aaaattttta
     4861 caaaaatttt ctaaaagtaa attaagagct ttagatcttg gttgtggtag tggaattttg
     4921 ggtattatta tggcaaagtt tggttgtaat gttgaaattt gtgatactga tgagttggct
     4981 attgatagtt ctttagaaaa tgcaagatta aatggtgtcg attttcacaa ggcttggtgt
     5041 ggatctatag ataaagcaaa tggtttatat aatctaattg ttgcaaatat cattgcagat
     5101 gtgattttaa ttttagaaaa agatattaaa aaccatttag aagataatgc tatacttatt
     5161 ttgtcaggaa ttttagataa atattcaaca agaattaaag aaaaatttca agatttggaa
     5221 ctcattgatg aaatgcaaat caatgagtgg tgtagttttg tatataaaaa taataaaaaa
     5281 ggataagtaa tgaataataa tacccaaaat aataagggta atccgcaggg taataatttt
     5341 tttaacaaaa atcccatttt tatttttgcg atttttgcaa ttataatgat aattattttt
     5401 aagggatttt ttgatggcaa tggttctttt ggcggggcat tgaatggcaa tgaagtaaat
     5461 aaaaatgtcc cttattctga gttaaaaaag cttattgaaa gtggacaaat caatcaagtt
     5521 agtataggac aaacaacaat caaagcgatt tcaagctctc acaatactgt ttatacagca
     5581 aaaaaagtta atgatcctga gcttgtgagt ttactagata gtaaaaatat cgcttatggt
     5641 gcgtattctg aaacaaattg gtttacggat atactttttt catgggtttt gccagtattt
     5701 attttctttg gtatttggat gtttttggca agtcgtatgc aaaaaaatat gggaagttct
     5761 atattgggta taggaagttc taagaagctt gtaaattcag aaaaacctaa agtaaaattt
     5821 agcgatgtag ctggtgttga agaagctaaa gaagaagtaa aagaaattgt agatttttta
     5881 aagtatcctg aaagatatat taaattggga gctaaaattc caaaagggct tttacttgtt
     5941 gggcctccag gtacaggaaa aactttgctt gcaaaagcag ttgcaggtga agctgatgtg
     6001 ccgtttttta gtgtttcagg ttcgtctttt atagaaatgt ttgtgggtgt aggtgcttct
     6061 cgtgtgagag atttgtttga aaatgcaaaa aaagaagctc ctgctattgt ttttatagat
     6121 gaaatagatg ctattggtaa aagtcgtgca gcaagtggca tgatgggtgg aaacgatgaa
     6181 agagagcaaa ctttaaatca gcttttggct gaaatggatg gctttgggac agaaagttcc
     6241 ccagtcattg ttttagcagc aacaaatcgc ccagaagttt tagatgcagc gcttttaaga
     6301 ccaggaaggt ttgatagaca agttttagtt gataaacctg attttaaagg taggtgtgat
     6361 attttaaaag tgcacatgaa agatgtcaaa atatctccaa aagttaaagt agaagatata
     6421 gcacgcttaa ccgcagggct tgcaggagct gatcttgcaa atattattaa tgaagcggca
     6481 cttttagcag gtagggattc taaaaaatat gtagaacaaa atgatttagt tgaagctgtt
     6541 gaaagagcta tagcaggact tgagaagaaa tcacgtcgta ttaatgaaaa agaaaagaaa
     6601 attgttactt atcatgaatg cggtcatgcc ttgattgctg aaactaccaa aggtgcaaaa
     6661 cgtgtaagta aggtttctgt gattccacgt ggtcttgcgg ctttaggtta tactttaaac
     6721 acccctgagg aaaataaatt tttaatgcaa aaacatgaac ttattgccga agtagatgtg
     6781 cttttgggtg gtcgtgcggc tgaagaagtg ttcataggtg aaatttcaac gggtgcaagt
     6841 aatgatttgg aaagagcaac tgatatcata aaagctatga tttctatgta tggtatgagt
     6901 gaaattgcag gacttatggt gcttgaaaaa caaagaaata ctttcttaag tggtgggcaa
     6961 actataaaag actattctga aaagatggca gaatctttag atgattatgt aaagaaaacc
     7021 ttagatgaac gctataaaga tgttaaagat actttaaata cttataaagg agcgattgag
     7081 actatggttg cagcccttta tgaagaagaa actattgaag gtaataaagt gcgtgagatt
     7141 attaaagagt ttgaggatca aaatagtcta ccaactcgtt tacaagaact cgaagaagtt
     7201 aaaactgaag ttaaagtaga agaatgaaag attttattgc aaaagatgga tatttaagtc
     7261 ttattatttt aagcttggtt tttattttta tgtggatttt ttactctttt tccatcttgc
     7321 tattagcatt aattgtaatt tgtatttttc tttttagaac acctaaaaga gaacttgttt
     7381 gtagtgatga aaaagctatt tttgcaccta tagatggtag ggttactaaa atagaaaata
     7441 ttcatcataa agatttgggt gaatgtgttg aaattactat taaaaatgct ctttatgatg
     7501 ctgggaattt taatacacct tttgcaatgt ctataataga tattcgttta cgacatgggc
     7561 tttttttgtg cagtgaatta aaatctgcaa aaatgatgaa tgaaagagct tttattttgg
     7621 caaaagttaa agagaataaa acgatagcct tgcgaatcta tgcaggttct tttgatagaa
     7681 aattaaagct cgataatatt tctcatgatt taaaagcagg agatagaatg ggttttttaa
     7741 tcaatggctc tataagttta cttttaccaa aagatactag aattcacata ggcttaaatg
     7801 atgaaattaa agcaggctca ttgctaggct attttgcgta aggaaaaata atgaataaca
     7861 gaccgcaact aatttatatt ttacccaatc tttttacagc tgcttcagct tttttagggg
     7921 ttatttctat tatagcttca atacatggaa attattatac agctttgatt tatattattt
     7981 tatctttgat ttgcgatggg cttgatggcc gcgttgcaag acttacaaat tctacttcaa
     8041 aatttggagt agaatttgat tctttagctg atctagtagc ttttggagtt gctccagcgg
     8101 ttctttttta tatggctata ggttatgatt ttggaaagct tggatctttg attacagctt
     8161 tttttgtggt ttttggagct attcgtttgg cgagatttaa tgttaccaca ggcacttatg
     8221 aaccctccgt ttttataggt cttcctatac ctactgcagc agttgtgagt gctatatgga
     8281 cttatgcatt tatcagttat gattttttaa agccttatgg tgtagttttt ttggtgcttc
     8341 aagcaatttt agggctttta atggtaagta atatacgcta tcctagcttt aaaaagcttg
     8401 attttaatcg ttctagtgtt ttaaaagttt tgattatttt aattataata ttttcatttt
     8461 tatatcttta ccctcttgaa agtttagtaa ttttagcaag cttgtatgtg ctttatggaa
     8521 ttattcgagt tttatatact attatcgttt caaaatttaa gacaagaaat caagagtaaa
     8581 atttttcaat gacttcgcat tcttcttgag tgaagccagc tttgattctt gcttgaatgt
     8641 taagtttttt tcctgcaaga gagaattgtt taaatgtttt gcaaagctcg ataaaattat
     8701 acttgttttg gtttgcaaat ttccaccaag tatctccttt tttaacgtgt tttatttcat
     8761 cattaagtat aatttcaaga tattccatta aaagattttt aatggaatga ttggaacttt
     8821 gaagtttttg aacaacaaag gggttggcat caagcccttt agcttctaaa cctctatgaa
     8881 ctattcccat tctaaagctt aaagagtctt ttgtagcttc tagagcagat tctaaattat
     8941 catgcactgg aaaatctcca tatttgtaac caagttcttc aagcgctgaa tttaaaagtt
     9001 tgaaatgttt aatttcctca tctgccacct ccagccaatc gtaataaaat tgcaaaggta
     9061 gatttttaaa gcgataactc gcatctaaag ccaggttaat tgcattaaat tctatatgag
     9121 cgactgaatg aattatttta gcaagcgcat gagttgaatt gagaaattta ggccttctta
     9181 tacgcgtagg atgaaacaag gtaatttgtt gcgatgtatt ttttttgaaa atgctttgat
     9241 gctcgtgatt aaaaataaat ttgtggcttt taaagtcttc ataaaaattt tgaaaagagt
     9301 gaaattttat agttatattt ttttcatata aaatatcttg aagttcttga aaaaattctt
     9361 tttgcattta
//
LOCUS       DAPOLW010000059         9284 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.059, whole genome shotgun sequence.
ACCESSION   DAPOLW010000059 DAPOLW010000000
VERSION     DAPOLW010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9284)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9284)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9284
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.059"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..350)
                     /gene="queF"
                     /locus_tag="ROE18_001004"
     CDS             complement(<1..350)
                     /gene="queF"
                     /locus_tag="ROE18_001004"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HDX3651186.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPDKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTV"
     gene            510..1109
                     /locus_tag="ROE18_001005"
     CDS             510..1109
                     /locus_tag="ROE18_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDX3651187.1"
                     /translation="MKKSIAIIGGSIAGLSAALFFASAKNEELDFDITVFDEGKADLK
                     AAAIYNVPFFPKGAKADEIYTHIKAQIASMLEVKYIDSKVVSISGEKGDFTVNDEQGL
                     GIKADYIIVATGANKSDIKELEDFVIPHELMPKPNKFCFKHHGRQIIKEGIYAAGLAS
                     GVTTMVACAMGSANEAACAILSDIKGAVSVYHDTPTTRV"
     gene            complement(1114..1995)
                     /gene="metA"
                     /locus_tag="ROE18_001006"
     CDS             complement(1114..1995)
                     /gene="metA"
                     /locus_tag="ROE18_001006"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HDX3651188.1"
                     /translation="MPLIIPENIPAYELLKEHAFIMGLRRAKHQDIRPQEILIVNLMP
                     KKIETENQILSLLANSPLQVNITLLATTSYVGKNTPFTHLEKFYKGLEEVKKHKFDGA
                     IVTGAPVEQMDFEKVAYWEELLEIFDFLKQNVTSSMYICWGAMAALKYFYGVDKISLD
                     KKIFGVYKHDKVSPDLLLTNLDEKVLMPHSRHSSMDEEQILALQKQGKLKILLRNKKI
                     GSALLRDEKNIFILGHLEYFKETLHQEYVRDNFIQKAKNYYDKKGNIKYNWRSNANTI
                     FANWLNYDVYQSTPFVL"
     gene            complement(2078..3349)
                     /locus_tag="ROE18_001007"
     CDS             complement(2078..3349)
                     /locus_tag="ROE18_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HDX3651189.1"
                     /translation="MNFNKETLALHGAYNFDTQRSISVPIYQNTAYNFENLDQAAARF
                     NLQELGNIYSRLSNPTSDVLGQRLANVEGGAFGIPVASGMAACFYALINLASSGDNVA
                     YSNKIYGGTQTLISHTLKNFGIEAREFDIDDLDSLEKVIDQNTKAIFFESLSNPQIAI
                     ADIEKINQIAKKHKIVSICDNTVATPFLLQPFKHGVDVIVHSLSKYVSGQGTALGGAL
                     IERKDLNDLLKNNDRYKAFNTPDPSYHGLNLNTLDLPIFSIRVIITWLRDLGASLAPQ
                     NAWLLLQGLETLAVRIEKHSQNAEKVANFLNSHPDIKGVNYPTLASNAYHNLFKKYFD
                     KNFASGLLSFEAKDYEHARRICDKTQLFLLAANLGDSKSLIIHPASTTHSQLSEEELQ
                     KAGITKATIRLSIGLENSDDLIADLKQAIES"
     gene            complement(3775..6372)
                     /gene="flgE"
                     /locus_tag="ROE18_001008"
     CDS             complement(3775..6372)
                     /gene="flgE"
                     /locus_tag="ROE18_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HDX3651190.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTNYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFID
                     PGMHIPAAKSTEVAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQ
                     FYTTSKNSVEVTEKGVDAGSLFNAKGQGLNLRDGQGIWVSYADATYSTNKVGVNAFDP
                     NLQQNQTAAFWGTANQKVNLDITLNGVRIQNADIQSIDDAIAYINTFTAPTDTRDGTG
                     VKAVKNKDGSGIDFVNDNADGTTDNMKNINLVVNANNTAGELWNAVWNNNNQTFTFNN
                     NGNGQAGTPTINKNGSSLWTATNITFTPQPPQAATNVQLTGGLNAQIITAHKYIYSSN
                     PVDIGPMYNPDGGPAFQPGANATTRPTEPGSAAYWDAVNGGLLNTNVRTFRTTEDLRE
                     LLQRDARYGVDYDGSGTFAAADINQNIKVVVTADGHFAISNANEQSTVPPNAINGVGN
                     ATITDPKNMSFNITAYSNKQGTVSTNDAFTAIFKAFDGPLVIGNQIKESEQLKLSAFS
                     AGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIIVGT
                     ARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQAT
                     DGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVT
                     ANSGAIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQM
                     LQTLIQLKQ"
     gene            complement(6576..7058)
                     /gene="ruvC"
                     /locus_tag="ROE18_001009"
     CDS             complement(6576..7058)
                     /gene="ruvC"
                     /locus_tag="ROE18_001009"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HDX3651191.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
     gene            7154..8476
                     /gene="dnaA"
                     /locus_tag="ROE18_001010"
     CDS             7154..8476
                     /gene="dnaA"
                     /locus_tag="ROE18_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HDX3651192.1"
                     /translation="MNPSQILENLKKELNENEYENYLSNLKFNEKQSKADLLVFNAPN
                     ELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQNNKSTKIDIAHIKAQSTILN
                     PSFTFESFVVGDSNKYAYGACKAITHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD
                     HIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP
                     QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKILVKSQS"
     gene            8636..>9284
                     /gene="dnaN"
                     /locus_tag="ROE18_001011"
     CDS             8636..>9284
                     /gene="dnaN"
                     /locus_tag="ROE18_001011"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HDX3651193.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     RASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVILETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDKINFVGTDTKRLAIYTLEKANNQEFSFSIPKKAIMEMQKLFYEKIEIFYDQN"
BASE COUNT         3203 a         1589 c         1420 g         3072 t
ORIGIN      
        1 atcaccgtat gtacatttcc acgcgggtta aaatccccta ctactttaat ccattttggc
       61 ttgagtttgt cttttagagt attataaatt tcattgatac ttgcttcatg tgaaacattt
      121 ctatacataa aagtattgat ataaagtttt atcgctttaa gctcaaccac aaatttatca
      181 ggcatatact caagataaat cgttgcaaaa tcaggataac ctgaacgcgg acaacaacac
      241 ataaattcag gcaaggtgat tttaatgata tagtcatttt tagcatcatt tggccaaatt
      301 tccatatttt ctacatcaaa ttctttaatt tctttttcac cataacgcat gagctttcct
      361 tattgaaaat ttttagaaaa ttatataaaa aattactttt agagcaattg aaaaataaac
      421 atttttagca aattgcataa aaaagacaaa tattatatta aataaagctt tttatactag
      481 aataaggcaa atctttcaaa aggaaaaaaa tgaaaaaatc aattgcaatt ataggcggta
      541 gcatcgcagg acttagcgcg gctttatttt tcgcttcagc taaaaatgaa gaacttgact
      601 ttgatatcac tgtttttgat gagggtaaag cagatttaaa agcagcagca atttacaatg
      661 ttcctttttt cccaaaaggt gcaaaagcag atgaaattta cactcacata aaagcacaaa
      721 ttgcttctat gctcgaagta aaatacatcg attcaaaagt agtaagcata agcggagaaa
      781 aaggagattt tactgttaat gatgagcaag gcttgggtat aaaagcagat tatatcatcg
      841 tagcaacagg ggcaaacaaa agcgatatca aagaacttga agattttgta ataccgcatg
      901 agcttatgcc aaaaccaaac aaattttgct tcaaacatca cgggagacag attatcaaag
      961 aaggaattta cgcagcagga cttgcttcag gtgttacgac tatggtagct tgcgcgatgg
     1021 gaagtgccaa tgaagcagct tgcgcgattt taagcgatat caaaggtgca gtaagcgtat
     1081 atcacgatac acctactaca agagtttaaa tcatcaaagc acaaaaggtg tgctttgata
     1141 cacatcataa ttgagccaat ttgcaaaaat ggtatttgca tttgaacgcc aattgtattt
     1201 tatattgccc tttttatcat aataattttt agctttttgt atgaaattat ctcttacata
     1261 ttcttgatgt aaagtctctt taaaatattc caaatgccct aaaataaaaa tattcttttc
     1321 atctcttaat aaagccgaac cgattttttt atttctaagc aaaattttta atttcccttg
     1381 tttttgtagt gctaaaattt gctcttcatc catgctagaa tgtcttgaat gaggcattaa
     1441 aaccttttca tctaaatttg ttaaaagcag atcaggcgaa actttatcat gcttatagac
     1501 tccaaaaatt ttcttatcta aagagatttt atccacacca taaaagtatt ttaaagcagc
     1561 catggcaccc caacaaatat acatagaact tgttacattt tgctttaaaa aatcaaaaat
     1621 ttctagcaat tcttcccagt aagcaacctt ttcaaaatcc atttgttcca caggagctcc
     1681 cgtaacgata gcaccgtcaa atttatgttt tttaacctct tcaagaccct tgtaaaattt
     1741 ttccaaatga gtaaaaggag tatttttacc cacatagcta gtcgtggcta aaagtgtgat
     1801 atttacttgc aaaggagaat ttgcaagtaa gcttagaatt tgattttctg tttcaatttt
     1861 ttttggcata agattgacaa tcaaaatttc ttgcggcctg atatcttgat gctttgctct
     1921 ccttaatccc atgataaaag catgctcttt taaaagctca taagcgggta tattttctgg
     1981 aataatcagt ggcatttttt ctcctttatt taataaacct tatttatgat aaagcatggt
     2041 ggaattttta tctcattcac tcaatgcaaa cacactttta actttctata gcttgtttta
     2101 aatccgctat caaatcatcg ctattttcaa gtcctatgct taagcgtata gtagctttcg
     2161 taatgcctgc tttttggagt tcttcttcgc ttagttgcga atgagtagta gaagcaggat
     2221 ggatgatcaa agacttgcta tcacccaaat ttgcagcaag taagaaaagt tgagttttat
     2281 cacaaattct tctagcatgc tcataatctt tagcttcaaa gcttaaaagc ccgctagcaa
     2341 aatttttatc aaaatatttt ttaaataaat tatgataagc attacttgct aaagtaggat
     2401 aatttacgcc cttgatatca ggatgagaat ttaaaaaatt cgcaactttt tcagcatttt
     2461 gactgtgttt ttctatacgc actgccaagg tttcaagtcc ttgtaaaagt aaccaagcat
     2521 tttgaggtgc taagctagct cctagatctc taagccaagt gatgatgact ctaatactaa
     2581 aaatcggcaa atcaagtgta tttaaattca gtccatgata acttggatca ggagtgttaa
     2641 aagctttata tctatcgtta tttttaagca agtcgtttaa atcttttctt tctataagtg
     2701 ctccacccaa agcagtgcct tgaccgctta catatttact taaactatgc acgattacat
     2761 ccacgccatg tttaaaaggt tggagtaaga aaggagtagc aacggtatta tcacaaatgc
     2821 taacgatttt atgttttttt gctatttggt ttattttttc tatatcagct atggcaattt
     2881 gaggatttga aagactttcg aaaaaaatcg cttttgtgtt ttgatctata actttttcca
     2941 agctatctaa atcatcgata tcaaattccc tagcttctat gccaaaattt ttaagtgtgt
     3001 gagaaattaa agtttgagtc ccaccataaa ttttgttcga atacgcgaca ttatctcccg
     3061 aacttgctaa attgataaga gcataaaaac aagctgccat accgctagca acaggaattc
     3121 caaaagcccc tccttcgaca ttagcaagtc tttgtcctaa aacatcgctt gtaggattgc
     3181 taagtcttga gtaaatattg ccaagttctt gaagattaaa ccttgctgca gcttgatcca
     3241 aattttcaaa attatacgca gtgttttgat atataggcac actaatactt ctttgagtat
     3301 caaaattata agctccgtgt aatgctaaag tttctttatt gaaattcatt ttttatcctt
     3361 attgtatcaa tgaaaaaatg ttaaaaagct ttttatcggc tttaaactag gctatttgaa
     3421 aatgtaaatt tatagaatat gagtatatac gagtagatta agcgtgccaa gcacgcatac
     3481 agaaagaaga aagcattaag ttaaaactaa tataagacat tttttctcct ttctaaaaaa
     3541 ttattgatta ttctatcttt aaaaaataaa attaaaatta aattttaaaa aatttatatc
     3601 acattgctga aaattttatt gcaacccacc cctagcaaga gtgagttagc aataaattga
     3661 aggcagttca agcctaagcc tagtattaca agactaccaa gataggcttg taaagcaagg
     3721 cttgctccct taaagggagc aaaaaacaat attttataga atactaagct taaattattg
     3781 tttaagctgg attagagttt ggagcatttg atcactcgtt gaaatggttt ttgagtttgc
     3841 ttgataacct ctttgaatga taataagctc tgttaaagaa cgacttaaat ccacatttga
     3901 catttcaaga gctgaggttt tcatctcacc acgacctcct gttcctgctt cacctactac
     3961 tatagcccca ctatttgcag taactttaaa aagatttcca ccaatttcct caagacctga
     4021 gttatttgcc actgaagcca ttgcgatttt tgctacagca aaggttttgc cattagtaaa
     4081 ttcacctaag atattacctt tatcatccac acggatagca tcaggtttta agttacctga
     4141 agtataacca tcagttgcct gtcctgttag agttgaagca gaatttgagc ttacaaggcc
     4201 gtcattgctt ccacttgttc caaaggaaag tttgatttgt tgatttggtg cggcaccatt
     4261 gtttggtgag aaatttatcg ttcttggtgt ataactagct aaagagccgt cattgttaaa
     4321 tctagctgtt cctacgatga tattgtttgg tccttcgcct gtagtgttaa tctctgcagg
     4381 ttcaggtaca cggatgatca tttgccattc attaccccca tcttgagtgg tactttgctt
     4441 aacaaactgc acttctaaag tgtgttttga acctaaagaa tcataaattt caagccccgc
     4501 cgaaaaagca gaaagcttaa gttgttcgct ttctttgatc tgatttccta taaccaaagg
     4561 accatcgaaa gctttaaaaa tagcagtgaa agcatcatta gtacttacag ttccttgttt
     4621 gttactataa gctgttatat taaaactcat attttttgga tctgttatag tggcatttcc
     4681 tacaccatta atagcatttg gtggaacagt tgattgttca ttagcattgg aaatagcaaa
     4741 atgtccatct gccgttacta ctacttttat attttgatta atatcagctg cagcaaaagt
     4801 tccacttcca tcataatcaa ccccatatct agcatccctt tgtaaaagtt ctcttaaatc
     4861 ttctgtggtt ctaaaagttc ttacattagt atttaaaagt ccaccattaa cagcatccca
     4921 ataagctgct gaacctggtt cagttggtct tgtagttgca ttagcaccag gctggaatgc
     4981 tggtccaccg tcaggattat acataggacc tatatccaca gggtttgaac tataaatata
     5041 tttatgtgct gttattattt gtgcatttag tccaccagta agctgaacat tcgtagctgc
     5101 ttgaggaggt tgtggtgtaa atgtaatatt tgtagctgtc cacaaagaag aaccattttt
     5161 attaatagtc ggtgttccag cctgtccatt accattatta ttaaatgtaa atgtttgatt
     5221 gttgttattc catacagcat tccaaagctc acctgctgta ttgttagcat taaccacaag
     5281 attgatattt ttcatattat ctgtagtacc atcggcatta tcattgacaa aatcaattcc
     5341 actaccatcc ttatttttaa ccgcttttac acctgttcca tcccttgtat ccgttggtgc
     5401 agtaaaggta ttgatataag caatagcatc atcaatactt tgaatatcag cattttgaat
     5461 tctaacccca tttaaagtta tatctaaatt cactttttga ttagctgttc cccaaaaagc
     5521 agcagtttga ttttgctgta aatttggatc aaaagcattt actcctactt tattggtaga
     5581 atatgttgca tctgcataag atacccaaat tccttgtcca tctctaagat taagtccttg
     5641 tcctttcgcg ttaaaaagtg atcccgcatc cacacccttt tctgtcactt ctacagaatt
     5701 cttagaagtc gtataaaact gagtagttcc tgtatcattt tcatcttctg ctctttgggt
     5761 tttagtattc catccatgaa cagaatcaag tgcataaaga tttctacttg aagttcctat
     5821 atttaaacca ctatttaaat tcgctttgat agcaacttca gtagattttg ctgcagggat
     5881 atgcatacct ggatcgataa aaatattttg tggagttctt gaactatcta tagtttgatc
     5941 atcccagttg atattccacc cttggacaac aaaacctgca ttattaacaa aatttccata
     6001 agcatctagt ttaaaatccc cgctccttgt aagatagttt gtaagaccac catcatcgct
     6061 taccataaaa aaaccatcgc catttatagc aacgtcagtg tttttatctg tggtttgaac
     6121 tgaaccttga gaatgaattc tagttgtaga acttactgaa acgccaagac cgatttgaag
     6181 tggattagat ccgcctcttc catcagttgg agctgtagcg attttcacag tttggctaaa
     6241 catagtccca aaatctgcac gagaatattt aaaaccagtg gtattaacat ttgaaatgtt
     6301 attaccttca acatccatcg caacttgatg tgcttgtagt ccgcttacgc cagaccaaag
     6361 tgatctcatc atcttaaatc ctttataaaa tattgcttta aaaaatttaa cgctttggct
     6421 ttaaaaaact tttgcgttta tgtgaagttt acaagcaagt tctgttccaa cttttgaaat
     6481 tttttatgaa ttttttaaaa atttatagaa aaaatttaaa ggtattttgg gagtttatga
     6541 agctttgggc ttttgtgtaa taaaaattac caaaatcaca ccctaactct taaatttgcc
     6601 gcatgagtta aagccactgc gatagcatct gtgatgtcta aaggcttgat atctttacta
     6661 agtcctaaaa gcctttttac cataaaagca acttgttctt tagttgcttt ggcttttcct
     6721 gtaacggctt tttttacttg taagggagtg tattctgcaa aatctccatg aatttgaaga
     6781 atttttaaag atagggctcc gcgaaattgt gcgagtttta aaacggtttt tggattgtaa
     6841 gcaaaaaaga tatcttctat agccacctca tcaaaagaat gatttttaaa aatcaagtcc
     6901 aaaccctcac aaagctctgt gatttgatac tgtaaggtac ttggctttat ctttataagt
     6961 cctgcttcta tgagaatgtt ttttcctttg ttggcttcta tgatagcata accgcaattt
     7021 cttgaacctg gatctatacc taaaattttc aaattcatac cttttgaaaa ataaaataca
     7081 aaagcggatt ttaacctttt tttatgaaat ttaagataaa atttatacat tatgcaaaat
     7141 ttaaagagag attatgaatc caagccaaat acttgaaaat ttaaaaaaag aattaaacga
     7201 aaacgaatac gaaaactatc tatcaaattt aaaattcaac gaaaaacaaa gcaaagcaga
     7261 tcttttggtt tttaacgctc caaatgaact catggctaaa ttcatacaaa caaaatacgg
     7321 caaaaaaatc gcgcattttt atgaagtgca aagcggaaat aaagccatca taaatataca
     7381 agcacaaagt gctaaacaaa ataacaaaag cacaaaaatc gacatagctc atataaaagc
     7441 acaaagcacg attttaaatc cttcttttac ttttgaaagt tttgttgtag gggattctaa
     7501 caaatacgct tatggagcat gtaaagctat aacacataaa gataagcttg gaaaacttta
     7561 taatcctatc tttgtttatg ggcctacagg acttggaaaa acacatttac ttcaagcagt
     7621 tggaaatgca agcttagaaa tgggaaaaaa agttatttat gctacgagtg aaaattttat
     7681 caatgatttt acttcaaatt taaaaaatgg ctctttagat aaatttcatg aaaagtatag
     7741 aaactgcgat gttttactta tagatgatgt acagttttta ggaaaaaccg ataaaattca
     7801 agaagaattt ttctttatat ttaatgaaat caaaaataac gatggacaaa tcatcatgac
     7861 ttcagacaat ccacccaaca tgctaaaagg tataaccgaa cgcttaaaaa gtcgttttgc
     7921 acatgggatc atagctgata taactccacc tcaactagat acaaaaatag ccatcataag
     7981 aaaaaaatgt gaatttaacg atatcaatct ttctaatgat attataaact atatcgctac
     8041 ttctttaggg gataatataa gagaaatcga aggtatcatc ataagtttaa atgcttatgc
     8101 aaccatacta ggacaagaaa tcacactcga acttgccaaa agtgtgatga aagatcatat
     8161 caaagaaaag aaagaaaata tcactataga tgacatttta tctttggtat gtaaagaatt
     8221 taacatcaaa ccaagcgatg tgaaatccaa taaaaaaact caaaatatag tcacagcaag
     8281 acgcattgtg atttacctag ctagggcact tacggctttg actatgccac aacttgcgaa
     8341 ttattttgaa atgaaagatc atacagctat ttcacataat gttaaaaaaa tcacagaaat
     8401 gatagaaaat gatggttctt taaaagcaaa aatcgaagaa cttaaaaata aaattcttgt
     8461 taaaagtcaa agttaagtga aaggatgtga aaaataaatt ctagagtgtg aaaaaaagaa
     8521 attaagcaaa gtatgataaa atacaaattt gattattttg ctttgaagaa tttcacaatt
     8581 tcaacaagct tattattaca acgaatttaa aattaaaata aaccaaggag aaaaaatgaa
     8641 gttaagtatc aataaaaata ctttagaatc tgcagtgatt ttatgtaatg cttatgtaga
     8701 aaaaaaagac tcaagcacta ttacttctca tctttttttt catgctgatg aagataaact
     8761 tcttattaga gctagtgatt atgaaatagg tatcaactat aagataaaaa aaatccgcgt
     8821 agaatcaagt ggttttgcta ctgcaaacgc aaaaagtatt gcagatgtta ttaaaagctt
     8881 aaataatgaa gaagttattt tagaaaccat tgataatttc ttatttataa gacaaaaaag
     8941 cacaaaatac aaacttccta tgtttaatca tgaagatttt ccaaattttc caaatacaga
     9001 aggaaaaaac caatttgaca ttgattcaag tgatttaagc cgttctctta aaaagatatt
     9061 accaagtatt gatacaaaca acccaaaata ctccttaaat ggtgcatttt tagatataaa
     9121 aacagataaa attaacttcg taggaactga tacaaaacga cttgcaatct atactttaga
     9181 aaaagcaaat aatcaagaat ttagttttag tatccctaaa aaagctatta tggaaatgca
     9241 aaaacttttc tatgaaaaaa tagaaatttt ttatgatcaa aata
//
LOCUS       DAPOLW010000060         9283 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.060, whole genome shotgun sequence.
ACCESSION   DAPOLW010000060 DAPOLW010000000
VERSION     DAPOLW010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9283)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9283)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9283
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.060"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..1104
                     /locus_tag="ROE18_001012"
     CDS             <1..1104
                     /locus_tag="ROE18_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HDX3651194.1"
                     /translation="THQYIKYNKKNKKYWVLKLQTENFTFYTTSFKDLNLSKNQFLSL
                     RIITHNINFKDYLSKSFYAPSYDFEKLKEKEYNPIISYFLNQHTNEKIKEFYGALFFA
                     LPISLELRNDVNYYGIAHLIAISGYHIGLLFSLIFFILAPIYSFFQKRYFPYRNLRLD
                     LSILIFALLLAYACLIGFVPSFVRSLIMAFWVFYLLCKNIKIINFVTLFCSILLCISL
                     YPRLLFSIGFLFSILGVFYIFLYMHHFANKFNNLINIILLNIWTFFAMVLPVLYFFPL
                     ISYQQILGIILSGIFVIFYPLVLFLHLINYGDLLNFILDEFFKFKIYGTNIHIPFWIF
                     ISYLIASLISVRFKYLAFLCIFANFIPFIMIVI"
     gene            complement(1048..1854)
                     /locus_tag="ROE18_001013"
     CDS             complement(1048..1854)
                     /locus_tag="ROE18_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HDX3651195.1"
                     /translation="MKNFFTILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFVINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGTIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFGLKLYYFLNHNHNEGNKIRKNTKKS"
     gene            complement(1858..3240)
                     /locus_tag="ROE18_001014"
     CDS             complement(1858..3240)
                     /locus_tag="ROE18_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDX3651196.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIARILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVKEAIDEDLRNLEYYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            complement(3243..3968)
                     /locus_tag="ROE18_001015"
     CDS             complement(3243..3968)
                     /locus_tag="ROE18_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HDX3651197.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSVFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDFR
                     QFCDDNAVGILVVALENHAEVVDCQDFNKLYEVPISKPTSVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            4090..5250
                     /locus_tag="ROE18_001016"
     CDS             4090..5250
                     /locus_tag="ROE18_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDX3651198.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDGQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKAKENFKHIIAGYEQVVKEALASNQPNPPKEEDFENYIEF"
     gene            complement(5247..5450)
                     /locus_tag="ROE18_001017"
     CDS             complement(5247..5450)
                     /locus_tag="ROE18_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651199.1"
                     /translation="MYERKDLRVLKIIQKAREFGDGDLLNEALVKQLIDADFCEINEK
                     EKEELATLLNSLINAKDKALLSN"
     gene            complement(5452..6132)
                     /locus_tag="ROE18_001018"
     CDS             complement(5452..6132)
                     /locus_tag="ROE18_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="laccase domain-containing protein"
                     /protein_id="HDX3651200.1"
                     /translation="MGRSRKNFLSLLENDKVVIFCAFDKDYNVFRAKVYSENLFYHLG
                     FKDIKKCVFMDQIHSHKVIIYEKNLKNLSCDGLISKEKNIALCVLSADCLPLILYHES
                     GIIAALHSGRKGSFENILKECVDQITMQNSHLDKNKFHLFILPGICAKNYEIDGEILE
                     FAKKEFKEFVQDDKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTPKRF
                     VSVVYLKD"
     gene            complement(6096..6707)
                     /locus_tag="ROE18_001019"
     CDS             complement(6096..6707)
                     /locus_tag="ROE18_001019"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HDX3651201.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLKAKYRPNLGDSIAVNGACLSVT
                     KLYEGGFEVELSRESRTHIAIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGTLEKI
                     QKDENGVDFYISLPKEAMKFMAEKGSIAVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            complement(6716..9256)
                     /locus_tag="ROE18_001020"
     CDS             complement(6716..9256)
                     /locus_tag="ROE18_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651202.1"
                     /translation="MKKIFYGVIAFVVVLLIAIYTILFTSFGNNIVANIAQKKIKESA
                     GLDVNITHFNLRFSSLELQANIANMADFNLKGALSPFKLGFDLDYLISLNQNYAKNLG
                     LNLNQNLSFGGKIQGKASDFTLDGKGYLLGSNVLLNARMYNYSPIALNLDAQNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKLDTSYINYEAIKKDFSLDLPLNS
                     NPKAEILANIKEDKIYAVSKIYNDYLNLQTQKTLYDISKNALSTDFNLSIPSLVKLEK
                     LTKTRLNGSLDVIGQTSVVNNALSSLNAQVIGLGGEVKASLKNNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKINTNELKKIAKIELPNAIFS
                     FDAKANAKNSNISYNALLASNLLNIKKLQGTYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLTAKAHIIGTQVQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     TGMPNYASGIVNAKVNLDNIDFNNLNGKANLEAKGILNAATLSKILNKNFPNNTSYDL
                     NTKINFKNNIAQFDSVLNSSLADLTKLQGSFDISKMLLNSDFNLKINDFSKLGFLLDR
                     KLKGKAEFNGKVGFDKSLNFVVNSPNLFEGRLQSTLKDNLLLADLNGVDLSSLAQGLD
                     FMDVYQGKADVKANYNLLSEEGEVNLDMKEGKLKPNLITNALKILTLKDITNDVYRTA
                     NAKALIKKENIKLDLNMQADRSYILVQSGALNSKSGALNLPFDIKLDRANFKGSITGT
                     TENPKVNLNAGSVLNSIKNVVGGGVSDGAKSTGDKVDKAVNKLLNKIF"
BASE COUNT         3243 a         1576 c         1131 g         3333 t
ORIGIN      
        1 acgcaccaat atataaaata taataaaaaa aataaaaaat actgggtttt aaagttacaa
       61 actgaaaact tcacttttta tactacaagt tttaaggatt taaatttaag caagaatcaa
      121 tttttaagcc ttagaattat cacccataat attaacttta aagactatct gagtaaaagt
      181 ttttacgcac cttcttatga ttttgaaaaa ttaaaagaaa aagaatacaa tcccattata
      241 tcttacttct taaatcaaca tacaaatgaa aagattaaag aattttatgg tgctttattt
      301 tttgcactgc ccatatcttt agagcttaga aacgatgtaa attactacgg tatagcacac
      361 cttatagcaa ttagcggtta tcacataggc ttacttttta gtttaatttt ctttatttta
      421 gctccaattt atagtttttt ccaaaaaaga tattttcctt atagaaattt acgtttagat
      481 ttaagtattt taatttttgc actactttta gcttatgctt gtttaatagg atttgtccct
      541 tcttttgtgc gctccttgat tatggctttt tgggtttttt atctattgtg taaaaatata
      601 aaaatcatta atttcgttac gcttttttgt agtattttat tgtgcatttc tctttaccct
      661 agacttttat ttagtattgg atttttattt tctattttag gtgtttttta tattttttta
      721 tatatgcatc attttgcaaa taaatttaat aatcttataa atattatttt gcttaatatt
      781 tggacttttt ttgctatggt tttacctgtg ctttattttt ttccacttat aagctaccaa
      841 caaattttag gtattatttt gagtggaatt tttgtaatat tttatccttt agtattattt
      901 ttgcatctta taaactatgg agatttgctc aattttatct tagatgaatt ttttaaattt
      961 aaaatttatg gaactaatat ccatatccca ttttggattt ttataagtta tcttattgct
     1021 tctttaatct ctgtgcgatt taaatatcta gcttttcttt gtatttttgc gaattttatt
     1081 cccttcatta tgattgtgat ttagaaaata atagagttta agcccaaaaa gataaataat
     1141 ccaagaaata taaatccaaa taaaaaagaa taaaatagta gaaaaagatc cataaacgct
     1201 agcgtatgtt ttattatata ccacgtaata tacaaataaa ttttttccta tataccaaat
     1261 agtacccgct ccaaaagata ctaaagctaa acttttaaga gttcccttat gaacagaact
     1321 tgaataagat ataaaaaata aaccccaaat aattacaaag ggtaaaattt caaaaaaatt
     1381 aaaccctatt ttataatcat ctaaagtttg ttggataaaa cctgaaatat aaaaactaag
     1441 cccaagcccc aaaggaacaa gagttaaaag agtccaataa gaactaatac tttgccaaag
     1501 tcctttaggt tcatttttag taatgcgatt gattacaaaa tcatagcctg aaaaaaaagc
     1561 taaagaagta aatgccatag caataagacc tacaataccc aaatttacac tattttttaa
     1621 aaaagtatcg atgtaggtag caacaacatc ttgttgcgtt ggtattaaaa aagcaaaaat
     1681 tacttgcttt gctttttcat aataagcttt aaaactggaa atttgcgtaa aaacagaaaa
     1741 acatacaaat aaaataggta ttaaagataa tacagtataa aaactaagcg ctgctgcata
     1801 atttaaaatt tccttatcac gcaaatttag taaaatagta aaaaaatttt tcaccttcta
     1861 aagtcccatt ttaaaaggat ttagtatatt atttggatca aaagcttttt taatatttct
     1921 cattaaattc atttcggctt cagaaaaagc taaattcata aaaggtgcct tagagagtcc
     1981 gataccatgc tctccgctta aagttcctcc aagtttcact gttaatttaa aaatctcttc
     2041 cacagcttca tagccttttt tcacctgctc tttatcattt ttatcaggaa ccataacatt
     2101 agtatgcaca tttccatccc ctgtatgtcc aaagcaagga attttaaaac catatttttt
     2161 agaaatctca tctatacctt caagcaaagt aggtagttta gaacgcggaa ctgtaatatc
     2221 ttcattaagt tttaaagttc catacatggc aatgctttga gaacaatttc ttctagcaaa
     2281 ccaaatatct gcggtttctt gttcatcttt tgctatttta aattcgctag cgccagcttc
     2341 taaaaaataa tattctaaat ttcttaaatc ctcatcaata gcctctttaa cattaccatc
     2401 cacatcagca atcaaaatag ctccagcttc tataggcaaa cctttattaa atttgctctc
     2461 aaccgctcta atgctaagat tgtctaaaaa ttccatagat acaggactta caccgctagc
     2521 aagacttttg taaaccgcat tcatagcact ttttacactt ggaaaaatag caaaagcagt
     2581 ttttttaaat ttaggcaaag gtattaattt taaagtaagc tcacttaaaa ctgccaaaga
     2641 accttcacta gcgattaaaa ttcctgccaa attataacct gctacatctt taatagtgcg
     2701 tttccctgca cgaatgattt ctccgctagg caaaacagcc cttaaagcca tcacataatc
     2761 ttttgtaatg ccatattttg cagctctcat tcccccagca ttttcgctta cattaccccc
     2821 taagcttgaa tactccatgc tagcagggtc aggtggataa aaaagtccgt atttggctac
     2881 ttctttttgt aaatgtatat taataacccc aggttgcaca acagccacta aattttcaag
     2941 atcaatttct aaaattttat tcatatgctt ttcaaaagca agcaccaccc cgccattaac
     3001 agctaaagct cctcctgtaa aaccagatcc tgagcctcgc ggtatgacta tgatattatt
     3061 ttcattacaa aattttaaaa ttcgagcaat atcttcttca tttcttggaa aaagaacccc
     3121 atcgggtaaa taatgttttt ttgtcgcatc atagctataa gctcttttgt gaatttcatc
     3181 aaaataagcg ttttcttctc ctaaaaatcg tttaaaatat tgttcaaatt cttttttcat
     3241 gtttattgca ccttaggaag attaatcaaa gcatcataat acctataata atttcctatt
     3301 tcttgagagt taaaatcaaa aaaattactt ttatatccac ctatacgaga ataaaaagga
     3361 acctgaacgc tagttggctt gcttataggc acttcataaa gcttattaaa atcttgacaa
     3421 tccacaactt ctgcatgatt ttccaaagcc acaaccaaaa tgccgaccgc attatcatca
     3481 caaaattgcc taaaatctga acgcttagga gaaagagtag ccgttctaat taattgtgct
     3541 ccaaaaatat caatatgggt aaaatatatc tgcggaaatt ctctaacaag ttcattataa
     3601 gtttgttcat caggagcaat taccaatcct ctatcataaa gaaaatttaa aacaacctca
     3661 tcacctactt taggtaaaac atttggtaaa ggcaaagcat cttgcttaag agctgaaaaa
     3721 acactaaatt ctaattttgc caaaccattt tttttatcta taacacttgc tctagcgatg
     3781 atactttgcg aattgctaaa atgttgcact actacgccac ttgaataaag ttttatatca
     3841 tcactatctt taatataacc ataaatatca tcaactttta caagttcact ttttataggt
     3901 tttaaatcaa atccaaccgc aaagaggcta aggtttaaag ctaaaaaaca cactatagtt
     3961 ttaaacaaat ttgctcctta aataaaaatt tatagaatta taatcctttt ttgttaagca
     4021 attgtaagaa aaataaagta aaatatagct ttcaaatttc aaaattcttt taaaaattaa
     4081 ggttatctca tgaaaaaatt attgctttta tttatttttg ttgttcaaag ctttgcagct
     4141 ttaagtgttg aagagctaac ttgggataat ggagatacct tgcttaaatt cctacaaaga
     4201 aattccatac ctatgtcgct ttattatgga cttgatagag aagatcaaga acttgcttct
     4261 gatatagcct ataaaataaa atatcaagtt ttaaaagatg aaaacaacaa catagaacaa
     4321 gttttaattc caattagtga tgatttacaa attcatatct ataaagataa agatggacaa
     4381 tacactcttg cttttactcc tgtatcttat caaaaagaag atagaatttt acatttaacc
     4441 attaaaagct ctgcttatca agatgtctat gaagaaagtg gtagcagtac tttagctcgt
     4501 gctatggttc gtgcttttcg aggaagtata aattttcgca atatccaaaa aggtgatgaa
     4561 gtaaccctat attatgaaca aaaaagacgc atgggtaaac tttggggcga tataaatata
     4621 aaaatggcaa tggtagaaat taataaaagc gctagagaag tcttttctta taatgatata
     4681 ttctatgatc gcgatggcaa agaattagaa tcttttttac ttacaaaacc tgtgaactac
     4741 actagaattt cctctccttt tacaacagca agatatcatc ctatattaaa acgctatcgc
     4801 gcccatcttg gtatagacta tgctgcacct actggaactc ctgtaaaaag tgctggcaaa
     4861 ggagtagtaa cctttatagg cacaaaaggt ggttatggaa atgtaattca aatcaagcat
     4921 gactcaggtt atatgacttt atatgctcat cttagtcgtt ttgcaaaaat taaaaacgga
     4981 caaaaggtaa atcaaggaca agtaattgca tatgttggtt caacaggtat gagcacaggt
     5041 cctcatttgc attttggagt atatttaaat aataaagcta taaatcctgc atctgttgta
     5101 aaaatcgcca aatcagaact tagtggaaaa gcaaaagaga attttaaaca tatcatagct
     5161 ggatacgagc aggttgttaa agaagcccta gcctcgaatc aacctaatcc tccaaaagaa
     5221 gaagattttg aaaactatat agaattttaa ttactcaaca acgctttatc ttttgcattg
     5281 attaaagaat ttagaagagt tgcaagctct tctttttctt tttcattaat ttcacaaaaa
     5341 tctgcatcaa tcaattgttt taccaaagct tcatttaaca aatctccatc gccaaattct
     5401 ctagcttttt gaatgatttt taacactctt aaatcttttc tttcatacat tttaatcctt
     5461 taaataaacc acactcacaa aacgcttagg cgttttatca cgacgataag aaaaaaaact
     5521 ctcatcatca aaactacaaa ttccacaatc tttaatattt tcaatgccta aattttgagc
     5581 ttgaaatttt actaaagctt ttaaatcaag tttatcatct tgaacaaatt ctttaaattc
     5641 ttttttagca aattctaaaa tttctccatc tatttcataa tttttagcac aaattccagg
     5701 caggataaaa agatgaaatt tattcttatc taaatgtgaa ttttgcatag taatttgatc
     5761 aacgcattct tttaggatat tttcaaagct tccttttcta cctgaatgca aagctgctat
     5821 aatgccgctt tcatgatata agatcaaagg cagacaatcc gcacttaaaa cacaaagagc
     5881 gatatttttt tctttactta taagcccatc acagctaaga ttttttaaat ttttttcata
     5941 aatgataact ttatgagagt gaatttgatc cataaaaaca cattttttaa tatctttaaa
     6001 acctaaatga taaaataaat tctcactata aaccttagct ctaaaaacat tataatcctt
     6061 atcaaaagca caaaaaataa cgactttatc attttctaat aaagataaga aattctttcg
     6121 acttcttccc atgataatcc tttgttttta ccttgcaatt gtgcataaat ataacgagca
     6181 agtaaatcac tttctatatt tatttttcta cctacttgat agtctttaaa aagcgtttct
     6241 ttaaaagtaa taggaataat agtaagccta ataccatttt ttaaaatttc attgatagta
     6301 agacttactc catcaacagc tatacttcct ttttctgcca taaatttcat agcttcttta
     6361 ggtaaagata tataaaaatc cactccattt tcatcttttt gaatcttttc aagtgtgccg
     6421 ataaaatcaa tatgtccttg cataagatgt ccatcaattc tatcgccata tcttaaagca
     6481 ggttctatat gaactttatc ttttaaattc tctatagcta tatgagtgcg actttcacga
     6541 gaaagctcca cttcaaaacc cccttcataa agttttgtta cacttaaaca agctccattt
     6601 acggctatgc tatcgccaag atttgggcga tattttgctt ttaagcttaa agtattgttt
     6661 tgataagatt gaactttagc aatttctctt atgagtccat taaacatttt ttaccttaaa
     6721 aaatcttatt taataattta ttcaccgctt tatcaacttt atcgcccgta cttttagcac
     6781 catcactcac accgccacct actacatttt taatagaatt taacacactt cctgcattta
     6841 aattcacttt aggattttcc gtagttcctg taatacttcc tttaaaattg gctctatcga
     6901 gtttaatatc aaaaggcaaa tttaaagctc cgcttttaga atttaaagct cctgattgta
     6961 ctaaaatata agaacgatct gcttgcatat taagatcaag tttgatattt tcttttttaa
     7021 tcaaagcttt agcattagca gtgcgataaa catcattggt aatatctttt agtgttaaaa
     7081 tttttaaagc attggtaata agatttggtt ttaatttacc ctctttcata tccaaattaa
     7141 cctctccttc ttcacttaaa agattgtaat ttgccttcac atctgcctta ccttgataaa
     7201 catccataaa atctaaacct tgagctagac tacttaaatc cactccattt aaatcagcaa
     7261 gcaaaaggtt atctttaagt gtgctttgaa gcctcccttc aaataaattt ggactattta
     7321 caacaaaatt taaactctta tcaaaaccta cctttccatt aaattctgcc ttacctttaa
     7381 gttttctatc caacaaaaag cctagttttg aaaaatcatt tatctttaga ttaaaatccg
     7441 aatttaaaag cattttgctt atatcaaaac ttccttgtag ctttgtaaga tcagctaaag
     7501 atgaatttaa aacagaatca aattgagcga tattgttttt aaaattaatt ttggtattta
     7561 aatcataact tgtattgttt ggaaaatttt tatttaaaat tttacttaaa gttgcagcat
     7621 ttaaaatacc cttagcttct aaatttgctt taccattaag attgttaaaa tcgatattat
     7681 ctaaattaac ttttgcatta acaatcccac tggcataatt tggcatacct gttataacaa
     7741 aaagtttaga taaatcaagt ttatcaatgt ttaaatcaag ttttttacca tttgaatcag
     7801 ccttgattac accatctgcc aaatttgcat ttgcatttaa attttgtact tgagtgccta
     7861 taatatgagc ttttgcagta agatctgcct taccttgtaa tttttgtcct gctatagcac
     7921 taaactgaga caagtcatca ataaaagcat ttaaatctgt atttaactca ctatttttta
     7981 aattataagt tccttgaagt tttttgatat taagcaaatt tgaagcaagt aaagcattgt
     8041 aagaaatatt actatttttt gcatttgctt tagcatcaaa actaaaaatt gcatttggaa
     8101 gttctatttt agctattttt ttaagctcat tggtgttaat ctttgcattg tttatttttg
     8161 cttcaagatc aaaattagaa aaatccaaat ctgcatttag aagtttagca tttaaatttc
     8221 cagaaaccaa agctccgtat cctgcaagag ctaataattt ttccaaactt gcttcattaa
     8281 tatctgcaaa aattttatta tttttcaaac ttgcctttac ctctccacca agtccgataa
     8341 cttgagcatt taaacttgat aaggcattat ttacaacact tgtttgacct atcacatcca
     8401 aactaccatt tagtctagtt tttgtaagtt tttcaagctt tacaagagaa ggaatactta
     8461 aattaaaatc agtacttaaa gcattcttgc taatatcata aagagttttt tgggtttgta
     8521 agttaagata atcattgtaa attttactta cagcataaat cttatcttct ttaatattgg
     8581 ccaaaatttc tgctttagga ttagaattta aaggcaagtc taaagaaaaa tcttttttta
     8641 tcgcctcata gtttatataa cttgtatcaa gttttatgat gatatttcca tcaggtttta
     8701 aattctgtgc tgaaattttt gcttgagcat ttaaaaaacc tttagcgtaa ctagggtaag
     8761 ataaaagatg aagtatttct tctatcttaa gattttgcgc atctaaattt aaagcaatag
     8821 ggctgtaatt atacattctt gcatttaaaa gtacatttga acctagtaaa taaccctttc
     8881 catctaaagt aaaatcactt gctttacctt gaatcttacc gccaaaagaa aggttttgat
     8941 ttaaatttaa acctaaattt ttagcataat tttgatttaa agaaataaga tagtcaagat
     9001 caaatccaag cttaaaagga ctcaaagctc ccttaagatt aaaatctgcc atatttgcga
     9061 tatttgcttg caattcaagg cttgaaaaac gtaaattaaa atgcgtgata tttacatcta
     9121 atcccgcact ttctttgatc tttttttgcg ctatatttgc cactatatta ttaccaaaac
     9181 ttgtgaaaag tatggtataa atagcaatca aaagcacaac aacaaaagct ataactccat
     9241 aaaaaatctt tttcattttt atcctttagt ttattttata aaa
//
LOCUS       DAPOLW010000061         9152 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.061, whole genome shotgun sequence.
ACCESSION   DAPOLW010000061 DAPOLW010000000
VERSION     DAPOLW010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9152)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9152)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9152
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.061"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            30..677
                     /locus_tag="ROE18_001021"
     CDS             30..677
                     /locus_tag="ROE18_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="desulfoferrodoxin FeS4 iron-binding
                     domain-containing protein"
                     /protein_id="HDX3651203.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTAVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVSAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            742..981
                     /locus_tag="ROE18_001022"
     CDS             742..981
                     /locus_tag="ROE18_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HDX3651204.1"
                     /translation="MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAIL
                     EYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITVE"
     gene            1014..1589
                     /locus_tag="ROE18_001023"
     CDS             1014..1589
                     /locus_tag="ROE18_001023"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HDX3651205.1"
                     /translation="MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQL
                     DGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFK
                     TENNFLYDGNTNLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL"
     gene            complement(1590..3035)
                     /locus_tag="ROE18_001024"
     CDS             complement(1590..3035)
                     /locus_tag="ROE18_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HDX3651206.1"
                     /translation="MGNARGFLDFKRMDFKKIAPKERVLNFKEFTIPLDKKEQEIQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLVYRSLWKEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGVSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAVIGS
                     GPAGLACANTLNSLGYKVSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKSGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADMAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTHVEGVEANDLKREFKEGKA
                     INVEISNSKKTYKADLVLLAMGFSGCEEAISKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
     gene            complement(3045..7535)
                     /gene="gltB"
                     /locus_tag="ROE18_001025"
     CDS             complement(3045..7535)
                     /gene="gltB"
                     /locus_tag="ROE18_001025"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HDX3651207.1"
                     /translation="MDLENILENNQSIGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFKTQELGFELPKKGDYGVAQMFLS
                     PNTDAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKLSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEVLKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIANKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKHANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     INFMYFIAEELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIKLEIIGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGQVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHITYTDSKKAKDILEKFDKKDFFKVMPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     QK"
     gene            complement(7669..8976)
                     /locus_tag="ROE18_001026"
     CDS             complement(7669..8976)
                     /locus_tag="ROE18_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HDX3651208.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALVAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSVSLNDVTNTMYFAAICMIAGLFLALFVFYRKSREYQE
                     VEIAKVDLENLEMTRKEWGVLAGLVLTLVLQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNADKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
BASE COUNT         3113 a         1737 c         1288 g         3014 t
ORIGIN      
        1 actttttgat aatcaaaaaa ggagtcaaaa tgagacaata tgaaacctat aaatgccaaa
       61 aatgtggtaa tgaagtagaa gttcaaaatg taggtggagg taagcttagt tgttgtggtg
      121 aagaaatgaa atgtatcact acagatttaa ctgcagtaaa tttgatgaaa gcttttgcgg
      181 gcgaatctat ggcgagaaac aaatacgatt tatttgctga tgtagctgaa gaagaaggtt
      241 ggcatgcggt tgctagacat tttagagaag cagctgaaaa tgaaaaatgg catgcaagag
      301 cagaatttaa agcttatcat gaaatcgttg atggaaaacc tttagaagta actacaaaaa
      361 acctagtaag tgctgcagaa ggtgaaaact atgagcacac aactatgtat ccaaattttg
      421 caaaaattgc tgaagatgaa ggtaaaaagg ctatagcaag attatttaca gctattggta
      481 aagtagaaat cgaacacgaa agagaatatc tagcacttaa aaaaatgctt gaagaagaag
      541 aattttttaa tagcgaagta gaagaattat gggtttgtga agtatgcgga catatacatc
      601 gtggcaaaaa agctccagca gcctgtcctt tatgtaaagc accaaaagag tattttaaac
      661 gcgaattttt gggttaagtt aagaaattct tatccttttt aagataatat tataattatt
      721 ttttaataaa aggataagaa aatgaaaaaa ttactatttt tattttttgc tttaacggct
      781 tttctctttg gtgctgtaaa tatcaacact gcaacgctaa aagaattaaa aagtttaaat
      841 ggtattggcg aagctaaggc taaagcgatt ttagaatacc gtaaagaagc aaattttaca
      901 agtattgatg atcttaaaaa agttaaaggc ataggtgata agctttttga aaaaatcaaa
      961 aatgatatca cagtagaata aaagggcatt tttgcccttc tttttagaaa aatttgaaaa
     1021 ctttatttga cacaaaagaa cttttaaacg aatttgatat aaatttaatc ggtattgatg
     1081 aagcaggacg cggtgcttta gcaggtccta tgatgatggc agcttgcaaa ctgaacaaac
     1141 aacttgatgg gttgtgtgat tctaaaaaac taagcgaaaa aaaacgcgaa gaactttatg
     1201 aaatcatcat caaaaattca aactatctca tacttgcttt ttcttcggaa caaatcgacg
     1261 cactaggctt aagcacttgt ttaaaaaaag gcttaaaact tataaaaaag cattttaaaa
     1321 cagaaaataa cttcttatat gatggaaaca ccaacctagg tataaacggg ataaaaacac
     1381 aaatcaaagc cgacactagc attttgcaag taagtgcagc tagcatactt gcaaaagtta
     1441 gtaaagatag ggtgatgaat ttcttagcta aagactttcc ttgttatgaa tttgaaaaaa
     1501 acaaagccta tggcacaaaa gctcataaag aatttatagc taaatttgga atttgcaaac
     1561 tccaccgaaa aagttttaaa cttttatgat tattttgcta aattttgatg caaactcaaa
     1621 gcacattcta taccatcttt tatagcccaa acaactaaag attgtccttt tctagcatct
     1681 ccacaagcaa agattttttt atgagtggtt tggaaatttt ctgtgcttat gttgtttttc
     1741 tcatctaatt tcactccaaa atttttagag atagcttctt cgcacccgct aaaacccata
     1801 gctaaaagca ctaaatccgc tttataagtt tttttagaat ttgaaatttc gacatttata
     1861 gctttgcctt ctttaaactc gcgttttaaa tcatttgctt caacaccttc tacatgagtt
     1921 tttcctaaaa atttctttgt cattttttga tattccctag gatctttgcc atatacagca
     1981 atggcttctt ctaaaccata atcagtagta aaaatgtcag cttttaaagg ccaaggattg
     2041 ttttggcttc tttgcaaagg tctttttgga cttctttcaa aacgcactat agatttagcc
     2101 ccttgtcttg tcgctacagc gatacaatcc acacttgtat ccccgcttcc tataaccaag
     2161 acatttttac ctttggccat atctgcaccc ttgcctgttt ttaacaaagt tttggtattt
     2221 tgcgttaaaa aatcaagagc aaattcaacc ccttttagct ttctaccttc tatatcaaga
     2281 tctataggct tacttgctcc tgtacaaagc accaaagcat caaattcttt tagaagtttt
     2341 gaaaccttat ctttgctgtc tatattttca ttcactttaa attcaatccc acttttttta
     2401 agcaaatcca cccgtctttg aactatactt ttatcaagct tcatatcagg gatgccatac
     2461 atcaaaagtc cgcctatttt atcgcttctt tcaaaaacac ttactttata acctagtgaa
     2521 tttaaagtat tggcacaagc aagcccagca ggcccacttc ctatgacagc gatttttttg
     2581 ccattgtatt gcttaggttt atttactctt actaaatttt ccttaaaagc attttctata
     2641 atggataatt cattattttt tatgctcaca ctaacaccat ttatcgcaca cacacaagaa
     2701 tcctcacaag gagcagggca aacacgaccg gtaaattcag gaaaaggatt ggtaagatca
     2761 agtctttcat aagcttcttt ccataaagaa cgataaacaa gatcgttcca ttcaggaatg
     2821 agattgttta aaggacagcc cacatctttt ccttcgctca tcacacccgt atgacaaaaa
     2881 gctaccccac aatccataca tcgtccacct tgaatttctt gttctttttt atccaaaggt
     2941 atagtaaatt ctttgaaatt taaaaccctt tccttaggag caattttttt aaaatccatt
     3001 cttttaaagt ctaaaaaacc tcttgcattt cccattttta ctccttattt ttgtgtgatt
     3061 ttcaaaaatg ctgctaaatt tggatctttt tcatttttac aaagatcaag catttttaac
     3121 atcttttcat aatctcttgg catgacttta aaaaagtctt ttttatcgaa tttttctaaa
     3181 atatctttag cctttttaga atctgtataa gtgatatgtt tttctatcac agcttttaat
     3241 tctttttcat ccttagcatt aagatcttta atatccacaa gctcggtatt tacatgagct
     3301 tcattgtgtc ttccaaagat ataaacaacg cccccactca taccagcagc gaaattcgca
     3361 cccacatctc caagaactac aacttgtcca cctgtcatat attcacaacc atgcacgcct
     3421 gttcctaaaa ccacagccaa agcccctgaa tttcttacac aaaatctttc ccctgctata
     3481 ccatctaaat acacttcacc ttttgtagct ccgtataaac aagcatttcc tgcgatgata
     3541 ttttcttcag gtgaaaaagt ggcttcattt gaaatttttg ctatgatttt accaccactt
     3601 aaacccttgc ctaaataatc attgctatcg cctataatct caagtttaat accctttaac
     3661 aaaaacgctc caaagctatt gcctgcattg cctatagctt tgatatggat actatcttca
     3721 tctaaagcat cttttccata agtttttaaa atttcacttg aaagcatagt tgcaaaagta
     3781 cgactttgat ttcctacttc taaagaaagt ttgataggct cttttttctc cacagcattt
     3841 ttacaaagtg gtagtaaaat tctataatca atcgtttttt caagtttatt gtctttataa
     3901 tctttaaaat gcacagcggt tctattataa gtaggcaagg attttaaaat tttatctaaa
     3961 tttagctttc ctgctttacc ttgcacactt ttttggcgga gtttatccac gcgacctatc
     4021 atatcatcaa ggcgttcaaa accaagcctt gccatgtatt ctctaagctc ctcagctata
     4081 aaatacatga aattaatcac atcatctact ttgcctttga aacgatctct aagttctgta
     4141 tcttgagtgg ctataccaaa aggacaggta tttagatgac aaactctcat cattgtacaa
     4201 cctaaaacaa tcaaaggcgc ggttgcaaaa ccaaattctt cagctcctaa aagtgctgct
     4261 atggctaaat cacgcccatt cataagcttt ccatcagttt ctaatcttac cctatctcta
     4321 agcttattta agatcaaagt ttgatgcgtt tcagctaagc ctaactccca aggaattcca
     4381 gcatgcggta tagaagttct aggacttgca cccgtacctc catcataacc tgaaacaagg
     4441 attaaattcg cgcctgcctt agccacacct gcagcaaccg ttcctatgcc attttcgctt
     4501 acaagtttta ctgaaatttt agcgtcttta ttcgcatgtt ttaaatcata aatgagttga
     4561 gccaaatcct caatagaata aatatcatga tgaggaggtg gggaaataag cgtcacacct
     4621 gcagtagaat gtctagcctt agctatccaa ggatagactt taaagcccat taattgtccg
     4681 ccttcacctg gttttgcgcc ttgagcgact ttgatttgaa tttcttttgc atggcttaag
     4741 tagtttaaat ccacgccaaa acgcccactt gctacttgct taatggctga gtttttatcc
     4801 acaccctctt tgatttcata gcgttcttca tcctcaccac cttcacctga atttgattta
     4861 gcacctattt tattcatagc ctgtgctaaa cactcgtgtg cttctttaga aatagaacca
     4921 taactcatcg cccctgttct aaagcgttta actatacttt ctacactttc aaccttatct
     4981 atactgatag cttcactaaa atcaaattcc atcaaagaac gcaaattaac ttgtttttca
     5041 tctactaaag ccgagtattt tttaaagctt ttatagtctt tgttgcgaca ggcttgctga
     5101 agattaaaaa tcacaagcgg atcgattaaa tgttcttctt tagcacttct aaaaccatga
     5161 attcctttag aatctaaagc cttatgtgta tcgttaaaag catgtttgtg taaagcaatg
     5221 agttcttttt caaaatcttc taaatccata ccttcaatgc gtgaagttgt agaagtgaag
     5281 tatttatcaa tcaccttaga gcttaagccc agacattcaa aaagtgcaga gccattataa
     5341 ctttgcaagg tagaaacccc cattttagaa gcaattttga ctataccact tgaacttgcc
     5401 ttgatgaaat tttctaccgc cttttcataa cttaaattta aatctttatt ggcaatgagt
     5461 ttttgtatac tctcataaac caaataagga ttaataacag tcgcaccata acctaaaaga
     5521 catgcaaaat gatgaatttc tctaggttca ccactttcga tgataagact tgtatgtgtt
     5581 cttaaatttt ttcttactag atgattatgc actccagaaa cagcaagcaa agcagggata
     5641 taagcgtttt tttcatccac tcctttatcg cttaaaatga taatagaaac acctttttta
     5701 acctcatctt ctatcttaac gcaaagttca tctaaagcct tttctaaagt ttttttagaa
     5761 taatcataaa gtatagaaaa ttctttaact tgaaatttat ttaaagcctt aacttcaaaa
     5821 agttcttcat tgcttatcac aggcaaggct atttttacgc gttttgcatt gttttcatcg
     5881 ggttttaata aattgccttc gcttcctaga taaatccttg tagaagtaac aatctcttct
     5941 cttatggcat caagaggagg attagttact tgtgcaaaaa gttgtttaaa ataattatac
     6001 aaaggttgat aagttttaga aagtatagcc aaaggagtat ctacacccat agctgctata
     6061 gcttctttac cattttgagc catagcagcc acgctcattt taagctcatc ataactccaa
     6121 ccaaaagctt tttgaagttt taaaacctca tcttctttta aaaactgatg tttataaact
     6181 ccgctttttt gtttttcaag ttcaactaaa tttttaagcc attttttata aggcttagca
     6241 ttagcataat gctctttgat ttcattatca gctataaccc tacctcttgc tgtatcaacg
     6301 agtaaaagtt ttccaggttc taagcgtttt ttagctttga tatttttttc atcaagtttt
     6361 aaagcccctg tttcacttga aagtatgagc atatcatctt ttgtaagata ataccttgaa
     6421 ggacgaaaac catttctatc caaactcgcc cccataatca ctccatcagt aaaaactata
     6481 gcagcaggtc catcccaagg ctccatcaat aaagaatgat attcataaaa agcacgcttt
     6541 ttgctttcca tattttcatt tttatgccaa ggttctggca ccatcatcat aaaagcttct
     6601 tctaaagtac gaccatttag agctaaaaat tctaaagtat tatcaaacat tgcagaatca
     6661 ctgctaagct tagctatgat aggaaaaatt tcatctaaat tttcaaaata ctcactttgc
     6721 atcaagcctt ctctagctct tatgctatca acatttccgc gtatggtatt aatctctcca
     6781 ttatgcacca tataacggtt tggatgggct ctttcccaac ttgggaaggt attagtcgaa
     6841 aagcgagaat gcaccaaagc gatggctgat ttcatattga catctttaaa atcaagataa
     6901 aaatcgctca attgagttga aagaagcatt cctttataaa ctatggtgcg tgaagaaaaa
     6961 cttgaaaaat aaaattttgg cacattaata gctctttttt ctataagtcg acgcgtacta
     7021 taaagcactc tttcaaactc aagtcctgca cttattttac ttggtttttt cacaaaggct
     7081 tgtaaaaaat aaggcatagc ttttaaagca cttgcaccta tatcgctagg attaaaaggc
     7141 acttctctaa aacctaaaaa ttcaagtttt ttatccttta aaccttgtaa aaatatttct
     7201 tttgcttctt cttttgcatc agtattgggt gataaaaaca tctgtgctac accataatca
     7261 ccctttttag gaagttcaaa acccaattct tgagttttaa aaaaatcatg tggaatttgg
     7321 attaaaatcc ccgccccatc acctgaattt tcttcagctc ctgcaccacc tcggtgttca
     7381 agattcatca aaatttctaa agcatcacaa ataaccttat aagaagcaat accgcgtata
     7441 ttagcaactg cagcgatacc acaggcatcg tgttcgttct ttgggtgata taaacctatg
     7501 ctttgattat tttctaggat attttctaaa tccattttgc tctccttata agactgattt
     7561 aaattttgtt agctttataa ggattatagc atacattttt ttaaaatcga tataattttt
     7621 atcttaaaaa taaataaatt aaaaaatatt tttatagatt tgcaaaaatt ataaaaacat
     7681 ggcgataata ctacccaaaa tcaataatgg accattataa aaaataaaag ttggtatgca
     7741 agtatcttta atgtgatcgt gttgtttatc agcatttaat cctacagtag ttcccatggt
     7801 tgtttcactg gctggacttc ctgcatctcc taaagctcct gctactccta agataaatat
     7861 aataagtgct gtactaaaac caagttccaa acaaatagga caaaaaagcg tagctatgat
     7921 aggtatagtt ccaaaagaag tacctatacc catagtgatg ataagtccta ttaaaagcat
     7981 gaaaaatact gctaaaaatt tactttgctc catccaagga acgactgaat ttacaagatc
     8041 tactactgat ccactttctt ttaaaacttc tccatatcct gcagcaacaa ggataacaaa
     8101 agctataaaa cccatcattt taagcccatc atcaaaaact tcattgactt ttgaaaattc
     8161 aactccaccc aaaataacca ttaaaacaaa acccaaaagc cctgataaag gtaaattcat
     8221 agtcaaaatt tgcaaaacta aagttaaaac aagcccagct aaaacacccc attctttacg
     8281 cgtcatttca agattttcta aatccacttt agcaatttct acttcttgat actctcttga
     8341 cttacgataa aacacaaaaa gcgctagaaa aagtcctgct atcatacaaa tagcagcgaa
     8401 atacatagta tttgtaacat catttaaaga tacacttaca ttatttgcat ttaaattatc
     8461 ttttaaaaga tcttgaaaag taagtccaaa gcctactggc aaaaccatat aaggcgtagt
     8521 aagtccaaaa gttaaagcac aagcaaccgc tctacgatcg attttaagtt tattaaaaag
     8581 acttaaaaga ggtggaatca acaaaggtat aaaagccaca tgaataggaa ttaaattttg
     8641 agaaaaacaa gaaatcaaag ctatagacaa aagcaataaa tattttttat gagatataaa
     8701 atgacttact atcttaatca aatatgcagt taaatttgtc tttgaaatcg ctgcggcaat
     8761 ggcccctaaa agtatatagc taagagctgt ttttaaattt tctttcattc cgcttataag
     8821 tatattcata gtatctacga gttcaagatg agaaaataca cctgcaacaa gagctgagat
     8881 caaaagactc aaaagtacat taaaacgaaa caaacaaagt aaagtcatca aaacaacact
     8941 gataataata ggattagtaa gtaaagtcaa aattattcct taaataattt taaaaattta
     9001 attgtagaaa aaacttagtt aaaatgtaat aaaactcgaa catataatga ttttatttta
     9061 atatgcaaaa ttataaaaat aattaatttt tttaatcaaa aagattaata taatcaatta
     9121 ttaaattcct aaaaatttat aataaaataa aa
//
LOCUS       DAPOLW010000062         9001 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.062, whole genome shotgun sequence.
ACCESSION   DAPOLW010000062 DAPOLW010000000
VERSION     DAPOLW010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9001)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9001)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9001
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.062"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            52..1341
                     /gene="glmU"
                     /locus_tag="ROE18_001027"
     CDS             52..1341
                     /gene="glmU"
                     /locus_tag="ROE18_001027"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HDX3651209.1"
                     /translation="MKTSILILAAGLGTRIKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALSGFEPKNERVLILCGD
                     MPLVEQTSLEALLGNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQKKIKKYWMQQGVIFHLPQSTFIGADVEFVGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSINVEKGALFINRAGHKMIKDYYYKKFQK"
     gene            1338..2492
                     /gene="coaBC"
                     /locus_tag="ROE18_001028"
     CDS             1338..2492
                     /gene="coaBC"
                     /locus_tag="ROE18_001028"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HDX3651210.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNGLLKFAS
                     KMSFEALVDEVLCEENESWQNSNNHIAFSKDVDLVLFTPASVNSINKLAFGIADNLFI
                     QTLIAANKPLIIAPAANTNMFHHFSTQNSLKILKENKALIIEPICKVLACKDEGVGAL
                     AEVKDIFNITKRELLKEKFWCNKSVVITGGGTRERIDDVRCVSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLSHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQGKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            2489..3106
                     /locus_tag="ROE18_001029"
     CDS             2489..3106
                     /locus_tag="ROE18_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651211.1"
                     /translation="MSMINSTLPIQMKVLAKSGYGHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILEDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFNFENKSCLFQMRKRAKYLEIYLYFSVFGALKILID
                     SQGISVFTPFAKVQKFLNEHLDFNVSQENKIEPLFVFKRLFDFKG"
     gene            3110..3778
                     /gene="uppS"
                     /locus_tag="ROE18_001030"
     CDS             3110..3778
                     /gene="uppS"
                     /locus_tag="ROE18_001030"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HDX3651212.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
     gene            3775..4551
                     /locus_tag="ROE18_001031"
     CDS             3775..4551
                     /locus_tag="ROE18_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDX3651213.1"
                     /translation="MIFFIIILGACFGSFCTSLASRIIEKKLFFISRSFCFSCDTKLK
                     YYEIIPIFSYIFLKAKCQTCKCHLSISLLINEILGAILLILVYSLSQNFYDFLFLSLF
                     LFNLFLLSLIDIKLKAVPQILLWSAFLFAFFYAFRESEILHFLIFKEFSGGFLLNAFS
                     FGGFVFLLKSLVFFLMNFQKKDEILENLGDADIIIMSCIGGILGFEYGFLVLFIASIL
                     TLPFFIFFRIKAIKEQELAMIPFLNIAFVAVLFYKNLGLF"
     gene            4551..5576
                     /locus_tag="ROE18_001032"
     CDS             4551..5576
                     /locus_tag="ROE18_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HDX3651214.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDSDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENLQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            5573..6298
                     /gene="truA"
                     /locus_tag="ROE18_001033"
     CDS             5573..6298
                     /gene="truA"
                     /locus_tag="ROE18_001033"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HDX3651215.1"
                     /translation="MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHLGIFSPL
                     LMASRTDKGVHASYAVASVECGDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHASYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(6295..7506)
                     /locus_tag="ROE18_001034"
     CDS             complement(6295..7506)
                     /locus_tag="ROE18_001034"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HDX3651216.1"
                     /translation="MLELNKIYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSTEQKQHGVIAASAGNHAQGVAISAKKFSIKAVIVMPEST
                     PLLKVSATKALGAEVILRGDNFDEAYAFATSYAKENNLSFIHPFEDEFVMAGQGTLML
                     EMLDEISDLDMIIAPVGGGGLISGISSTAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVAALLHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIYVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(7506..7919)
                     /locus_tag="ROE18_001035"
     CDS             complement(7506..7919)
                     /locus_tag="ROE18_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HDX3651217.1"
                     /translation="MNEKETISYIINTSKNIVIFALSPDKTKASYRVAEFLQRKNYKI
                     FPIYPKEEFILNEKVYRNLDQIEEKIDTLILFRKGEVALEILPKLVEKNIKNLWLQLD
                     ISNETAKEECKKLDINFIQNRCIMLEYPHFKTKEK"
     gene            8038..8454
                     /locus_tag="ROE18_001036"
     CDS             8038..8454
                     /locus_tag="ROE18_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HDX3651218.1"
                     /translation="MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNPNFDKSL
                     FSATGVKIMPFVVLLLFLSGGALAGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFI
                     LKKKNPLGVFIHPFVFVLCIAIVILAKLMNYFFIPC"
     gene            complement(8441..>9001)
                     /locus_tag="ROE18_001037"
     CDS             complement(8441..>9001)
                     /locus_tag="ROE18_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HDX3651219.1"
                     /translation="EFNNDCFIQPNTAINEKMITWVCEILNTQKRMDLLELYCGYGNF
                     TLALAPFFFKILATEISKSNINFALKNCELNNTTNIHFARLSSEELSLAIKKEREFFR
                     LKDIRLDDFNFSHVLVDPPRAGLDKSVIDLIKKYGNIIYISCNPMTLKENLKELSLTH
                     RVEEFALFDQFVNTPHLECGVFLSKV"
BASE COUNT         2995 a         1132 c         1534 g         3340 t
ORIGIN      
        1 ctttaaactg ctaaaatagt cttttagact tcttaataac aaaggtaaaa aatgaaaact
       61 tctattttga ttttagcggc aggattaggc actagaataa aatcacaaaa gccaaaggtt
      121 ttgcaagagc tttgtcaaaa aagtatgatt ttacacattt taaaaaaggc ttttgcttta
      181 agtgatgatg taagtgtagt tttatcgcat caaaaagaac gcgttgaaaa agaaatttta
      241 gaatattttc caaaaacaca aattttagag caagatttgc aaaattatcc aggaactgcg
      301 ggagctttaa gtgggtttga gcctaaaaat gaaagagtgt tgattctttg tggtgatatg
      361 cctttggttg agcaaacaag tttggaagct ttgttgggta ataatgcaaa attaaatcta
      421 gcagttttta aagcaagaga tcctaaaagt tatggtaggg tggtgataaa aaacgatagc
      481 gttgaaaaaa ttgttgaatt taaagatgca aatacgcaag aaaaagagat aaatacttgc
      541 aatgctgggg tttatgtgat tgactcgagg cttttaaaag agcttttacc tttgattgat
      601 aacaataatg cggcaaaaga gtattattta accgacattg taaaactagc aaaagaaaaa
      661 gatgtgatga ttaaagcagt ttttgtagat gaagatgaat ttatggggat taatgataaa
      721 tttgaactca gtatagctga aaatttcatg caaaaaaaaa ttaaaaaata ctggatgcaa
      781 cagggtgtga tttttcattt accgcaaagc acttttatag gtgcagatgt tgaatttgta
      841 ggtgaatgtg aagtatatga aaatgtaagg atagagggca aaagtaagat tataaactct
      901 atcattaaaa gttcaagcgt gatagaaaat tccatcgtag aaaatagcga tgtagggcct
      961 ttggcacatt tgcgtccaaa ttgtgagtta aaaaacactc atataggaaa ttttgtagaa
     1021 tgcaaaaatg caaagttaaa taccgtaaaa gcagggcatt tgagctattt aggagattgt
     1081 gagatagata gtggaaccaa tataggctgt gggactatca cttgtaatta tgatggggta
     1141 aaaaagcata aaaccatcat aggaaaaaat gtttttgtag gttctgatac gcaatttatc
     1201 gcacctgtaa aaatcgaaga tgaagtaatc atagcagcag gaagcacagt aagtatcaat
     1261 gtagaaaagg gtgctttgtt tatcaataga gcagggcata aaatgataaa agattattat
     1321 tataagaaat ttcaaaaatg aaaaccatac ttttagccat tagcggtagt atagcttttt
     1381 ataaatctta tgagcttatt tctttgttta aaaaagaagg ctttagggta aaagttttgc
     1441 tttctaatgg tttgttaaaa tttgctagca aaatgagttt tgaagccttg gttgatgaag
     1501 ttttatgtga ggaaaatgaa agttggcaaa attcaaacaa tcacatagct tttagcaagg
     1561 atgtagacct tgttttgttt acccctgcaa gtgttaattc tatcaataaa cttgcttttg
     1621 gtatagcgga taatcttttt atccaaactt taattgcagc aaataaacct cttatcatag
     1681 ctcctgcggc aaatacaaat atgtttcatc attttagcac gcaaaattct ttaaagatac
     1741 ttaaagaaaa taaagctttg attatagagc ctatttgtaa agttttagct tgtaaagatg
     1801 aaggcgtagg agccttagct gaagttaagg atatttttaa tatcaccaaa agagagcttt
     1861 taaaagaaaa gttttggtgc aataaaagcg tagttatcac aggtggcggc acaagggaaa
     1921 gaatcgatga tgtgcgttgt gtgagtaatt tttcaagtgg aaaaatggca aaagccatag
     1981 ctgatgcttt ttatttttta ggagctaggg taaaactttt aagctctgtg gaatttgata
     2041 cgccttatga gctttgcaaa tttgaaagtt ctaaggatct aaaggagctt ttggataaaa
     2101 atttaagtca tgactttttg attatgacgg ctgcagtgag tgattttatc cctcaaagtg
     2161 taaaagggaa aattaaaaaa aatgagcatt tacagggttt aaatttgcat ctatctttaa
     2221 atgaagattt gcttaaaact tgcaaatttc aaggcaaaaa gataggtttt aagatggaat
     2281 ttgattctca aaatgcctta gaaaatgcga aaaaatctct aaaagataaa caacttgata
     2341 tggtttgcct taatatcatt gatcaaaaaa attattttgg aagtgatcaa aatgaacttt
     2401 attttatcac tttaaacaat gaaaataaaa gcactttgca aagcaaagaa aaattggcat
     2461 ttgaattagt aaaatggtgt gaaaaattat gagtatgatt aattctactt tacctataca
     2521 aatgaaagtt ttagctaaat caggttatgg acattatacg cttttattaa atcacaaaaa
     2581 gattcaaacc aaaagcatga tagagcttga aattggtgct gaatatttag ctgaacttta
     2641 tatgcaaaat ggtggagtta tacaatttaa acatctttca aagcgtccta atttcaaacc
     2701 ttttgaagag ggattggctt tgataatcgc tattttagag gataaaattt cttataaaaa
     2761 attcattata caaaatcttt tagattgtaa agatatagag cgttatcaga tattaaaaga
     2821 aatgcttttt gcaagttttg aaaatattta tcatattcct tttaactttg aaaataaatc
     2881 ttgcttgttt caaatgcgta aaagagcaaa atatttagaa atttacttat attttagcgt
     2941 ttttggagct ttaaaaattt taatagactc gcaaggcatt agtgttttta caccttttgc
     3001 caaggtgcaa aaatttttaa acgaacattt agattttaat gtatctcaag aaaacaagat
     3061 tgaacctttg tttgttttca aaaggctttt tgattttaaa ggatgaaaaa tgaatgaatt
     3121 aaaacacctt gctgttgtta tggatggcaa taggcggtgg gctagagcta agggtttttt
     3181 ggcaaagctt ggatattccc aaggagtcaa aactatgcaa aaattgatgg aagtttgcat
     3241 ggaagaaaat atttcaaatt taagcctttt tgcttttagt acggaaaatt ggaagcgtcc
     3301 taaagatgaa attgatttta tctttgaact tttagatcgt tgtttagatg aagctttaga
     3361 aaaatttgaa aaaaataatg tgcgtttaag agctataggt gatttatcgc gcttggaaga
     3421 taaagtaaga gaaaaaatta ccttagttga agaaaaaaca aagcattgtg acgcactttg
     3481 tgttaatttg gctataagtt atggtgcaag agatgagatt ataagagctg ctaagcgtgt
     3541 gattgaaaaa aaacttgagc taaatgaaga aaatttaacg caaaatttag atttaccttt
     3601 agatgtggat ttgatgcttc gcgttggaaa cgctaaaaga ctttcaaatt tcttactttg
     3661 gcagtgttca tatgctgaaa tttattttag tgaaacttta tttccatctc ttaccaagag
     3721 agaatttaaa aggattatta aagaatttag aaatagagaa agaacttttg gaaaatgata
     3781 tttttcataa taattctagg ggcttgtttt ggttcttttt gcacaagttt ggcaagtagg
     3841 ataattgaaa aaaaactctt ttttatctcg cgctcttttt gtttttcttg tgatacaaaa
     3901 ttaaaatact atgaaattat tcctattttt tcttatattt ttttaaaggc aaaatgtcaa
     3961 acttgtaaat gtcatttgtc tatttctttg ttaatcaatg aaattttagg cgcaattttg
     4021 cttattttgg tttattcttt aagtcaaaat ttttatgatt ttttattttt atctctattt
     4081 ttatttaatc ttttcttact ttctttgatt gatattaaac tcaaagccgt accacaaatt
     4141 ttactttgga gtgctttttt atttgctttt ttttacgcct ttagggaaag tgaaatttta
     4201 cattttttga tttttaaaga gtttagtgga ggttttttac taaatgcttt tagttttgga
     4261 ggatttgttt ttttattaaa aagtttggtt ttttttctaa tgaatttcca aaaaaaagat
     4321 gaaattttag aaaatttggg tgatgctgat attattatta tgtcttgtat aggtggaatt
     4381 ttaggttttg agtatggatt tttagtatta tttatagctt ctattttgac tttgcctttt
     4441 tttatttttt ttagaattaa agcaataaaa gagcaagaac ttgctatgat acccttttta
     4501 aatatcgctt ttgtggcagt tttattttat aaaaacttag gattattcta atgaagctta
     4561 gtttaagata tgttttaaat caatttttaa gtacgaattt gtctatattt ttcgtacttt
     4621 ttgctattgt atctatggtg ttttttattc aacttgcaaa acttacttca agtatagaga
     4681 ttagtttttt ggatctttta aagctttatg ggtttatgtt gcctagaatt ttaattttta
     4741 ccttgcctat atcttttttt atttctttaa ctttggcttt gtttaggctt tctaaggaaa
     4801 atgaaagcat agtgcttttt actttgggat tttcaccaat gattttggca aaatttttcc
     4861 ttaaaattgc aagcttgatt agtgctttta tgcttgttgt agctttggta atgataccta
     4921 tagtatttga acttcaggat aactttgtaa actataaaag cactcaagtg aaatttaact
     4981 acaaaacagg agaatttgga caaaaatttt tagactggat gatttttata gaaaaacaag
     5041 atagtgataa gtatgaaaac ataattatgt atcgccctaa acataaagca gatgataaag
     5101 aacaacttat catagccaaa gaagcgcatg tgcaaagaaa agatgatagc tttgctttta
     5161 gcttaaatca aggcaaaatg tataattttg agcaaggtca aagtattttt agtggagaat
     5221 ttgacacttt agtagtaaat actcagttta atacagacaa tcttcaaaca aagaaatttt
     5281 atgaatactg gaatgattta aacgaaaatc tacaaagagc aagagaattt gtgatttata
     5341 caactatagc cttgtttcca cttgctagta cgctttttgc gctttgtttt ggtttggtta
     5401 cttatcgtta tgaaaaaggc tatgtgtatt taggtatgtt tggagtgatt gctatatatt
     5461 ttggactttt aagttctttt tctcaacctc caattttggc ttgtcttgga attttttctt
     5521 taagtttatt tgtttcggct tattgtttta agaaaatgat tttgagtcga tattgatgaa
     5581 aataaaaatt atattttctt atgatggctc tgctttttta ggttctgcta ctcagcctca
     5641 taaaaaaggt gttcaagatg ctttaagtgg ggccttatcg catttgggta ttttttcacc
     5701 tcttttgatg gcttctcgta cagataaagg agtacatgca agctatgctg tagctagtgt
     5761 ggagtgtgga gattatttta caaatttaga atatcttcaa aaacaactta ataaattttc
     5821 ccatcctttt atccatatca aaaaaattga aaaagtaaaa gatgattttg aagtaagatt
     5881 tgatgtaaaa agtagagaat accgctatat attttctcac gcttcttata gtccttttat
     5941 ggcttcttat gtacattttt atcctaaatt tgacctaggt aaagctaatg aacttttggg
     6001 tttttttgta ggaaaaaagg atttaaagtt tttttgcaaa agtggagggg ataataaaac
     6061 gactttaaga gaaattttta ttgctagagc ttatgcttat aaagatttta gcatttttca
     6121 ttttaaagct aatggttttt taagagggca aattagatta agcgtagcaa gcgttttaaa
     6181 agttttagaa ggaaaaatga gtgaaaaaga actcaaagaa cagattgagg ctaaaaagca
     6241 atacaatcac tttttagcac cgccaaatgg gctttattta agccgtatat gttattaaaa
     6301 actttcatag aaattaaaag ccttttgggt taaaattttt cttatttctt cttgatgttc
     6361 tttacctttg gtttctagag taattgaaat catcgcatcg ccataatcaa gcttggtaga
     6421 aaatctatca tagtcgattt ttactatatt tgcattggct atttttaagc tgtctgtaag
     6481 gtgtaataat gccccaggtt tatctactaa agtaacataa atttgcattt ttctgtaaga
     6541 tttaaataaa cctttttcta tgatgatatt tagcatttgt gcatcgatat tgcctccgct
     6601 taaaactacg ccaatttttt tatgattttg tgtatttatt ttttgatgaa gcagggcggc
     6661 tacactcgca gctcccgcac cttcgactat gattttatgt ttttcgagta aaaacaatac
     6721 cgcattagct atttcttcat catcaacttg gataaaatca tctacacatt ctaagataat
     6781 gttaaaattt ataggatttg catcacgcac agcaatacca tcggctatag tgcgtacgct
     6841 tttcgcattt ttgatttttt tagcatgaaa actttcatac attgcaggag ctcctttggc
     6901 tccaactccg atgattttaa tgttaggatt gatttgttta gctgtacttg agataccgct
     6961 tataagtcct ccgcctccaa caggtgcaat aatcatatca agatcgctta tttcatcaag
     7021 catttcaagc attaaagttc cttgtcctgc cattacaaat tcatcttcaa aaggatggat
     7081 aaagctaaga ttattttctt tagcataaga ggttgcaaaa gcataggctt catcaaaatt
     7141 atctcctctg agtatcacct ctgctcctaa ggcttttgta gcagaaactt ttaagagtgg
     7201 agtggattct ggcattacga taactgcttt aatgctaaat ttttttgcac taatggccac
     7261 gccttgagca tggtttcccg cacttgctgc aatgactcca tgttgttttt gttcagtgct
     7321 aagattggct attttattgt aagctccacg aattttataa gcacctgtaa tttgtaaatt
     7381 ttcattttta agataaatct cactttgaca aatatcactt aaaaaagaag agtatatgaa
     7441 aggagttttg tttacaaatc ctgaaatttg ttgttttgct ttgtaaattt tattaagctc
     7501 taacactatt tttcctttgt tttaaaatgc ggatattcta gcataatgca acgattttgt
     7561 ataaaattta tatctaattt tttacattct tctttggctg tttcattact aatatcaagt
     7621 tgaagccata ggtttttaat atttttttca acaagcttag gaagaatttc tagcgccact
     7681 tcaccttttc taaaaagtat aagtgtatcg attttttctt ctatttgatc taaatttcta
     7741 taaacttttt catttaaaat aaactcttct ttaggataaa taggaaaaat tttataattt
     7801 tttctttgta aaaattctgc taccctataa gaagcttttg tcttatctgg acttaaagca
     7861 aatatgacaa tatttttact tgtatttata atataagaga tagtttcttt ttcgttcatt
     7921 gttaaccttt gttttggtat tttatcttaa atgattaaaa aattaactaa agtgaattca
     7981 aaaaatgaaa aaagtgttat aatatagcaa attccgaagt ttaataagga gggaaaaatg
     8041 gaagaatttt atccatatac tttaacaatc catcttcttt gtgctatttt gtttataggt
     8101 tatttgtttg ttgatgtatt tgttttgggt gtagttaaaa agaaaaatcc taattttgac
     8161 aaaagtcttt ttagtgctac tggagttaaa ataatgcctt ttgttgttct tttgcttttt
     8221 ttaagtggag gtgctttggc aggttttcat tttaaacctt taaatttact ttttgctgta
     8281 aaaattattt tggcttttgg aattttatct ttagttgttt tttctttatt ttgtcatttt
     8341 atattaaaga agaaaaatcc actcggtgtt tttatccacc cttttgtatt tgtgctttgt
     8401 atcgcgatag taatactggc taaattaatg aattattttt ttataccttg ctaagaaata
     8461 ctccacattc aagatgtgga gtattgacaa attgatcaaa cagagcaaac tcttccactc
     8521 tatgtgttag gcttaattct tttaaatttt cttttaaagt cataggattg caagaaatat
     8581 aaataatatt tccatatttt tttattaagt caattacgct tttatcaagt cctgcacggg
     8641 gtggatcaac taaaacatga gagaaattaa aatcatctaa tcgaatatct tttaaacgaa
     8701 aaaattctct ttcttttttg atagcaagac ttaattcttc gcttgaaagt cttgcaaagt
     8761 ggatatttgt tgtattgtta agctcgcaat tttttaaagc aaaattaata ttgctttttg
     8821 aaatttcagt ggctaaaatt ttaaaaaaga atggcgctaa agctaaagta aaatttccat
     8881 atccacagta aagctcaagc aaatccattc ttttttgagt gtttaaaatt tcacacaccc
     8941 aagtaatcat tttttcattt atagcagtat taggctgaat aaaacaatcg ttgttaaatt
     9001 c
//
LOCUS       DAPOLW010000063         8860 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.063, whole genome shotgun sequence.
ACCESSION   DAPOLW010000063 DAPOLW010000000
VERSION     DAPOLW010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8860)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8860)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8860
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.063"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..2680
                     /locus_tag="ROE18_001038"
     CDS             <1..2680
                     /locus_tag="ROE18_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDX3651220.1"
                     /translation="VLKKLPSKKHLQNYHIDKKQNFDLKCFEDEISRLGYEFVDIVQD
                     KGEISIRADIIDIFCINEENPIRILLFGEEIESIRYFDLQSQKSIPNELEHFEICPFL
                     KYFDKENYEIFKDKLEDFQSDTLIHDINSLGFWCIDDFFNYLELDFLACEKFDINEYE
                     KDISFVNAKILPQAKKFKELQSSYNKDFFEFHKNKKITLLAKNEALFKALELEDTQNI
                     HFVKSDLRLNLISHEELIISLNQKEKQKTRKKASLIIDELKNGDYIVHEDYGVGKFLG
                     LEMIVISGAKKEFVAIEYQNSDKLLLPVENLYLIDKYLGVSGSIPSLDKLGKTSFIKL
                     KEKLKTKLLAIASEIVIMAAKRSLVQAKKITVDLNRQTDFIASAGFIYTSDQDKACHE
                     ILQDFQSGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPTTLLSHQHYKTL
                     KKRFDPFDIKVFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALLSVECENLALVIID
                     EEHKFGVKQKEKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSVLQTPPEDRMDVR
                     TFVKENDDALLKEAIARELRRGGQIFYIHNHIASIEQCKKHLLELFSTLRILILHSKI
                     DAKMQEEEMLKFENKEYDLLLSTSIVESGIDLPNANTIIVEKSDRFGMADLHQLRGRV
                     GRSDKQGYCYFLIEDKNAITKDALKRLVSLESNSFLGAGSILAYHDLEIRGGGNLLGV
                     DQSGHIEQIGYSLYLKMLEDELNALSKNEVDQKENKLDLKLNINAFLNSELISEDRLR
                     LELYRRLSKCEQVHEVYEIEGEIEDRFGKLDIYTKQFLSLITIKILALNKFKSISNYE
                     QNIQFTALNDEKELIKAKSKDDDDILEAILMHLRKA"
     gene            2682..3443
                     /locus_tag="ROE18_001039"
     CDS             2682..3443
                     /locus_tag="ROE18_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDX3651221.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPIALKDLVGMESQKKALYE
                     NTLNFIQDKGANHALLWGSKGTGKSSLIKAIFNEFKEQGLRLVELNKEDLFALADIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     ITDNLDTQIAHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLHAKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            3440..4126
                     /locus_tag="ROE18_001040"
     CDS             3440..4126
                     /locus_tag="ROE18_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HDX3651222.1"
                     /translation="MTGAQIFTKLLNLDLNYHDFDWLENQGLSEFELLISVVLTQNTN
                     WKNVLKALENLKKENIASLEQINTLSNLELATLIKPSGFYNTKTKRLKGLVESIINTY
                     ENLENFKTNASREWLLNIKGLGFESVDSILNYLCKREILVVDNYSLRLAFYLGYEFEN
                     YEELREFFQSDIESEQENLYKILGKKCEFYELYQIFHALIVVFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            4123..4935
                     /gene="thiD"
                     /locus_tag="ROE18_001041"
     CDS             4123..4935
                     /gene="thiD"
                     /locus_tag="ROE18_001041"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HDX3651223.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPTQSVDEQMLAVFEDIVPKATKIGMIGSCELMSCVAKNLSEF
                     KPQNVVIDPVMFAKNGYALMPQENCDFFKQTIIKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGAKAVLLKGGHSEANANDVLYNGKEIYILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKNLFHAVSEAKEYVRNAIYYSLNLGKGCGPTNHFFKFLDEK"
     gene            4925..5557
                     /gene="thiE"
                     /locus_tag="ROE18_001042"
     CDS             4925..5557
                     /gene="thiE"
                     /locus_tag="ROE18_001042"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDX3651224.1"
                     /translation="MKNKLDLSLYLVATKGNKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKSYKIPFLINDRVDIALALDADGVHLGQEDLEAKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGVNYLGCGAIKATPTKESSLLSLELLSQICDKSPIGVVA
                     IGGIDKEALVELKGINLSGVAVVRAIMDAKDAFLAAKELKRKIYENLSLK"
     gene            5535..6164
                     /locus_tag="ROE18_001043"
     CDS             5535..6164
                     /locus_tag="ROE18_001043"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HDX3651225.1"
                     /translation="MKIYLLNETPFEGVENLILNEIVFYDFSVDLSLYDALICTSKNA
                     LKALQHAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLECKEELKMQ
                     KCLYLRAKNIVSTLNLDLKNVGVDLDEMIVYENVFKKGDKKLTYPAIFIFTSPLSVEN
                     FLKFYSLKEEDKVVVIGQSTAKKLLNFKNLYICENQSLLDCVKLAKTLV"
     gene            complement(6161..6613)
                     /locus_tag="ROE18_001044"
     CDS             complement(6161..6613)
                     /locus_tag="ROE18_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651226.1"
                     /translation="MKKAYVLIWTIFLILLISLWMSLTLNISSYTPKIIQDSYYYLQA
                     QILSHNATQFSKYFLYQAKQENKECLDNIYFNYTKALIKIKYFYPIAQCVNFKFSNFN
                     PDANLSKDGVIIAHISIALNRDKNVNDEILLTKSIIIYPKENFWNLKN"
     gene            complement(6610..7272)
                     /locus_tag="ROE18_001045"
     CDS             complement(6610..7272)
                     /locus_tag="ROE18_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651227.1"
                     /translation="MSKAFTLFELIISLILFTFITSLLSKPLMDFYHLNFTALHTNNL
                     ITQAHLNLLKIEKLIQNCINITFSQNTLKCLLKDELISLKDNKLYLINSALILENNHT
                     LYSPHSDFKTQLQNRKDLYNDNEHISYAYKINKIEKISILENGISANFTGSFIPLQAQ
                     LVIKLQNEELIYEIKPKFNEQLNQQGLISKNISSFNLQNNKLKICLKRQTKHCLEKRI
                     LL"
     gene            complement(7269..7571)
                     /locus_tag="ROE18_001046"
     CDS             complement(7269..7571)
                     /locus_tag="ROE18_001046"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HDX3651228.1"
                     /translation="MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERL
                     YKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDGIFQFQKLYFQDQNYSVYFKE"
     gene            complement(7568..8299)
                     /locus_tag="ROE18_001047"
     CDS             complement(7568..8299)
                     /locus_tag="ROE18_001047"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HDX3651229.1"
                     /translation="MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALTKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTV
                     KGIKILEQKGIRGSFFEAINASSAK"
     gene            complement(8299..8688)
                     /gene="fliW"
                     /locus_tag="ROE18_001048"
     CDS             complement(8299..8688)
                     /gene="fliW"
                     /locus_tag="ROE18_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HDX3651230.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
BASE COUNT         3203 a         1013 c         1547 g         3097 t
ORIGIN      
        1 tgttttaaaa aaacttcctt caaaaaaaca tttgcaaaat tatcatatcg ataaaaaaca
       61 aaattttgat ttgaaatgtt ttgaagatga aatttcaaga ttgggatacg aatttgtaga
      121 tatagttcag gataaaggtg aaatttcaat tcgtgcggat attattgata ttttttgcat
      181 caatgaagaa aatcctatta gaattttgct ttttggcgaa gagattgaaa gtataagata
      241 ttttgatttg caaagtcaaa agtctattcc taacgaacta gaacattttg aaatttgtcc
      301 ttttttaaaa tattttgaca aagaaaatta tgaaattttt aaggacaaat tagaagattt
      361 tcaaagtgat actttaatac atgatatcaa ttctttaggg ttttggtgta ttgatgattt
      421 ttttaattat ttagaacttg attttttagc ttgtgaaaag tttgatatta acgaatatga
      481 aaaagatata agttttgtga atgcaaaaat tttacctcaa gctaaaaaat ttaaagaatt
      541 gcaaagttct tacaataaag atttttttga atttcataaa aataaaaaaa tcacactttt
      601 agctaaaaac gaagctttgt ttaaagcttt ggagcttgaa gatactcaaa atattcattt
      661 tgtaaaaagt gatttaaggc ttaatcttat tagtcatgaa gagctaatca tttctttaaa
      721 tcaaaaagaa aaacaaaaaa caagaaaaaa agctagtttg attatagatg agcttaaaaa
      781 tggggattat atagtacacg aagattatgg ggtaggtaaa tttttaggtc ttgagatgat
      841 agtgataagc ggagcaaaaa aagagtttgt tgctatagag tatcaaaatt ctgataagct
      901 tttattacca gtggaaaatc tttatttaat tgataaatat ttgggcgtga gtggatctat
      961 tccaagttta gataaactag gtaaaacaag ctttattaaa cttaaagaaa aattaaagac
     1021 taaactttta gccatagctt ctgaaattgt tattatggcg gctaaaagat ctttggtgca
     1081 agcaaaaaaa attacagtgg atttaaatag acagactgat tttatagcta gtgcgggttt
     1141 tatttataca agcgatcaag ataaagcctg tcatgaaatt ttgcaagatt ttcaaagtgg
     1201 aaaagtcatg gataggcttt taagcggtga tgtgggtttt ggaaaaacag aagtcgctat
     1261 gaatgctatt tatccagtag ttaaaagtgg attttgcgca tttttatttg cgcctacgac
     1321 tttgctttct catcagcatt ataaaacctt aaaaaagcgt tttgatcctt ttgatataaa
     1381 ggtttttaaa ctggatcgct ttacaagtag tgcagaaaaa aaacaagttt tacaaaattt
     1441 aaaagaaaat aaagcttgtg tagttgtagg aactcatgca cttttaagtg tagaatgtga
     1501 aaatttagcc cttgttatta ttgatgaaga gcataaattt ggagtgaagc aaaaagaaaa
     1561 gcttaaagaa atcactcaaa attcacatat tttatccatg tcagcaaccc ctataccaag
     1621 aagcttaaat caagctttaa gttctataaa atcttatagt gttttgcaaa ctccaccaga
     1681 agatagaatg gatgtaagaa cttttgtcaa agaaaatgat gacgcacttt taaaagaagc
     1741 tatagcaaga gagttaagac gtggtgggca aattttttat attcataatc atattgcaag
     1801 tatagagcaa tgtaaaaagc atttattaga acttttttct actttgcgta ttttgatttt
     1861 acattctaaa atcgatgcca agatgcaaga agaagaaatg ttgaaatttg aaaacaaaga
     1921 atatgatttg cttttaagta cctctatcgt agaaagtggg attgatttac caaatgcaaa
     1981 tactatcata gtagaaaaaa gcgatcgttt tggcatggct gatttgcatc aattgcgtgg
     2041 gcgtgtagga agaagtgata agcaaggtta ttgttatttt ttaattgaag ataaaaatgc
     2101 tatcacaaaa gatgctttaa agcgtctagt ttccttagaa agtaattctt ttttaggcgc
     2161 aggttctatt ttggcttatc atgatcttga aattcgtggc ggtggaaatt tattaggcgt
     2221 agatcaaagt ggacatattg agcaaattgg atatagttta tatcttaaaa tgttagaaga
     2281 tgaacttaat gctttaagta aaaatgaagt ggatcaaaaa gaaaataaac ttgatttaaa
     2341 actcaatatt aatgcctttt taaacagcga acttatcagc gaagatcgct taagattaga
     2401 actttataga agacttagca agtgtgagca agttcatgag gtttatgaga tcgaaggtga
     2461 aattgaagat cgctttggaa aacttgacat ttatactaag caatttttat ctttgattac
     2521 tattaaaatt ttagctttaa ataaatttaa aagcattagt aactatgagc aaaatattca
     2581 atttactgct ttaaatgatg aaaaagaact catcaaggca aaaagcaaag atgatgatga
     2641 tattttagag gcaattttaa tgcatttaag aaaggcttaa aatggattgg aataaaactt
     2701 atgcagcaat ttatagagca agaaaagatt atttaaagcc tatttttgaa atcgatccta
     2761 ttgctttaaa agatttagta ggtatggaaa gtcaaaaaaa agcactttat gaaaatactt
     2821 taaatttcat tcaagataag ggagcaaatc acgcactttt atggggatct aagggcactg
     2881 gaaaatcaag tttaattaaa gctatattta atgaatttaa agaacagggc ttaagacttg
     2941 tcgaattaaa taaagaagat ttatttgcct tagcagatat catcgatgaa atcagattag
     3001 aaaattttaa attcatactt ttttgtgatg atttttcttt tgaaaaggga gatgatagtt
     3061 ataaattttt aaaaccttta cttgagggaa gcatagaaaa agccccgaat aatgtaatta
     3121 tttatgcgag ttcaaatcgt aggcatttat taagtgaaag cattactgat aatcttgata
     3181 cgcaaattgc acatacagaa cttcatttaa gcgatgctgc tgaagaaaga ttaagcttga
     3241 gtgatagatt tggtttgtgg ttaagttttt atcagggaaa tttagaagag tatttaaaga
     3301 tgatagattt ttattttaaa gattattctt gtgataaaga gcttttgcac gctaaagcta
     3361 aagaatttgc tactctaaga gcaagtagaa gtggtcgtac cgcaaagcaa ttttatttag
     3421 cttttaagga gaattttaaa tgactggagc acaaattttt accaagcttt taaatttgga
     3481 tttaaattat catgattttg attggcttga aaatcaagga ttgagtgaat ttgagctttt
     3541 aatttctgtc gttttaactc aaaatacaaa ttggaaaaat gtcttaaaag ctttagaaaa
     3601 tttaaaaaaa gaaaatattg caagcttaga acaaatcaat actttatcca atttagaact
     3661 tgcaacttta attaagccta gcggatttta taataccaaa actaagcgtt taaaaggttt
     3721 ggtagaaagt atcataaaca cttatgaaaa tttagaaaat tttaaaacaa atgcaagcag
     3781 agaatggctt ttaaatatca aaggtttagg ttttgaaagc gttgatagta ttttaaacta
     3841 tctttgcaaa agagagattt tggttgtaga taattatagt ttgcgtttgg ctttttactt
     3901 aggttatgag tttgaaaatt atgaagaatt aagagaattt tttcaaagtg acatagagag
     3961 tgagcaagaa aatttgtata aaattttagg aaaaaaatgc gaattttacg aactttatca
     4021 aatttttcat gctttgattg tagtttttgc aaaacagagt tttaaaggac aaaaattaag
     4081 ccctaagggt gaagaatgga tcaaaatttt aaaggaagat ttatgaaagc aaaaggaagt
     4141 gaacttatac ctgttttaac tatagcaggg agtgattgta gtggtggagc agggatacaa
     4201 gccgatctta aaacctttag tgcacacaat ctttttggta tgagtgtggt tttaagtgtg
     4261 gtagctgaaa ataccgcaag ggtgatttct gtacacgata tacctactca aagcgtggat
     4321 gaacaaatgc ttgccgtgtt tgaagatata gtgccaaagg caactaaaat cggaatgata
     4381 ggttcttgtg aattaatgag ctgtgtagct aaaaatttaa gcgagtttaa acctcaaaat
     4441 gtagttattg atcctgtaat gtttgccaaa aatggctatg ctttaatgcc gcaagaaaat
     4501 tgtgattttt tcaaacaaac tataataaaa tttgcagaca ttcttactcc taatattcct
     4561 gaagcagagt ttttatgtgg ttttaagatc gctaatgaag agcagatgat aaaagcagct
     4621 aagcatttat gcagcttggg ggctaaggca gttttactta aaggcggaca tagtgaagca
     4681 aatgccaatg atgtgcttta taatggaaaa gaaatttata ttttaaaagg cgaacgcata
     4741 gaaactaaaa atactcacgg tacaggttgt acgctttctt cggctattgc tagtaattta
     4801 gctaaaggca agaatttatt tcacgctgtt agtgaagcta aagagtatgt aagaaatgcg
     4861 atttattatt cacttaatct tggaaaaggt tgtggtccta caaatcattt tttcaagttt
     4921 ctagatgaaa aataaattag atcttagcct ttatttggtt gctactaagg gaaataaaag
     4981 cgaggagtgt tttttaaata ctttagaaaa tgctataaaa ggcggagtaa gtatcataca
     5041 acttcgtgaa aaagagctta atgcaagaga attttataaa ctaggcttaa aggtgcaaaa
     5101 actttgcaag tcttataaaa tacctttttt gattaacgat agggtggata tagctttagc
     5161 cttagatgct gatggggtgc atttaggaca ggaagattta gaagcaaaat tagctagaaa
     5221 gcttttagga gatgaaaaaa tcataggctt aagtcttaaa aagttagaac aacttgagtt
     5281 tatacaagga gtaaattatc taggttgtgg agctattaag gcaacgccta ctaaagaaag
     5341 ttcgctttta agccttgagc ttttaagtca aatttgtgat aaaagcccta taggggttgt
     5401 agccataggt gggattgaca aagaagcact tgttgagtta aagggtataa atttaagcgg
     5461 tgtggctgtg gttagggcga tcatggatgc taaagatgct tttttggcag ctaaagagct
     5521 aaagcgtaaa atctatgaaa atttatctct taaatgaaac tccttttgaa ggggtggaaa
     5581 atcttatttt aaatgagatt gttttttatg attttagtgt ggatttgagt ttgtatgatg
     5641 ctttaatctg cacttcaaaa aatgctttaa aagctttaca acatgcaaaa atcactttaa
     5701 atttcaaact caatttatac gctgtgggac aaagtacagc tcaatacgct aaaaatttag
     5761 gttttaaaaa gattaaaatt ccatcaaagg cttatggaaa agatcttttt cttgaatgta
     5821 aagaggagtt aaaaatgcaa aaatgtttgt atttaagggc taaaaatatt gtttcaactt
     5881 taaatttgga tcttaaaaat gtaggtgtgg atttagatga aatgattgtt tatgaaaatg
     5941 tttttaaaaa aggcgacaaa aagcttacct atcctgctat ttttatattc acctctcctt
     6001 taagtgtaga aaatttttta aaattttata gcttaaaaga agaagataag gttgtagtta
     6061 tagggcaaag cacagcaaag aagcttttaa attttaaaaa tctttatata tgcgaaaatc
     6121 aaagtctttt agactgtgtt aagctcgcta agactttggt ttaatttttt aaattccaaa
     6181 aattttcttt gggataaata ataatgcttt ttgtgagtaa aatttcatca ttgacgtttt
     6241 tatcacgatt taaagcaata ctaatgtggg ctataataac accatctttg cttaaatttg
     6301 catcgggatt gaagttggaa aatttaaaat taacacattg tgcaatagga taaaaatatt
     6361 ttattttaat caaagctttt gtgtaattaa aatatatatt gtctaaacat tctttatttt
     6421 cttgctttgc ttgatataaa aaatatttag aaaattgtgt tgcattgtga cttaaaattt
     6481 gagcttgaag gtagtaataa ctatcttgga ttatttttgg agtatagctg gatatgttta
     6541 aggtcaagct catccataga cttattagta gtattaaaaa aattgtccaa attaaaacat
     6601 aagctttttt cacagtaaaa ttcttttttc aaggcaatgt tttgtttgtc tttttaggca
     6661 aatttttaat ttattgtttt gcaggttaaa tgagcttatg tttttagaaa ttaatccttg
     6721 ttggtttaat tgttcattaa attttggctt tatttcatat ataagttctt cattttgcaa
     6781 tttgataact aattgagctt gcaaaggaat aaaactacct gtaaaatttg cagatatacc
     6841 attttccaag atagatattt tttcaatctt attaatttta taagcatagc taatatgttc
     6901 attgtcgtta tataaatctt ttctattttg gagttgtgtt ttaaaatcag aatgaggtga
     6961 ataaagtgta tgattatttt ctaaaataag agcagaatta ataagataaa gtttattatc
     7021 ttttaggcta attaactcat cttttaaaag acattttaat gtattctgtg aaaatgtaat
     7081 attaatacaa ttttgtatta atttttctat tttaagcaag tttaaatgtg cttgagtgat
     7141 aagattgttt gtatgtaaag cagtaaaatt taaatgataa aaatccatta aaggttttga
     7201 aagtaagcta gttataaaag taaaaagtat tagtgatatt ataagttcaa aaagtgtaaa
     7261 agctttgctc attctttaaa ataaacgcta taattttgat cttgaaagta taatttttga
     7321 aattgaaata taccatcatt aacaaactgt tcttgtaaaa ctataggttt taaggctgaa
     7381 gtttgaagta tgatggtttt aaaaataggc ttttcatata attcttcttg aagtttatag
     7441 agtctttcaa aaatatttaa attttcatag tttttgtaaa gttgaatata gtaataaaaa
     7501 atgccaatga aaattaaaga tatgatcgtt atagcactaa tgctttctat aagtatgaaa
     7561 gcctttttca tttagcgctg ctagcattta tggcttcaaa aaaacttccg cgaattcctt
     7621 tttgttcgag tatttttatg ccttttactg taactccgcc aggggagcaa atattttctt
     7681 tgataatagc tggatgttca tgttctagta aagcactaga gcttttaaat aaagagcgcg
     7741 taagattgag actaagttct tttgacaaac cttcataaac tccagcatta gcaatgcttt
     7801 ctgctataag tgctaaaaaa gcaggagcgc agccgctaat cgccatagct gcattcattt
     7861 gtatttcatt atctaattta taagccgagc caaaagtttt taaaatgtct aaaatttcat
     7921 tttcgaaatg agagttttta agtatatatg gtgtggttga agccttgtat ttagctgctg
     7981 tattgggtat tattctaaca taattttgag ctttgatggt ttgtagtttt tcaaaatcaa
     8041 cattggctaa aacagagatt aagatacgtg cttgtccttt tagcatttga gcaatatttt
     8101 ctaaagcata aggtttaaat gctaaaataa catctttacc ttctatgtta aaatctttgt
     8161 aaagtaaggt tttaaagcct tctttggtga gggcttgaag tttttctata cttcttccta
     8221 ctatacaaat ttcataatca tcttttaacc cataggctaa ggctgttgcc atagatccat
     8281 ttgcaagtat atagagcatt attttttaat ataattagca atttgatcag cttgaaaaaa
     8341 gtcgggataa ttaactgtat ctagtatcac ttgtaccata gtattattat caagattaat
     8401 gactactgga gctagaaaat tcactgtcga ttcttcaatg ctttttgcta tggctactat
     8461 attaaaaatt ttcatattag attcaggtgt taaagaaaga agctcttgat aataagttgg
     8521 tatatcaaat tcataatcag gtctaatcaa ataaggatta attaaaacaa aagaaaagtc
     8581 tttaccatca agacttttaa gtcttacaaa tacttcatcg atagttgaaa attccatatt
     8641 tttggtttct tcaaaaccta agatagggca tttaacagct agggtcatgt tttctcctca
     8701 agttataatg tttaatattt taacataaaa taagcaataa tcattccaaa attttaaatt
     8761 atttaattaa ttttattata attttagaag aacataatta taaaatcgtt aaaatatata
     8821 tttttgagaa tataaatcaa ggtgaagtat gaaaaaaggt
//
LOCUS       DAPOLW010000064         8859 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.064, whole genome shotgun sequence.
ACCESSION   DAPOLW010000064 DAPOLW010000000
VERSION     DAPOLW010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8859)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8859)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8859
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.064"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..1135)
                     /locus_tag="ROE18_001049"
     CDS             complement(<1..1135)
                     /locus_tag="ROE18_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002924539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651231.1"
                     /translation="MAFYNPQRVVFNPDTGVIQNAGKVGGVLYDIMSKSFDDKVKANE
                     FQQEQDLRKQQMEFNQAMQNNQLLQNERNFDYQKERANIADQQWQMNYNQRARQYAMQ
                     NALRQQAINARQQKDEILAGQAILNLPSYTKSNPEMRAIQERFNTIKKGGGDSYYDGQ
                     GLFGGTWQNIKGLFGGDNINDAQDSLFKFISDSIYNEKVRRDTNYNRTRHDEIYKEPS
                     AWKAQTINAKEYEKAIRDYIATSEAKINAYYDEQMAKISNLKNPYINNLYEEQRQKDL
                     KYFREGLAKDLESYYIKDEISNKPSKNAVIIDNSTTNQNIQNDLAKNILEVQNQNTPK
                     LHSVSFNGINAQISEPDANGNVILVNQAGRKMQVSVEELKKQGL"
     gene            complement(1400..1780)
                     /locus_tag="ROE18_001050"
     CDS             complement(1400..1780)
                     /locus_tag="ROE18_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651232.1"
                     /translation="MDFITALKGGTGLGSSFADTLMKTSNFTPNLASSSSGFLNGLKN
                     SFSNFGDWLFKSSDANKVTNFDRLGNVLGGAGALYGAYNQQKMAQKNYELQKDAYNFN
                     KYLANEELNRRKNMENKLQNVWSN"
     gene            complement(1791..2438)
                     /locus_tag="ROE18_001051"
     CDS             complement(1791..2438)
                     /locus_tag="ROE18_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651233.1"
                     /translation="MENDALKDLINVITDDDKGQVANNGDEPTQVEDNEPMQVANENE
                     PDYKAMFEAYKSENDNKLNALMSELEVLKNPKKEPSEQELQREQYLKELGLDGLDEKL
                     KRLEELDKKQKDKEEQDALIAKYAQVESELRKAYPDADLKAMAELATKLNGLGEGNID
                     SWKTLLNLVGKSNNAKKAEDLSSANNNVRTSDFNDKLKKGEVSEIDLGKELLSLV"
     gene            complement(2428..2631)
                     /locus_tag="ROE18_001052"
     CDS             complement(2428..2631)
                     /locus_tag="ROE18_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651234.1"
                     /translation="MLNIEIKSDISKTKGGKKLIDFIKAKYSECFYIAKNNDEKELRL
                     KALDTMAFLDIIINKIKDEEDGK"
     gene            complement(2624..4162)
                     /locus_tag="ROE18_001053"
     CDS             complement(2624..4162)
                     /locus_tag="ROE18_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002847437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651235.1"
                     /translation="MKTKRTNDERVSFLTQLISESKSGYENYKPHFKELQDAYLLENK
                     VMQKLRKRNKSSIYIPKINAKVKYLITSLNDVYFNSERMADIETYINSDDTIIELWQN
                     AIDFYSGKINMFKIFQPLFLDVLLVGTSIAKVTWHKGMPRIERVDIDSIFFDPNALNS
                     EDVGYIVNEIYLTYNQIYERQKLGFYKKIEIEKLFDEDDEYKKVKLYDIYERKNDDTW
                     VVSTLFENNLLRNEVTLQDGQPFVWGSMLPQLKKIDNENYVSAYGEPIMASAMPLQDE
                     INITRNLLIDAVRTHIMPKIMMPKSMGVSREDIETLGKPIYTDDPKGVQILPPPNVNS
                     AGMNLQLLESELTEVTGVSPQNNGAQTAQNETATEISIKAQEGGRRSADYIRQYNETF
                     IEPLFDRFAMLVFKYGEDNFFNGFQREDIPSFRFKIQTGTGAMNKEVRRAGIQASMQV
                     FSQLYQMYMSIGDANSAYGIINASKELTKELLPILGVKNVNSLFAFENNEDINPQMQG
                     EANA"
     gene            complement(4143..4415)
                     /locus_tag="ROE18_001054"
     CDS             complement(4143..4415)
                     /locus_tag="ROE18_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002924542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651236.1"
                     /translation="MAGEFLMIYDAIDVNKIKKISNLSDDAIKSSLANEFLELVSGFN
                     NISKKKFKREFAEFLFEKGVNEKDILKITNLSKTTIWRIMNENKKN"
     gene            complement(4405..5697)
                     /locus_tag="ROE18_001055"
     CDS             complement(4405..5697)
                     /locus_tag="ROE18_001055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651237.1"
                     /translation="MKLKIDFSYTPAQLKVFDDKNPRFITVAKGRRLGFTRGSAKFVI
                     ENLLLGQNVLWVDTIQANLQNYYELYFTPELKNLPKDFYSWSVQDKKLIINGAVLHMR
                     SAERSENIEGFGYDLVILNEAGIILKGSKGEYLWYNAIRPMLLDNPKSRAIIGGVPKG
                     KNLFYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEF
                     IDSSSAELFSLSEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYE
                     IKKYSQLGTIELANKILAEYNQSEDKPKGIFIDTCGLGVGVYDVLLNYGLPVFEANSA
                     NSATSNEYLNKRAQMYFTFAKNLKHMELFKDEELKKDMRMIEYEYSDKGLLKIVSKEQ
                     LKKNYGKSPDVSDAVALTFFEKLYSRNNTNEDWSYDGW"
     gene            complement(5694..6080)
                     /locus_tag="ROE18_001056"
     CDS             complement(5694..6080)
                     /locus_tag="ROE18_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651238.1"
                     /translation="MARMMTNGKSMTKEELVSKIESYFNERVVLKETKESIIFAPKTK
                     VGLAVYLGITIQTLGEWEKDKDFGEIVSQAKQKCEMDILNHSLIGTYTPSVSMFLLKN
                     QHGYVDKQEVVSDNVQKIEIIRSEIK"
     gene            complement(6080..6460)
                     /locus_tag="ROE18_001057"
     CDS             complement(6080..6460)
                     /locus_tag="ROE18_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651239.1"
                     /translation="MEKYILKIDLKSNPVPYKRTTQRSKFACKDYLKYLDFKKLLQME
                     FRRQNNISCFQAFDKQKKYEFSLKIGFNSKRHGDGDNIVKCVLDALFENDKNVLKGDY
                     EIISFKKSFLNLEIKEFDFKEGVA"
     gene            complement(6478..7128)
                     /locus_tag="ROE18_001058"
     CDS             complement(6478..7128)
                     /locus_tag="ROE18_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651240.1"
                     /translation="MQEKIQILMDLLEINKAQATDIVGRYLQDAKDIHAFLDFYFETL
                     ERENIVGTTYEKLRRVCKRAEIEFKKRFEDKEIFLEWLKNKYKNSPFFRLLESDFKYS
                     YVCYDGQGNLFKRLAKSINMLVCLNNFGELTYEDGEMLKNNEFKHALIDFIFKNQERI
                     GKDIYINTSYKIKGYTSLSHEEEYNNFKKVQKKFFKENQEEFQKKVKVKMAFKNIS"
     gene            complement(7139..8140)
                     /locus_tag="ROE18_001059"
     CDS             complement(7139..8140)
                     /locus_tag="ROE18_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002929405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651241.1"
                     /translation="MILNFIASFDVALWRKSLRERKGYLKLSNTIAYGGLSVDALALY
                     IQLAKLSEKTIVSEIYLREFIKVKNNQRISLNRLRIAKKELIELRLLEIKKVRNGSLN
                     FYEWILKDENYQVKKHFNKSLSLLKNSDEKLSKTLKNNTSSIDRKLTTENEKKENLHY
                     IETHTHARDNKFINNININNNKFIKKENLENLKNNQEKKERVSNQNASFVTSFIDFSK
                     KELEKMAKKEFKVPNANELMRQIIAFNEKNGTNFGEELANDFIGYWDAREWKRNGKRM
                     SSVAGSLYTWLKYAKENEARKNQRFNRKKEANPSVVDSLMEYYGMKDENKNKLLGCF"
     gene            8183..8548
                     /locus_tag="ROE18_001060"
     CDS             8183..8548
                     /locus_tag="ROE18_001060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651242.1"
                     /translation="MFNSFLSEMLKTATLENLLYFLIGVLFGLSIRPLFLYLTKKQKL
                     KRVCIKDMKLENDLTKRLYPNLGYKLVTKKTPFEMVFKKDKFKYIICPHYRDKKCVLD
                     NDKCKILKSQPKYQPLETV"
BASE COUNT         2611 a         1644 c          984 g         3620 t
ORIGIN      
        1 ttaatccttg tttttttaat tcttctacgc taacttgcat ttttctacct gcttgattaa
       61 ctaatattac attaccatta gcatcaggct ctgatatttg agcattaatt ccattaaaac
      121 taacgctatg taattttggt gtattttgat tttgcacttc taatatattt ttggctaaat
      181 cgttttgtat attttgatta gttgttgaat tatctataat tactgcattt ttactaggtt
      241 tatttgagat ttcatcttta atgtaataag actcaagatc ctttgccaat ccctctctaa
      301 aatattttaa atctttttgt ctttgctctt cataaagatt attgatgtat ggatttttta
      361 aattagaaat ctttgccatt tgctcatcat aataagcatt aatcttagct tcactagtgg
      421 ctatataatc ccttattgct ttttcatatt ctttagcatt tatagtttga gctttccaag
      481 ctgaaggctc tttgtaaatt tcatcatgcc ttgttctatt atagtttgtg tctcttctaa
      541 ccttttcatt ataaatacta tcgcttataa atttaaataa gctatcttga gcatcattta
      601 tattatctcc accaaaaagt ccttttatgt tttgccatgt tccaccaaaa agaccttgcc
      661 catcataata agaatcacca ccaccttttt ttatggtatt aaatctttct tgtattgctc
      721 tcatctcagg atttgacttt gtatagcttg gtagattaag tattgcttgg cctgctaaaa
      781 tttcatcttt ttgctgtctt gcatttattg cttgctgtct taaagcattt tgcatggcat
      841 attgtctagc tctttggtta taattcattt gccattgctg atctgctata tttgctcttt
      901 ccttttgata atcaaagttt ctctcatttt gcaaaagctg attattttgc atagcctgat
      961 taaattccat ttgttgcttt cttaaatctt gctcttgctg aaactcatta gctttaactt
     1021 tatcatcaaa acttttgctc atgatgtcat ataagacacc accgactttt cctgcgtttt
     1081 gtataacgcc tgtatcagga ttaaatacta ctctttgtgg gttataaaat gccattttgt
     1141 ttcctttatt ctttctttta aaataaagga tttaaggaag tttgtgtata attttaaaag
     1201 gtgtggtgcc aagggtcgcc acccttagca ctaaattacc acctagaaag gcggtgaaat
     1261 aagatgctac aaatcttaat agttattata ctactttgta ttattgttgt caatgcaaat
     1321 taacaatcaa taaacaaagc cccttataca aggggttaag atttaccctt taaaacaaac
     1381 tccttaaatc caaatctatt taattactcc aaacattttg aagtttattt tccatattct
     1441 ttcttctatt taattcttca ttagctagat acttattgaa gttataagca tctttttgta
     1501 gctcataatt cttttgtgcc atcttttgct gattataagc accatataaa gcaccagcac
     1561 cgcctaaaac atttcccaat ctatcaaaat tagttacttt atttgcatca gaacttttaa
     1621 ataaccaatc tccaaaatta ctaaaagaat tttttaatcc atttaaaaaa ccactactgc
     1681 tacttgctaa atttggagta aaattacttg ttttcatcaa agtatctgca aagctagaac
     1741 ctagccctgt accacctttt aaagctgtta taaaatccat aatttctcct ttatactaaa
     1801 cttaataatt ctttacctag atctatctcg ctaacttcgc ctttttttaa cttatcgtta
     1861 aaatcactag ttcttacatt attatttgca cttgataaat cttcagcttt tttggcatta
     1921 tttgattttc cgaccaaatt aagcaaggtt ttccagctgt caatattccc ttcgcctaaa
     1981 ccatttaatt ttgttgcaag ttctgccata gcctttaaat ccgcatcagg ataggctttt
     2041 cttaactcgc tttctacttg tgcgtattta gcgattagtg catcttgctc ttctttgtct
     2101 ttttgctttt tatcaagctc ttcaagcctt tttaatttct catcaagtcc atcaagtcct
     2161 aattctttta aatactgctc tctttgtaat tcttgttcgc ttggctcttt ttttggattt
     2221 tttaaaactt caagctcact cattaaagca tttaatttgt tgtcattttc acttttataa
     2281 gcttcaaaca tcgccttata atcaggctcg ttctcattag caacttgcat aggttcatta
     2341 tcttctactt gcgtaggttc atcgccatta ttagcaactt gtcctttatc atcatctgtt
     2401 atgacattta ttaaatcttt taaagcatca ttttccatct tcttcatcct ttattttatt
     2461 gattattatg tctaaaaaag ccatagtatc taaagctttt aaccttaact ctttctcatc
     2521 gttatttttt gctatataaa aacattcact atattttgct ttgataaaat ctattaattt
     2581 ctttcctcct ttagttttag atatatcact tttaatttca atattaagca ttagcttctc
     2641 cttgcatttg tggattaata tcttcattat tttcaaaagc aaataaacta tttacattct
     2701 ttacacctaa aattggtaat aattctttag taagttcttt gctagcattt ataatcccat
     2761 aagcagaatt tgcatcacct atactcatat acatttgata taattgtgaa aacacttgca
     2821 tactagcttg aattcctgct cttctaactt ctttattcat ggcacctgtg ccagtttgaa
     2881 ttttaaatct aaaactaggt atatcctctc tttgaaaacc attaaaaaaa ttatcttctc
     2941 catacttaaa aacaagcatt gcaaatctat caaataaagg ctctataaaa gtttcgttat
     3001 actgtcttat gtagtcagca cttcttcttc caccttcttg tgcttttatg ctaatttctg
     3061 ttgctgtttc attttgtgca gtttgagctc cattgttttg tggactaact cctgtaactt
     3121 ctgtgagttc gctttctaaa agctgtaaat tcattcccgc actatttaca tttggtggtg
     3181 gtaatatttg cacacccttt ggatcgtctg tatatattgg ttttcctaag gtttctatat
     3241 cttctctgct tactcccatt gattttggca tcattatttt aggcatgata tgagttctta
     3301 ctgcatctat taaaagattt ctagttatat taatttcatc ttgcaaaggc atagcagaag
     3361 ccattatagg ctcgccataa gcacttacat agttttcgtt atctatcttt ttaagttgtg
     3421 gtagcattga accccagaca aaaggctgtc catcttgcaa agtaacttca tttctaagta
     3481 aattattttc aaataaggta gaaaccaccc aagtatcatc gttttttctt tcataaatat
     3541 cataaagctt cactttttta tactcatcat cttcatcaaa aagcttttca atttctattt
     3601 ttttataaaa ccctagcttt tgtctttcat agatctgatt ataagttaga taaatttcat
     3661 tgactatata gcctacatct tcactattta atgcatttgg atcaaagaat atactatcaa
     3721 tatccactct ttcaatgcgt ggcattcctt tatgccaagt aaccttagct atacttgttc
     3781 ccacaagtaa aacatctaag aaaagcggtt gaaaaatctt aaacatattg attttaccac
     3841 tataaaaatc aattgcattc tgccatagct ctataatcgt atcatcgcta ttaatgtaag
     3901 tttcaatatc tgccattctc tcactattaa aatacacatc atttaagcta gtgattaaat
     3961 actttacctt agcgtttatt tttggtatgt agatacttga tttatttctt tttcttagtt
     4021 tttgcattac cttattttca agcaaataag catcttgcaa ctctttaaag tgtggtttgt
     4081 aattttcata tccactttta ctttcgctaa tgagttgtgt taaaaacgac actctctcat
     4141 cattagttct ttttgttttc attcataatt ctccatattg ttgttttgct taaatttgtt
     4201 atttttaaaa tatctttttc attcactcct ttttcaaata aaaactccgc aaattctctt
     4261 ttaaatttct ttttagaaat attattaaat cctgatacaa gttctaaaaa ctcattagcc
     4321 aagcttgact ttattgcatc atcacttaag tttgaaatct ttttaatctt atttacatca
     4381 attgcatcat agatcattaa aaactcacca gccatcataa ctccaatctt cattagtatt
     4441 gtttctgctg tatagttttt caaaaaaagt taatgccacc gcatcgctaa catcaggact
     4501 tttgccataa ttctttttta attgttcttt tgaaactatc tttaaaagcc ctttatcgct
     4561 atattcatac tcaatcattc tcatatcttt ttttaattct tcatctttaa aaagctccat
     4621 gtgttttaag tttttagcaa atgtaaaata catttgcgct cttttattta agtattcatt
     4681 actggttgca gaatttgcag aatttgcctc aaatacaggc aaaccataat ttaacaagac
     4741 atcatatacg ccaacgccaa gaccacaagt atctataaaa ataccttttg gtttatcttc
     4801 gctttgattg tattcggcta gtattttgtt tgctaattct atagttccaa gttgtgagta
     4861 ttttttaatc tcataaatta caaaaccttt tctttttgct aaagcactct tatcatctcc
     4921 atatcttgct acatcaagcc cccaaatatt ctcgccttgc attttttcaa tactaaaaga
     4981 gttcttgctc atcgcatttt caatttcact tagagaaaat aattcagcac tcgagctatc
     5041 tataaactcg ccataaattt cttgcttgac aacttcacta ccttctccgc ctacttcttc
     5101 aattaattct ttaatttgct cttcttttaa aaatggatta tcatagcttg aaaattgaaa
     5161 atgtttccaa tttttatcgc tgagttcttt tctacatagc tcgtaaaata gattttttcc
     5221 tttaggaact ccaccgataa ttgctcttga tttagggtta tcaagcaaca taggtcttat
     5281 ggcgttatac caaagatatt ctcctttgct gccttttaaa ataattcctg cttcgtttaa
     5341 aataacaagg tcgtatccaa aaccttcgat attttcactt ctttcagcac ttctcatatg
     5401 aagcactgct ccattaataa ttagtttctt atcttgcaca ctccatgagt aaaaatcttt
     5461 tggcaagttt tttaactcag gtgtaaaata taactcgtaa taattttgta aatttgcttg
     5521 tatggtatcc acccataaaa cattttgtcc taaaagcaag ttttcgataa caaacttagc
     5581 acttcccctt gtaaaaccaa gtcttctgcc ctttgctaca gttataaagc gtggattttt
     5641 atcatcaaaa actttaagtt gtgccggagt gtaagaaaaa tcgattttta atttcatttg
     5701 atttcacttc ttataatttc aattttttga acgttatcgc taactacttc ttgtttatcc
     5761 acgtagccat gttgattttt tagcaagaac atactaacgc taggagtata agtgccgatt
     5821 aaggaatggt ttaaaatatc catttcacat ttttgcttag cttgagatac aatttctccg
     5881 aaatccttat ccttctccca ctcgcctaaa gtttgtattg taattcctaa atacacagct
     5941 aatcccactt ttgttttagg tgcaaaaata atactctcct tagtttcttt taagacaact
     6001 ctttcattaa aataactctc tatttttgaa acaagctctt cttttgtcat acttttgcca
     6061 tttgtcatca ttctagccat taagccaccc cttctttaaa atcaaattct ttgatttcta
     6121 agtttaaaaa agatttttta aaactaataa tctcataatc gccttttaaa acattcttat
     6181 cgttttcaaa taacgcatct aacacgcatt ttacgatatt gtccccatcg ccatgccttt
     6241 tgctgttaaa tcctattttt aaagaaaact catatttctt ttgcttatca aaggcttgaa
     6301 aacagctaat attattttgt cttctaaact ccatttgcaa gagtttttta aaatctaaat
     6361 atttaagata atctttacat gcaaatttag atctttgcgt ggttctttta taaggaactg
     6421 ggttgctttt taaatcaatt tttaaaatat acttttccat ttcagacttt cttaaattta
     6481 gcttatattt ttaaaagcca ttttgacttt tactttcttt tgaaattctt cttgattctc
     6541 cttaaaaaat tttttctgta ccttcttaaa gttattatat tcttcttcat ggcttaaaga
     6601 tgtatatcct tttatcttat aagaagtatt tatatatata tcttttccta tgcgctcttg
     6661 atttttaaat ataaaatcta ttaaagcgtg tttaaattcg ttatttttta gcatttctcc
     6721 atcttcgtag gttaattctc caaaattatt tagacaaacc aacatattaa ttgattttgc
     6781 taatcgttta aaaaggttgc cctgtccatc ataacaaaca tatgagtatt taaaatcact
     6841 ttcaagcaat ctaaaaaatg gactattttt atatttattt tttaaccatt ctaaaaaaat
     6901 ttctttgtct tcaaaacgct ttttaaactc gatttcagct cttttgcaaa ctcttcttaa
     6961 tttctcatag gttgtcccta cgatattctc tctttctaaa gtttcgaaat aaaaatctaa
     7021 gaaagcatga atatcctttg catcttgcaa atatctacct actatatcag ttgcttgagc
     7081 cttattaatt tccaataagt ccattaaaat ttgtattttt tcttgcattt tttactcctt
     7141 aaaagcatcc taagagcttg tttttgttct catctttcat tccgtaatac tccatcaagc
     7201 tatcaaccac actaggattg gcttcttttt ttctgttaaa acgctgattt tttcttgctt
     7261 cattttcttt agcgtattta agccatgtat aaagacttcc tgccacactt gacattcttt
     7321 ttccatttct tttccattcc ctagcatccc aatagcctat aaaatcatta gccaactctt
     7381 caccaaagtt tgtgccattt ttctcattaa aagctattat ttgtctcatg agttcatttg
     7441 catttgggac tttaaactct ttttttgcca ttttctctaa ctcctttttg ctaaaatcaa
     7501 taaagctcgt cacaaaagag gcgttttgat tagaaacgcg ttctttcttt tcttgattat
     7561 tttttaaatt ttctaaattc tcttttttta taaatttatt attattgata tttatattat
     7621 ttataaattt attatcacgt gcgtgcgtgt gtgtttctat ataatgcaaa ttctcttttt
     7681 tttcgttttc agtagttaat tttctgtcga ttgatgaagt gttattttta agagttttgc
     7741 ttagcttttc atcactgttt ttaagcaaag ataaagattt gttaaaatgc tttttaactt
     7801 gataattttc atcttttaaa atccactcat aaaaatttaa agagccattt ctaacctttt
     7861 taatttctaa aagtctgagt tcaattaatt cttttttagc aattcttagt ctatttaaac
     7921 taattctttg attattttta acttttataa actctcttag atagatttca cttacaatcg
     7981 ttttttcact aagctttgct aattgaatat acaatgccaa agcatcaaca ctaagaccac
     8041 cataagctat agtgtttgat aatttcaaat agccttttct ctctcttagg cttttacgcc
     8101 acaaagctac atcaaaactt gctataaaat ttagtatcac caactctcct ttatgttata
     8161 atttaaatta aaaaggtttt ttatgtttaa ttctttctta tccgaaatgc taaaaaccgc
     8221 cactttagaa aatttgttat attttttaat aggtgtttta tttggtttaa gtatccgtcc
     8281 tttgttttta tatttaacta aaaaacaaaa actaaaaaga gtttgtatta aagatatgaa
     8341 gctagaaaac gatttgacaa aaagactata tcctaactta ggatataaat tagttacaaa
     8401 aaaaactcct tttgaaatgg tttttaaaaa agataaattt aaatacatta tttgtcctca
     8461 ctaccgtgat aaaaaatgcg ttttagataa tgataaatgc aagatattaa aatcccagcc
     8521 gaaataccag ccactagaaa cagtctaaaa tgcaacatca tcaaagtaaa aataaataat
     8581 cctattattt caaataccct atcaagcatt aatcatccta aaagattttc caaattaaaa
     8641 aataaactaa aaaacctatt gaaaatcccg ctataaaagc cattttttaa cctttagttt
     8701 aatcgccttc attctctatc ctttcgcttt ctcccacgct taggtatgtt tataagattg
     8761 ctacgaacat ccacccaaaa ttcatgaggt attccataga gttttttaaa ctctatttgt
     8821 tttttaaagc ttgggcgtga tttatttgtt ctaatcttt
//
LOCUS       DAPOLW010000065         8819 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.065, whole genome shotgun sequence.
ACCESSION   DAPOLW010000065 DAPOLW010000000
VERSION     DAPOLW010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8819
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.065"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..241)
                     /locus_tag="ROE18_001061"
     CDS             complement(<1..241)
                     /locus_tag="ROE18_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HDX3651243.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKSLKELLSLPKIKNYYGDDFAKIYNIDI"
     gene            complement(246..770)
                     /locus_tag="ROE18_001062"
     CDS             complement(246..770)
                     /locus_tag="ROE18_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HDX3651244.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDMISDSRFNCTQCHVPQSDAKPLVGNSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            complement(767..1549)
                     /gene="napH"
                     /locus_tag="ROE18_001063"
     CDS             complement(767..1549)
                     /gene="napH"
                     /locus_tag="ROE18_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HDX3651245.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRLFNTIPLS
                     DPFAVLQIILASWSIDLMALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            complement(1546..2286)
                     /gene="napG"
                     /locus_tag="ROE18_001064"
     CDS             complement(1546..2286)
                     /gene="napG"
                     /locus_tag="ROE18_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HDX3651246.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLALKADDNYALRPPGAEN
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFNVKKATNYLNDGEL"
     gene            complement(2304..5075)
                     /gene="napA"
                     /locus_tag="ROE18_001065"
     CDS             complement(2304..5075)
                     /gene="napA"
                     /locus_tag="ROE18_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HDX3651247.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEDWKWDKAVCRFC
                     GTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNEK
                     GEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLAK
                     AGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHPI
                     LWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYNH
                     PEAMDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEATS
                     LSYLGVKAGDKFEMKHQGVADKNWEISFDEFKKGLAPYTLEYTARVAKGDDNESLEDF
                     KKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAFS
                     LTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLNI
                     MRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKVADLIL
                     PSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKVD
                     NKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNPNDAIAKGFDNTDVKGDERKI
                     QGSDGKEFTGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQW
                     RFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFMK
                     APERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQG
                     DLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDFK
                     KCAVKIYKA"
     gene            complement(5322..5849)
                     /gene="tpx"
                     /locus_tag="ROE18_001066"
     CDS             complement(5322..5849)
                     /gene="tpx"
                     /locus_tag="ROE18_001066"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HDX3651248.1"
                     /translation="MSTVNFKGNPVKLKGNSVEVGADAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVIVVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLINEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            complement(5948..6688)
                     /gene="peb2"
                     /locus_tag="ROE18_001067"
     CDS             complement(5948..6688)
                     /gene="peb2"
                     /locus_tag="ROE18_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HDX3651249.1"
                     /translation="MKKILILSLAAASFLNAEILVYGPGGPAPVLKELALKFEEKTKE
                     KVIVTAGPTPAWINKAKENADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIV
                     RPNNPKNIKNFEDILKDGINVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAK
                     NSKAAVDEWNNNPNIDALIIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKGLEN
                     KKALEFVDFIKSKEAQKVWKKYTWKEVK"
     gene            complement(6729..8759)
                     /locus_tag="ROE18_001068"
     CDS             complement(6729..8759)
                     /locus_tag="ROE18_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HDX3651250.1"
                     /translation="MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLS
                     KGVAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIA
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNY
                     EDQSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEEKYEFDEILVDEYQDT
                     NTLQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLG
                     LFADLEELASETRFKFESEFDAHPILKLSKINDLCARNLEKIYLFLKKAMEIKHSLTL
                     VNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI
                     YKYYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
BASE COUNT         2921 a         1761 c         1091 g         3046 t
ORIGIN      
        1 aaatatcaat gttgtaaatt ttagcaaaat catcaccata ataattttta atctttggca
       61 aagataaaag ttcttttaaa cttttatctt taatgttata ttgcaaaatt tcacctttat
      121 cagtgcctat atataagttt tgcttatcaa gctttaaagc tgttatattg gcatttaatt
      181 tcagctcata agcataagac aaaacacaaa aaagactcaa aataaaaaga aattttttca
      241 tttatttact ttacaccctc attaatcaca tcaattaaat ttgaacgact ttttaattgt
      301 tcatttttaa attcaggttt aaagctattt cccactaaag gttttgcatc actttgtgga
      361 acatgacact gagtgcaatt aaaacgacta tcgctaatca tatctcctgt ggttttattg
      421 tgtctaaaat cataataatg actagcagga agtggagttg caccagcatc tgctgctata
      481 gccttatcat ggcagcttaa gcacatattg ttatctttag ttataggtaa caaatcttca
      541 atagcatgcg gaattaatgg tggtgcattt tcataagaac gctcaaaacg agtagattcc
      601 ccaggctgta aagttgtgaa atttgcctcc actaaattta ctttattttc attttctaaa
      661 cttgcttttc taagtccaat ttgttctgaa cttaccccac tattcattgc acaagcggca
      721 aaaaatacca ctgcagcact tcctaataaa accaatttct tcttcatcat ttattcctta
      781 aatcaaaaat attaaaattc aaagcatcat cattacaaac ttctatacat cttgcacacc
      841 ttatacactc tcctgatttc acgctagtac tttcttttcc aaccatccac aaaacctgtt
      901 tttcaggaca aatacggata cattcataac atttagtgca tttatcacta tcatgcttta
      961 ttttaagcaa agcaaaacga gaaataaaag cataaaaagc tcctagtgga caaaaatgtg
     1021 aacaaattgc cctaggactt aaaaaagtat cgatacaaaa aagtataaag gctacaaaaa
     1081 tccaagaact tgtagcaaaa ataatccctc tatgtatcat tcctatataa gaaaaacttt
     1141 caaacacagg caatgaaaat acaaaagaaa ggactaaaac caagaccaat acaaaatagc
     1201 gtaaattttt aggcaaaatt aaaaatttat tattaagggt taatttattt cgcacaaaag
     1261 cagcaaaatc tgtgattaaa ttaacaggac aaacccaaga gcaaaaaacc cttcctaaaa
     1321 gcaaaccata gataaaaaat ataatcaaag ctcctattaa agccattaaa tctatactcc
     1381 agcttgctag aatgatttgc aaaactgcaa aaggatcact taaaggtatg gtattaaaaa
     1441 gtctagaaga acttaaattt ccctgcaaga taaaatctgt agctttaaaa ctaaaaagcg
     1501 ctaaaattcc aagctgaacg atgcgtctag caattaaata cttcatcaca gttctccatc
     1561 atttaaataa ttggttgctt ttttaacatt aaaatgtttt gaagtatctg cattttttat
     1621 acgaccttca tctttttcat cccagccttt tacataatga gatcctgctt ttcccaatac
     1681 atactccctt ggcaaaacac gaatggccgg tttttcagta atacaagcca gttcacaaag
     1741 cccacaacct acacacactt catgatccac actaggtagt aaaaaagcat gtttggcggt
     1801 gcgttcattg cgtttaagct caagttttaa agccctatct atcaaaggac aagctctata
     1861 acaagcatca cattgaattc cccagtgtgc cacacaagaa gcactatcaa caatagcaat
     1921 acccattttc aaagattcta taccctgctc taaatgcttt ttatctaaag catcagttgg
     1981 acattctcta atgcaaggaa tatccttgca aagataacaa ggaatttctc ttgccttaaa
     2041 aaaaggcgta ccattttttg gactatctaa caagctagca agctttaaag tatcataagg
     2101 acaggctttt acacaaagcc cacaacgaat acatttactt aaaaatctag cttcattttc
     2161 agccccagga ggacgcaagg cataattatc atcagctttt aaagccaaat tagccaaaaa
     2221 tccacctcct gtacataaac atgcagcctt aaaggcacta acgaaaaatt ctcttctacc
     2281 tttcatttaa tcaaaaccct aaattaagct ttataaattt ttacagcaca ttttttaaag
     2341 tcagtttgtt ttgaaagcgg acaagtcgca tccaaagtaa ctttattgat atatacattc
     2401 tcatcaaacc acggcacata cacaagtcct acaggcggtt tgtttcttcc acgcatatct
     2461 actcttgctt ttactttacc acgacgagat tccacccaaa ccaaatcacc ttgatttaag
     2521 cctaatttct ctccatcttt ctcactcata tagcaaagtg cttcaggcac agcacggtaa
     2581 agctcaggca cacgcatagt catagttcca ctatgccaat gctctaaaac ccttcctgtt
     2641 gcaagccaga acggatactc tttacttggt ctttcaggtg ctttcataaa tggcctaaag
     2701 aaaattttag ccttattttt aatactgtgc tctttttcat ctttaggagc tattaaatcc
     2761 ccatttgtaa gcattttgtt aaaatcacca taaaaagcaa aatctgaatt tggagccgct
     2821 tttttagcat aataatcaaa tttagtatta aatctccact gtgtttcctt gccattaacc
     2881 acaggccatc ttaaacccct tactttatga taggtatcaa aatccgctaa atcatgtccg
     2941 tgtcctaagc caaatttacg atattcttcc caaaggtatt tttgaacgaa aaagccatag
     3001 cctgtaaatt cttttccatc actgccttga atttttctct catcaccttt aacatcggta
     3061 ttatcaaagc cttttgcgat agcatcgttt ggattaaagc tttttgcttc tttattggca
     3121 aatagcacat caaaaagtgt atcatcttcg ctataaccca tagcttttgc ctcttctaaa
     3181 acgcttggca aggtaagctt attatccact ttttgctctt tccaaacttc tttaagctta
     3241 aagcgttttg caaattctaa aatttgccaa gtatcactca tggcagcacc tacaggtaag
     3301 acttgttgtt tccaatgttg agttcttctt tcagcattac cataagcacc ccatttttca
     3361 taaatcatag cgcttggtaa aataagatca gctacttttg ctgaaattcc aggataacaa
     3421 tcacttacaa caataaaatt atccatttct cttgctgctg caatccagtg atttgcattt
     3481 gcagtgtttt gccatggatt attcacttgc acccatgcaa atttaatttt tccatcttct
     3541 aaatctctca tgatattaag ataaggagaa cctggttttg ggttgatagt ctttgcagga
     3601 actttccaaa ttttttcaga aatttctctg tgttttggat tggctacaac catatctgca
     3661 ggcaaacgat gtgagaaagt tcctacttcc ctagctgttc cacaggcact tggctgtcct
     3721 gttaaagaaa aggctccact acctggttta gcttgctttc ctagcaaaaa atgtaccata
     3781 taagcttgtt catttaccca agaacctctt gtgtgttgat taaagcccat agtccaaaaa
     3841 cttacgactt tgcgattttt ctctatgtaa agattagcta attcttgaag ttttttctta
     3901 aaatcttcca aagactcatt atcatcacct ttggctactc ttgcagtgta ttctaaagta
     3961 taaggggcta aacctttttt aaattcgtca aaagaaattt cccagttttt atcagccaca
     4021 ccttgatgtt tcatttcaaa tttatcaccc gctttaacgc caagataaga taaagaagta
     4081 gcctcttcat cgtctaaagt gattacattt tctttttcaa ccgtatcttt ttcactttct
     4141 ttaaattttg gatgatttgg attatttctc ataccataac caatatcagc ataaccagtt
     4201 gcaaatacgc agtgatcttt gataaatttc atatccatag cctctggatg attataaaca
     4261 atctctcttg ctatgtagtt ccaaatagcc aaatctgtat ttggtttaaa aataatttca
     4321 atatcagcaa tatttgaagt acggttagaa aaagtgctta gattaacaac tttaacctta
     4381 tcaagattgc ttagttttct atcacttact cttgaccaaa ggattgggtg catttcagcc
     4441 atattagctc cccaagtgat aatagtatct gtaagctcta tatcatcata acagcctgat
     4501 ggctcatcta caccaaaagt ttgcataaaa ccaaccactg cagaggccat acaatgtctt
     4561 gcatttggat cgatattatt tgttctaaaa cccgcttttg caagctttaa agcagcataa
     4621 ccttcttgga tagtgtattg cccactacca aaaatcccta tacctgtaac gccgagttca
     4681 ttgtaggctt ttttaaattg tttttccatt tcatcaaagg ctctttgcca agaaacttgt
     4741 tgaaatttgc cttttttatc aaattcgcct ttttcattca tgcgaagcaa aggcataaca
     4801 agacgatctt caccatacat gatcttagca ttaaaataac ctttgataca attaagtccg
     4861 cgatttacgg gtgctgcagg atcacctttt gttgctacga ttttgccatc ttttctagct
     4921 atcataattc cacagccagt tccacaaaat ctacaaacag ctttatccca tttccaatct
     4981 tcttgcgcgc caagcataga gcttggaaca ctaagccctg caacactagc agcacttgca
     5041 atagcggtat ttttaataaa atcccttcta ttcatcctta ttcctccaaa ataaaaaaat
     5101 catcttatta taaaaaatga agtataaaaa tctcttgaaa ttttaataaa aataataatt
     5161 ttaaagctct attttatagg agttttattg tcctttttat attattctta cacaaaataa
     5221 atattaaaaa taatcaactt aacaattaaa atataatcaa cttaaaataa taaaaaaatg
     5281 aagatataaa aattaagccc taagaatggg cttaatcaaa attaatggca accacaacca
     5341 ccgcagcagc tagaaccacc aaaaaatgca tcaagttttg caatatctgg catttctgtg
     5401 atttcattta caagttcttt atatgccact ttaccctctt taatcacaaa tacggcacga
     5461 gctaaaagcc cttctaaagc accttcattt atcaaaacac catatttttc accaaattct
     5521 tttgccacaa aatcacttgc aacacttaaa ttttcaatac cttctgtact gcaaaatctt
     5581 cccatagcaa aaggtaagtc catacttact acaatcactt cagcaccatt gtaactggct
     5641 acttttttat taaattctct agcctctgta gcacaaactg gtgtatctaa gcttggaaca
     5701 cttaaaatga tttgagtttt acccgctgca ccgatttcaa tcacgcttaa atctttagct
     5761 ttaagattta ccttaggagc atctgctcca acttctactg aatttccttt aagttttaca
     5821 ggatttcctt taaaatttac tgtactcatt taatttcctt ttttgatatt ttaaacatta
     5881 ttgcaattaa tgttttagga gtgattatat cctataaata ttaattattt tttaatttca
     5941 ctcaaaatta ttttacttct ttccaagtat attttttcca cactttttga gcttccttac
     6001 tcttaataaa atctacaaat tctaaagctt ttttattttc taaacctttt tttgtaggag
     6061 caatttcagc tgcacgataa atcactgcat ttttatcttt gataaataaa gctttatcat
     6121 cgcctaaagc ctttgcccaa tgagaccaaa tgattaaagc atcaatattt ggattgttat
     6181 tccactcatc tacagcagct ttggaatttt tagcataaat ttttatattt ttacgtaatt
     6241 ttaccaaatt ttctcttttt gcacttttta aagccatatc ttcataaagt ccaacttgtc
     6301 ctgcaccatc aaccaccata acatttatgc catcttttaa aatgtcttca aaatttttaa
     6361 tattttttgg attatttgga cgcacgataa tacctgatgg acgcacattt aaaacgctta
     6421 aattttccaa acttaaactt ggaatttttt tagcaaaatc atccatcatt gaagtattgc
     6481 ctgaaaaaat caaatctgca ttttcttttg ctttatttat ccaagctgga gttggacctg
     6541 cggttacaat caccttttct tttgtttttt cttcaaattt taaagcaagc tcttttagca
     6601 caggagcggg accacctgga ccataaacta aaatttcagc atttaaaaaa cttgctgctg
     6661 ctaaacttaa aattaatatt tttttcataa aataaacctt tctttataat aatataaagg
     6721 aaattttatc aatctatagt taactctccc ttgcaaagcc ctgcttctat aagaaaacga
     6781 gaaggagcga aagaagtttt tttattttta tcatatttgg catagcttaa ataaagtata
     6841 ttttttgccc tagttactgc aacataaaaa agccttcttt cttcttctaa acttccaccc
     6901 attcccataa gcttttgatt aggaaagcga ccttgcgcaa gatcaatcac aaaaacaaga
     6961 tcaaattcca agcccttgct tgcatgtacg ctaagcaaat taactccttt gccactactc
     7021 atttcacttg cacctaaagt tagaaaatta taatacttat aaatatcgct ataatttttt
     7081 gtaagctctt ttaagacatt gaattttgtt tctatttttt ctaaattttc actctttctt
     7141 aataaatcca cctgtcctgc tttatttgtt gctcttttgg ttgcaagttc ttcacaaatt
     7201 tctctataaa aagaattttc acaaattaaa tttaccaaag tcaaagaatg ttttatttcc
     7261 atagcttttt ttaaaaaaag ataaattttt tctaaatttc tagcacataa atcattgatt
     7321 tttgaaagtt ttaaaatagg atgtgcatca aattcactct caaatttaaa acgagtttcg
     7381 ctggctaatt cttctaaatc cgcaaaaagc ccaagttgat aatttctttt ttgatgattt
     7441 tgcaaattta catttttatc aggatctaaa aaacctttta ttaaatttcc atgccctaat
     7501 tttaaaagtg cgtcaaaaat ttcttttgct aaaactccac ccacaccttt ggtgtattga
     7561 accaaatgaa taaaagccat aatatcctta ggatttacca caagagcaag catagagcta
     7621 aaagctttaa cttctaaact ttcaaaaaaa cttccacttc cctttctcac acttgcaatg
     7681 ccctgctccc ttaaagctac ttcaacccca tcagcacttg agttgttgcg aaaaatcacg
     7741 gcaatttctt ccaaacttac tccgcttgta agtatcattt tggctatatt ttgatactga
     7801 tcaaataatt cttcaaaagt aagcaaagat ggggctttaa actcatcatt tcttgtaaca
     7861 ataagttctt ttgggtataa tctttcgtta tttaaaatca ctttattagc caaagctaaa
     7921 atacttcttg atgaacggta gtttttattt aaagaaaaaa tttttgcatc tttaaaacga
     7981 tctttaaacc cacctatgat attaatatcc gctccattaa aagcataaat actttgatca
     8041 taatccccta cgcaaaacaa acttttacta tgaaaagcct ctattaagga actttgcaaa
     8101 gtatttgtgt cttgatattc atctactaaa atttcatcaa attcatattt ttcttctttt
     8161 aaaagatctt ttagattgat aagcaagtca ttaaaatcta cataattaaa acgctttttt
     8221 tcattatcat attcttttaa aatatcttca taaatttcag cataaatact ttgatcttcg
     8281 tagttttggc aaaaccaagt ataaaaatct tgattgtgcg ctttgttttg aaacaaagaa
     8341 taaagatcat ataaataact tgattgataa ggttttatat cacttaaatg cctaaaagtt
     8401 cttttttcat agacactttt aagtagagtt tttaactcgc ttgcttgctt taaggctata
     8461 tttttatccg catttctaag taaggtataa gccgtactat gaaaagttcc tgcaagtatt
     8521 ttactggtaa tatttttatc aaaaaatttc cctaaacgcc ctatcatttc tttactggct
     8581 ttatttgtga aagtcaaaag cataattttt tgaggtgcca ctcccttgct taaaagataa
     8641 gaaattcttg caacaatagt agaagttttt cccgtccctg cacttgcaat aacaagattg
     8701 tgtccaaaat cagcagtagc agcgagatat tgttcattat ttaattttga aagtggcatt
     8761 attttcctta taaaagttaa aattataaaa aaaaattact taaaaatata aaaatttaa
//
LOCUS       DAPOLW010000066         8567 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.066, whole genome shotgun sequence.
ACCESSION   DAPOLW010000066 DAPOLW010000000
VERSION     DAPOLW010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8567)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8567)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8567
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.066"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            92..865
                     /locus_tag="ROE18_001069"
     CDS             92..865
                     /locus_tag="ROE18_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDX3651251.1"
                     /translation="MKIKSLFIASILTLSLNANALETITVAATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKEGVKIAIPNDPTNESRALDIIAKKGLVKFKDKALKTPLDIID
                     NPKKIKFVELKPAQLPRALNDVDFAVINSNYALSANLNPAKDSVFIEDKESPYANILV
                     VRVGHENDPKIKALIQALQSDKIKQFIIEKYNGSVLPAF"
     gene            914..1684
                     /locus_tag="ROE18_001070"
     CDS             914..1684
                     /locus_tag="ROE18_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDX3651252.1"
                     /translation="MNLFKIIILACILNLSSLFAQNITIGATPNPFGSLLELMKDDFK
                     NKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSPYVNYVVV
                     RSEGKNSEKTKVIDEILRSDKFKAIINEHYKDILIPAF"
     gene            1694..2470
                     /locus_tag="ROE18_001071"
     CDS             1694..2470
                     /locus_tag="ROE18_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDX3651253.1"
                     /translation="MNIKKIFLSVLFTISLSFGADKTIIIGATPTPYAEILNFSKPLF
                     QEKGWKLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTKLSSLGAIVLV
                     PMAIYSNSIKDIKDIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDIS
                     KNPKKLKFIELKAAQLPRALNDTDLAIITTNYALGAGLNPLKDGIFMEDKDSLYAIVL
                     ATRKGEETSQKSLVIKEILTSDKIKNFIIEKYKGSVIPTF"
     gene            2554..3216
                     /gene="flgA"
                     /locus_tag="ROE18_001072"
     CDS             2554..3216
                     /gene="flgA"
                     /locus_tag="ROE18_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HDX3651254.1"
                     /translation="MKIIFLTFFIVINYIQAASLEEIKTALAKEFRNNFPKIIISQID
                     LKITSLPKDFDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLK
                     SERAIKRGDKLGAFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKT
                     TALIRRNDPIIGVLSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMI
                     IQ"
     gene            3213..3776
                     /locus_tag="ROE18_001073"
     CDS             3213..3776
                     /locus_tag="ROE18_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HDX3651255.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLNFKTE
                     NQANLEEICQENFKYTHFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQMGVIIAPPIIASYSKANNLE
                     QMENFIAGKWLDLLEIKHNLYEKWQNF"
     gene            3816..4292
                     /gene="coaD"
                     /locus_tag="ROE18_001074"
     CDS             3816..4292
                     /gene="coaD"
                     /locus_tag="ROE18_001074"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HDX3651256.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPCY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVAHGGDVSSLVPKEILPFLKDQSCM"
     gene            4283..4861
                     /locus_tag="ROE18_001075"
     CDS             4283..4861
                     /locus_tag="ROE18_001075"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HDX3651257.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPINKRAELLLFLADRAQHFEEILKTNQNKLIISDRSFISGMAYAKDFENDL
                     LFALNSFALENFFPQKIIFLKGDANLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISVEILTLDAKESKEKLHQQIKEFLQ"
     gene            4858..6084
                     /locus_tag="ROE18_001076"
     CDS             4858..6084
                     /locus_tag="ROE18_001076"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HDX3651258.1"
                     /translation="MINALKGMKDLLDKDAYYYEKVIKICEEVAKNYGFTFINTPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYYGSMFRYERPQKGRLREFHQFGVESLGIPNVYEDASIILMLVEIFSRLGIDFKLQ
                     LNSLGCSQCLPKYRDRLVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQNLLENAP
                     LLINNLCTSCQKDFETLQQILKDNGVKFELDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLGGKSGYGIGFAMGIERIITILEQKEEKIQREGIYLCAMDEIYIQ
                     KLLHIATNLRKEYKVLLSYEARKLAKHLENADKNNTEIFLCMGENEAQNESLFYKNLA
                     KKEEKMIKISDLKKVL"
     gene            6081..7916
                     /gene="speA"
                     /locus_tag="ROE18_001077"
     CDS             6081..7916
                     /gene="speA"
                     /locus_tag="ROE18_001077"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HDX3651259.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSI
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDALEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            7917..8555
                     /gene="cysE"
                     /locus_tag="ROE18_001078"
     CDS             7917..8555
                     /gene="cysE"
                     /locus_tag="ROE18_001078"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HDX3651260.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGVWAVVNYRFAH
                     FFYIRNFKRIARMISGISQFLTGVDLHPGAELGRRIFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGTKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDIGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELENLILKQPESQK"
BASE COUNT         3253 a         1253 c         1417 g         2644 t
ORIGIN      
        1 actatcaaca agtttttata tgcttcttcc tgatagtcag agtgaattta ttaagattaa
       61 agcaagcaca aaatgactaa aaaggaaaaa aatgaaaatc aaatctttat ttatagcaag
      121 tattttaaca ttaagtctta atgcaaatgc attagaaacc atcacagttg cagcaactcc
      181 cgtccctcat gctgaaatcc tagaacaagt aaaacctgat ttagaaaaac aaggctataa
      241 acttgaaatc aaagaattta cggattatgt tttgcctaat ctagctgttg ataacggaga
      301 agccgatgca aattttttcc aacatactcc ttatttggaa gaatttaata aaaacaaagg
      361 caccaaactt atcaaagtag ctgccataca catagaacct atggctgttt actccaaaaa
      421 atacaaaagt ctagatgata ttaaagaagg ggttaaaatc gccattccaa atgatccaac
      481 caatgaaagt agagctttag atattattgc aaaaaaaggt ttggtaaaat ttaaagataa
      541 ggctttaaaa acacctcttg atattataga caatcctaaa aaaattaaat ttgtagaatt
      601 aaagcccgca caacttccaa gagctttgaa tgatgttgat tttgctgtaa ttaattccaa
      661 ctacgctctc tctgcaaatc taaatcctgc aaaagatagc gtatttatcg aagataaaga
      721 aagcccgtat gcaaacattc ttgttgtaag agtgggacat gaaaacgatc caaaaatcaa
      781 agccttaatc caagctctac aaagtgataa aatcaaacaa tttatcatag aaaaatacaa
      841 cggatctgtt ttacctgctt tttaattttg tcccttacct agggactttt ttcttaagta
      901 caaaggagtt tttatgaatt tatttaaaat tattatactc gcttgcattc taaatttatc
      961 tagcctattt gcacaaaaca ttactatagg agccactcca aatccttttg gtagcttact
     1021 agaactaatg aaagatgatt ttaaaaacaa agggtatgag cttaaaatag tagaattttc
     1081 agactatatt ttacccaatc gtgcattaga ggaaaaagaa cttgatgcaa atttatatca
     1141 acacaaacct tttttagaag aatacaacct aaaaaaaggt tcaaatttaa ttgcaacaac
     1201 gcctgtactt atagctccag taggagttta tagtaaaaaa atcaaaaatt tagaaaatct
     1261 taaagaaggt gctagagttg ctatacctaa tgatgcgacc aatgaaagca gagctttaga
     1321 gcttttagag aaagcaaaat taatagagct taacaaaaat actctaaaaa ccccattgga
     1381 cataaacaaa aatccaaaaa aacttaaatt tatagaactt aaagccgcac aacttccaag
     1441 agctttagat gatgttgata ttgctataat taattctaat ttcgcacttg gagccggtct
     1501 gaatccaagt aaagatacta tttttaggga agataaaaat agcccttatg taaattatgt
     1561 tgtggtacgc tcagaaggta aaaatagcga aaaaaccaaa gtaattgatg aaattttaag
     1621 aagcgataaa tttaaagcca tcattaatga acattataaa gatatattaa tcccagcttt
     1681 ttaggagtat aatatgaata ttaaaaaaat atttttaagt gttttattta caattagcct
     1741 tagttttggg gcagataaaa ccataatcat aggtgcaaca ccaacgcctt atgctgaaat
     1801 tttaaatttc tctaaaccct tatttcaaga aaaaggttgg aagttaatag ttaaggaatt
     1861 taatgactat aatataccta acatcgcttt aaatgaaaaa gatttagatg caaatttata
     1921 tcagcataaa ccttttttag atgattttaa tacccacaaa ggaacaaaat taagttcttt
     1981 aggtgctatt gttttagttc ctatggctat atattctaac tccataaaag atataaaaga
     2041 cattcctaat ggtgctaaaa tcgctatacc taatgatgct accaatgaaa gcagagctct
     2101 tgatttacta gctaaagcaa atttaataga gtttaaaagt caaagcaccc ttaaaacccc
     2161 tattgacata agtaaaaatc caaaaaaact taaatttata gagcttaaag ccgcacaact
     2221 tccaagagcc ctaaatgata ctgatttggc tattattacc acaaactatg ctcttggagc
     2281 aggcttaaac cctttaaaag atggtatttt tatggaagat aaagatagtt tatatgctat
     2341 tgttttagct acaagaaaag gtgaagaaac aagtcaaaaa agtcttgtta ttaaagaaat
     2401 tttaacaagc gataaaatta aaaattttat catagaaaaa tacaaaggct ctgttatccc
     2461 tactttttaa ctctatacaa agccttctaa aggctttgtt aaacttataa aagctaaaat
     2521 actatttatt gcattataat tcttaggata aaaatgaaaa ttattttttt aacttttttt
     2581 attgtgataa attatatcca agcagctagt ttagaagaaa tcaaaacagc actagctaaa
     2641 gaatttagaa ataattttcc taaaattata atttctcaaa ttgatttaaa aataacatca
     2701 ttgcctaaag attttgatca atatgaattt ctaagaatcg ctaatgggcg ttttaatcaa
     2761 gcacaaggct ttttaagggc tgaatttaaa actccgcaaa atatacaaaa aaatgtattt
     2821 tttagatatt tcattcaagc aaatttagaa gttttaaaaa gcgaacgcgc tataaaaaga
     2881 ggagataaac ttggagcttt tgactataaa agcgtattga ttgattttga taaagttcct
     2941 ttaaatgcct taaccttaga tgatgtagat aatcttgtag ctaaaagcaa tattaacaaa
     3001 aacgccattt taagagcaaa tatgtttaaa accacagctt taatacgccg aaatgatcct
     3061 ataatcgggg ttttaagcga agcaaatgtt gatgttttaa tcgaacttgt ggctttgcaa
     3121 agtgcaaata tgggcgaaag gattcgtgca aaaaacaaag aaggtaaagt tatgcaaggt
     3181 atcgtagtgg gtaaaaatag gatgattata caatgaaagt tttattggga atttctggtt
     3241 caagcagtgt caatttaggc ttaaaattat taaaaaattt agaaaatcaa tgcgaacttt
     3301 attgtatttt aacccaaggt gcaaaactta acttcaaaac tgaaaatcaa gcaaatttag
     3361 aagaaatttg tcaagaaaat tttaaataca ctcatttttt agatgataaa aatttaagtc
     3421 taagtgtagc aagtggatct tttggaatag aaaaaaccat cattgctcct tgttcaattt
     3481 caagtttagc aaaaattcac gctggttttg cagacactct tttaatgcgt gctgcagcag
     3541 tagccctaaa agaaagaaaa aaactcatct taggggtacg tgaaatgcct ttttctactt
     3601 taaatttaga acatatgtta aaacttagcc aaatgggagt tatcatcgcc cctcctatta
     3661 tcgcaagcta ttctaaagca aacaatctag agcaaatgga aaattttatc gcaggtaaat
     3721 ggttagatct tttagaaata aaacacaatt tatatgaaaa atggcaaaat ttttagttta
     3781 aatttgttat atttttaaaa aaaattggag caaaaatgac ttgtttatat cctgggactt
     3841 ttgatcctat taccaacggg catttagatg ttataaaacg ggctttaaaa atttttgatg
     3901 aagtcatcgt tgccatagca aaaagtgaac ataaaaaacc ttgctatgat ttagaaaaac
     3961 gcaaagaact agccctgctc gcaacacaaa atttaaaaaa tgttaaaatc attgcttttg
     4021 ataatttact tgtagattta gccaaagaat taaaagttaa tactataatc cgtggactta
     4081 gagcagtgag tgattttgaa tacgaattgc aaattggcta tgcaaatcac gcactttggg
     4141 aagatatgga aaccatttat cttatgccaa gtctaaaaca tgcttttatt tcaagttcta
     4201 ttgtgcgttc tatagtagca catgggggtg atgtaagttc tcttgttcca aaagaaattc
     4261 tacctttttt aaaggatcaa tcttgtatgt agtttttgaa ggtattgact gcgtaggaaa
     4321 aagtacgcaa atttcacttt taaaagaaat ttataaagac gccattttca cactcgaacc
     4381 tggcggaaca gaacttggaa aacatttaag agaaatttta cttaataaaa ctcatcctat
     4441 taacaaaaga gctgaactct tgcttttttt agctgatcgt gctcaacatt ttgaagaaat
     4501 cttaaaaacc aatcaaaaca aactcattat tagcgataga agttttattt caggcatggc
     4561 ttatgccaaa gattttgaaa acgatttgct ttttgcttta aatagttttg ctttagaaaa
     4621 tttttttcca caaaaaatta tctttttaaa aggagatgca aaccttatcc aagaacgcct
     4681 cagtcaaaaa gaactagata gtatagaaaa acgtggcatt gagtattttt taagcgtgca
     4741 agataaactc gaaaaagtgc ttcatttttt aaaagaaaaa atttctgtag aaattttaac
     4801 acttgacgca aaagaaagta aagaaaaatt acaccaacaa ataaaggaat ttttacaatg
     4861 attaacgctt taaaaggaat gaaagattta ttagataaag atgcatatta ttatgaaaaa
     4921 gtgattaaaa tctgcgaaga agtagctaaa aactatggct ttacttttat caatacaccg
     4981 catttagaac tttgcaccct ttttaaaaga agcgtaggag aaagttctga tatagtaggt
     5041 aaagaaatgt atgaatttat cgataaaggc gaaaatcatg tttgcatgcg tcctgaagga
     5101 actgctgggg tggtgcgtgc ctatatagaa aaaaaactcg ataaaaacac tagtgtgaaa
     5161 agatggtttt attatggttc tatgtttcgt tatgaaagac ctcaaaaggg tcgcttaaga
     5221 gaatttcatc aatttggagt tgaaagcctt ggcataccta atgtttatga agatgcaagc
     5281 attattttaa tgctagtaga aattttctca cgccttggta ttgattttaa acttcaactt
     5341 aattctttag gctgctcaca atgcttgcca aaataccgcg ataggctcgt tgaattctta
     5401 gattccaaag aaggtttttg tgaagattgt ttgcgtagaa aaaatttaaa tcctattcgt
     5461 gtcttagatt gtaaaaatga gcattgtcaa aatttgcttg aaaatgctcc gcttttgatc
     5521 aataatttat gcacctcttg ccaaaaagac tttgaaacac tgcaacaaat tttaaaggat
     5581 aatggagtta aatttgagtt agattcaaaa cttgtgaggg gtttggatta ttattctaaa
     5641 acggcttttg aatttataag cgatgaaata ggagcaaagg ctgctatcgc aggtggagga
     5701 cgctacgata gacttataga gtatttaggt ggaaaaagtg gctatggtat aggttttgcc
     5761 atgggtatag aaagaattat aactatttta gaacaaaaag aagaaaagat tcaaagagaa
     5821 ggaatttatc tttgtgctat ggatgaaatt tatatccaaa aacttttgca tatcgctaca
     5881 aatttaagaa aagaatataa agtactttta agctatgaag caagaaaact agccaaacat
     5941 cttgaaaacg cggataaaaa taatactgaa atttttcttt gcatgggaga aaatgaagca
     6001 caaaatgaaa gtttgtttta taaaaattta gcaaaaaaag aagaaaaaat gattaaaatt
     6061 tcagacttaa agaaggtttt atgatggatt atggtattga tatttgggga aatgaaaatt
     6121 tcattatcaa aaatggtaaa gtttgtatca attacgagaa aaaacctgct attattgata
     6181 tagttaaaga attaagagat gatggataca aggggccttt acttttaaga tttcctcatc
     6241 ttatccaaaa acaaattgaa aatatttacg gaaatttcaa taaagcaaga aaggaatttg
     6301 gctataaagg aggatttaac gctgtttatc ctttaaaggt caatcaatat cctggttttg
     6361 taaaaaatct tgtaaaactt ggaaaagact ataactatgg acttgaagca ggttctaagg
     6421 cagagctttt actcgctatg gcttataata acgaaggcgc acctattacc gtaaatggct
     6481 ttaaagatag agaacttatc aacataggct ttatcgcagc tgaaatggga cataatatca
     6541 ctttaaccat agaaggactt aatgaacttg aagctatcat agacatagct aaagaacgct
     6601 ttaaacctaa accaaatata ggcttacgtg tacgtttgca ttctgctgga gttggaattt
     6661 gggcaaaaag tggtgggatt aattctaaat ttggacttac atccactgaa ctcatagaag
     6721 cggtaaattt actcaaagaa aacaaacttt tagaacaatt taccatgatt cactttcatc
     6781 taggctcaca aattaccgaa attcatccct tgaaaaaagc cttaaatgaa gcaggaaata
     6841 tttacacaga acttagaaaa atgggagcta aaaatctaaa agctatcaat cttggtggcg
     6901 gtttagctgt ggaatactca caatttaaaa atgaaaaaag tagaaattac accctaagag
     6961 aatacgctaa cgatgtagtt tttatcctaa aaaacatagc cgaacaaaaa aaagatttag
     7021 agcctgatat tttcatagaa agtgggcgtt ttgtagcagc caatcacgct gttttaatcg
     7081 ctcctgtatt agaacttttt tctcaagaat acgcagaaaa caaactcata cttaaaaaac
     7141 aaaatccaaa acttatcgat gagctttacg atctttataa aagcataaaa ccttccaatg
     7201 ctttagaata cttgcacgat agcatagatc atttagagag tattttaact ctttttgatt
     7261 tgggctatgt cgatttgcaa gatcgttcca atgctgaaat tttaactcat ttgattacga
     7321 aaaaagccat cttgctttta ggcgataaac aaaatcctgc ggatttactt gccatacaag
     7381 atgaagtgca agaaaggtat ttggtaaatt tttcactctt tcaaagcata cccgattttt
     7441 ggggcttaga acagaatttc cccatcatgc cacttgatcg cttagatgaa gaaccgactc
     7501 gaagtgcaag tatttgggat ataacctgcg atagcgatgg agaaatttca tactctaaag
     7561 ataaaccttt atttttacac gatgtagatg tggaaaaaga aaattatttt ctaggatttt
     7621 tccttgtagg tgcctatcaa gaagtacttg gaatgaaaca caatcttttt actcatccta
     7681 ctgaagctat tataagcatc aatgaaaaag gctatgaagt tgaggggatt atagaagcac
     7741 aatccatact tgatgcctta gaagatttag actatgatat acacgctatc atggatatac
     7801 ttaatgaacg cataagtaat tctaagcttg taaatgacaa acaaaaaaaa catattttag
     7861 gcgagcttta tcttttctta aatgataatg gttatttaaa aagcatagga gtttagatga
     7921 atttttgggg tattataaaa gaagattttt ctcagccaaa ggcacaagat ccagctttta
     7981 attcttgtat agaacttttt tttaattacc ctggagtatg ggctgtagta aattaccgct
     8041 ttgcacattt tttttacata agaaatttta aacgcattgc tagaatgatt agcggaattt
     8101 cacaattctt aactggggta gatttgcacc ctggagcaga acttggaagg cgtattttta
     8161 tagatcatgc caatggagtg gttataggtc aaacagcaat tatagaagat gatgttttaa
     8221 tttatcaagg cgttacttta ggtgggacaa gccttgaaaa aggtactaaa cgccatccaa
     8281 ccataaaaaa aggagtgatc ataggctcag gcgcaaaagt gcttggcaat atcaccatag
     8341 gagaaaatgc caaaataggc tcaaatgctg tagtggttaa agatataggt gcaaatttaa
     8401 ctgccgttgg aattcctgct tatattatcg aagagcgtaa aaataaaaac attagagcca
     8461 tagatgcaaa ttgcgatgac aaactagaaa agttagaaaa gaaaatttta gaacttgaaa
     8521 atcttatatt aaaacaacct gaatcacaaa aataataatt ttttata
//
LOCUS       DAPOLW010000067         8501 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.067, whole genome shotgun sequence.
ACCESSION   DAPOLW010000067 DAPOLW010000000
VERSION     DAPOLW010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8501
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.067"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            13..438
                     /gene="exbB"
                     /locus_tag="ROE18_001079"
     CDS             13..438
                     /gene="exbB"
                     /locus_tag="ROE18_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HDX3651261.1"
                     /translation="MEFLKDYIDLIIFLILGIMAFIAFWCVVERMLFFRKINFKNYEN
                     QEQFDDAISENLTTIYIIYSNAPYIGLLGTVIGIMVTFYEMGLAGNIDVKSIVVGLSL
                     ALKATALGLLVAIPALMAYNALLRKVSLLSNAYKANKNA"
     gene            431..820
                     /gene="exbD"
                     /locus_tag="ROE18_001080"
     CDS             431..820
                     /gene="exbD"
                     /locus_tag="ROE18_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HDX3651262.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPS
                     SENATNISNNEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAK
                     FESFVKIIDFLKAKEHENFQILTEKNK"
     gene            817..1500
                     /locus_tag="ROE18_001081"
     CDS             817..1500
                     /locus_tag="ROE18_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDX3651263.1"
                     /translation="MKTLFLNHKYQASYITFIVFIPLLFVIFHSNDFFKMEIKNEDSF
                     SLAIKQFTQTNPTNETKPTESIIEPIKPKPQPKVIKKTPEKMQKKIKKTPPHPIPNKT
                     PIAPTQEVKTFAKTTDTNVKPKITQLTQGKDNHPVLKEIQKAIQQAQFYPRQAKKMRM
                     QGTVKVEFLWKENKTLADLKIIEISGYDLLDKSALESIRKASLNFPHYNGDLRITLPI
                     IYDFKTLRG"
     gene            complement(1513..2382)
                     /locus_tag="ROE18_001082"
     CDS             complement(1513..2382)
                     /locus_tag="ROE18_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651264.1"
                     /translation="MKIDTSASLTHSLTNNVDKKELSVLKKEDQDKIPVQDLSSLNSD
                     GVKVVFENKQGELIALNLSDENYSSLQKNFGSYMNYVARNDGSIRLNGEVNQFVSNWF
                     ESVKDNFGSLNSNLNNKQQSVKLNFNTSTLQQSMQNLGFKTSDEKISDDANIEEKLNF
                     FIDKDVNKDGKVDDSDVKEPSMREILSDIKEASGGGANAMKTIDPQKINKKDDKENNI
                     KEKEDEDLLQKAQEKGLSALSADEQAKLEASNPEEFEKLKQKSLQELSQNLSKDFQNK
                     IENQEAQIVDKRV"
     gene            complement(2386..2547)
                     /locus_tag="ROE18_001083"
     CDS             complement(2386..2547)
                     /locus_tag="ROE18_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651265.1"
                     /translation="MLKIILVLSILSSFAFANSCANYEQELKKCNSLKNSHERKMCRL
                     GLFAKCKKG"
     gene            2642..3625
                     /locus_tag="ROE18_001084"
     CDS             2642..3625
                     /locus_tag="ROE18_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MnmA/TRMU family protein"
                     /protein_id="HDX3651266.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMVGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGIIGRSRKRQLELAAKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEAIEIGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEVGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            complement(3711..4799)
                     /gene="aroC"
                     /locus_tag="ROE18_001085"
     CDS             complement(3711..4799)
                     /gene="aroC"
                     /locus_tag="ROE18_001085"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HDX3651267.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFDICVQSGVFGVGTFV
                     SNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSCNNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLKFELKGRHDPCVGVRGSVVASA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(4799..5473)
                     /locus_tag="ROE18_001086"
     CDS             complement(4799..5473)
                     /locus_tag="ROE18_001086"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HDX3651268.1"
                     /translation="MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN
                     GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            complement(5460..5900)
                     /gene="rnhA"
                     /locus_tag="ROE18_001087"
     CDS             complement(5460..5900)
                     /gene="rnhA"
                     /locus_tag="ROE18_001087"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HDX3651269.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            complement(5887..6873)
                     /locus_tag="ROE18_001088"
     CDS             complement(5887..6873)
                     /locus_tag="ROE18_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651270.1"
                     /translation="MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFANKDEEQKL
                     EKFIKKFEMDNAHKELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKCKDKQ
                     EREFIFLSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLE
                     LLECLFELNEDVQKERDFIKALELCTFNITDEEKKKKLLEFKIEDNPMLGRLVFEKYH
                     MFLGQNFFDICDLLYRENEAFNLENQDFLEFFYALGKISKHDDTHQFVFKNSNFKMLK
                     ILKDNSFNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEVKNNETH"
     gene            6943..>8501
                     /locus_tag="ROE18_001089"
     CDS             6943..>8501
                     /locus_tag="ROE18_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDX3651271.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCICPFHADKN
                     PSMHINPIKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     QNQKIPLEDAMSVGALKKDENNEFYTSFIWRITFPIYDHKDLLVGFGGRTLNPNVPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEKIHIAELELIAFLK
                     QHPDICNDFKQISDSVCFKHKILLDKILEKKGYEDSDIREFESKNIRKNLNYSEFLLG
                     ICKVNLAFLNNV"
BASE COUNT         3058 a         1443 c         1101 g         2899 t
ORIGIN      
        1 ttggagaaaa atatggaatt tttaaaagat tacatcgatt taattatctt tttaattcta
       61 ggaattatgg catttatagc tttttggtgt gttgtagaaa gaatgctatt ttttagaaaa
      121 attaacttta aaaattatga gaatcaagag caatttgatg atgcgattag tgaaaattta
      181 accactatat atatcatcta ttccaatgcc ccttatatag gacttttagg cactgtaata
      241 ggcatcatgg ttacatttta cgaaatgggc ttggcgggca atatagatgt caaatctata
      301 gtcgtggggc tttctttagc tcttaaagct acagccttag gacttttggt tgctattcct
      361 gctttaatgg cttataatgc cttacttaga aaagtttccc tcttaagcaa tgcttataag
      421 gcaaataaaa atgcttaaac taccaaaaaa tgaaggttta aatatagtcc catttataga
      481 cattatgctt gttttgcttg ctatagtact tagtatttca acctttattg cgcatggaaa
      541 aattcaaatc tcacttcctt caagtgaaaa tgctaccaat ataagcaata atgaaaaaaa
      601 acttcttata accatagacg aaaaaaatac tttttattta aatgataaat tagctgattt
      661 aaatgaagtt caaaatgcta ttttttcact tgataaaaaa accatagtag aactaaaaag
      721 cgataaaaat gctaaatttg aaagctttgt aaaaattata gattttttaa aagccaaaga
      781 acatgaaaat tttcagattc ttactgagaa aaacaaatga aaactttatt tttaaatcat
      841 aaataccaag cttcttatat aacttttata gtctttatac ctttactttt tgtcattttt
      901 cactcaaatg acttttttaa aatggaaatt aaaaatgaag attctttttc tttagcaata
      961 aaacaattta cccaaactaa tccaacaaat gagactaaac caacagaatc cattatagaa
     1021 cctatcaaac caaaacctca gccaaaagtt attaaaaaaa ctcctgaaaa aatgcaaaaa
     1081 aagataaaaa aaacacctcc acacccaata ccaaataaaa ccccaatagc accaactcaa
     1141 gaagttaaaa cttttgcaaa aacaactgat acaaatgtca aacctaagat cactcaatta
     1201 acacaaggaa aagataatca ccctgtatta aaagaaatcc aaaaagctat acaacaagca
     1261 caattttatc caaggcaagc aaaaaaaatg cgtatgcaag gaactgtaaa agtagaattt
     1321 ttatggaaag aaaacaaaac tttagcagat ttaaaaatca tagaaatctc gggatatgat
     1381 ttgttagata aaagtgcttt agaaagcata agaaaagctt ctttaaattt tccacactat
     1441 aatggagatt taagaattac actacctatt atatatgatt ttaaaaccct aagaggataa
     1501 aattataatt tgctacactc tcttatctac aatttgtgct tcttgatttt caattttatt
     1561 ttgaaaatct ttacttaaat tctgacttaa ttcttgcaaa gatttttgct tcagtttttc
     1621 aaattcttca ggattgctag cctcaagctt tgcctgctca tcagcactta aagcacttaa
     1681 acctttttct tgagcttttt gaagcaaatc ttcgtcttct ttttctttga tattattttc
     1741 cttatcatct tttttattga ttttttgcgg atctatggtt ttcatagcat tagctccacc
     1801 acctgatgct tctttaatgt cgcttaaaat ttctctcatg ctaggttctt taacatcact
     1861 atcatcaact ttaccatctt tatttacatc tttatcaata aaaaaattta atttttcttc
     1921 tatatttgca tcatcagata ttttttcatc acttgtttta aagcctaaat tttgcatact
     1981 ttgttgaagg gtacttgtat taaaatttaa ttttacactt tgttgtttat tatttaaatt
     2041 tgaatttaaa gaaccaaaat tatcttttac actttcaaac caatttgaaa caaattgatt
     2101 tacttcgcca ttaagcctta tactaccatc atttctagca acataattca tataagaacc
     2161 gaaatttttt tgtaaactac tataattttc atcgcttaaa tttaaagcta taagttcacc
     2221 ttgcttattt tcaaaaacaa ccttaacacc atcgctattt aaactcgaaa gatcttgcac
     2281 gggaatttta tcttgatctt ctttttttaa tacgctaagc tcttttttat caacattatt
     2341 agttaaagaa tgggttaaac tagcagaagt atcgattttc attatttatc cttttttaca
     2401 ttttgcaaat aaacctaaac gacacatttt tctctcatgt gaatttttta aagaattaca
     2461 ctttttaagt tcttgctcgt agttagcaca agaatttgca aaagcaaaag aactcaaaat
     2521 gcttaaaacc aaaattattt ttaacattct ccaatcctta ttttaaagat tttttagtta
     2581 aaattatacc ttttataatc gacaaaatct taaaaaactt tataatctca gaaaggaatc
     2641 aatgaaagca ttagctcttt ttagcggtgg gcttgatagt atgcttgcaa tgaaactcat
     2701 cactgcacaa ggcatagaag ttaaagctct aaatatcaac ataggttttg gaagcacaag
     2761 tgataaaagc gaaatcatga aaaagcgtgc ggcaatggta ggtgcagatt ttgaaatgat
     2821 agatgtaaga aattcctatc ttcaagaagt gctttttaat ccacaatatg gctatggcaa
     2881 acattttaat ccttgtatag attgtcatgc ttttatgttt aaaactgctc ttgctatgtt
     2941 aaaagaagaa aatgcaagtt ttatcatcac aggagaagtt ttaggacaac gccctatgag
     3001 tcaaagaagt gatgcaatgg caaaggttaa aaaacttgct cttgatgaag aagatttaat
     3061 cttgcgtcct atgtgtgcaa aaaacctacc tctaaccaaa cctgaaagag aaggttgggt
     3121 agatagagaa aaactcgaag gtattattgg aagaagtcgt aaaagacaac ttgaacttgc
     3181 agctaaattt ggcttagaag actttgaaag cccaggtgga ggttgtttgc taactcttga
     3241 tagttttgct aaaaaaattc gagatttcat agaatttgac aaagatatgc aggttaatga
     3301 cgcacaactt ttaaaatatg gtcgtcattt aagattaccc aatggagcta aaatgatcat
     3361 aggtagaaat gaacttgaaa atactctttt aaaaggttta aaaactccta aatatgaagc
     3421 aatagaaatt ggggatttaa tcggagctta ctctttggta gatgaaaaaa tttcagaaaa
     3481 agacttagaa cttgccttaa aaatagccct tacctatact aaacacgaag taggaaaaag
     3541 ctatgaactt aaatttaaaa atcaagctta tacaagtata gcttttgaaa ataaggctga
     3601 tattaatcaa ttttttatta gttaaagtat aaagtattta gcaaaacaag cgatatagta
     3661 tttgaatctt ttcaaaatat tgcaatcaag cccatgaaaa tgggcttttt ttattttaat
     3721 ccataagcat tttttaaatt gtttaaattc gcactcgcat tcaaaagcaa acaatcagcc
     3781 aaaactaaac gtaccatagc actagctaca acacttcctc taacacctac acaaggatca
     3841 tgcctacctt tgagttcaaa tttcaaatta ttgccaaatt tatctatact ttcttgcttg
     3901 gcaaaaatag aaggagtagg tttaaaataa gtttttaaaa taagattttc tccatttgaa
     3961 attcctccta aaattcctcc gctatgattg cttaaaaact tgccatcttt taaagcatca
     4021 ttattacacg atccgcgcat tttgcttgca ttaatacctt cgcctatttc aactgcttta
     4081 acagcattaa ttcccattaa agcatgagct aatttagagt ctaacttatc ataaagaact
     4141 tctccaagtc ctataagcat accactaact tttgtaaaaa cagcagcgcc tacgctatct
     4201 tttgaatttc tagcatttaa aatttcattt ttaaagtcac tttctagttt tggatcaagg
     4261 caaaaaattt cacttttctt agcaaattca aaatcaaatt cttcttcttt caaatttgat
     4321 acaaaagttc ctactccaaa aacaccactt tgaacacaaa tatcaaattc acgcaaaagc
     4381 atcgctgcaa ctgcaccacc agccactcta gcaacacttt ccctagcgct tgatctaccc
     4441 ccacccctat gatctcttat gccatattta taaaaataag taaaatccgc atgagcagga
     4501 cgaaatagat cttttaaatt atcataatct ttagaatgag cattttcatt aaaaactact
     4561 atagctatgg gatgacccgt tgtatatcct tcaaaaaccc cgcttaaaac ctgagcttta
     4621 tcgctttctt ttcttggtgt tgcaaattta cttccgcctt tgcgtttatc aagctcattt
     4681 tgcaaaaatt cttcatcaaa tttaacccca gcaggcattc catcaataat acatccaaca
     4741 gccacaccat gagactcacc aaaacttgta aatttcaatc tcgtaccaaa ggtattcact
     4801 ataaagctcc taatttctca agtgcaattt ttgctgccat ttgctgtgct tcttttttgc
     4861 ttcctgcaat agctcttgca agttctttac catcaagcat taaagcaatt tcaaattgct
     4921 ttaaatgatc agggccaaaa gcacgcactg tttcatactg cggagtttgt ccgatttttc
     4981 cctgtgtaat ctcttgtaat tttgttttat aatcttttat aagaattttt gcatcaattt
     5041 gagggaaatt tttttctata agccttaaag caatagtttt tgcaaactcg aacccagctt
     5101 ctaaatgtat agcacctata atggcttcta acgcatctga aagtatagaa ggcttttctt
     5161 ttcctccatt gttttcctca gcaacactca taagaataaa atcgcccaaa tttaaactat
     5221 ttgcaatttt tgcaaaagac ttttcattta ctaaagctgc tctaagctta gataaatctc
     5281 cttcggcatc tttggcgaat ttatgaaaaa ggtattcacc tacaactaaa tcaagcacgg
     5341 catcacctaa aaattccaag cgttcgttgt tgtaagattt tttaaaactt ttatgggtta
     5401 aagcatgtat aagaagattt ttatctttaa attcataagt taaactctgc tctagctttt
     5461 caatgttttt catcattttc ccttgcaatt ttcaaagcag cttcacgcgc caatgtatca
     5521 cacctttcat tttccaaatg tccattatgt gcttttaccc aaaaagcctt aatcttatga
     5581 gattttgcca ctttaatata ttccttccat aaatctatat tttttttacc tttaaaatcc
     5641 ttttttatcc atccttctag ccattcatta atactttgaa ccattaggtt agaatctgta
     5701 aaaagcgaaa tttcacaagg ctcttttaaa gccttcaaag attcaataat tgccattagc
     5761 tccattctat tgttagtggt attagcctca gctccaaaac cttccttttg atactcctta
     5821 taacgcaaaa tataagccca tccgccaaaa cctggattat taagacatga gccatctgta
     5881 taaatttcaa tgtgtttcat tgtttttcac ttcataaata attttacaag tattaaactc
     5941 ataacaaaca ggacagtgat aaaaaaacaa aggcattaca tttttacact cagaacaacg
     6001 atatgaaaat tctaaccccg cattaaaaga attatctttt aaaattttta acattttaaa
     6061 gttagaattt ttaaaaacaa actggtgcgt atcatcatgc tttgaaattt tacccaaagc
     6121 ataaaagaat tctaaaaaat cttgattttc taaattaaac gcttcatttt ctctataaag
     6181 caaatcacaa atatcaaaaa aattttgccc taaaaacata tgatattttt caaaaactaa
     6241 acgccccaac ataggattat cttctatttt aaattctaaa agttttttct ttttttcttc
     6301 atcagtaata ttaaaagtac aaagttctaa agctttgata aaatcacgct ctttttgtac
     6361 atcttcatta agctcaaaaa gacattctaa aagttctaaa ttttctttat aagaacgaag
     6421 ttttaaataa acaattttta aaagttttaa ggcttgtata tttcttggac gcagttttaa
     6481 agcttgtaat aaaacttctt ttgcacgctc taaaaatcct gctttaaaat aaacttttgc
     6541 taaagaaagg aaaataaatt ctctttcttg tttatcttta catttttcaa gagcaatcaa
     6601 ataaatttga gttgcttttt caaattcccc gcttttagta aaaatttcag ccaaaaaact
     6661 taaatttcca aaactcaagc tactatttct taataactct ttatgagcgt tatccatttc
     6721 aaattttttt ataaattttt caagcttttg ttcttcatct ttgttagcaa atattttcca
     6781 aatataattt gcaacagcta caacaaatac taaaatggtt aaaattataa gccctactaa
     6841 agggtctctg tattctacaa agaaaaaatc catagtctcg ctctaaaaat tttatgccaa
     6901 attatagcca aatctttgta taattttaac aaggtttgta aaatgataac taaagaaagt
     6961 atagaaaatt tatcccaaag acttaatatt gttgatatta tagaaaatta tattgaagta
     7021 aaaaaacaag gctctagttt tgtatgtatc tgtccttttc atgcagataa aaacccgtct
     7081 atgcatatca atcctatcaa aggtttttat cattgttttg cctgcaaggc tggtggagat
     7141 gcttttaaat ttgtaatgga ttatgaaaaa ttaagttttg ctgatgcagt tgaaaaagtt
     7201 gcaagcctta gtaattttac tttgagttat acaaaagaaa aacaagaaaa taaaaaagag
     7261 ctaaagtcta tactaccaag cttaaatgcg tattttaaag ataatctcaa acaccacaaa
     7321 gaagttttaa cctatcttta ccagagagct ttaaatgaca aagatatagc caaattcgaa
     7381 ttaggttttg caggagcaag tgaagatagt ataagattat tgcaaaatca aaaaattcct
     7441 ttagaagatg ctatgagtgt tggagcttta aaaaaagatg aaaataatga attttacaca
     7501 agttttatat ggcgtatcac ctttccaatc tacgatcata aagacttatt ggtagggttt
     7561 ggagggcgca ctttaaatcc caatgtaccg gcaaagtatg taaattcacc ccaaaatata
     7621 ctttttgata aaagtagaat tttttatgct tttaacatcg ctaaagaaaa tatagccaaa
     7681 aaaaaagaaa taatagtatg tgaaggctac atggatgcaa tagcttttca caaagcaggg
     7741 tttaacaatg ctgtagcagt tcttggaaca gcattaaccg aacatcatct acccttaatc
     7801 cgccgttatg atgcaaaagt gattttatgt tttgacaatg atgaagcagg attaaaagct
     7861 gcgacacgat ctgcattttt attaagcaca aacaaaatag acggtaaagt ggcaattttg
     7921 caaggcggaa aagatcctgc tgagctcgta gcaaaaaatg aaagcacaaa actccataat
     7981 atactcgatg aaggaataga gcttggtgaa ttttatatca gacgcttaat atccactcat
     8041 tccataattt ctgctcttga taaacaaaaa gctttagaaa ctatacaaaa attcaccttt
     8101 aatcttgaac ctttagtggc aaattcttac actagtctag tttcaaattt attaaaagtg
     8161 gatgaaaaat ttattgtctt atcacaaaat tcaaaaaaaa ccatacaaac ccctttaatt
     8221 tctcaaaata aatacaattt tcctaaagaa aaaattcaca ttgcagaatt agaacttata
     8281 gcttttttaa aacagcatcc agatatatgt aacgatttta agcaaattag tgatagtgtt
     8341 tgttttaaac ataagatttt attggataaa attttagaaa aaaaaggtta tgaagatagt
     8401 gatattagag aatttgaaag taaaaatatt cgaaaaaatt taaactatag cgaattcttg
     8461 ttaggtattt gcaaggttaa tttagctttt ttaaacaatg t
//
LOCUS       DAPOLW010000068         8316 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.068, whole genome shotgun sequence.
ACCESSION   DAPOLW010000068 DAPOLW010000000
VERSION     DAPOLW010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8316
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.068"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            83..991
                     /locus_tag="ROE18_001090"
     CDS             83..991
                     /locus_tag="ROE18_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HDX3651272.1"
                     /translation="MGILKGTLPALLTPYKDDGSINEKEFIRYCEFGISKGLNGLFCN
                     GSAGDSQALSVEEQVKLMKLTKKATKNNIPIITGITSTIYENTFILAQKAYELGLDAL
                     LLAMPYYYKLSEDALFEYVKYLASEVKLPLYVYNIPLFAPALSLKFIEKVSKLDNVVG
                     IKDSSGDALLLNHILDVVPSNFDVFVGREEFYVGALLAGVKGSMTSIGGVFPELMSEI
                     YKSINEKNIGRALLIQKSLLKAIRFGMSIAFPMGFALLLKARGFEFVNASIHPLSPAT
                     KEELNTRFDEAKELIKTIEKETGIKL"
     gene            988..1251
                     /locus_tag="ROE18_001091"
     CDS             988..1251
                     /locus_tag="ROE18_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HDX3651273.1"
                     /translation="MKGYIIVNEKDNVATALRDFKKGEKVANIELLNDIASGHKFALK
                     DIKKDEIIIKYAEAIASASCDISTGEWVHIHNTAGIRGRGDKE"
     gene            1254..2420
                     /locus_tag="ROE18_001092"
     CDS             1254..2420
                     /locus_tag="ROE18_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HDX3651274.1"
                     /translation="MKKIMGYRREDGKFGLRNKVIIIPSVHCANKVCENIARKCNGAV
                     YINHQHGCSQLEFDALQTRDVLIGHGSNANVFGVLIIGLGCEVIQAKAVAEKIKEATP
                     YKKVEYLVIQECGGSKNTIENGIKIVNEMLESAAKLQKSEGDFSDLILGTECGGSDSY
                     SGLSANPALGSLSDFVIDEGGAVILAETTELIGCEAILAKRAKNDEIAKKVYDKILAY
                     ENLVKSFHADIRGANPSPGNMAGGLSTIEEKSLGCVYKAGTRTLMDVIDYAKPVVSKG
                     LTFMNTPGNDIEQLSAMVAGGANICVFTTGRGTPTGSAIVPTIKMSSNTFCYENMNDA
                     IDINAGSIIDGVKTKEEVRDELIELIVRISDGELVKAELNEQNDFSVWRLATTC"
     gene            2432..3717
                     /locus_tag="ROE18_001093"
                     /pseudo
     CDS             2432..3717
                     /locus_tag="ROE18_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004314306.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            3718..4506
                     /locus_tag="ROE18_001094"
     CDS             3718..4506
                     /locus_tag="ROE18_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDX3651275.1"
                     /translation="MDLKIKNKVCIITGGAKGIGYGIAKLWASEGGIPVIFSRSMPKE
                     HDKELKKLSSEYEFYEIDLKNYEQIEKLVKKVAIKHGGIYALVNNAGTNDNLHIENTS
                     TQDLIKSYENNLFHYYTMTKECLPYIKKEQGSILNIVSKTGITGQGRTSAYASAKAAQ
                     MGFTREWACAFAKDNVRVNAIAPAEVMTPLYEKWLQNFPNPKEQYEKIAKAIPLGHRF
                     TTIEEIANTAVFTLSPLASHTTGQILMPDGGYVHLDRALNWDEN"
     gene            4517..5773
                     /gene="fucP"
                     /locus_tag="ROE18_001095"
     CDS             4517..5773
                     /gene="fucP"
                     /locus_tag="ROE18_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HDX3651276.1"
                     /translation="MTDSKNIKIAIVLVTSLFFLWGVSYGLIDVMNKNFQNHLHISQH
                     ESGFLQFAYFGAYFIIALPAGYIANRFSYKMGIIFGLALYAIGALLIIPATNLASFHL
                     FLFAFFILACGIGSLETSANPYMTKLGDEKNASFRINAAQSFNGLGQFVGPIIGGALF
                     LSITKQEEGASKEQIEAALVANMGNVQLVYIGIAVIVILILIAFVANKLPEGSAVSDD
                     YKQKDDSKPIYVFKHRHFNLGLLAQFLYIANQVAAGAFFINYVVEHNEGLKDAQGAYY
                     FSIALVAFMLGRIVSTPLMKIIKGEKILGFYSLINVLICFSLYFASGFFSIVLLIALF
                     FFMSISFPTIFAVATKNLPLNQVKLGGSLLVMSIVGGAIMPIIIGFINDHYGTGAGYL
                     AMAPLFLYVAWYGFIGSKVRKNAKDF"
     gene            5757..6527
                     /locus_tag="ROE18_001096"
     CDS             5757..6527
                     /locus_tag="ROE18_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDX3651277.1"
                     /translation="MQKIFDAHLHLWDLEKIPISWIKDDEKLEQNYDFFRMKQEYKEF
                     EFIGAMYVEVNSDDLEKEALFALEQKKLHNLLFCLADFKHKEELSSFREVMHTSKKGA
                     KRLFEADFEEKIEILKTFNIPFEACIKNEELGFLEKFLSKNPNLKVVLNHLGSPKINR
                     LNEYKKDLSFLKKFQNLYIKLSIPDGFSQETPKEFIFELFAFLKENFSENKFIFGSNY
                     PVAKITPAKWAKLIIESKIFDDLDKIFYKNALLIYKGG"
     gene            6528..6845
                     /locus_tag="ROE18_001097"
     CDS             6528..6845
                     /locus_tag="ROE18_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HDX3651278.1"
                     /translation="MQRYGQIIKIKKEKIEEYKELHTKPYEGVCEMIKECNIQNYSIY
                     LFGEYLFAYFEYIGADFEADMAKMARDESTQKWWKVTDPCQISLGYAGQKWLNMEEVF
                     HLD"
     gene            6859..8298
                     /gene="aldA"
                     /locus_tag="ROE18_001098"
     CDS             6859..8298
                     /gene="aldA"
                     /locus_tag="ROE18_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HDX3651279.1"
                     /translation="MTTYLNYIDGKFIPHNGEFIEVLNPATKEVISRVASASLEDTKR
                     AIEAAKKAQKVWEVKPAIERANHLKEIASLIRKNANFLTEVLMQEQGKTRVLASIEIN
                     FTADYMDYTAEWARRYEGEIIQSDRANEHIYLYKSAIGVIGGILPWNFPFFLIARKMA
                     PALLTGNTIVIKPSSETPNNAFEFAKLVSQSSLPKGVFNLVAGKGSVVGYELSSNENI
                     GMVSLTGSVEAGTRVMEAAAKNIIKVSLELGGKAPAIVCKDADIDLAVEAIKASRICN
                     NGQVCNCAERAYVHTSVYDEFVDKFVKAMSKVSVGNTLKGDFDMGPLVNQAGVDNALA
                     MLQRATAKGAIVECGGKITDTSGYYFPASVLTNVKHEDEIMQKEIFAPILPIAKFDTL
                     DEAIDMANDCEYGLTSSIYTQNLDIAMRASREIKFGETYINRENFEAMQGFHAGFRKS
                     GIGGADGKHGLEEYLATHVVYLQYNTNKQ"
BASE COUNT         2866 a          998 c         1665 g         2787 t
ORIGIN      
        1 agttaacagc ttgatttttt tacaaatatt ttgttatatt ttttgtatat aaatatattt
       61 ttgtatatac gaaaggaaaa aaatgggaat tttaaaagga actttaccgg ctttacttac
      121 tccatataaa gatgatggaa gtatcaatga aaaagaattt attcgctatt gtgaatttgg
      181 tatttctaaa ggcttgaacg gattgttttg taatggaagt gcaggggatt ctcaagcttt
      241 gagcgtggaa gagcaagtta agttaatgaa actcaccaaa aaggctacaa aaaataatat
      301 acctatcatc acgggtatta cctcgacaat ttatgaaaac acttttattt tggcgcaaaa
      361 agcttatgaa ttaggtcttg atgccttatt acttgctatg ccttattatt ataaattgag
      421 tgaagatgca ctttttgaat atgtaaaata tttagcttct gaagtgaaac ttcccttata
      481 tgtttataat atacctcttt ttgcaccagc actaagctta aaatttatag aaaaggtttc
      541 aaagcttgat aatgttgtgg gtataaaaga tagtagcgga gatgctttgc ttttaaatca
      601 tattttagat gtagtaccta gtaattttga tgtttttgta ggaagagaag aattttatgt
      661 aggtgcatta ttagcaggtg taaaaggttc tatgactagc ataggtggag tttttccaga
      721 acttatgagc gaaatttaca aatcaatcaa tgaaaaaaat ataggcagag ctttgctaat
      781 acaaaaaagt ttattaaagg ccataagatt tggtatgagc atagcttttc ctatgggttt
      841 tgctttgctt ttaaaggcca gaggatttga atttgtaaat gctagtattc atcctttatc
      901 acctgctaca aaagaagaat taaacactcg ctttgatgaa gcaaaagagc ttattaaaac
      961 tatagaaaaa gaaacaggta taaaactatg aaaggatata ttatagtcaa tgaaaaagac
     1021 aatgttgcca cagctttgcg tgactttaaa aaaggcgaaa aagtggcaaa tattgagctt
     1081 ttaaatgata ttgcaagcgg acataaattt gcactaaagg atataaaaaa agatgaaatt
     1141 attatcaaat acgcagaagc tatagctagt gcaagttgcg atattagtac aggggaatgg
     1201 gtgcatatcc ataatactgc gggaattaga ggtcgtggag ataaggaatg aaaatgaaaa
     1261 agataatggg ttatagaagg gaagatggaa aatttggttt aagaaataaa gtcattatca
     1321 taccaagtgt acattgtgct aataaagtgt gtgaaaatat agctagaaaa tgtaatggag
     1381 cagtttatat caaccatcag catggttgct cccagcttga atttgatgct ttacaaacta
     1441 gagatgtttt aataggtcat gggagcaatg ccaatgtttt tggtgtttta attatagggc
     1501 ttggttgtga ggtaatacaa gccaaagcag tagcagaaaa aatcaaagaa gcaacgcctt
     1561 ataaaaaggt tgaatattta gtgatacaag aatgtggtgg tagtaaaaat accattgaaa
     1621 atggtatcaa aatagtcaat gaaatgcttg aaagtgctgc aaaattacaa aaaagtgaag
     1681 gagatttcag tgatttgatt ttaggcacag aatgcggtgg aagtgatagc tatagcggac
     1741 ttagtgctaa tcctgcttta ggaagtttga gtgattttgt aatcgatgag ggtggtgcgg
     1801 taattttagc agaaactaca gaacttatag gttgtgaagc catactagct aagagagcaa
     1861 aaaacgatga aatagctaaa aaggtatatg ataagatttt agcttatgag aatttagtca
     1921 aatcttttca tgctgatatt cgaggagcaa atcctagccc aggaaatatg gcaggcgggc
     1981 ttagtactat agaggaaaaa tctttaggct gtgtttataa ggcaggaact agaaccttaa
     2041 tggatgtgat tgattatgct aagcctgtag tttctaaagg tttaactttt atgaatacac
     2101 caggcaatga tatagaacaa cttagtgcta tggttgcagg tggagcaaat atttgtgttt
     2161 ttactacagg tcgtggcact ccaacgggtt ctgctatcgt gcctactatc aaaatgagtt
     2221 ctaatacttt ttgttatgaa aatatgaatg atgctattga tattaacgca ggaagcatta
     2281 tagatggggt aaaaacaaaa gaagaagtgc gtgatgagct tatagaatta atcgtgcgaa
     2341 tttcagatgg agaattggta aaagcagagc ttaacgagca aaatgatttt tcagtttgga
     2401 gacttgctac aacttgttaa agggtaaagt gatgaaacat gcaaattcaa taaagttaga
     2461 gttagtatgt aaaaaaatat cttggcgtat tttgcctttg attgttttga tgttttgtct
     2521 ttctatgctt gataggacaa atattagctt tgtgaaatct catatagaaa ttgatgcagg
     2581 catcggtgag gctgcttatg ctttgggtgc tggaatattt tttataggtt atgccatttt
     2641 tgaagtgcct tcaaatttat ttttgcataa attaggagca aaaatttggt tgagccgtat
     2701 aatgatcact tggggtcttg taactatggc aatgattttt atacaaggag aaataagttt
     2761 ttatgtatta agatttttat tgggtttaac tgaagcaggt tttagtccag gcattatttt
     2821 ataccttagt tattttttcc cagctatata tcgatctaag acttatggaa tttatcaaat
     2881 gggagttcca attgcttttg tttttggttc tttaattagc ggttttatac ttgattatac
     2941 accaaatata tattttaaaa attggcaatg gatgttttta atagaaggag gtattaccgt
     3001 tttagtaggt attttttgtt tattttatct tgattcacat ccaaaagatg caaaatggtt
     3061 agatataaaa gaaaaagata ttttgctaaa acatattgaa atttccaata ctaaagctaa
     3121 ggattattct ataaaagata tttttaaaag tattttggtg tggaaatttg tatttgttta
     3181 tttttgtatt caattaagtg tttatggagt gcttttttat ttaccaagta aaattgccca
     3241 aatattgcaa ataaatgtag gttttgaagt tggactttta aatgccatac cttggatttt
     3301 gtttttatcg ccttgccaat atttacctca ttggctgata aaaaacattc ttggaattta
     3361 catgcgattt tatttttact gctagcaagt ttgagcatga tagcttcaac ttttgttaca
     3421 aatttggcgg catttttatt ttttattagc ttggctgcta taggttttat agtcattcag
     3481 cctatatttt ggaatttgcc aactcaagtt ttaaaaggaa aaggagccgc ggctgctatt
     3541 gctcttatag gatccttggg aaatttagga ggttttgtgg ctcctacttt aaaaacatat
     3601 atagaaaatc attttggagt tgagtttgga cttatagtgt tagcattgat agcaatttta
     3661 ggtgtattgg tattaataca tttaaaaata actttaaatt tagataaagg agaataaatg
     3721 gatttaaaaa ttaaaaataa ggtttgtatt attacaggag gggctaaagg tattgggtat
     3781 ggtattgcta aattatgggc aagcgaaggc ggaattcctg taattttttc aagatctatg
     3841 cctaaagagc acgataaaga attaaaaaaa ttatctagtg agtatgaatt ttatgaaatt
     3901 gatttaaaaa attatgagca aattgaaaag cttgtaaaaa aagttgctat caaacatggt
     3961 ggaatctatg ctcttgtaaa taatgcaggt acaaatgata atttacatat tgaaaataca
     4021 agtactcaag atttgataaa atcttatgaa aataatcttt ttcattatta tactatgacc
     4081 aaagaatgtt tgccttacat taaaaaagaa caaggcagta ttttaaatat agtgagtaaa
     4141 acaggcatca caggacaagg aagaacttca gcttatgctt cggccaaagc ggctcaaatg
     4201 ggttttacta gagaatgggc ttgtgctttt gctaaggata atgttagggt aaatgctata
     4261 gctcctgctg aagttatgac tcctctttat gaaaaatggc tgcaaaattt tcctaatcct
     4321 aaagagcaat atgaaaaaat cgcaaaagct atacctttag gccatcgttt tactaccata
     4381 gaggaaattg caaatacagc ggtttttaca cttagtcccc ttgcttcaca tactacaggg
     4441 caaattttaa tgccagatgg aggttatgtg catttagata gagcattaaa ttgggatgaa
     4501 aactaaggag taaaaaatga ctgattctaa aaatataaaa atagctattg ttttggtaac
     4561 ttctcttttc tttttatggg gagtaagcta tggacttatt gatgtgatga ataaaaattt
     4621 tcaaaatcat cttcatatta gccagcatga aagtggtttt ttacagtttg cttattttgg
     4681 tgcttatttt atcatagcct tacccgcagg ttatatagcc aatagatttt cttataaaat
     4741 gggaatcatt tttggcttag ctctttatgc cataggagct ttgcttatta tacctgctac
     4801 aaatttggct tcttttcatt tgtttttgtt tgcgtttttt attttagctt gtggtattgg
     4861 ttctttagaa actagtgcaa atccctacat gacaaagctt ggtgatgaaa aaaatgcgag
     4921 ttttagaatc aatgctgcgc aaagttttaa tggtttgggg caatttgtag gacctattat
     4981 aggcggagct ttatttttat ctattactaa acaagaagag ggtgcgagta aagagcaaat
     5041 cgaggctgca ttggtagcta atatgggaaa tgtccagctt gtttatatag gaattgctgt
     5101 cattgttatt ttgattttaa ttgcttttgt tgcaaataag cttccagaag gaagtgcggt
     5161 aagtgatgat tataagcaaa aagatgattc taagcccata tatgttttta aacacagaca
     5221 ttttaactta gggcttttag cgcagttttt gtatatagcc aatcaagttg cagcaggagc
     5281 tttttttatc aattatgttg tagaacataa tgaaggttta aaagatgcgc aaggtgctta
     5341 ttatttttct atagctttgg ttgcatttat gctagggcgc attgtttcta ctcctttgat
     5401 gaagataatc aaaggtgaaa aaattttagg attttattct ctaatcaatg tgcttatatg
     5461 ctttagcttg tattttgcta gcgggttttt tagcatagtg cttttaatag ctttattttt
     5521 ctttatgtct atttcttttc ctactatttt tgcggtagca acaaaaaatt tacctttaaa
     5581 tcaagtaaaa ctaggcggtt ctttgcttgt gatgagcata gtaggtggag caattatgcc
     5641 tataattata ggttttatta atgatcatta tggtacaggc gctgggtatt tagcaatggc
     5701 acctttgttt ttatatgtgg cttggtatgg ctttataggc tcaaaagtga gaaaaaatgc
     5761 aaaagatttt tgatgctcat ctacaccttt gggatttgga aaaaatacct atttcatgga
     5821 taaaagacga tgaaaaatta gagcaaaatt atgatttttt taggatgaaa caagaatata
     5881 aagaatttga atttataggt gctatgtatg ttgaggttaa tagtgatgat ttagaaaagg
     5941 aagctttgtt tgctttggag caaaaaaagc ttcataatct tttgttttgt ttagcggatt
     6001 ttaagcataa agaagagctt agttctttta gggaagtaat gcacacgagc aaaaaaggag
     6061 ctaaaagact atttgaagca gactttgaag aaaaaataga aattttaaaa actttcaata
     6121 taccttttga ggcttgtatt aaaaatgaag agcttggttt tttagaaaaa tttttaagta
     6181 aaaatccaaa tttaaaagtg gttttaaatc atctaggaag tccaaaaata aatcgtttaa
     6241 atgaatacaa aaaagattta agttttttga aaaaatttca aaatttatat atcaagcttt
     6301 ctattcctga tggtttttcg caagaaactc ctaaggaatt tatttttgag ctttttgctt
     6361 ttttaaaaga aaattttagt gagaataaat ttatatttgg gagcaattat ccagtggcaa
     6421 agataactcc agctaagtgg gccaagctta ttatagagag taaaattttt gatgatctag
     6481 ataaaatatt ttacaaaaat gctttattaa tttataaagg aggatgaatg caaagatacg
     6541 gtcaaatcat aaaaataaaa aaagaaaaaa tagaagaata caaagagctt cacacaaagc
     6601 cttatgaagg ggtttgtgag atgattaagg aatgcaatat acaaaattat tccatttatt
     6661 tgtttgggga atatttattt gcatattttg aatatatagg tgctgatttt gaagcagaca
     6721 tggctaaaat ggcaagagat gaaagcacac aaaaatggtg gaaagtaaca gatccttgtc
     6781 aaatatcttt aggctatgca ggacaaaaat ggctaaatat ggaagaagta tttcacttag
     6841 actaaaaaag gagaaaaaat gacaacttat ttaaattata ttgatggaaa gtttatccca
     6901 cataatggag aatttatcga agttttaaat ccagctacca aagaagtgat ttcaagagta
     6961 gctagcgctt ctttagaaga tactaaaaga gcgattgaag cagctaaaaa agcacaaaaa
     7021 gtttgggagg ttaaaccagc gattgaaaga gcaaatcatt taaaagaaat agctagttta
     7081 atacgcaaaa atgctaattt cttaaccgaa gttttaatgc aagagcaagg aaaaaccaga
     7141 gttttggcta gcatagagat taattttaca gcagattata tggattatac ggccgaatgg
     7201 gctagaagat atgagggtga aatcatacaa agcgataggg ctaatgagca tatatattta
     7261 tataaaagtg ctattggggt aattggtgga attttacctt ggaattttcc atttttctta
     7321 atcgcaagga agatggcacc tgctttacta acaggaaata ctattgttat aaaaccaagc
     7381 agtgaaactc caaacaatgc ttttgaattt gcaaagcttg tttcgcaaag ttctttacca
     7441 aaaggtgttt ttaacttagt tgcaggtaaa ggcagtgtag taggatatga attatcaagc
     7501 aatgaaaata taggtatggt aagtcttaca ggaagtgttg aagcagggac tagagtaatg
     7561 gaagctgcag ctaaaaatat tatcaaagtt tctttagaac ttggtggaaa ggcgccagct
     7621 atagtgtgca aagatgcgga tattgattta gcagtagaag cgattaaagc aagtagaatt
     7681 tgcaataacg gacaagtttg taattgtgct gaaagagctt atgtgcatac aagcgtttat
     7741 gatgaatttg tagacaaatt tgtaaaagcc atgagtaaag taagtgttgg aaatacctta
     7801 aaaggtgatt ttgatatggg accattggtc aatcaagcag gagttgataa tgctttggca
     7861 atgcttcaaa gagctacagc taaaggagcg attgtagaat gcggtggaaa aatcactgat
     7921 acaagtgggt attattttcc cgcaagcgtt cttactaatg ttaaacacga agatgagatc
     7981 atgcaaaaag aaatttttgc tccgatttta cctattgcta aatttgatac acttgatgaa
     8041 gctattgata tggcaaatga ttgtgaatat ggtcttacaa gttctattta tacacaaaat
     8101 ttagatatag caatgagagc tagcagagaa attaaatttg gtgaaactta tattaatcgt
     8161 gaaaattttg aggctatgca aggttttcat gcaggcttta gaaaaagtgg cataggcgga
     8221 gctgatggaa aacatggtct tgaagaatat ttagctaccc atgtggtata tttgcagtat
     8281 aatactaata aacaatgatt tttatcctat ctaaat
//
LOCUS       DAPOLW010000069         8109 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.069, whole genome shotgun sequence.
ACCESSION   DAPOLW010000069 DAPOLW010000000
VERSION     DAPOLW010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8109)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8109)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8109
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.069"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..69
                     /locus_tag="ROE18_001099"
     CDS             <1..69
                     /locus_tag="ROE18_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HDX3651280.1"
                     /translation="WANDRFIKLQEKLMGFKSEIKT"
     gene            53..1336
                     /locus_tag="ROE18_001100"
     CDS             53..1336
                     /locus_tag="ROE18_001100"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HDX3651281.1"
                     /translation="MKLKLENSFITDNTLECEKECFFLQTTQNAKFHAQALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQ
                     DHLDFHGTFENYKEAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISTIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGKIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            1340..1651
                     /locus_tag="ROE18_001101"
     CDS             1340..1651
                     /locus_tag="ROE18_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HDX3651282.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKV
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            1648..2742
                     /locus_tag="ROE18_001102"
     CDS             1648..2742
                     /locus_tag="ROE18_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HDX3651283.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNAKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWVGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDVYWGDIGVDFVVRENKIYVNNVRKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKITNFTSNLGLTVNA
                     SLVVTKIDPKSKVSNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            2739..3584
                     /locus_tag="ROE18_001103"
     CDS             2739..3584
                     /locus_tag="ROE18_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HDX3651284.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNEKLAQMIQNL
                     IIQYL"
     gene            3595..5493
                     /gene="tkt"
                     /locus_tag="ROE18_001104"
     CDS             3595..5493
                     /gene="tkt"
                     /locus_tag="ROE18_001104"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HDX3651285.1"
                     /translation="MNIQILQEQANTLRFLSADMVQKANSGHPGTPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFK
                     GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFVLSRQKLKALNEP
                     VFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFE
                     KQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFERFGFSVSK
                     LVNFILSK"
     gene            5495..6604
                     /locus_tag="ROE18_001105"
     CDS             5495..6604
                     /locus_tag="ROE18_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDX3651286.1"
                     /translation="MNTNFKFQNNTLFIFGIWDKTSIYKLKIKDFLALIQSKEVIFDF
                     KDLKAIDTAGVRFFLALENDLKNKNIKITKEGLNSRFQTLFELCEKNYQRLGKTKKSH
                     QNFSEYFIDLGKLSLELLKILRKFINFTGAFFTSLFLCLKNPKNFRFIAFLYHIENSA
                     FKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLMGISATRELAPLIAAIVIAG
                     RSASSYTAQIGVMKITDEIAAMNTMGFRSFEFIVIPRVMALVVAMPLIVAISDAISII
                     GGMMVAKLNLDISFAEFLRRFREAVDIKHIFIGLAKAPIFGFLIGLIACFRGFEVKNT
                     TQSIGIYTTKSVVNAIFWVIAFDTLFSVILTSTGI"
     gene            6605..7327
                     /locus_tag="ROE18_001106"
     CDS             6605..7327
                     /locus_tag="ROE18_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDX3651287.1"
                     /translation="MVIKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGGSGSGKSVL
                     LKQMLMLEHFDDGEYEILGYKLKNINEEDALALRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDENSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKRFME"
     gene            7330..>8109
                     /locus_tag="ROE18_001107"
     CDS             7330..>8109
                     /locus_tag="ROE18_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HDX3651288.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGIKAPVRLLGVEVGSVEEISIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFIQLQGGSKNSKDLVSMQGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMADNISLSAQN
                     FNSSLKNIKESTMILKNFIKKADEKLNTYDDIKASLMQNLEL"
BASE COUNT         2947 a         1198 c         1425 g         2539 t
ORIGIN      
        1 tgggcaaatg atagatttat caaactccaa gaaaaactca tgggatttaa aagtgaaatt
       61 aaaacttgaa aattcattca ttacagataa caccttagag tgtgaaaaag aatgcttttt
      121 tttgcaaacc acacaaaatg ctaaatttca cgctcaagcc ttagaaaaag gtgcaaaaat
      181 cattgatgta aatgagtgta aaaaactttt aaaaatcgat gaaaagattc aaatcatagg
      241 aatcacagga accaatggca aaaccacaac cgcagcagcg atttattcta tcttattgga
      301 tttaggttat aagtgtgggc tttgtgggac aagaggagct tttatcaacg atgaacaaat
      361 cgatgaaaaa tccttaacca cctcccctat tcttaaaacc ttagaatacc tacaaatagc
      421 cactcaaaaa aaatgtgatt ttttcatcat ggaagtaagc tcacacgcac tcgttcaaaa
      481 ccgcatcgaa ggcttaaatt ttgctgctaa aatttttacc aatatcactc aagatcattt
      541 agattttcac ggtacttttg aaaattataa agaagcaaaa gaactttttt ttaccgatga
      601 gagtttaaaa tttatcaaca aagatgcttt ggctattaaa tttaatgtgc gtaatgcttt
      661 tacttatggc atagaaaatc ctgctttata tcaaatcaaa gcttattctt tagaagaagg
      721 cattagtact attgtaacaa ataaaaatca aacttttcac atagactcgc ccttgctagg
      781 actttttaat ctttacaatc ttctagttgc tagtgcttgt gtgaatgaac tcgtaaagcc
      841 tgatttaaaa gacttggaaa aagctatcag tggatttggc ggggtttgtg gcagggtaga
      901 acaagtagca aaaggtgtga ttgtagattt tgctcatacg cctgatggca ttgaaaaagt
      961 gcttgacact cttaaaaata aaaaactcat cgttgttttt ggagcaggtg gagatagaga
     1021 taaaaccaaa cgccctttaa tgggaaaaat cgtcgaacat tttgcaaaaa ttgctatcat
     1081 tacaagtgac aatccacgca gcgaagaacc aaaaaccatc atggaagaaa ttttatcagg
     1141 ctttactaaa aaagaaaaag ttttaatgat agaagataga aaagaagcta taaaaaaagc
     1201 tttagaacta aaagaaaatg acgatttagt cgttatttta ggcaaaggtg atgaaactac
     1261 tcaagaaatt aaagggataa aatatccttt tagtgataaa gtagttgtta atgaaatttt
     1321 aaaaaatcaa ggataatcaa tgtttgaaaa tatggatttt tctaaaatgg gagaactttt
     1381 aaatcaagtt caagaaaaag caaaaaatat agaactagaa cttgcaaatc gtgaatttag
     1441 tgccaaaagc ggagcaggac ttgttaaagt aagtgccaat ggaaagggtg aaattatcga
     1501 tgttagcatt gatgattctt tacttgaaga taaagaatcc ttgcaaattt tacttatttc
     1561 tgcaattaat gatgttttgg ctatggttgc acaaaatcgt tcaagtatgg cgaatgatgt
     1621 tttaggcggt tttggaggta tgaaattatg aaaaaaattt taattatttg catgcttttt
     1681 actttgtctt ttggtataga aagacctaaa tttgaagatt ttttagcagg ttatgaaaga
     1741 aataaggcaa gcatgctcaa ctatgaagga atgccagctt ttgcactcag tgaaaattta
     1801 cttgctgtgt taaaacagcc taatgctaag cttaacaaat atgtaaaata cgatccattt
     1861 ttaaatttat atcttgtaag aactgacttt agcctaatcc ctactcctat gggtgatgaa
     1921 gaaaaactta ctcgtaatga ttgggttgga atttgggatc ctaataaacc ttatataggg
     1981 catattaagt atttagctca aaatattgat gaaaaagatc aacttgattt taattctaaa
     2041 ataggacttt tagggactcc atgctgtgaa atgatgggga ttgctttaaa taatagctct
     2101 tttataggca atcgctattt aaaacatttt atgaaatata acgatgttta ttggggggat
     2161 attggcgttg attttgttgt tcgagaaaat aaaatttatg ttaacaatgt aagaaaaaat
     2221 ccacaatttt taatcaatga tcaagttata agtgttgatg gcttacccgc caatgattta
     2281 agaaaactca atgaaaaaat tctttttgca gatcgcggaa gcactcttta ttttcaagtg
     2341 ttgcgtgata atatggattt aaatatttct actgaagttt ttgcaaaaga tttgagcaaa
     2401 tttaaccttc ctgattctaa accaaaacca aaaattacaa atttcacaag caatcttggt
     2461 ttaacggtta atgctagtct tgttgtaact aaaatagatc caaaatcaaa agtatcaaat
     2521 gcaggattta tggtaggaga taaaatttta cgcgttaata atattatttt aaataatttt
     2581 aaagaattac aaaatatttt aagtgctggt aatgacttta gcatcttaat tgaacgcaaa
     2641 agtactaaat tacctttatc aaatttcaac aatgaactag gcggaaatgc caactcaggt
     2701 ggcgatggta aatttcaatt tttcataagg cttactaagt gaatttaaaa gaacttttta
     2761 tccatcactt agaaaaaaat ctacccaaag ttgaaagctt tcatcctttt ttcaatgaag
     2821 ctttagcact tatgttaaaa gcaggaggaa agcattttcg cgcacaattg cttttaagcg
     2881 tagtgcaaag caataaacct gaacttttaa atcaagcttt agatgtagct ttagctttgg
     2941 aatttatcca tacttattca ctcatacacg atgatttacc cgctatggat aatgcggact
     3001 ttagacgagg aattccaacc ttacacaaaa gctacgatga aactacagcc atcttagtag
     3061 gtgatgcttt aaataccgaa gcttttttag ttctaagtca tgctcattta aaagatgaaa
     3121 tcaaaatcaa actcatcaaa acccttgcct ttaatgcagg acttaatgga atggtcatag
     3181 gacaagctat tgattgtttt tttgaagaca aaagactgag tttaaatgaa cttgagtttt
     3241 tgcatacaca taaaaccgca agattgatcg ccgcagcttt aaaaatgggt tgtgaaattt
     3301 gcgaacttaa caacgaagaa agcaatcaaa tttacaaact tggtttaaaa ctaggactga
     3361 tttttcaaat caatgatgat attatcgatg taactacaag tcaagaacaa agcggaaagc
     3421 ctaccaacaa cgatattcat aaaaattctt ttgtcaattt gcttggactt gaacaagcca
     3481 taaaaacaaa agaaaatctt cttagtgaat gcgaacaaga cttagaaaaa cttaatgaaa
     3541 aactcgcaca aatgatacaa aatttaataa ttcaatactt ataaaggcaa aataatgaac
     3601 attcaaattt tacaagaaca ggcaaatact ctaagatttt taagtgctga tatggtgcaa
     3661 aaagcaaact caggacaccc aggtacacct ttgggcttag cagatatttt aagtgtttta
     3721 agttatcatt taaaacacaa tcccaaaaat ccaacttggc taaaccgaga tagacttgta
     3781 ttttcaggcg gacatgcaag tgctttgctt tatagttttt tacatttaag cggctatgac
     3841 ttaagcttag aagatcttaa aaatttccgc caacttcatt ctaaaacccc tggacaccct
     3901 gaaatttcaa ctcttggagt agaaatcgct acaggccctt taggacaagg cgttgccaat
     3961 gctgtaggct ttgctatggc agcaaaaaaa gcacaaaatt tgctaggcag tgatttaatc
     4021 gatcataaaa tttattgtct ttgcggagat ggggatttac aagaaggcat ttcttatgaa
     4081 gcttgttctt tagcaggact tcacaaactt gataacttca tacttattta tgatagcaac
     4141 aatatctcta tagaaggcga tgtaggttta gcctttaacg aaaatgtaaa aatgcgtttt
     4201 gaagcacaag gatttgaagt tttaagtata aatggacacg attatgaaga aatcaataaa
     4261 gccttagaac aagctaaaaa atccacaaaa ccttgtctta tcatcgcaaa aacaactata
     4321 gcaaagggtg caggagagct tgaaggcagt cataaaagcc atggcgcacc tttgggtgaa
     4381 gaagtgatta aaaaagccaa agaacaagca ggctttgatc caaatatcag ttttcatatc
     4441 ccacaagcaa gcaaaatccg ctttgaaagt gctgtagaac ttggggattt agaagaagca
     4501 aaatggaaag ataagcttga aaaaagtgct aaaaaagaac ttttagaaag gctattaaat
     4561 cctgatttta acaagatagc ttatcctgat tttaaaggaa aagatcttgc tacaagagat
     4621 agtaatggtg aaattttaaa tgttttagct aaaaatttag aaggattttt aggtggaagt
     4681 gcagacttag gcccttcgaa taaaacagaa cttcacagta tgggagactt tgtagaaggt
     4741 aaaaatatcc attttggtat cagagaacac gctatggcag cgattaacaa tgcttttgca
     4801 agatatggaa ttttcttacc attttcggca acttttttca tctttagcga gtacttaaaa
     4861 cctgccgcaa gaatagcagc tctaatgaaa atcaaacatt ttttcatttt cacacacgat
     4921 agcataggcg tgggcgaaga tggaccaaca caccaaccta tagaacaact tagcactttt
     4981 agagctatgc caaatttttt aacctttaga cctgctgatg gggtggaaaa tgtcaaagct
     5041 tggcaaatag ccctaaatgc tgatattccg agtgcttttg tgctttcacg ccaaaaactc
     5101 aaagctctaa atgaacctgt ttttggagat gtaaaaaacg gagcgtattt actcaaagaa
     5161 agcaaagagg ctaaatttac acttctagca agtggaagtg aagtttggct ttgtctagaa
     5221 agtgcaaacg aacttgaaaa acaaggtttt gcttgtaatg ttgtttccat gccttgtttt
     5281 gaactttttg aaaaacaaga taaagcttat caagaaagat tgttaaaagg tgaagttata
     5341 ggtgttgaag cagcacattc taatgaactt tataaatttt gccataaagt atatggcata
     5401 gaaagttttg gagaaagtgg taaagacaaa gatgtgtttg aacgctttgg atttagcgtt
     5461 tcaaagcttg taaattttat ccttagcaaa taaaatgaat acaaatttca aatttcaaaa
     5521 taatactctt tttatctttg gaatttggga taaaacaagt atttataagt taaaaataaa
     5581 agatttttta gctttgatcc aaagcaagga agtgattttt gattttaaag atctaaaagc
     5641 aatcgatacc gctggagtga gatttttcct tgctttggaa aatgacctta aaaataaaaa
     5701 tattaaaatc accaaagaag gcttaaattc acgctttcaa accctttttg aactttgtga
     5761 aaaaaactac caaagactag gcaaaacaaa aaaatcacat caaaatttca gtgaatactt
     5821 tatcgatctt ggaaaattaa gtttagaact tttaaaaatt ttaagaaaat tcatcaattt
     5881 cacaggagct tttttcacaa gtcttttttt atgcctcaaa aatcctaaaa attttcgctt
     5941 tattgctttt ttatatcata tagaaaattc tgcttttaaa gccttaccta tagttatttt
     6001 aaccgctctt ttagtaggag tggttttagc ctatcaggct gcttaccaac tcgcacaatt
     6061 tggagccaat attttcatag tggatttgat gggaatttca gccactagag aacttgcacc
     6121 tttaatcgct gccatagtga tcgcaggaag aagtgcaagc tcttataccg cacaaattgg
     6181 ggtgatgaaa attactgatg aaattgcagc tatgaatact atgggttttc gttcttttga
     6241 atttattgtt attccacgtg tcatggcttt ggtagtagct atgcctttaa tcgttgccat
     6301 tagcgatgca atcagtatta taggtggaat gatggttgca aaattaaatc ttgatatttc
     6361 ttttgccgaa tttttaagac gctttagaga agctgtagat ataaaacata tctttatagg
     6421 acttgcaaaa gcacctattt ttggattttt gataggactt attgcttgtt ttcgtggttt
     6481 tgaggtaaaa aacactacac aaagtatagg aatttataca acaaaaagcg ttgtaaatgc
     6541 tattttttgg gtgatagctt ttgatacttt attctctgtt attttaactt ctacaggaat
     6601 ttaaatggtt attaaagcac aaaatatcat tacaaaattt ggagaaaaaa ttgtccatga
     6661 tggcgtaagt tttgaaatca aaaaaaacga aatttttggt attttaggag gtagtggaag
     6721 tggaaaatcc gtccttttaa aacaaatgct tatgcttgaa cattttgatg atggagaata
     6781 tgaaatttta ggctataaac ttaaaaatat caacgaagaa gatgcacttg ctttgcgtaa
     6841 aaaatggggt gtggtttttc agtttgctgc actttttagc ttttttaatg tttatgaaaa
     6901 tatcgctatt cctttaaaag aatacactca tttagatgaa aatagcatac aagaactggt
     6961 tttaatgaag ctaaaaatgg taggcttaaa cgaaagtgtt ttaaaacaat ttccaagcga
     7021 acttagtggc ggtatgcaaa aaagagtggc aattgctaga gctttagcac ttgatagtaa
     7081 attgcttttt ttagatgaac ctacttcagg acttgaccct catagtagtc gtgaatttga
     7141 cgatttggtt ttagagttaa aaaaaagttt tgatctaaat atcattttgg ttacacatga
     7201 taaagaaagt atgaaaaatt tactcgatcg ttttatcatt ttagaaaata aaaaagttgg
     7261 attttgcggc acttatgaag aattacgctt gcaaaatgaa cgacttttta aaagatttat
     7321 ggagtaaaag tggaaaatag agcaaattat ttttttgtag gactttttgt ttttggagta
     7381 ttttttgcaa gccttggttt catactttgg cttggtggat actctaaaga agaaagtttt
     7441 aagtattatg aaattcacac acaagaatcc gttgcaggac ttggcataaa agcacccgta
     7501 aggcttttgg gcgtggaagt aggtagcgta gaagaaatca gcatttacaa tcaagatgaa
     7561 ctcggcgtta acatacgcat caaggtcaaa aacaataccc ctataaaaga agatactttt
     7621 gctactttgc aacttcaagg tatcacagga cttaaattta tccaacttca aggcggaagt
     7681 aaaaatagta aagatctagt atctatgcag ggaaaacttc cagtcattcc ttttaaagaa
     7741 agttttttag cgaccataga cagacaaagt gaacatattt tttctttggt taaaacggcc
     7801 gatgataaat caaaagaact tttaagcgaa aaaaatctta aaaatctaga aatccttttg
     7861 caaaatctag cagaattaag tgcaaattta aacgctaatt ctaaaaattt aagtcttaat
     7921 ctttcaaacg caagtttaaa aataggaaaa atggctgata atataagcct tagtgcgcaa
     7981 aatttcaact ccagtcttaa aaacataaaa gaaagcacaa tgattttaaa aaatttcata
     8041 aaaaaagctg atgaaaaatt aaacacttat gatgatatta aagcatcttt gatgcaaaat
     8101 ttagaactt
//
LOCUS       DAPOLW010000070         8012 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.070, whole genome shotgun sequence.
ACCESSION   DAPOLW010000070 DAPOLW010000000
VERSION     DAPOLW010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8012)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8012)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8012
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.070"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            11..397
                     /locus_tag="ROE18_001108"
     CDS             11..397
                     /locus_tag="ROE18_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HDX3651289.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGAAK"
     gene            467..937
                     /gene="rpsG"
                     /locus_tag="ROE18_001109"
     CDS             467..937
                     /gene="rpsG"
                     /locus_tag="ROE18_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HDX3651290.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            950..3025
                     /gene="fusA"
                     /locus_tag="ROE18_001110"
     CDS             950..3025
                     /gene="fusA"
                     /locus_tag="ROE18_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HDX3651291.1"
                     /translation="MSRSTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPTELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLASEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            3054..3130
                     /locus_tag="ROE18_001111"
     tRNA            3054..3130
                     /locus_tag="ROE18_001111"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3088..3090,aa:Arg,seq:cct)
     gene            3148..3297
                     /locus_tag="ROE18_001112"
     CDS             3148..3297
                     /locus_tag="ROE18_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651292.1"
                     /translation="MIKIAFFITFVISFLAAQSPVNFKEDNNITKERNIFKEQSPKRI
                     KIPTH"
     gene            3303..4004
                     /locus_tag="ROE18_001113"
     CDS             3303..4004
                     /locus_tag="ROE18_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HDX3651293.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILADFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIKLIEKNLKSNKIQGDIFHDDFNQFQIIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLAKTNSMLKPNGTLYFCYEALALDE
                     ICFILKDMKMKITKLCFVHTHQNKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFKLKSYDI"
     gene            3994..4368
                     /locus_tag="ROE18_001114"
     CDS             3994..4368
                     /locus_tag="ROE18_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HDX3651294.1"
                     /translation="MIFDKNFSYAFDENACEKCGGKCCTGESGNIFASKEELEALRKH
                     LNLESKEFAEKYLRKVGFKMSFKEVECEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLS"
     gene            4341..5618
                     /locus_tag="ROE18_001115"
     CDS             4341..5618
                     /locus_tag="ROE18_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HDX3651295.1"
                     /translation="MYRYLLFVLAAFFLAACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKQYKEARDEFLSLYQDYNNTNFLENAFLLTLANNLDKKEEINNIAKPYLDKS
                     DNLKRLSALYALNSNDINNAQKLMKELLTKKDSDPINLELYGDILVKKNDLKNATKYY
                     RSAYNQVQNEEILFKLIGIYAILNDTLNIKNVLEFSRKTNGCTLKTCVLLAKIYFDEK
                     NIEALKSIYKELYQLTKNKSFVLALVELLNSQGKTEEALKISLQYDLDDDIKLALYQN
                     LKRFDDAKKMSLALYHKTKNKEYLLRAAVFEFEAANEAKKITPKVIDSVKEKFEQAID
                     KDSNALYLNYYGYLLIDYDLDVKKGIELVKLALEKDPQNLYYLDSLAWGYYKLGDCKQ
                     AWEILKQTLDDKEFANSDESKVHIKAIKACIKP"
     gene            5615..6391
                     /gene="trpC"
                     /locus_tag="ROE18_001116"
     CDS             5615..6391
                     /gene="trpC"
                     /locus_tag="ROE18_001116"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HDX3651296.1"
                     /translation="MILDKIFEKTKEDLKERKLKLPYDMLGRSLASNPFFPKDVIKAL
                     KRVEKEVKIIAEVKKASPSKGVIREDFDPLSIALNYEKNKAAAISVLTEPHFFKGSLE
                     YLSLIRRYTQIPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFAGADIIGINHRNLEDFTMDMSLCEKLIPQIPNSKIIIAE
                     SGLENKEFLEHLQNLGVDAFLIGEYFMREKDEGKALKALL"
     gene            6401..6886
                     /locus_tag="ROE18_001117"
     CDS             6401..6886
                     /locus_tag="ROE18_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HDX3651297.1"
                     /translation="MQYLYAPWRSEYFEKEKSICPFCDCANKIKSDEELGVIFRAKHC
                     FGVMNRYPYSAGHFMVIPYIHEEHIENLSDEIWQEMSYFVRLGVKILKEQIHANGVNI
                     GMNLSKDAGAGIAFHCHYHLVPRWSGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNA
                     Q"
     gene            6876..7874
                     /gene="mnmH"
                     /locus_tag="ROE18_001118"
     CDS             6876..7874
                     /gene="mnmH"
                     /locus_tag="ROE18_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HDX3651298.1"
                     /translation="MLSEVEFVEFQKENFSFLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKAMGASYICQNTAKHILEITQNFRIGEKVGIYCSRGGLRSKS
                     IAVILSELGFRVVRLKGGFKAYRTFVTHYFENEINFDFFALCGNTGCGKTELLEQLPQ
                     AINLEKMANHLGSSFGDILGKQPTQKAFEAELFHNIQNLENFAFIESESRKIGDIILP
                     LKFYEKMQKAFKIYCFCSLENRVRRIQKIYQEKMTPLKFQQCVQKISPYISLNLRQDL
                     LQSYERKEWQKLIVMLLEYYDKTYKKPDKIDLELNTDDILKAKEELLGYFKTQLLF"
BASE COUNT         2867 a         1032 c         1554 g         2559 t
ORIGIN      
        1 aggaattatt gtgcctacca taaatcaatt ggttagaaaa gagcgcaaaa aagttttaga
       61 aaaatctaaa tctccagcgc ttaaaaattg tccacaaaga aggggagttt gcactagggt
      121 ttatactaca acacctaaaa aaccaaactc agcgttaaga aaagttgcca aagtaagact
      181 tactagtggc tttgaagtga tcagctatat cggcggtgaa ggtcataact tgcaagaaca
      241 cagcattgtt ttagtgcgtg gtggtagggt aaaagactta ccaggggtta aatatcacat
      301 cgttcgtggt gctcttgata cagcaggtgt tgcaaaaaga acagtttctc gttctaaata
      361 tggtgctaaa cgtcctaaag caggcgctgc aaaataatca ttcatacaga caaatccgtt
      421 agatttgatt ttgtttgagt aaaatttaaa atttgaagga aaaataatga gaagaagaaa
      481 agctccggta agagaagttt tgcctgatcc gatttatggt aataaagtaa tcacaaaatt
      541 tattaattct ttaatgtatg atggtaaaaa aagcacagct acaacaatta tgtatggtgc
      601 tttggaagct attgataaaa aaggtggcga gaaaaaaggt attgatattt ttaatgatgc
      661 gattgaaaat attaagcctt tattagaagt aaaatctcgt cgtgtaggtg gtgcaactta
      721 tcaagttcca gttgaagttc gtcctgctag acaacaagct ttggcgattc gttggattat
      781 ttcttttgca agaaaaagaa gcgaaagaac tatgattgat aaacttgcag ctgagctttt
      841 agatgcagca aatagcaaag gtgcttcatt taagaagaaa gaagatactt ataaaatggc
      901 tgaagcaaat aaagcgtttg ctcactatcg ttggtaagaa ggagtgtgta tgtcaagaag
      961 tactccttta aagaaagtta gaaatatcgg tattgctgct catattgatg cgggtaaaac
     1021 gactacatct gaaagaattc ttttctttac aggtatgagt cataaaatcg gtgaagttca
     1081 tgatggtgct gcaactatgg actggatgga acaagagaaa gagcgtggga ttactatcac
     1141 ttctgcagct acaacttgtt tttggaaaga tcatcaaatc aaccttatcg acactccagg
     1201 ccacgtggat tttacaatcg aagttgaaag atctatgcgt gttcttgatg gtgctgttgc
     1261 ggtattttgt tcagtgggtg gggtacaacc tcaaagtgaa acggtttgga gacaagcaaa
     1321 taaatacggt gttccaagaa tagtatttgt aaataaaatg gatagaatcg gtgcaaattt
     1381 ttataatgta gaagatcaaa ttcgcaaccg tttaaaagct aatccagttc cacttcaaat
     1441 tccaatcggt gctgaggata attttaaagg cgtaatcgat cttgtaacta tgaaagcttt
     1501 agtttgggaa gatgatacta agccaacgga ttatgtagaa aaagaaattc caactgaact
     1561 taaagaaaag gcagaagaat atcgcacaaa aatgatagaa gcagtttctg aaacttcaga
     1621 tgagttgatg gaaaaatatt taggcggaga agaattaagt cttgaagaga ttaaaacagg
     1681 gattaaagca ggatgtttaa gtctttctat cgttcctatg ctttgcggta cagcgtttaa
     1741 aaataaaggg gttcaacctt tacttgatgc tgttgtggct tatttgccag ctcctgatga
     1801 agtggcaaat atcaagggtg aatatgaaga tggcacagaa gtttctgtaa aatcaactga
     1861 tgatggcgag tttgcaggac ttgcatttaa aattatgaca gatccatttg taggacaact
     1921 tactttcgtg cgtgtttatc gcggttgttt agaaagtggt tcttatgctt ataactcaac
     1981 taaagataaa aaagaaagaa ttggtcgttt gttaaaaatg cactctaaca aaagagaaga
     2041 gattaaagtg ctttacgcag gcgaaattgg tgctgttgta ggacttaaag atactttaac
     2101 aggggatact cttgcaagtg aaaaagataa ggtaatcctt gaaagaatgg attttccaga
     2161 tccagttatt tctgttgcag ttgagccaaa aactaaagca gatcaagaaa aaatgtctat
     2221 tgctttaaat aaattagcac aagaagatcc aagttttaga gtttctacag atgaagaaag
     2281 tggccaaact atcatttcag gtatgggtga gttgcacctt gaaattatcg ttgatagaat
     2341 gcttcgtgaa tttaaagttg aagctgaagt aggtcaacca caagttgctt atcgcgaaac
     2401 tattagaaaa actgttgaac aagaatacaa atacgctaaa caatcaggtg gtcgtggtca
     2461 gtatggacat gtattcttac gccttgaacc acttgagcca ggtagtggat atgaatttgt
     2521 taatgatatc aaaggtggag taattccaaa agaatacatt cctgcagttg ataaaggtgt
     2581 tcaagaagca ttacaaaatg gtgttttagc aggttatcct gtggaagatg ttaaagtaac
     2641 tgtttatgat ggaagttatc acgaggtgga ttcatctgag atggcgttta aacttgctgc
     2701 ttctatgggc tttaaagaag gtgctagaaa agcaggtgct gtgatcttag agcctatgat
     2761 gaaagttgaa gtagaaactc ctgaagatta catgggtgat gttattggag atcttaacaa
     2821 acgccgtggt caagtaaata gcatggatga gcgtggtgga aataaaatca tcacagcatt
     2881 ttgtcctttg gctgaaatgt ttggttattc tactgatctt agaagtcaaa ctcaaggtcg
     2941 tgcgacttat tctatggaat ttgatcacta tgatgaagtt cctaaaaatg ttgcggatga
     3001 aatcatcaaa aaaagaaacg gttaaatttt tagcgggatt tttcccgctt tctgtcctcg
     3061 tagctcagca ggatagagcg caaaattcct aattttgagg ccgtgagttc gaatctcgcc
     3121 gtggacacca ttttatgggg tgttattatg ataaaaattg ctttttttat aacttttgta
     3181 atttcttttt tggcagcaca aagcccagta aattttaaag aagataataa tataacaaaa
     3241 gaacgaaata tatttaaaga acaatctcca aaacgcatta aaattccaac gcattaaaat
     3301 atatgtcaga tctgattacg ctagcacaat tatcacaagg gtatcgttac aatagtgatt
     3361 ctttaatttt agctgatttt attttaaaac aaggaattaa aggcgctgtt tttgatgtag
     3421 gtgcgggctg tggtatcata ggtattttac ttaaaaaaaa tattgcaaat ttaagtttat
     3481 ctttgattga tattcaaaaa gaaaatataa aattgattga aaaaaattta aaatccaaca
     3541 aaatacaagg cgatattttt catgatgatt ttaatcaatt tcaaatcata aaaaaatttg
     3601 acttcatagt ttgcaatcct ccattttata gacaaggagc ttacaagagt gaagatcagc
     3661 ataaagctat aagtaaattt caggaatttt tacccttgca tagcttttta gctaaaacaa
     3721 attctatgct taagccaaat ggtactttgt atttttgcta tgaagcttta gctttagatg
     3781 aaatttgttt tattttaaaa gatatgaaaa tgaaaataac aaagctttgc tttgtgcata
     3841 cacatcaaaa caaaaaagca agacttgttt tgatacaggt aaaaaaaggt tcaaaatcgc
     3901 cttgtgagat tttacctcct ttttttgtat atgaaaatga aattttaagc aaacaaatgc
     3961 aagaaattca cttaagattt aagttaaaaa gttatgatat ttgataaaaa tttttcttat
     4021 gcttttgatg aaaatgcttg tgagaaatgc ggtggaaaat gttgcactgg agaaagtggc
     4081 aatatttttg cgagcaagga agaattagaa gcattaagaa agcatttaaa tttagaaagc
     4141 aaagaatttg ctgaaaaata cttgagaaag gtgggcttta aaatgagttt taaggaagtc
     4201 gaatgtgaag atggctttgc ttgcattttt tttgatactc aaaaaagaaa ttgtagtatc
     4261 tacgattttc gtccaaaaca atgcagaact tttccatttt gggaatattt taaaacacat
     4321 caaaaggaat tagaaaaaga atgtataggt atttgttatt tgtcttagca gccttttttt
     4381 tggcagcttg tggaagttca aaaatcaatg ttgtttatcc tgattataca aaatataaaa
     4441 gcaatgattt tgatttaagg gttatgaagg cttataatta tgagtattat aaacaataca
     4501 aagaagccag agatgaattt ttaagtcttt atcaagatta taataatact aattttttag
     4561 aaaatgcatt tttacttact ttagcaaaca accttgataa aaaagaagag ataaataata
     4621 tagccaagcc ttatcttgat aagagtgata atcttaagcg acttagtgct ctttatgctt
     4681 taaattcaaa tgatatcaac aatgctcaaa aacttatgaa agaactttta acaaaaaagg
     4741 atagtgatcc tataaattta gagctttatg gtgatatttt ggttaaaaaa aatgatttaa
     4801 aaaatgctac aaaatactat agatctgctt ataatcaagt gcaaaatgaa gaaattttat
     4861 ttaaactcat aggaatttat gcgattttga atgatacttt aaatattaaa aatgttttag
     4921 aattttcaag aaaaaccaat ggttgcactc tcaaaacttg cgtcttgctt gctaaaattt
     4981 attttgatga aaaaaatatc gaagctttaa aaagtatata taaagagctt tatcaactta
     5041 ccaaaaataa aagttttgta ttggctttag ttgagctttt aaattctcaa ggcaaaacag
     5101 aagaagcttt aaaaatttct ttgcagtatg atttagatga tgacattaaa ctcgctttgt
     5161 atcagaattt aaaacgcttt gatgatgcta aaaaaatgag tttagctctt tatcataaaa
     5221 caaaaaataa agaatatctt ctacgagcgg cagtttttga atttgaagct gcaaatgaag
     5281 ctaaaaaaat cactccaaaa gtaattgatt ctgtaaaaga aaaattcgaa caggctatcg
     5341 ataaagatag caatgctttg tatttaaact actatggata tttgcttata gattatgatt
     5401 tagatgttaa aaaaggtata gagcttgtga aacttgcctt agaaaaagat ccacagaatt
     5461 tgtattattt agattcttta gcttgggggt attataaact aggcgattgt aagcaagcat
     5521 gggaaatttt aaaacaaaca ttagatgata aagaatttgc aaattctgat gagagcaaag
     5581 ttcatataaa agcgataaag gcgtgtataa aaccatgata ttggataaaa tttttgaaaa
     5641 aacaaaagaa gatttaaaag aacgcaaact aaaacttcct tatgatatgc tagggcgttc
     5701 tttagcttca aatcctttct ttccaaaaga tgtgattaag gctttaaaaa gagtagaaaa
     5761 agaagttaaa atcatagcag aagtaaaaaa agcaagccct agcaagggag tcattagaga
     5821 agactttgat cctttgagta tcgctttaaa ttatgagaag aacaaagctg cggcgatttc
     5881 tgttttaact gagccgcatt tttttaaagg ttctttagaa tacttaagtc ttatacgccg
     5941 ttatacgcaa attcctttac ttagaaaaga ttttatcttt gatgagtatc aaattttaga
     6001 agctttggtt tatggggcgg attttgtatt attaatcgct aaaatgctaa gcatgaaaga
     6061 gcttaaaaaa ctgcttgagt ttgcaagaca tttaggtctt gaggctttgg ttgaaattca
     6121 tgataaagag gatttgagta aggctatttt tgctggagcg gatatcattg gtatcaatca
     6181 tcgtaattta gaggatttta ctatggatat gagtttgtgc gaaaaactta tcccacaaat
     6241 cccaaattca aaaatcatca tcgcagaaag tggtttagaa aataaagaat ttttagagca
     6301 tttgcaaaat ttaggcgttg atgctttttt aatcggcgaa tattttatgc gcgaaaaaga
     6361 tgaaggaaag gctttaaaag ctttgcttta aggagggaaa atgcagtatt tgtatgcacc
     6421 atggcggagt gagtattttg aaaaagaaaa aagcatttgt ccattttgtg attgtgctaa
     6481 taagatcaaa agcgatgaag aattaggcgt gatttttaga gcaaagcatt gttttggagt
     6541 gatgaaccgc tatccttatt ctgcagggca ttttatggtg attccttata tacatgaaga
     6601 gcatatagaa aatttaagtg atgaaatttg gcaagaaatg agttattttg tgcgtttggg
     6661 ggtaaaaatt ttaaaagagc aaattcatgc aaatggagtg aatatcggta tgaatttaag
     6721 caaggatgca ggagctggca tagcttttca ttgtcattat catctagtgc cacgctggtc
     6781 aggagataca aattttatca caaccatagg agaaactagg gtttgtggca ctaatataga
     6841 gcaagtttat caaaaacttg ttttggcttt taaaaatgct cagtgaagtt gaatttgtag
     6901 agtttcaaaa agaaaatttc tcttttttaa tcgatgcaag aagccctaga gaatttttgc
     6961 attctcactt gataggagct ttaaattttt atgcactcaa tgatgaagaa tatcaagaaa
     7021 taggaacaat ttataagaaa aatcaagctt tagctaaggc tatgggtgcg agttatattt
     7081 gtcaaaatac cgctaagcat atattagaaa tcactcaaaa ttttcgcata ggagaaaagg
     7141 tggggattta ttgttctcgt gggggtttgc gttcaaagtc tatcgcagtg attttaagtg
     7201 agcttggctt tagggtggtg cgtttaaaag gtgggtttaa agcttataga acttttgtaa
     7261 cgcattattt cgaaaatgaa ataaattttg atttttttgc tctttgtggt aatacaggtt
     7321 gtggaaaaac agagctttta gaacaactcc cacaagctat aaatttagaa aaaatggcaa
     7381 atcatttagg ctcgtctttt ggtgatattt taggaaaaca acctacgcaa aaagcttttg
     7441 aagcagaact ttttcacaat attcaaaatt tagaaaattt tgctttcata gaaagcgaaa
     7501 gtcgcaaaat aggggatatt atcttacctt tgaaatttta tgaaaaaatg caaaaggctt
     7561 ttaaaattta ttgtttttgt tctttggaaa atcgcgttag aagaatacaa aaaatttatc
     7621 aagaaaaaat gactcctttg aaatttcaac aatgtgtgca aaaaatcagt ccttatatca
     7681 gcttaaattt acgccaagat ttgcttcaaa gttatgagag aaaagaatgg caaaagctta
     7741 ttgttatgct tttggagtat tatgataaaa cttataaaaa accagataag attgatcttg
     7801 agttaaatac tgatgatatt ttaaaagcta aagaagagct tttaggctat tttaaaacgc
     7861 aattactttt ttaatatcag ataattttat taaataatca aattttttct tcattatctt
     7921 gtaataatcc tttttatctt tgttgttttt taacttggct caaattttta ttttaatgct
     7981 agtaattttg aattatagag aagtaaaata tt
//
LOCUS       DAPOLW010000071         7898 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.071, whole genome shotgun sequence.
ACCESSION   DAPOLW010000071 DAPOLW010000000
VERSION     DAPOLW010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7898)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7898)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7898
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.071"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            123..602
                     /gene="aroQ"
                     /locus_tag="ROE18_001119"
     CDS             123..602
                     /gene="aroQ"
                     /locus_tag="ROE18_001119"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HDX3651299.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGTIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            605..1078
                     /gene="folK"
                     /locus_tag="ROE18_001120"
     CDS             605..1078
                     /gene="folK"
                     /locus_tag="ROE18_001120"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HDX3651300.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FDMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            1088..2542
                     /gene="flhF"
                     /locus_tag="ROE18_001121"
     CDS             1088..2542
                     /gene="flhF"
                     /locus_tag="ROE18_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HDX3651301.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDEDVVLD
                     FSNTRLNTNLNTVKNNDLAKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNYNKKIENFEKQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPP
                     EFASIYKQAKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVE
                     SDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQY
                     AKMMKLPIIDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAE
                     IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSF
                     FSIGQEVPDDLEVANSDFLVHCILEGFNKGKNNE"
     gene            2535..3401
                     /gene="flhG"
                     /locus_tag="ROE18_001122"
     CDS             2535..3401
                     /gene="flhG"
                     /locus_tag="ROE18_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HDX3651302.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDEIKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
     gene            3420..3776
                     /locus_tag="ROE18_001123"
     CDS             3420..3776
                     /locus_tag="ROE18_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651303.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIDEAFDILIFTCFITFMFY
                     VFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNEFKERRRNAKRAA"
     gene            3757..4449
                     /locus_tag="ROE18_001124"
     CDS             3757..4449
                     /locus_tag="ROE18_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HDX3651304.1"
                     /translation="MLKEPPKAYAQMLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNDNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLEHECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            4449..5528
                     /gene="fliM"
                     /locus_tag="ROE18_001125"
     CDS             4449..5528
                     /gene="fliM"
                     /locus_tag="ROE18_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HDX3651305.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            5525..6367
                     /gene="fliY"
                     /locus_tag="ROE18_001126"
     CDS             5525..6367
                     /gene="fliY"
                     /locus_tag="ROE18_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HDX3651306.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNTSDTLKAP
                     LVYAIFNIANGGKIGILAGAILMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVAESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            complement(6416..7015)
                     /locus_tag="ROE18_001127"
     CDS             complement(6416..7015)
                     /locus_tag="ROE18_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HDX3651307.1"
                     /translation="MEKILKILLFLPILALSTKAEWVVKSYQEIKNERVIRQTYEQSC
                     GASSLATLLNILDDQKKFDELELLKIMSGQELYTDMVSFADLNDAVKKLGFQSNSYQI
                     NRENLDKLVNIPMLVKIEDDPRFPHFVIIINHKGNYLQVLDPSHGEYISSKSQFFSIW
                     DRYNKGGYALIVAPKKELKPFKLNTPKSLHFDFSPFSLF"
     gene            complement(7000..7854)
                     /locus_tag="ROE18_001128"
     CDS             complement(7000..7854)
                     /locus_tag="ROE18_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651308.1"
                     /translation="MKKIFLTFMVLVNCVFASDELNIDSLFKKQIGLRSITSFSLLST
                     GNANSYSLYPNITIGGDPTIWNDTKQVFLTQTFIYTLTPKFDILISGGGSYARQEYTN
                     FFTNAYSHKDRIGFDNLWLGFIYTGDSIADLIPQITFQTAVVQREKAINQTKNFYLKS
                     QSLQASLRGYSDPVVYSIYTGFGYNQSRKFKTLKIEYGNSIYVGGDLSIILSPKITLD
                     LGAEQRFQMKQKINGYQNSEVRSIPTLSLGSTYSINSDTAVSVNASFGGSSASPDSIF
                     GISLWKKF"
BASE COUNT         2978 a         1130 c         1339 g         2451 t
ORIGIN      
        1 aaaaaaagat atcttgcagc aactataaac acgattttcc tttcaaaaat tacattgtag
       61 caaaaattta tttttaaaat gttataataa aaggttaaaa ataaattttt aaggttaaat
      121 ccatgaaaat aatgattatc caaggcccaa atgttaatat gcttggcgta agagaagtgg
      181 gaatttatgg tgctatgaaa atggaagaaa ttcatgagca aatgaaactt gcagcatcgc
      241 aaaacaatgt agaacttgac tttttccaaa gtaattttga aggtgaaatc gtagataaaa
      301 ttcaagaatg ccttggaaca gttgatggaa ttattatcaa tgcagcaggc tatactcata
      361 cttcagtagc tattcgcgat gctattgcag cagtagcttt gcctacaatt gaagtacata
      421 ttagcaatgt ttatcgcaga gaagaatttc gtcaaaaaag tcttatagcg cctgtatgtt
      481 ctggaactat tgttggtttt ggtccttttg gctatcactt ggctttaatg ggtataattc
      541 aaatttgcga acaaataaaa aatttgcgcg caatgcaaca agcacaacaa acgaataaat
      601 aataatgcta aaaattcaag gagtaaaaca ctttgaaaaa agtcgttttt ttcctttttt
      661 tagtcaaaat atacgatctt ttaaatattt agctcttata ggcttaggaa gcaatataga
      721 acccgaaaaa aaaagatttg atatgctttt tcgagtaatg atggatgata aaagatttaa
      781 aattttatcc acatctccta tgttgataaa tgaagccttt ggttttaaag agcaaaaaga
      841 ttttaccaat gctgttatgt tgatacaaac taatttgcat gcacgagcac ttttgaaagt
      901 tttactttac tatgaagtaa aatttaaacg caagagaact ttcaaaaacg ctcctagaac
      961 gcttgattta gatcttttat acttttcaca aaaagtcaag cgtgataagt ggtgtgaggt
     1021 gcctcataaa ggggctaaag aaagagtgag tgtaattttg cctttaggca tgatataagg
     1081 aatataaatg ggacaactta tacatacttt taccgttgaa gatacagaac aaattatacc
     1141 caaagtaaaa gaagattacg gagataaagc tttaattata acaaataaac aaattcgtcc
     1201 taaaacctta aatcgcagtg cgctttatga ggttatggta gccatagaag aaagcgacta
     1261 tgaagaacac ttaaaaaaac aaggaaaatc tttacctgca aaaaaaagct cgccaaaacc
     1321 atcctctacc tctcttgcag aagaaaaaat tagatctcaa atccctcaag aagatgaaga
     1381 tgtagtcttg gatttctcaa acactcgctt aaatacaaat ttaaacactg taaaaaacaa
     1441 tgacttagct aaaaaaacct atcaagattt tccacaaaac aaaatcaacc ctcatcaaaa
     1501 taagactcta ggctttgatg atttcaaaga aaaactaagt gaagttagca atgaaatttc
     1561 taaagtcaca aacacacctt tagaaaatta cacccctaat ccaaattata ataaaaaaat
     1621 agaaaatttt gaaaagcaat ttgaaaaaca aatcaacaag cttaatgata aaatagatct
     1681 tcttgcagat atgatgtggg acgataaagc tgaagctaga aaaaatctta tgatacctcc
     1741 tgaatttgca agtatttata aacaagccaa agaaagtgga atgcttgaaa atcatctaga
     1801 agcgattatg aaagcaacta tagaaaatat gccagctgct atgaaaacca acaaagatgc
     1861 ggttcaaaga tattttcact cacttttaag aaatatcttg ccttgtcgtg ttgaaagcga
     1921 tataaaaaaa caaaaaatca tgatgctagt aggcccaaca ggagtcggaa aaacaacaac
     1981 cttagctaag ttagcttttc gctatgctta tggagataag cgttataaaa caggtattat
     2041 tacgcttgat acttatagaa tcggtgcagt tgagcaactt tttcagtatg caaaaatgat
     2101 gaaacttcct attattgata gcatagaacc aaaggattta gatgaagcga taaaaagctt
     2161 aaataattgc gaagtaattt tagttgatac tataggaaat tcacaatacg atcaaagcaa
     2221 acttgctaaa actaaagaat ttttaatgca ctcaaatgca gaaattgatg taaatttagt
     2281 ggtttctgca aacaccaaac atgaagattt aatggaaatt tataaaaatt tttcattctt
     2341 aaatattgat actttgatta ttactaaatt tgatgaaaca aaggtttttg gaaatatctt
     2401 ctctcttgtt tatgaaacaa atattcctct aagctttttc tctataggac aagaagtgcc
     2461 agatgattta gaagtagcca atagtgattt tctagttcat tgtattttag aagggtttaa
     2521 caaaggaaaa aataatgaat aaccaagcaa ataaacttcg caatctcatg agtcaaaatg
     2581 gaaccaaaaa atcccaaaac actcatttta tagctattac aagtggaaaa ggtggcgttg
     2641 gaaaaagtac gattagcgcg aatctagcca atgttttagc aaataatggc tataaagttg
     2701 ggctttttga tgctgatatt ggcttggcaa atttggatgt cattttaaat gtacgcatac
     2761 aaaaaaatct cttgcatgtt ttacgcggag aatgctcctt ggaagacatt ttaatagaag
     2821 ttaagccaaa tttatggctc atcccaggcg aaagtggaga tgagatttta aaatataatg
     2881 ataaaaatat ttacgagaga tttttaaatc aagcaagtat tttagatgaa cttgattttc
     2941 ttattatcga cacaggcgcg ggtattggtg gaaatatttt aaatttttta gaaatggctg
     3001 atgaagttat agtagtaact gttcctgatc ctgcagcaat cactgatgcg tatgcaacca
     3061 taaaaacaac ttctaagaca aaagaaaatt tactaatgct ctttaatgtt gtaaaaaatg
     3121 aaaatgaagc tttaaaagtt tttgaaaata ttaaaaaagt tgcagatgca aacattaaaa
     3181 atcctttaaa tttagaattc ttaggtcatt taagcgcttc taaagatgta agtggtagta
     3241 ttaaaaaaag aactttattt agcgatgaaa acacagcctc aagtgatgag attaaagccc
     3301 tagcttccaa gcttttatat agattggaac ggaaagtgct tgataatgtt tcaaatcgta
     3361 gtttttcaag tttttttaga aaaattattg aaagatttta gcaataaaga gaagagatta
     3421 tgaggccaga aaattacgta gcatttttca ctgtttgtgg attttttata ggacttgcat
     3481 ttagcattat tagtatagat gaagcctttg atatactgat ttttacttgt tttattactt
     3541 ttatgtttta tgtttttgtt catattgcta ttatgaattt tatagatgta aagaaaatta
     3601 gtggcagaat ctttaataaa cacgattatg aaaaaactag caataatatt atcaacgatt
     3661 tagttattcg tgaaaagaaa atggatataa ttttagaaaa gctcaatgaa gaaagagaag
     3721 agctaaagaa aaatgaattc aaagaaagac gaagaaatgc taaaagagcc gcctaaagct
     3781 tatgcacaaa tgctaaagaa agagcaagat gagcttgtgc tttcttacat gccagctctg
     3841 cgtgctatgg cttttagact aaaagaacgc ttgccttcaa gtatagatgt taatgatctt
     3901 attagcatag gcgttgaaga aatgataaag ctttcacgcc gttacgataa agaacaaaat
     3961 gataacttct ggggttttgc aagaaaaaga gttaacggct ctatgcttga ttatcttaga
     4021 agtcttgatg taatgagtcg aaataatcgt aaaattatta aagatattga tgcaatcatg
     4081 gatgaatatt ttttagaaca tgaatgcgaa cctgatgatg agtatctagc caaaaaactt
     4141 gatttagatg tagaaaaaat caaagaagta agaacagctc atgctattag ctataccctg
     4201 cccattgatg agcaaatcga actttataat gaagacaata ctttagaaaa aattgaaaaa
     4261 gaagaacttt tagaaaaaat tcacgaagtg ctagatgatc ttaaagagcg cgatcagtta
     4321 attattcagc tttattatta tgaagaatta agcctaaaag aaatcagtga aattttacaa
     4381 atcagtgaaa gcagaatttc acaaattcac aaaaaacttc ttaaaaaact tagagaaagg
     4441 ctagtgtaat ggctgagata ctctcccaag aagaaattga tgctctactt gaagttgtcg
     4501 atgataacac cgacacaccc atagcctcaa attcaaaaga tgaaaaagat gaaagaaata
     4561 tcgttgtata tgattttaag cgtccaaaca gagtttcaaa agaacaactt aggacgatta
     4621 aaggcataca tgataaatta gcaagaaatt tagcctctca aatttcatcg atgatgagaa
     4681 gtattgttga aactaaactt cattcagtcg atcagatgac ttatggagag tttttaatgt
     4741 ctttgccaag cccaacaagt tttaacgttt tttctatcaa acctttagat ggaaactgtg
     4801 ttttagaaat caatccaagc atagcttttc ctatgataga tagacttttg ggcggacaag
     4861 gtgatagcta tgaagcttcg cgtgagctta cggatattga gcttaatttg cttgattcta
     4921 ttttgcgtat cattatgcaa agacttaaag aaagctgggc taccgtaact gaaatttatc
     4981 ctagtataga agctaaagaa tcaagtccaa atgttgtaca aatcgtatct caaaatgaga
     5041 ttgttatcat ggtagtaatg gaaatcatca taggaaattc aagcggaatg gtaaatatct
     5101 gctatcctgt agtacattta gaaagtatat taagccgttt agcaaaccgt gatattatga
     5161 tgggtgaaac ctcagccaaa aaatcacgca acaaagaact taaaacttta atcggtcgtg
     5221 ctgaagtggt atatgaggca attttaggaa aaaccttaat taatgttcat gaatttttag
     5281 aacttaaaca aggcgatatc ttaagacttg atagagaagc agatgataaa gctatagtaa
     5341 gcatcgataa aaaagatgtt ttcttagcac aaattggatt gcatcgtttt agaaaatcta
     5401 ttaaaatttt agaacttata cgcacagata aagatgaaat caaagaaatt ttggaaaaat
     5461 acgaagaaga gcgtaaagct aaagctagtg tttatgatga gcctgaagag gaggatgaag
     5521 aaatatgatc aatgattttt taaaaatgtt tacaaatgaa tgcatcagca ccattgaagg
     5581 tttaacagga aaaagtgctg aatttagcga atataaagaa tttgatgtca atacaagcga
     5641 tactttaaaa gcacctttag tgtatgctat atttaatata gcaaatggtg gaaaaatagg
     5701 aattttagct ggtgctattt taatgagtgc tattggtgaa tggatgatgg gtgaagaaga
     5761 gatcaccaaa aacgataaac taggtcctga tgaaatggat gcagctaaag aagccatcca
     5821 aaatatcatt tcagcatttt ctacaacctt aggagcccaa aaagacattc caaaaatgga
     5881 ttttagcata gaatcttgtg aatttgtggc tgaaagcgta gattttaaag attttaaaaa
     5941 attattttta tatgatgtaa aaataggcga tttagaagaa caagtttctt tagccatgga
     6001 tcaaacactc cataacatcc taagcgggaa acctgctgaa acaggaaata caagcactga
     6061 ttctaatcac aatactgaag aaaaagcgat aatgcttagc gaagagctta aaaatatcaa
     6121 tcttatcatg gatgtgcgtt tgcctgttcg tgtgcgtata ggcaataaaa aaatgctttt
     6181 aaaagatgtt ttaactatgg atataggttc agttgtggag cttaatcaac ttgcaaacga
     6241 tccgcttgaa attttaattg gggataaaag aattgcttat ggcgaggtag taattgtcga
     6301 tggtaacttc ggcgttcaaa ttacagaaat tggttctaaa aaagaaagat tagaacaact
     6361 aagataaaaa gttttagcct acaaattaag aataataaat ataaacgaat taaaactaaa
     6421 acaaactaaa agggctgaaa tcaaaatgta aagattttgg agtgtttaac ttaaaaggtt
     6481 ttagctcttt tttaggagca acaattaaag cataaccacc tttattatat ctatcccaaa
     6541 tactaaaaaa ttgactttta gaacttatat attctccatg gcttggatca agcacttgta
     6601 aataattacc tttatgattg ataattataa caaaatgtgg aaagcgtgga tcatcttcaa
     6661 tttttacaag cattggaata tttacaagtt tatccaagtt ttctctattg atttgatatg
     6721 aattgctttg aaagcccagt tttttaactg catcgtttaa atctgcaaag cttaccatat
     6781 ccgtataaag ttcttgtccg ctcataatct ttaaaagttc aagttcatca aacttttttt
     6841 gatcatcaag tatattaagt aaagttgcta aagatgaagc accacaagat tgctcataag
     6901 tttgtcttat tactctttcg tttttaattt cttgataaga cttaactacc cattcggctt
     6961 ttgtactcaa agcaagaatg ggtaaaaata ataaaatttt tagaattttt tccataagct
     7021 tatcccaaat atgctatcag gagaagcaga gcttcctcca aaactagcat taacagaaac
     7081 tgcggtatct gaattaatgc tataagtaga acctaaactt aaagttggaa tagaacgcac
     7141 ttcagaattt tgatagccat tgattttttg tttcatttga aatctttgct ctgctcctaa
     7201 atctaaagta attttaggac ttagaataat agataaatcc ccacccacat aaatactatt
     7261 tccatactct attttaaggg ttttaaattt tcttgattga ttataaccaa accctgtata
     7321 aatactataa actacaggat cgctatatcc ccttaaacta gcttgtaagc tttgtgattt
     7381 tagataaaag tttttggttt gattgattgc tttttctctt tgaacaactg cagtttgaaa
     7441 ggtaatttgt ggaattaaat ctgcaatact atcgcctgta taaataaaac ctagccatag
     7501 attatcaaat cctatgcgat ctttatggga atatgcattt gtgaaaaaat ttgtatattc
     7561 ttgtcttgca taacttccgc cccctgaaat aagtatgtca aacttaggtg ttagggtata
     7621 aatgaaagtt tgagttaaaa acacctgctt tgtatcattc caaattgtag gatctccgcc
     7681 tattgttata ttaggataaa gagaatacga gtttgcattt cctgtgctaa gtaaagaaaa
     7741 gcttgtaatg cttcttaagc ctatttgctt tttaaataaa ctgtctatat ttagctcatc
     7801 actagcaaaa acacaattaa ctaaaaccat aaatgttaag aaaatttttt tcattagtca
     7861 atccttacat tttaaataat cagctcaagt taatttta
//
LOCUS       DAPOLW010000072         7847 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.072, whole genome shotgun sequence.
ACCESSION   DAPOLW010000072 DAPOLW010000000
VERSION     DAPOLW010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7847
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.072"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..179
                     /locus_tag="ROE18_001129"
     CDS             <1..179
                     /locus_tag="ROE18_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651309.1"
                     /translation="KFTQNDYEVSERLDRKKLEKILKTIEFYHLKNGISSDFQIDLIC
                     IKNDVIQFCENISF"
     gene            236..550
                     /gene="trxA"
                     /locus_tag="ROE18_001130"
     CDS             236..550
                     /gene="trxA"
                     /locus_tag="ROE18_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HDX3651310.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELAN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
     gene            684..1622
                     /gene="trxB"
                     /locus_tag="ROE18_001131"
     CDS             684..1622
                     /gene="trxB"
                     /locus_tag="ROE18_001131"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HDX3651311.1"
                     /translation="MLDVAIIGGGPAGLSAGLYATRGGLKNVVMLEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMAPWNEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTE
                     LAKAVIVCTGSAPKRAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKVYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVTGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDGKFLCNMEEGGQVSVDLKMQTSVAGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            complement(1660..3441)
                     /locus_tag="ROE18_001132"
     CDS             complement(1660..3441)
                     /locus_tag="ROE18_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HDX3651312.1"
                     /translation="MERRLFLKGSALGSMVAFFASSNLSAAMLKDKDLLGFKAVSAST
                     QDKVIVPQGYEAKVLISWGDPLFSKAKPYDESKIIDMNAVKNAHLVFGDNDDGMSFFP
                     LSKNRGILAVNNEYINPEIMFNHHGKNLSKEDVLYEQASVGVSILEIEKKGDDWTVVL
                     DSKYNRRIDANTKMQVSGAAKKEVLKNEKFVHGTFANCANGQTPWGTYITCEENFENF
                     FGSSDENLEFNDAFKRYGFNKTSLYGWEKFDERFDLAKNMDEANRFGWIVEINPFDAK
                     STPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFVSKHKYKKGTDTSKI
                     LDEGTLYVGQFNGNVGDFKGQGKWIALEYGKNGLDEKNGFKSQAQVLINTRLAASIVG
                     ATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANPRTKNVYGQILKWMPKNSHK
                     DDDFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KDEYEGMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTTMFVGIQHPGEGLK
                     GSTFPYGKTPRSSVMMIRKLDGGVIGS"
     gene            complement(3576..5564)
                     /locus_tag="ROE18_001133"
     CDS             complement(3576..5564)
                     /locus_tag="ROE18_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HDX3651313.1"
                     /translation="MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKT
                     SLYESTLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVG
                     PILKYYRHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTND
                     IFVTPAYLDTVLKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVAKTPGNTFLFDQ
                     KNKIFAATNKELLNPSIDHSPVLNAYKLNGDNNFFSYKLNNEERLGACTKVFAYTACI
                     TESADIINKPIYKAAFIQAIVVIIVVVFSVILLYFIVSKYLSPLAAIQTGLTSFFDFI
                     NYKTKNVSTIEVKSNDEFGQISNAINENILATKRGLEQDNQAVKESVQTVSVVEGGNL
                     TARITANPRNPQLIELKNVLNKLLDVLQARVGSDMNAIHKIFEEYKSLDFRNKLENAS
                     GSVELTTNALGDEIVKMLKQSSDFANALANESGKLQTAVQSLTTSSNSQAQSLEETAA
                     ALEEITSSMQNVSVKTSDVITQSEEIKNVTGIIGDIADQINLLALNAAIEAARAGEHG
                     RGFAVVADEVRKLAERTQKSLSEIEANTNLLVQSINDMAESIKEQTAGITQINDSVAQ
                     IDQTTKDNVEIANESAIISSTVSDIANNILEDVKKKRF"
     gene            5644..6075
                     /locus_tag="ROE18_001134"
     CDS             5644..6075
                     /locus_tag="ROE18_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HDX3651314.1"
                     /translation="MAYTIKKVEKETKISAHTLRFWAKKGLFPFVQKDENSVKYFSKS
                     DIEWVKWIEWLRISGMPIEQVKHYIKLCSLGIKTAKERQEMLKQTKKKLQNQIKTLKE
                     SEKVLSKKIKIYEEMLANEVDGFNPESKDYQPCDKLHKFKG"
     gene            complement(6083..6404)
                     /locus_tag="ROE18_001135"
                     /pseudo
     CDS             complement(6083..6404)
                     /locus_tag="ROE18_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906233.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            complement(6414..7361)
                     /gene="arsP"
                     /locus_tag="ROE18_001136"
     CDS             complement(6414..7361)
                     /gene="arsP"
                     /locus_tag="ROE18_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_129557825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organoarsenical efflux permease ArsP"
                     /protein_id="HDX3651315.1"
                     /translation="MQSFLNTFKEFLYLFTELSVLFIAISFLVSIINQKYEGIFLKQL
                     AGDKISSYFKAIFLGALTPFCSCSTIPLLRAFLEAKVKLSIALAYLFTSPLINPIIFS
                     MLFVTFGLKLSLIYVVFLIFLIFIISFVFSKFKEDSFLKHIPKNTKSSIFTQSAHNPS
                     NFIFKQKSCCANTQDKSKNITINYKELFKESLKNYKKLLPYIVVAVFIGAFIHGFIPQ
                     EILQKYLNGNEILSIALAAFLGIFLYLRVETIIPIGLALLQMGISQGVIMSFLIAGAG
                     CSLPELVLLKQMFKMKFLFLFVMIILGVAISFGIFINLI"
     gene            complement(7446..7778)
                     /locus_tag="ROE18_001137"
     CDS             complement(7446..7778)
                     /locus_tag="ROE18_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDX3651316.1"
                     /translation="MKKYHSLCPIETTLNLIGNKWKILIIRDLLQGTKRFGELRKSIS
                     FTKNQNISQNVLTQNLRELEEAKLIKRKVYAEVPPKVEYSLTSLGNSLESILKSLENW
                     GNSYKNIV"
BASE COUNT         2743 a         1161 c         1160 g         2783 t
ORIGIN      
        1 ttaaatttac tcaaaatgat tatgaagttt ccgagcgttt ggatagaaaa aaacttgaaa
       61 aaattttaaa aactatagaa ttttatcatc ttaaaaatgg gatttcatcg gattttcaga
      121 ttgatctgat ttgcattaaa aatgatgtga tacaattttg cgaaaatata agtttttaag
      181 ctgatattta aaaaaataaa atacaattag acaaaaatta aagaaaggaa aaattatggg
      241 aaaatatatt gaattaacaa gtgataattt tgctcaagca aaagaaggtg tagctttagt
      301 tgatttttgg gctccatggt gcggaccttg tagaatgctt gctccagtta ttgatgaact
      361 tgcaaatgac ttcgatggta aagctaaaat ttgcaaagta aatacagatg aacaaggtga
      421 tttagcagct gaatttggtg ttcgctctat tcctacgctt attttcttta aaaatggtga
      481 agttgtagat caactcgttg gtgcacaatc taaacaagca attagcgata aactaaactc
      541 tttactataa actaaaggct agtatgacta gccttcttct taaaaatttc aaatttatac
      601 taaataataa tttttattaa ctactattaa gaataatttt tatatcatta ttaataataa
      661 aattcaatat aaaggaaata taaatgttag atgtagcaat cataggtgga ggtcctgctg
      721 gacttagtgc tggactttat gcaactagag gtggtcttaa gaatgtagta atgcttgaaa
      781 aaggtatgcc tggcggacaa attacctcaa gttctgaaat agaaaattat ccaggtgtag
      841 cccaagttat ggatggaatt tcttttatgg ctccttggaa tgaacaatgt atgcgttttg
      901 gtttaaaaca tgaaatggtt ggagtagagc aaattttaaa aaatagcgat ggaagtttta
      961 ccatcaaatt agaaggtggc aaaacagaac ttgctaaagc tgtgatagtt tgtacaggct
     1021 cggctccaaa aagagcaggt tttaaaggcg aagatgaatt ttttggaaaa ggtgtaagta
     1081 cttgtgcaac ttgtgatgga tttttttata aaaataaaga agttgcagtt ttaggtggtg
     1141 gagatacggc tttagaagaa gctttatatc tagcaaatat ttgttctaag gtttatctta
     1201 tccaccgcag agatgagttt agagcggctc catctacagt agaaaaagtt aagaaaaatg
     1261 aaaaaataga acttattact agtgcaagtg tagatgaagt atatggtgat aaaatgggtg
     1321 ttactggggt aaaagtaaaa ttaaaagatg gtagtattag agatttaaat gttccaggaa
     1381 tttttacttt tgttggtctt aatgtaagaa atgaaatttt aaaacaagac gatggtaagt
     1441 ttttatgcaa tatggaagaa ggtgggcaag taagtgttga tcttaaaatg caaactagcg
     1501 ttgctggact ttttgccgca ggggacctta gaaaagatgc gcctaagcaa gttatttgtg
     1561 ctgcaggtga tggagctgta gctgcattaa gtgctatggc ttatatagaa agcttgcatt
     1621 aagattttat aaagttgcta aaagcaactt tatttttatt tagcttccta tcactccacc
     1681 atcaagtttt cttatcatca ttacacttga tcttggtgtt tttccataag gaaaagtact
     1741 acctttcaaa ccttctcctg gatgttgtat gcctacaaac attgtagtat aatcctcact
     1801 aaaagcaatc cctgttaatt cacaagcaat aggtcctgtt aaaaagcgtc tgatttcccc
     1861 tgtttttgga tttgctgcta gcatgcagtt atttcccata ccttcgtatt catctttatt
     1921 agaataagat ccatctgttt gtatccaaag tcttccatct ctatcaaatt taagtccatc
     1981 aggagaattg aatttatttt cacttgtaat attatttgag cctttatata agccttgttg
     2041 gttatcagga tttccagcaa gagcaaaaat ttcccaagta aaatcatcgt ctttatgaga
     2101 attttttggc atccatttta aaatttgtcc ataaacattt ttagtccttg gatttgctgc
     2161 attaggttct tggcgatttt tgttgttcgt tagtgttgca aatacctctt tagaaccact
     2221 ttgtttatgg cttgctatcc attcacatct atccatagga gttgcaccta caatgcttgc
     2281 ggcaagacgc gtattgatga gtacttgagc ttgagactta aaaccatttt tttcatctag
     2341 gccgtttttg ccatattcta aggctatcca ttttccctgt cctttaaaat ctcccacatt
     2401 gccgttaaac tgtcctacat acaaagtgcc ttcatctaaa attttacttg tatcagtacc
     2461 ttttttgtat ttgtgtttgc taacaaattt ataaataaat tcattcatct catcatcacc
     2521 catataaact ataacagaac catctttttc tacgataatt tctgcatttt catgtttaaa
     2581 acgccctaaa gaagttcttt taacaggtgt actttttgca tcaaaaggat tgatttccac
     2641 tatccaacca aaacgattgg cttcatccat atttttagct aaatcaaatc tttcatcaaa
     2701 tttttcccat ccataaagac tagttttgtt aaatccatag cgcttaaagg catcattaaa
     2761 ttctagattt tcatctgaac ttccaaaaaa attttcaaaa ttttcttcac aggtgatata
     2821 agttccccaa ggtgtttgtc catttgcaca atttgcaaaa gttccatgaa caaatttttc
     2881 attttttaaa acttcttttt tagctgctcc acttacttgc attttagtgt ttgcatcgat
     2941 tctgcggtta tacttagagt ctaaaaccac agtccaatca tcaccctttt tttcgatttc
     3001 taagatactc acacccacac tggcttgttc atataaaaca tcttctttgc ttaaattttt
     3061 accatgatga ttaaacatga tttcaggatt tatatattca ttattaacgg ctaaaattcc
     3121 tctgtttttt gaaagtggaa aaaaactcat accatcatcg ttatctccaa aaaccaaatg
     3181 agcattttta accgcattca tatcgatgat tttactttca tcataaggtt ttgctttact
     3241 aaaaagtgga tcaccccaag aaattaaaac ctttgcttca taaccttgtg gtactataac
     3301 tttatcttgc gtgcttgcac taacagcttt aaaacctagc aaatccttat ccttaagcat
     3361 agcagcactt aaatttgaac ttgcaaaaaa agccaccata gaacctaaag ctgaaccttt
     3421 taaaaacaat cttctttcca tttgttttta ctccatatta aaatttaaaa caatggaagt
     3481 ataaaaatat ttggaaactt tttagaaact ttgatgaaaa atttaaattg aaggaaaaat
     3541 ttatacctag tttttcacta ggtataaatg actaattaaa acctcttctt cttaacatct
     3601 tctaagatat tattagctat atcacttact gtactagaaa taatagctga ttcattagca
     3661 atttcaacat tatctttagt agtttgatca atttgagcta cgctatcatt gatttgagtg
     3721 atacctgcag tttgttcttt aatactttct gccatatcat tgatagattg aacaagtaaa
     3781 ttagtattag cttcaatttc tgataaagac ttttgagttc tttcagctaa ctttctaact
     3841 tcatcagcta ccactgcaaa gcctctacca tgttctccag cacgagctgc ttcaatagct
     3901 gcatttaaag ctaaaagatt gatttgatct gcaatatcac ctataatacc tgtaacattt
     3961 ttaatctctt cagattgagt gataacatca ctagttttaa ctgaaacatt ttgcatagaa
     4021 gaagtgatct cttctaaagc tgctgcagtt tcttctaaag attgagcttg agaatttgaa
     4081 gaagtggtta agctttgaac agcagtttgt aattttccac tttcattagc taaagcatta
     4141 gcaaagtctg aactttgttt tagcatttta actatttcat cacctaaagc attagtagtt
     4201 aattctacac taccgctagc attttctaat ttatttctaa agtctaagct tttgtattct
     4261 tcaaaaattt tatgaatagc attcatatca gaacctactc tagcttgtaa aacatcaaga
     4321 agtttattta gaacattttt taattctatt aattgtgggt ttcttggatt agcagtaatt
     4381 cttgctgtta aattaccacc ttctacaact gatacggttt gaactgattc tttaacggct
     4441 tgattgtctt gttctaaacc tcttttagta gcaagaatgt tttcattgat agcatttgag
     4501 atttgtccaa attcatcatt actttttact tctatagtag aaacattttt tgttttatag
     4561 ttgataaaat caaagaatga agttaaacct gtttggatag ctgcaagtgg ggagaggtat
     4621 tttgatacga tgaaataaag gaggatgacg ctaaatacta ctacaataat gacaacaatg
     4681 gcttgaataa atgcagcttt ataaataggt ttatttataa tatcagcgct ttcggtaata
     4741 caagctgtat aagcaaagac tttagtacaa gctccaagtc tttcttcatt atttaactta
     4801 taagagaaga agttgttatc accattgagt ttatatgcat ttagaacagg agaatgatca
     4861 atggatggat ttaataattc tttattggtt gctgcaaata ttttattttt ttgatcaaat
     4921 aaaaaagtat ttccaggggt ttttgcaact aaattttgca aatcttctga tggtatatcg
     4981 acacccagta cccctatgat tttaccatct ttataaatag ctttagaata cgttattaca
     5041 tattgtttta aaactgtatc taaatatgct ggtgtaacaa aaatatcatt tgtttttaaa
     5101 gcttcttgat accaatcttt tgtctttata tctaaatcat cacgtaattc aggcattttt
     5161 gcatcattag atttttgact aagtaaaact tttccattgt ttaaacctaa ataaacattt
     5221 agtgcattta tactatgacg ataatatttc aatattggac caacattgtt aataatattt
     5281 tcttcagtga ttaaagattg ataaggtaag ttcgcgatat ctttttctaa agctctagta
     5341 aaagattgat ttgtggaacg gaaatcttca acggtagatt gtgtgacttt aagtaggtca
     5401 gtttgatttt taagagtgct ttcatatagt gaggtttttg taaaataaaa acttacaata
     5461 cctagaacaa ttaaggcaaa aattgcaatt aaatttgcaa tgagggaaag tttgatttta
     5521 atactattca ttattttcct tttaatcttt gttattttta gcataaaact aataatttgg
     5581 ctattatttt atcacaaaaa aataaaataa atttttattt ttatcttaaa taaaggagaa
     5641 aatatggctt atactataaa aaaagtagaa aaagaaacaa aaattagtgc tcatacttta
     5701 agattttggg ctaaaaaagg tttgtttcct tttgttcaaa aagatgaaaa tagtgtgaaa
     5761 tatttttcaa aaagcgatat agaatgggta aaatggatag aatggcttag aatttcaggt
     5821 atgccaatag aacaagtcaa acattatata aaactttgct ctttgggtat aaaaactgct
     5881 aaagaaagac aagagatgtt aaagcaaaca aagaaaaaat tacaaaacca gattaaaaca
     5941 ttaaaagaaa gtgaaaaagt tttaagcaaa aagataaaaa tttatgaaga aatgcttgca
     6001 aatgaagtcg atgggtttaa tccagaaagc aaggactatc aaccttgtga taaattgcat
     6061 aagtttaagg gttgatttta tattaagggc aaatttgggt aataatattt tcattttttt
     6121 aatagcattt ttaagctcta aatttttgat attttcaaaa agatctaaat gcagctttaa
     6181 aagctcatta ttaatcccat aatacgccca agttccttga cgccttacat acaaaaaccc
     6241 gcatctttta aaatttttaa atgtcttgaa agtcttgatt gacccatgtt taagagctct
     6301 tgtagatcac aaacacaaag ttctttgtat cttaaaagat gatgtaaaat caaaacccta
     6361 ctttcatcat tgatcgccga aataatggct aaaaattttt gcattttatt tccttaaatt
     6421 aaattaataa aaattccaaa agatatagcc acgcctaaaa taatcataac aaataaaaat
     6481 aaaaatttca ttttaaacat ttgtttgagt aaaacaagct caggtaaaga acatccagca
     6541 ccagcgatta aaaaactcat aatcactcct tgagaaattc ccatttgtaa aagtgctaag
     6601 cctataggaa taatagtttc tactcttaaa taaaggaaaa ttcctaaaaa agccgctaat
     6661 gcaatgctta aaatttcatt gccatttagg tatttttgta aaatttcttg aggaataaaa
     6721 ccatgaataa aagcaccgat aaaaactgcc acaacgatat aaggtaataa ttttttataa
     6781 tttttcaaac tttctttgaa taattcttta tagtttatcg ttatattttt agacttatct
     6841 tgagtatttg cacagcatga tttttgttta aaaataaaat tgctaggatt gtgagcgctt
     6901 tgggtaaaaa tacttgattt tgtattttta ggaatatgtt ttaaaaaact atcttcctta
     6961 aatttagaaa aaacaaaaga aataataaat atcaaaaata tcaaaaaaac cacataaatc
     7021 aaacttaact ttaaaccaaa agttacaaaa agcatggaaa aaataatagg attaataaga
     7081 ggcgaagtaa aaagataagc taaagctatg ctaagtttta ctttcgcttc taaaaaagct
     7141 cttaaaagcg gtatggtaga acaggaacaa aatggcgtta aagcacctaa aaatatagct
     7201 ttaaaataac ttgaaatttt gtcaccagca agttgtttta aaaaaattcc ttcgtatttt
     7261 tgattgataa tagaaactaa aaaagaaata gctataaaaa gtacagaaag ctcagtaaat
     7321 agatataaaa actctttgaa agtatttaaa aaagactgca ttttttatcc ttttaaaaat
     7381 atttccaaaa aatataacat gtataaatta ataaattaat atatattgat atattaattt
     7441 attacttaaa cgatattttt atagctattt ccccaattct caagactttt taagatggat
     7501 tctaaactat tgcctaaaga tgtaagtgag tactcaacct ttggaggaac ttctgcataa
     7561 actttgcgtt tgatcagttt tgcttcttct aattctcgta aattttgtgt aaggacattt
     7621 tgagagatgt tttgattttt tgtaaatgaa atgctttttc ttaactctcc aaatctttta
     7681 gtcccttgca acaaatctcg aataattaaa attttccatt tatttcctat caaattaagc
     7741 gtggtttcaa taggacaaag agaatgatat tttttcatta taaatcctta ttttttaaaa
     7801 ttataacata ttttttaaaa aaatttatct cattaaaata ctaaaat
//
LOCUS       DAPOLW010000073         7826 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.073, whole genome shotgun sequence.
ACCESSION   DAPOLW010000073 DAPOLW010000000
VERSION     DAPOLW010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7826
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.073"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..216
                     /locus_tag="ROE18_001138"
     CDS             <1..216
                     /locus_tag="ROE18_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheR"
                     /protein_id="HDX3651317.1"
                     /translation="EKFSRLGKFDIIASRNMIIYFDHESKLKLMERFHRILNDKGRLY
                     VGNADLIPETIYFKKIFSPRGVYYEKV"
     gene            352..1080
                     /locus_tag="ROE18_001139"
     CDS             352..1080
                     /locus_tag="ROE18_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDX3651318.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLLDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     IPSEFFSNPKTERARLFLGKILKN"
     gene            1102..1881
                     /gene="peb1A"
                     /locus_tag="ROE18_001140"
     CDS             1102..1881
                     /gene="peb1A"
                     /locus_tag="ROE18_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HDX3651319.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            1883..2635
                     /locus_tag="ROE18_001141"
     CDS             1883..2635
                     /locus_tag="ROE18_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDX3651320.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            2646..3305
                     /locus_tag="ROE18_001142"
     CDS             2646..3305
                     /locus_tag="ROE18_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDX3651321.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGVVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            3413..4342
                     /locus_tag="ROE18_001143"
     CDS             3413..4342
                     /locus_tag="ROE18_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HDX3651322.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAYERIASGVLDELVVTDTIPLK
                     EQLPNIKVLSVTPVFAEVIRRVYHNESVNSLFI"
     gene            4509..6620
                     /locus_tag="ROE18_001144"
                     /pseudo
     CDS             4509..6620
                     /locus_tag="ROE18_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
     gene            6601..6798
                     /gene="kcuS"
                     /locus_tag="ROE18_001145"
     CDS             6601..6798
                     /gene="kcuS"
                     /locus_tag="ROE18_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HDX3651323.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEHMKQKHPGKIPKT
                     RGEFFKECLDKKYNSGGLNKC"
     gene            complement(6838..7251)
                     /locus_tag="ROE18_001146"
     CDS             complement(6838..7251)
                     /locus_tag="ROE18_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HDX3651324.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVTYVSVTRDGKKKPISEELKRIHGFLNA"
     gene            7313..>7826
                     /locus_tag="ROE18_001147"
     CDS             7313..>7826
                     /locus_tag="ROE18_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651325.1"
                     /translation="MNNFKEIAKLVRKYKERNNALYEFLDKEDVGEYFRSLISLSELK
                     QDKTTMLAILRRLVDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSLIQGVHNIGLIMNIFEISWTKEIIEKNNKILSTQFPNLDDAME
                     FLRKNHLYQKT"
BASE COUNT         2592 a          987 c         1477 g         2770 t
ORIGIN      
        1 gaaaaatttt caagattggg aaaatttgat attatagctt ctagaaatat gattatttat
       61 tttgatcatg aatcaaaact aaaacttatg gagaggtttc atagaatttt aaatgataaa
      121 ggaaggcttt atgttggcaa tgctgattta attccagaga ctatttattt taaaaagatt
      181 ttctctccaa gaggtgttta ctatgaaaaa gtataaattc taaaaattac taaaagttac
      241 actttggaaa tttattagta aaaataagtt acattttgaa gtagttttct ttatttaatg
      301 ataaaataat ttcaattaat tttatattta gctaaaaata aaggaaaaaa cttgattgaa
      361 ttaaaaaatg taaacaaata ctacggaact catcatgttc taaagaatat taatctttct
      421 gttaaagaag gtgagaagct tgttattata ggtccaagtg gaagtggaaa aagtacaact
      481 atccgttgca tgaatgggct tgaagaagtt agttcaggag aggtcgtagt taacaatctt
      541 gttttaaatc ataaaaataa aattgaaatt tgccgaaaat attgtgcaat ggtttttcag
      601 cattttaatt tatatccaca tatgacggtt ttgcaaaatt tgaccttagc tccaatgaaa
      661 cttcaaaaaa aatctaaaaa agaagctgaa gaaacagctt ttaagtattt aaaagttgta
      721 ggtttgctgg ataaagcaaa tgtttatcca gcaacccttt caggtggaca acaacaacgc
      781 gttgctatag caagatcact ttgtactaaa aaaccctata ttttatttga tgaacctact
      841 tcagcccttg atccagaaac catacaagag gttttagatg taatgaaaga aatttcacat
      901 caaagcaata ctaccatggt ggttgttaca cacgaaatgg gttttgcaaa agaagtagca
      961 gataggatta tttttatgga agatggtgct attgtggaag aaaatattcc tagtgaattt
     1021 ttctcaaatc caaaaactga aagagcgcga ctctttttag ggaaaattct taaaaattaa
     1081 ccaaaattga aaggagaaaa aatggttttt agaaaatctt tgttaaagtt ggcagttttt
     1141 gctctaggtg cttgtgttgc atttagcaat gctaatgcag cagaaggtaa acttgagtct
     1201 attaaatcta aaggacaatt aatagttggt gttaaaaatg atgttccgca ttatgcttta
     1261 cttgatcaag caacaggtga aattaaaggt ttcgaagtag atgttgccaa attgctagct
     1321 aaaagtatat tgggtgatga taaaaaaata aaactagttg cagttaatgc taaaacaaga
     1381 ggccctttgc ttgataatgg tagtgtagat gcggtgatag caacttttac tattactcca
     1441 gagagaaaaa gaatttataa tttctcagag ccttattatc aagatgctat agggcttttg
     1501 gttttaaaag aaaaaaaata taaatcttta gctgatatga aaggtgcaaa tattggagtg
     1561 gctcaagctg caactacaaa aaaagctata ggtgaagctg ctaaaaaaat tggcattgat
     1621 gttaaattta gtgaatttcc tgattatcca agtataaaag ctgctttaga tgctaaaaga
     1681 gttgatgcgt tttctgtaga caaatcaata ttgttaggtt atgtggatga taaaagtgaa
     1741 attttgccag atagttttga accacaaagt tatggtattg taaccaaaaa agatgatcca
     1801 gcttttgcaa aatatgttga tgattttgta aaagaacata aaaatgaaat tgatgcttta
     1861 gcgaaaaaat ggggtttata atatgaatga aagtgtaggt tttgttgaac atttaagaca
     1921 aattcttact tcttggggtt tatatgatga aaatagtata agcccttttg cggtatggaa
     1981 atttttagat gctttggata ataaagatgc ttttattaat ggttttattt atactttaga
     2041 agtaagcatt cttgctttgc ttatagctac aatttttgga actataggcg gagttatggc
     2101 tacaagtaga tttaaaatta tcagagccta cactagaatt tacgtagagc tttttcaaaa
     2161 tgttcctttg gtaatacaaa ttttcttttt gttttatgcc ttgcctgttt taggtataag
     2221 gcttgatata tttactattg gtgtattggg tgttggggcg tatcacggag cttatgtaag
     2281 cgaggtggtt agaagtggaa ttttggctgt gccaagaggt cagtttgaag cttctgcgtc
     2341 tcaagggttt acttatattc aacaaatgcg ttatattata gtacctcaaa ccattagaat
     2401 tattttacca ccgatgacaa atcaaatggt aaatttaatt aaaaatacct ctgtattgct
     2461 tattgtaggt ggagctgagt taatgcattc tgctgatagt tatgcagctg attatggaaa
     2521 ttatgcgcca gcttatatat ttgcagcggt tttatatttt ataatttgct atcctttggc
     2581 ttattttgca aaagcttatg aaaataaatt aaaaaaagca catttaacga gataaagggt
     2641 tgttaatgga aaatgttttt aatgcgcaaa atattgaatt tttaatgcaa ggtttatttc
     2701 tgacattaaa aatagccttg gcaacttgta ttatttcgat tgtttttgga acttttttag
     2761 ctataactaa aaattatgga gatagattaa gtaaattttt agcagcttgc tatatagata
     2821 tttttagaaa tactccttta ttgctatgga tgctcgcagc ttgttttgtt ttgcctgtat
     2881 tttttggaca atttcctcaa gctttttggg gtactatagg attttcactt tatacgagtt
     2941 cggttatggc tgaaattatt agaggcggat taaattctat accaaaaggt cagtttgaag
     3001 cagcttattc acaaggtttt ggtaaatttt ttactctttt ttatattatt ttaccacaaa
     3061 cttttagaaa aataatacct gctttattat ctcaaattgt aaccactgta aaggatacag
     3121 cttatttagc aggtctgggt atagctgaac ttacttataa ttcaaaaact atattggcaa
     3181 aactaacaag ttttgaagaa attttagcga tgataggtgt tgttgcggga atttatttta
     3241 taatatgttt ttcactttct atgttggtaa gatattatgc caaaaagaca gcttatattt
     3301 cttaaaaaag cttatatttt tatataagct ttttaaattt acagcagttt ttaacatttt
     3361 ttttattaaa atcttttgta ttaattcata attttattga ttaaggtttt ttatgcgagg
     3421 ttataaaatt ttttcaggct cagctaatgt cgaatttgca agacaagttt ctaaatatct
     3481 ctccctgcct ttaagtgatg ctggagtaaa gcggtttagt gatggagaga ttagcgttca
     3541 aattgatgag agtgtacgcg gaaaggatgt ttttattatt caaagtactt gcgctcctac
     3601 aaacgataat ttaatggaac ttttaattct tacagatgct ttgcgtcgct caagtgcaaa
     3661 ttcaattacg gctattatcc catattttgg ctatgcgaga caagatagaa aagcaaatcc
     3721 tagagtgcca attactgcta aacttgtggc taatttgatt caagcagctg ggattgatcg
     3781 cgtagctacg atagatttgc atgcaggaca aattcagggt ttttttgata ttccagtaga
     3841 taatctttat ggaagtatag tttttaatga ttacattaaa gccaaacatt ttaaaaatgc
     3901 tattatagga agtccagata tagggggtgt tgcaagagct aggagtgttg caaagcattt
     3961 aggacttgat atagttatag ttgataagcg tcgtgaaaaa gccaatgaaa gtgaagtaat
     4021 gaatattatt ggagatgtaa aagataaaga agttatctta gtggatgata ttattgatac
     4081 tgctggcact atagttaaag ccgcggaagc tttaaaagaa aaaggtgcaa aatctgttat
     4141 ggcttgctgt actcatgcag ttttaagtgg aaaagcctat gagagaatag caagcggagt
     4201 tttagatgag cttgtggtaa cagatactat acctttaaaa gagcaattac caaatattaa
     4261 agtattaagc gttacacctg tttttgctga agtaatacgt cgtgtttatc ataacgaaag
     4321 tgtaaattct ctctttattt agattaaaaa agcttaaaga ttatttttaa gcttttcatt
     4381 tttatgctac ttaaagaaac aaaaaacata tattttttta aaaatgtgaa aaaactaaac
     4441 atctttctat acaatttaat ctataaatct gctattcttt gaaaatattt tattttctta
     4501 ggagaaatat gactcagtta agtactaaaa ttttatggtt gtttgttgca gctttaggcg
     4561 ctatttgttt tggttattta gctttataaa atggcgaaag tgtatcagcg atttatttgg
     4621 tggttgctgc tgtatgtatt tatatgatag gatatagatt ttatgggagt tttgtagctt
     4681 ataaggtttt agaacttgat aaaaatcgtg caacaccagc acttgtagaa aatgatgggc
     4741 gtgattttgt gcctacaaat aaagctgtat tatttggaca tcattttgct gctattgcag
     4801 gagcaggtcc attagtagga cctatcttgg ccgctcaaat gggatatttg ccttctatgc
     4861 tttggatttt agtaggagga gttttagcgg gtgctgtgca tgattttgtt gttcttttta
     4921 tatctactcg tagaaaaggt agaagtcttg gcgagatgat taaggatgag atgggtaaat
     4981 ttacaggtgg agttgctatg gtggcgattt ttggcattat gcttattatt attgccattt
     5041 tagctatggt ggttgtaaaa gctttagcag aatctccatg gggtttattt actatcgcaa
     5101 tgacgattcc tatagcaata tttatgggaa tttatatgcg ttttatccgt ccaggtagag
     5161 taggggaggc ttctataata ggttttgtgc ttttaatttt ggctattcat tatggtagcg
     5221 ttatagctgc tgatccttat tgggctaaaa tatttacttt agaagctcca actttggcaa
     5281 ttgttatgat ggcttatggt tttattgctt ctgttttacc tgtgtggttt ttacttgctc
     5341 caagagatta tctttcaact tttttgaaaa tcggtgttat tgtggtaatg gctgtagcta
     5401 ttgttttggt tgctcctgat ttacaaatgc caaaagcaaa tactcagtat tttgatggaa
     5461 caggtccagt atttgcaggt ggagtgtttc catttttatt tattaccatt gcttgtggtg
     5521 cgatcagtgg ttttcatgct ttgatttcta gtggaactac tcctaaaatg cttgaaaacg
     5581 aaactcatac tttggctgtt ggatatggct ctatgcttgc tgagagtgct gtggcgatta
     5641 tggctttaat ttgtgcttgt attttacatc caggtcttta ttttgctata aattcaagct
     5701 ctgctttgat aggaacagat gttgtaaatg tagcacaaac tatttcaagt tggggattta
     5761 gtattactcc tgaagaaatt actactttaa ccacaaatat aggagagtat actatacttt
     5821 caagaacagg gggagccccg acttttgcta taggtgtagc tttgatcttg catgaacttt
     5881 ttggcggcgt ggatttgatg gctttttggt atcattttgc tatattgttt gaagctttat
     5941 ttattttaac agcggtggat gctgggacaa gggcttgtcg ttttatggtg caagatatat
     6001 tgggtaatgt ttataaacct ttaggagata ttcataatta tccagctgga cttttggcta
     6061 cggctttaag tgttgcaggt tggggatatt ttctttatca aggcgccatt gatcctaagg
     6121 gaggaattta tacactttgg cctctttttg gcgtgagcaa tcaaatgctt gcgggtatgg
     6181 ctttgcttct tgctacaact atacttgtaa aaatgggcaa ggcaagatat acttgggtta
     6241 ctttagtacc tgcggtattt gtcttagtgg caactctgta tggaggaatt caaaaaatta
     6301 tgccttatga agaaggcaat aaagtagcaa atgcggtaag tcatgtagcc gccgttagca
     6361 tacaaagtca aaaaattaaa gatttagaat ttaaattaaa taatactaaa gatgaaaaag
     6421 aaatttctgt aattaaaaaa gaaatttcaa tagccactca aagtaaagtt ggaaatttgc
     6481 ttaatgcaat tctttgtgtg ttctttatga tagctacctt gcttgttata atttcttgta
     6541 taggaatttg cttaggtaaa attaaaattc ctcttaaaga aactaagtat attaagattg
     6601 atgaatttca aaaaatttaa atattattat gaaaaagctg aaaggttttt tcatcccttg
     6661 gtgggacttt ctagttatga taagtattta gaacacatga aacaaaaaca tccaggaaaa
     6721 attccaaaaa ccagagggga atttttcaaa gaatgtctag ataaaaaata taatagtggc
     6781 ggtttaaata aatgctgata agcttaaagg ataaagtttt atcatacaaa ataagcttta
     6841 agcatttaaa aagccatgaa ttcttttaag ttcttcacta ataggctttt tctttccatc
     6901 tcttgtaaca cttacataag ttactaaagc cgaagttaca ttaatgcaag aagtacaacc
     6961 ttgagaatcc actctttgag ctgtgacttc tacttcaacg ctgattgaag tgttgcccac
     7021 atttacaact ttagagtaac aagaaattat atcgcctata aaaacaggtt ctttaaaaac
     7081 tactttatcc atagagatgg ttacaacgcg ttcaggagaa agttctcttg ctgcgatagc
     7141 tcctgctaaa tcgatttgtg aaagtatcca tccgccaaaa atatttcccg ctggatttgt
     7201 gtcacttggc atagctacaa tttttaattt tggttctccc atatctctca tttttactcc
     7261 ttattttaaa aaatgaatta taattaaaaa agttaaaaag gagaataaaa gtatgaataa
     7321 ttttaaagaa atagctaaat tagttagaaa atacaaagaa agaaataatg cgttatatga
     7381 gtttttagac aaagaagatg tgggcgagta ttttagatct ttgatttctt taagcgaatt
     7441 aaaacaagat aaaacaacta tgctagccat acttaggcgt ttggttgatt taaaggaaga
     7501 aaatttagtt caagagtgga aaaaaaacaa ctttaaggaa gataagatta tagagctaaa
     7561 acataagttc tatgaagagg ttagaaagtt ttatgaaaaa gaacatcaaa atttaattaa
     7621 tgaaataaaa gagaaaaaac ttttaaataa tttttatcag tctttaatac aaggagtgca
     7681 taatataggt ttaattatga atatttttga aatttcttgg actaaagaaa ttatagaaaa
     7741 aaataataaa attttatcta ctcaatttcc aaatttagat gatgcaatgg aatttttacg
     7801 taaaaatcat ttatatcaaa aaactc
//
LOCUS       DAPOLW010000074         7819 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.074, whole genome shotgun sequence.
ACCESSION   DAPOLW010000074 DAPOLW010000000
VERSION     DAPOLW010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7819
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.074"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(91..1341)
                     /locus_tag="ROE18_001148"
     CDS             complement(91..1341)
                     /locus_tag="ROE18_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HDX3651326.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDSFYKHNVNSAFVDSKGLAKKSVYELLNEQILPPLFPTSK
                     SQELAKKIIECLNEEGYFEHDEEFLKEYSLEEIERVRARFKFLDPVGVGAKDYKEAFL
                     FALENMELDEDIDEFCRMLIMDFENIQNYTKEPLYKEALAVLKRFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            complement(1341..2069)
                     /gene="lptB"
                     /locus_tag="ROE18_001149"
     CDS             complement(1341..2069)
                     /gene="lptB"
                     /locus_tag="ROE18_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HDX3651327.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            complement(2062..2469)
                     /gene="tsaE"
                     /locus_tag="ROE18_001150"
     CDS             complement(2062..2469)
                     /gene="tsaE"
                     /locus_tag="ROE18_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HDX3651328.1"
                     /translation="MKEFILAKNEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDVRVDSPTFSTMQKYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            complement(2466..2711)
                     /locus_tag="ROE18_001151"
     CDS             complement(2466..2711)
                     /locus_tag="ROE18_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HDX3651329.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVG
                     DIITLHFTEYTQKYKVLALPSTKSIPKNAQNEYVVKL"
     gene            2867..4087
                     /locus_tag="ROE18_001152"
     CDS             2867..4087
                     /locus_tag="ROE18_001152"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HDX3651330.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFSPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGDLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVMVIGRESANDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            4100..4543
                     /locus_tag="ROE18_001153"
     CDS             4100..4543
                     /locus_tag="ROE18_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HDX3651331.1"
                     /translation="MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFEIANLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTLKSLGIHEVSVKLGHAIHAKFNINIKAE"
     gene            4543..5085
                     /gene="hslV"
                     /locus_tag="ROE18_001154"
     CDS             4543..5085
                     /gene="hslV"
                     /locus_tag="ROE18_001154"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HDX3651332.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHTDLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            5082..6401
                     /gene="hslU"
                     /locus_tag="ROE18_001155"
     CDS             5082..6401
                     /gene="hslU"
                     /locus_tag="ROE18_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HDX3651333.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGDLDESTIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            6398..7273
                     /gene="era"
                     /locus_tag="ROE18_001156"
     CDS             6398..7273
                     /gene="era"
                     /locus_tag="ROE18_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HDX3651334.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENF
                     LSLNPQVPHIITLNKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDE
                     IVKYLDEHEYFYDPEFLSASSEKEIYRDFILESIYENLSDELPYSSEVLIHRTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNW
                     QKDEEFLKKLLNDEN"
     gene            7260..>7819
                     /locus_tag="ROE18_001157"
     CDS             7260..>7819
                     /locus_tag="ROE18_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651335.1"
                     /translation="MMKINSLNKINFIKSTDLLYAQRTGISKEDELFNNLTADFKLSK
                     PFDYQIAFFKHNEIYHCFLAPVYKLKKSRFCFPEPLIFQALFDERFIEESDYCVLNLY
                     DQTLYLYFYQEGKFINLKKIENFNPSNMDLFFKQNRFIELLKHYESKLLLYQDLDTIK
                     HYFSSQIKCLNLNDILDKNSLLKLSS"
BASE COUNT         2894 a         1288 c         1214 g         2423 t
ORIGIN      
        1 tctaaaaata aaacaataat tttttatatt atttaaatta aatttaaata taaaacaaaa
       61 gtgtaatggg tttgatagat tgatagaatt ttatccttca agttcatata atttttttct
      121 atctgtagaa cttgctatat taagatgttt gcgatatttt gtaatagttc ttcgccctat
      181 atcgacttta aattcttctt tgattaattc taaaatttta ctatcgctta aaggtttatt
      241 tcgatcttca ttctttacta aatttgctac aaattcttta acacctacat ttgaagtctc
      301 tccctcttca tcaagagcaa aagcaaaaaa atcacgcaag ggaataagtc ctctttcaca
      361 acttaaatat ttatttgcca cagctcttga tatagtcgaa gcattgcgtt ctaaatcaag
      421 tgctaaatcc ttaaaagtca taggttttat ctcttttccc atgaaaaaat catattgata
      481 ttctactatc ataagcccta ttttataaag agtagctttt ctcatcgcta aagcatcaac
      541 taaatttttt gcttctttga tgtaatgact taaaaaatca tgctctaaac catcagtttg
      601 gattgaaatt tcaggataat aatcatcatt gatttttact ttaatttcac cattttcttt
      661 ataaacaaaa atatcaggaa caattatacg agaatcttca aaatattcca aaaaaggagg
      721 agtgctaaaa cgcttaagta cagccaatgc ttctttatat aaaggctctt tggtatagtt
      781 ttgtatattt tcaaaatcca taatcaacat tctacaaaac tcatcaatat cttcatctaa
      841 ctccatattt tcaagagcaa ataaaaatgc ttctttataa tctttagctc ccactcctac
      901 aggatctaaa aatttaaatc ttgctcttac tcgctcaatt tcttccaaag aatactcttt
      961 taaaaattct tcatcgtgtt caaaatatcc ttcctcattt aagcattcta taattttttt
     1021 tgcaagttct tgagatttgc ttgtaggaaa caaaggagga agaatctgtt catttaaaag
     1081 ctcataaaca ctttttttgg caagtccttt actatccaca aaagccgaat ttacattatg
     1141 tttataaaat gaatcaaaat aattcttacc cttatcatga gtttgtatcg aatcttgaac
     1201 atttaagaaa ggattatcct cagcaaattt atctaaattt tcttttaaat cctctatatt
     1261 tgcttgtaaa atcggcaacc aagagcgtaa agtttgagaa attttagtct taggtgcttg
     1321 ggtgattttt tgctttaaca tcaatcaagg agtttaaact ccgctcctaa ataatacttt
     1381 ttcacgtctt tattggttgc aatttcatca gcattcccac tagcaagcaa agagcccgat
     1441 cttataacat aagctctatc acaaatagct aaagtctcac gcacattatg atcggtaatt
     1501 aaaaccccaa tccccaatct tttaagctct ttaattaaag tttgaatttc agccactgct
     1561 ataggatcaa cacctgcaaa aggctcatca agaagcaaaa acttaggttc acacatcaag
     1621 cttctagcga tctcacaacg ccttctttca cctccactta aacttaaacc tttccttaaa
     1681 cgaataggct ctatacttaa aagttcaagc atttgctcaa ctttatcatg taaaattttt
     1741 ttatctttat aaaaaatctg agccgctaaa agcaggttat cttctacgct taaatcctta
     1801 aaaatactac tttcttgagg taaataacct atccctgatc tagctctttt atttaaagga
     1861 tcttttgtca catctaaacc gtctaaaaga acttttccac tacttgggga aataagtcca
     1921 catatcatat aaaaagttgt tgtttttcct gcaccatttg gccctaaaag ccccacaact
     1981 tctccgctat taacctccaa agaaattcca tgtataatct tagttttttt aataattttt
     2041 tctaaattta caatttctaa tttactcata aatttcatac tttcttttgt catctttaat
     2101 gctaatttta atctggatag tagaaattcc aaatttcatt aaagtttttt tcaaattttc
     2161 accgccccat tcaaccaaat gcaaaccttt ttcaaaaaaa ttttcaaata aaccattcgc
     2221 taaaagtcct tctaaacctt cttgataaat atcataatga taaatgcaaa tatcatgatt
     2281 ttcatatttt tgcatagtgg aaaaagttgg agaatctacc cttacatcaa gaccaagaaa
     2341 tttaacccaa gcttgcacca agcttgtttt tccgctagcc aaatctcctt gaagcaaaac
     2401 aacaccttct ttaggcatta tttgaagcat cgttttgatc tcattttttg ctaaaataaa
     2461 ttctttcata attttaccac atattcattt tgtgcgtttt taggaatgct tttcgtacta
     2521 ggtagagcta gcactttata tttttgagtg tattcagtaa aatgtaaagt gataatatca
     2581 cccaccttaa cctctttact cgccttaaca ataacgccat taatccccac tacaccactt
     2641 ttacacatat cttcagaaat agctcttctt ttcgtgatat taactacatt taaaaattta
     2701 tctactctca taaaagcaat tttagcaaaa aaaatcaatt tttggaacaa aatttgctta
     2761 cgcctttgct ttattttttt aagaaaatag caagtaaaaa cttttcttta atgaaatttg
     2821 gatacaattt tataattttc aaatctattt taacaaagga tatcttatga aaaatgaagt
     2881 aaaaaaagta gttttagcgt attctggagg gcttgatacg agcattattt taaaatggct
     2941 tcaagatgag tataattgtg aagttgtaac ttttacagca gatattggtc aaggcgaaga
     3001 actcgaacct gcgagaaaaa aagccctttc tttaggcata aaagaagaaa atattttcat
     3061 taaagattta agagatgaat ttgttaaaga ttatgtattt cctatgttta gagccaatgc
     3121 aatttatgaa ggagagtatc ttttaggaac aagtatagca agaccactca tagcaaaaac
     3181 tcaagcacaa attgccctgc aaacaggtgc tgatgcggta agtcatggcg ccacaggcaa
     3241 aggaaatgat caagtgcgtt ttgaacttgg ttatcttgct tttagtcccg atttaaaaat
     3301 catcgctcca tggcgtgagt gggatttaaa cagtcgtgaa aaactccttg cttatgcgca
     3361 aaaacatggc attgatattt ctaagaaaaa aggaaaatcc ccttattcta tggacgcaaa
     3421 tttacttcat atttcttacg aaggacttgt tttagaagat cctgcacacg cacctgaaga
     3481 agatatgtgg agatggagta aaagcccaaa agacgctcca aatgaaagtg aaattataga
     3541 acttgatttc caaaaaggag atttagtagc gataaatgga gaaaaactaa gtcctgcagg
     3601 acttttaacc aaacttaacg aactaggctg caaacacggt ataggacgcc ttgatatagt
     3661 agaaaatcgc tatgtaggca tgaaaagccg tggttgttac gaaactccag gcggtactat
     3721 acttttaaaa gcacatagag cgcttgaaag catcacgctt gatagagaag cagcacactt
     3781 aaaagatgaa ctcatgccaa aatacgcgag tttaatttat aatggctatt ggttctcgcc
     3841 tgaaagaatg atgcttcaag ccttaatcga tgagtctcaa attcacgcca atggcagagt
     3901 aaagctcgag ctttataaag gcaatgtgat ggttatagga cgcgaaagtg cgaacgatag
     3961 cttgtttaac gcagcttatt gtacttttga agaagatgaa gtgtataatc aaaaagacgc
     4021 agcaggcttt atcaagctta atgctttgcg ttttatcatc gcaggaaaaa atggaagaaa
     4081 attttaataa aggaataaaa tgaaagtatt attaatcaaa gatgtaaaag cacttggaaa
     4141 agcaggagaa ataaaagaag taaaagacgg ctatggacaa aatttcttaa tcgctaaagg
     4201 ctttgctaaa gcagctacta atgaagtttt aagaaaatat gaaagcgaca agaaaaaaga
     4261 ggctgaaaat ttacgctttg aaatcgcaaa tttagaaaaa ctcaaagaag aacttagcaa
     4321 aatcactctt gaaatttcaa aacccgtagg tgcaaatgga agtttgtttg gtggcgtaac
     4381 caaagatgaa atcgctcacg ccctaaaaga acaaagccat atagaaatcg ataaaaaaag
     4441 tttagaatgt gataccttaa aaagcttagg aatccacgaa gtaagcgtaa aacttggaca
     4501 cgcaatccat gctaaattta acataaatat aaaggcagaa taatgtttca cgcaacaacg
     4561 attttagctt acaaaggtaa aaataaatcc gtaattggcg gagatggaca agtaagcttt
     4621 ggaaatacgg tgctaaaagg caatgctgta aagattagaa aactcaacaa tggcaaagtt
     4681 ttagcaggtt ttgcaggatc aacagctgat gcttttaatc tttttgatat gtttgaaaat
     4741 ctccttcaaa gttctaaagg cgatctttta aaagcagcaa ttgacttttc taaagaatgg
     4801 agaaaagaca aatacctaag aaaacttgaa gccatgatgc tcgtacttga tagaaatcac
     4861 atttttctac tttctggtac aggcgatgtg gtcgaacctg aagatggaca aatcgcagcc
     4921 ataggaagtg gtggaaacta tgcgctttca gctgctagag ccttagcaaa acataccgat
     4981 ttagatgaag aagaacttgt aaaatcaagt cttcaaatcg caggtgaaat ttgcatttat
     5041 accaatacca atatcaaaac ttatgtaatt gaggatgaga aatgaatcta actccaaaag
     5101 aaatcgttaa atttttagat gattatgtta taggacaaaa aaaagctaaa aaaatcatag
     5161 ctatagcttt aagaaatcgc taccgcagaa tgcaacttag ccctgagttg caagatgata
     5221 tagtgccaaa aaatatcttg atgataggtt ctacaggtgt aggaaaaaca gaaatcgcta
     5281 ggcgtttagc taaaatgatg ggctttcctt tcatcaaaat cgaagcaagt aaatatactg
     5341 aagtaggttt tgtaggtcgt gatgtagaaa gcatggtaag agatcttgcc aatgcggctt
     5401 taaatttggt aaaaaatgag caaagagaaa aaaacaaaga taaaatcgat gaatttatag
     5461 aaaataaaat tttagaaaaa cttttaccac ctttaccaaa gggtatcagc gatgaaaaac
     5521 aagaagaata taaaaacagt cttgaaaaaa tgagaactaa actaagaaat ggcgatcttg
     5581 atgaaagcac catagagata gaaatttcac aaaatatgtt tgataccaat cccaacctac
     5641 ctcctgaaat gggtgcaatg caagatatag ttaaggttat aggcgttggc agtaaaaaag
     5701 tcaaaaaaga aatgaaaatc aaagacgcta aaaatgcttt aaaaaatgaa gcaggagaaa
     5761 aaatcctcga ccaagaaagc atcaaaagcg aagccttaaa aagagcggaa aatgaaggta
     5821 ttatttttat tgatgaaatc gataaaatcg ctgtttcaag cggaaattca aaccgccaag
     5881 atccaagtaa agaaggggtg caaagagact tacttcctat agtcgaggga tcaaatgtac
     5941 aaacaaaaat aggtacttta aaaaccgatc atattctttt tatcgctgca ggggcttttc
     6001 atcttagcaa accaagtgat cttatccctg aactgcaagg acgctttcct ttaagagtgg
     6061 aattagatag tcttgatgat aaagctcttt atgaaatttt aacacgccct aaaaattcac
     6121 ttttaaaaca atactctcag cttttaaaaa ctgaaaattt agaacttgaa tttgatgatg
     6181 aagccattaa agaaatagca aaaatagctt caagagccaa tgaagaaatg caagatatag
     6241 gtgctagacg cttacatact gtgatagaaa aattacttga agatctaagt tttgaagctg
     6301 atgagtatgc gggtaaaaaa ttcgtagtgg ataaaaaaat ggtagaagaa aaactcggag
     6361 atatcataga aaataaagat cttgcaaggt atattttgtg aaaagtggct ttgttagtat
     6421 catagggcgt actaatgcag gaaaaagtac tttaatcaat tccttattag aagaaaaaat
     6481 cgccctagtt tctcacaaac aaaacgccac aaggcgtaaa atcaaagcca tagtgatgca
     6541 tgaaaaaaat caaatcattt tcatcgatac cccaggactt cacgaaagcg gtgctacgct
     6601 taatcaactg cttgtccaaa gtgctattaa atccatgggg gattgtgatg tgattttatt
     6661 tgtggcgagt gtttttgata gtacaaaaga ctatgaaaat tttcttagtc taaacccaca
     6721 agtaccacat atcatcactt taaataaagt agatttaacc gacaatgcta cacttttaaa
     6781 aaaacttagc gaatatgcaa aatttagcca acattttaag gctatcattc cttattcttc
     6841 taagaaaaaa agctataaaa aaggcttgtt agatgagata gtaaaatatc ttgacgaaca
     6901 tgaatatttt tatgatcctg aatttttaag tgcgagtagc gaaaaagaaa tttatagaga
     6961 tttcatactt gaaagtattt atgaaaattt aagcgatgag cttccttata gtagcgaagt
     7021 gcttatccat cgcaccaaag acacacctaa tcttttaatc ctagaagcca atatcatcac
     7081 agatacaaac tctcacaagg gtatgcttat aggaaaagaa ggggcaactt taaaaagaat
     7141 aggcaaagat gcacgcttta aaatttcaaa acttgcccaa aaaaaggtac ttttaaagct
     7201 ttttgtaaca gtgaaaaaaa actggcaaaa agatgaagaa tttttaaaaa aacttctaaa
     7261 tgatgaaaat taattcatta aataaaataa attttataaa atctacagat ttactttatg
     7321 ctcaaagaac gggaatatcc aaagaagacg aactttttaa caatttaact gcagatttta
     7381 agctaagcaa accctttgac tatcaaatag ctttttttaa acataatgaa atttatcatt
     7441 gttttttagc acctgtttac aaattgaaaa aaagtcgttt ttgctttccc gagcctttaa
     7501 tttttcaagc tttatttgat gaaagattta ttgaggaaag tgattattgt gttttaaatt
     7561 tatatgatca aactttatat ttatattttt accaagaggg aaaatttatc aatcttaaaa
     7621 aaatcgaaaa tttcaaccca agcaatatgg atttattttt taaacaaaat cgatttatag
     7681 aacttttaaa acactatgaa agcaaattgc tactttatca ggatttggat acaatcaaac
     7741 attacttctc atctcaaata aaatgtttaa atctaaatga tattcttgat aaaaatagtt
     7801 tattgaaatt aagttcata
//
LOCUS       DAPOLW010000075         7737 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.075, whole genome shotgun sequence.
ACCESSION   DAPOLW010000075 DAPOLW010000000
VERSION     DAPOLW010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7737
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.075"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..1678
                     /locus_tag="ROE18_001158"
     CDS             <1..1678
                     /locus_tag="ROE18_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HDX3651336.1"
                     /translation="SSSKDNKELINIVQQLEISDEKINSVFQNSFNFINYDPSVQAIK
                     KMQENFTKLKTFGIDINKAEEIFNAKLIQLNYFKSANSIAVNSKLYLFELAKNYFEEL
                     EQNHETNKNNYKTMSSMLSVLSTENILQKTTLNQLNNLMKEIKNDTKSENLQLFLKHY
                     NMIVKQISIMQDNSSIYENNSLMKELKQLNTFTQNTIEQSNLFKFYIALAVFGITLVL
                     FVFFILLTLKKVIMPIHTLEKLSANLASKEANLHSRLNIDPKSELGQSAQYINSFIST
                     VQNSIIEAIENAKSSHQNSQKLKNNSMMLENSSNSQHEQIQGVKEITHVLDDHINLAG
                     NLAQESIENMQDMHILMDKVELTLSELVNLINENNEKEQNIVANMDNLTQSADNIIEI
                     TNSIKDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVGQLADKTSKSLLNINATVN
                     TIVQQINDNKALMDLIHDSMKETSSKTNDLQQELVNSMHKLESSIESTQTMKDKSMEV
                     KDKMLILGTNIDKVNELANSVKDLSCEINNISQNVLNGASKLSEKLSSFQ"
     gene            1784..1951
                     /gene="dba"
                     /locus_tag="ROE18_001159"
     CDS             1784..1951
                     /gene="dba"
                     /locus_tag="ROE18_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HDX3651337.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            1963..3489
                     /gene="dsbI"
                     /locus_tag="ROE18_001160"
     CDS             1963..3489
                     /gene="dsbI"
                     /locus_tag="ROE18_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HDX3651338.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFETELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFVSTGIPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDKLKITNEQTINFDKVINTLDYINN
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSASIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGESLGRGRLDTVRAKFNHVASMTTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDCVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     TLSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(3510..4184)
                     /gene="queC"
                     /locus_tag="ROE18_001161"
     CDS             complement(3510..4184)
                     /gene="queC"
                     /locus_tag="ROE18_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HDX3651339.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCISDVPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            4261..5487
                     /locus_tag="ROE18_001162"
     CDS             4261..5487
                     /locus_tag="ROE18_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HDX3651340.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINERILPFVPEGLRDEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKALKYCDKIAAYIEAGLSISYGVKSKELESGFLGMYEFFKENPTIDG
                     VNFFEICESLREYFKI"
     gene            5579..5975
                     /locus_tag="ROE18_001163"
                     /pseudo
     CDS             5579..5975
                     /locus_tag="ROE18_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
     gene            complement(5987..7663)
                     /gene="ilvD"
                     /locus_tag="ROE18_001164"
     CDS             complement(5987..7663)
                     /gene="ilvD"
                     /locus_tag="ROE18_001164"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HDX3651341.1"
                     /translation="MRSDAIKKGHLRAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNDYAKIIKDEIRKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSRELIANSIE
                     TVMNAHQLDALICIPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYESKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLKERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAEQGCVI
                     KTAGIIGERKFKGKAVCFNSQDEAIKGIIKGKVQKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANVSEEEIAKRKKEFALPQKEVSSRWLRMYQKLVSNASKGAVLDME"
BASE COUNT         2663 a         1300 c         1193 g         2581 t
ORIGIN      
        1 ttcttcatct aaagataata aagaattgat aaacatagtt caacaactag aaatttcaga
       61 tgaaaaaatc aattctgttt ttcaaaatag ttttaatttt atcaactacg atccaagtgt
      121 tcaagcaata aaaaaaatgc aagaaaactt tacaaaactt aaaacttttg ggattgacat
      181 aaacaaagca gaagaaattt ttaatgccaa attaatccag cttaattatt ttaaatccgc
      241 aaattccata gcagtaaatt caaaacttta tttatttgaa ctagctaaaa attattttga
      301 agaattggaa caaaaccatg aaacaaataa aaacaactat aaaacaatga gttctatgtt
      361 aagcgttctt tcaactgaaa atattttaca aaaaacaaca ctaaatcaac tcaacaatct
      421 tatgaaagaa atcaaaaatg atacaaaaag tgaaaattta caactttttt taaaacacta
      481 taacatgatt gtaaagcaaa tttctattat gcaagataat tcttctattt atgagaataa
      541 ttctctcatg aaagagttaa aacaacttaa cacttttacc caaaatacta tagaacaatc
      601 taatttattt aaattttata tcgctttagc agtatttgga attactcttg tattatttgt
      661 attttttatt ttattaacac taaaaaaagt catcatgcca attcatactt tagaaaaact
      721 aagcgctaat ttagctagca aagaagccaa tctacactct cgtttaaata tagatccaaa
      781 aagtgagctt ggacaaagtg ctcaatatat taattcattt atttccaccg ttcaaaactc
      841 aatcatagaa gccatagaaa atgctaaatc aagtcatcaa aattcacaaa aactcaaaaa
      901 caactctatg atgcttgaaa acagctctaa ttcgcaacat gaacaaattc aaggagttaa
      961 agaaatcact catgttttag atgatcatat caatcttgcg ggaaatttag cacaagaaag
     1021 tatagaaaat atgcaagata tgcacatact aatggataaa gtagaactta ctctatctga
     1081 acttgtaaat ttaataaatg aaaacaatga aaaagaacaa aatatagtag ccaatatgga
     1141 caatctaacc caaagtgcgg ataatattat agaaatcaca aactccatta aagacatagc
     1201 tgatcaaact aatttacttg ccctaaatgc agctattgaa gctgcaagag caggcgaaca
     1261 tgggcgtgga tttgctgttg tagccgatga agttggacag cttgctgata aaacaagtaa
     1321 atctctttta aacatcaatg ctactgttaa tactatagtc caacaaatca atgacaacaa
     1381 agccttaatg gatcttatcc atgattccat gaaagaaacc tcttcaaaaa ccaatgattt
     1441 acaacaagaa cttgtaaatt ctatgcataa attggaaagc tctatagaat caacccaaac
     1501 catgaaagat aaaagcatgg aagtaaaaga taaaatgctt atcttaggaa caaatataga
     1561 taaagttaac gaacttgcaa attctgttaa agatttatca tgtgaaatca ataatatctc
     1621 tcaaaatgtt ctaaatggtg cctctaaact ctccgaaaaa ttaagtagct ttcagtaact
     1681 tttttcacgt taatttaact taacgtgaaa tttcaataaa aattttattt ttaatttatg
     1741 tttttcaagt aaaattagca gtttttattt caaaggagat actatggagt ttcttgaact
     1801 tttattagtt ttaatcgcct tgatactgat tatcaaaaaa ccagaaaaag aaaatttggc
     1861 ttttggtttg gtaatggtag cttggctttt aatggttttt ttctatgttg gccacaaaac
     1921 aggcgcacta ttaacaataa tgaatctgta aggaagggct aaatgaacga aatcaataaa
     1981 acaaaaaatt tctacacact aatgtgttta gcaggctttt tgattatact cttgcctgta
     2041 ggtattgcaa atttgatatt tggttatatg ttgggcgata gtccttgcac gctttgctgg
     2101 ggacaaagag aagcaatgat ctttatcggt gtaatggcgc ttttcattgt tcgttatggt
     2161 atgaaaggta aataccttgc cgctctttta atcatgacag cagtagggct ttatcagtct
     2221 tttgctcact atggtaacca cgctcataga gatttagatc aaggttttgg tttagcagtt
     2281 tttggtatcc atacttattt ttgggctgaa gtagtatttt gggctgttgt attgctttta
     2341 ggtgtgattt ttgcttttgc tcctaaattt aatgcttttg aaacagaatt aaacggagaa
     2401 aaatttagaa aatatactaa atttagcttt gcagcagttt taatcagtgc tatcatcgta
     2461 gcatcaaatg ttttccaagc ttttgtaagc acaggaattc ctccttatgt aggacaaggc
     2521 gatcctgtaa gatttagttt aaatccaaaa tacatcattt ggagtaaaga aggttggaat
     2581 ggtttatggc aaaatatttc tttcttagga aaacgcgatg ttaaagctcc tgattatgct
     2641 tttgcacctg caagtgaaaa acttggcata aaatttgata atgatatcaa caatgctcca
     2701 tttgcaaaaa tcaatgataa gcttaaaatc acaaatgaac aaaccataaa ttttgacaaa
     2761 gtcatcaata ctcttgatta tatcaataac gaatttgtag caagttctaa atgggatgta
     2821 gctttcttag ataataattt tagcgttaaa gaaggttttg aacttgatcc ttatttttca
     2881 gcttctatcg atccaatcat cggtatcata ccttatatga acgataaatt cattcttatg
     2941 ggctcaaaca aatctttctt aagatttgca aaaaatccta atgcaagtga agaagatatc
     3001 gctaaacaat acgctgactt tgtaaaaggc aatgataaat ttaaaggtca aggcgaaagt
     3061 ttaggtcgcg gaagacttga taccgtaaga gcaaaattta accatgtagc aagtatgact
     3121 acagatggaa attatcttta tcttgcaact gttccaaaca acaaagacgc taaaactttt
     3181 gtaatctcta aagtttcttt aaaagattgt gttctttcag gagaatttac tccaaaagca
     3241 aatcttaaag aaggtaaaac tttaggcgat ctttatgtaa cttctatgac ttttaaagat
     3301 ggggaaattt atacacttag caaaaatcac aatgtgattg ccgtaattga tccagtcaaa
     3361 gaagaagtag tgaaaactat cgctttccca agctctatca ctaatgctag aagcattttc
     3421 tttaaagatg gaaaaatcaa tattctttct tatcaagatg gagcaaacaa gctttatact
     3481 ttaaactaag ctttaagtcc tagtgaaaac taggacttat atttaatctt atctttaaat
     3541 cctgcttttt caaaacctct taaacgaagc aaacaactat cgcactcccc acaagcttca
     3601 tcttcactct cataacaaga ccaagtaagt tctaaaggta cattttcttt taaggctagt
     3661 tctacaattt tagctttgtt tagtctaaca agcggagttt ttatacaaac tttgaaattc
     3721 ttactcgtac cttcattgat aaattcttgt gccttttgta taaactcatc agtacagtca
     3781 ggataaccac tgccatcttc ttctaccacc cctataaaaa tactctcaca attttccttt
     3841 tcagccaaag atcctgctat gcttaagaaa attccattgc gaaaaggcac ataagtgata
     3901 ggtgggacat cgcttatgca aagctcattt ttagggatat ctatactttt atcggttaag
     3961 gcattacccc ctatatcttt gataaaactc acatctaaaa tataagattt ttctactttt
     4021 aaagccttgc aaatttgctt aaaacattct ttttcttttt cttgagtgcg ttgttcatag
     4081 tcaaaatgca aagcgatgat ttcataacct tcttttttgg ccagataagc acacaaagta
     4141 ctatccatac cgccacttat gatacaaagt gcttttttac tcatttttat ccttaaattt
     4201 gctataattt cataatttta acgaaaattt ttaaatttaa attgcaaaaa aggcaaaagc
     4261 atgataaaca taaaactcat agaacacatt tttaaagccg cttctatcag tcgttggaat
     4321 gattatccaa gaatggcaaa tttggttgaa cttgacaaac aagctcataa attcatcatc
     4381 gcatatttta tcgctaaaat ggaaaaagat gtggatatga gagtgattat agaaggggga
     4441 atttttgagt ttttaagtcg tgttgtggta actgatatac gccctgatgt gtatcatgaa
     4501 atcgtgcgtc aaaaaaaagc tgaagttaat gcttgggttt taagcaaaat cgaacctatg
     4561 atagaagata tagaagatgg ggaatttcta aagcgttttg aagcgtattt aaacggtaat
     4621 gcttatgcta aagaaagact tatcttaaaa gcagcttcat attttgctac aagatgggaa
     4681 tttaacatag tttatcaaac ctcagctttt ttaaatgata ttgatgagat taaaaacaaa
     4741 gttgaagaag aattagaaga ttactatgag cttataggag ctagaaaaat tgctttaaat
     4801 caaaaaatag ccaaaattat tgatcttagc ggaagacttc gctttcaaaa acgttgggct
     4861 caaactccac gcataccaga aaccgcggtt ttaggacata tgcttgtggt ggcaatttta
     4921 ggatattttt actcactaaa aatcaaggct tgcgataaaa gacttgagaa taatttttat
     4981 tgtgctttgt ttcatgattt gccagagtct ttaacacgtg atattatcag ccctgtaaaa
     5041 tacggcattg atggacttca tgatatcata aatgattatg aaatgaaact tattaatgaa
     5101 agaattttac cctttgtacc tgagggttta agggatgagt tttcttatat tttaggcatt
     5161 agagaaggta gaaacggtga gtcaaatttt gtaaaaaatg agtttgaaaa tcgcacttat
     5221 aaaaatgcta aaatcgagct ttgcagcgga agtttaagct cttttaatga aaatgaattt
     5281 ggtgctatag atggtaaggc gcttaaatac tgcgataaaa ttgctgctta tatagaagca
     5341 ggacttagta taagttatgg tgtaaagtct aaagaacttg aaagtggttt tttaggaatg
     5401 tatgagtttt ttaaagaaaa tcctaccata gatggggtga atttttttga aatttgtgaa
     5461 agtttaagag agtattttaa aatttaaata agatttttat actactattt tcaatatgtt
     5521 ttaaataaaa atattataat ttcaaatttt attttgtata aaatataaag gagttattat
     5581 gaaaaaatac tttcaaaagc gctatacttt agcctttttt ataggtatat tagcgggtat
     5641 tttcggagct attgttaaat ggggttggga agtacctttt cctccaagaa atcccaatgt
     5701 tttttgacca gcagatgctt tagaacgtgt tactccacct aaaatttttc tagaacaact
     5761 aggcttacct actgaaaggt gcagtttttg gattttttgt ttatcttttt gcccatgtta
     5821 ttgtaatgcc tttaattgca gaagttccac cactttctga aattcctttt gatgaacacc
     5881 tgtctgaaat ttttggccat attgtttggc tgtggggcat ggaaatagtt cgtagagata
     5941 taagaaatcg tataaccaaa gaaatagaag aatgaaagga aacctttcat tccatatcta
     6001 aaaccgcacc tttactagca ttgctaacaa gtttttgata cattctaagc catcttgaag
     6061 acacctcttt ttgaggcaat gcaaattctt ttttacgttt agcaatttct tcttcgctta
     6121 catttgcatg gatagtataa gcatctacat caatttctat ttcatctcca tcttttaaaa
     6181 gtcctataag accaccttca gctgcttcag gggaaatatg accaacgctt aaaccccttg
     6241 tagccccgct aaaacgacca tcggtgatta aagctacatc agcacctaaa cccataccca
     6301 ttaaaagtga agtaggactt aacatttctt gcataccagg accccctttt ggaccttcat
     6361 agcgtattac acaaacattt cctttttgca ccttgccttt gataatgcct tttatagctt
     6421 catcttgaga gttaaaacaa acagctttgc ctttaaattt tctttctccg attattcctg
     6481 cggtttttat aacgcaacct tgctcggcta aatttccaaa caaaatggca agcccaccta
     6541 cttttgagta agcattatct actttacgaa tgatattttc atctttgatt ttggcatttt
     6601 ttaagcgttc tttgagactt tctcctgtaa tggtcagtgc atcaagttct aaaatatgtc
     6661 cttgtctgct tgaaatttca gccataactg cactcacacc gcctgctttg tggatatcat
     6721 ccatataaac actatttagc gatggggcta tttttgctat gtgtgcaact ttgcttgaga
     6781 tgaaatttaa atctttaatg tctagtgcta cccctgcttc acgcgaaatg gcaagcatgt
     6841 gtaaaactgt attgctactt ccacccattg ccatatctac taccatagca ttacgcacag
     6901 ctttttgagt gatgatatta cgaattttaa aacgctcatc tagggcgatt tcacaaatac
     6961 gacgcgctgc ttttcttaaa agctcttctc tttctttact taaagctaag atggttccat
     7021 taccttctag tgctataccc atagcttcgc ataaggtatt catagaattt gctgtaaaca
     7081 ttcccgaaca agatccacca cttggacagg ctgaacattc tatatcttta aattcttctt
     7141 cactaatttt tttggattca taagccccta cagcttcaaa aacagagcta aggctgatct
     7201 tttctccttt tttggttact cctgaagcca taggcccacc acttacaaaa atggttggaa
     7261 cattgaccct taaagctccc attaacatac caggagtaat tttatcgcag tttggaatac
     7321 agattaaagc atcaagttga tgagcattca tcaccgtttc aatagaattt gcgataagtt
     7381 cacgacttgg taaagaataa agcatacctt catgtcccat agctatacca tcatctacgc
     7441 ctatggtatt aaactcaaaa ggtacgcaac catttttgcg tatctcatct ttaatgattt
     7501 tagcataatc atttaaaaaa taatgccctg ggattatatc tatatagcta tttgctacac
     7561 ctataaaagg tttgtcaaaa tcttcatctt tcaaaccaca agcacgaagt aaagaacgat
     7621 taggtgctct taaatgtcct ttttttatcg catcgcttct cattgtaact cctgataata
     7681 attttttaaa attatattta gcaaagctta atttttgtga aatttatttt gatatac
//
LOCUS       DAPOLW010000076         7696 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.076, whole genome shotgun sequence.
ACCESSION   DAPOLW010000076 DAPOLW010000000
VERSION     DAPOLW010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7696
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.076"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..145)
                     /locus_tag="ROE18_001165"
     CDS             complement(<1..145)
                     /locus_tag="ROE18_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651342.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKNKLNTAECAIILSVNKDNY
                     ERYF"
     gene            complement(173..898)
                     /locus_tag="ROE18_001166"
     CDS             complement(173..898)
                     /locus_tag="ROE18_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HDX3651343.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRRQLVAQRNK"
     gene            complement(891..2882)
                     /locus_tag="ROE18_001167"
     CDS             complement(891..2882)
                     /locus_tag="ROE18_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HDX3651344.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVTKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLNG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKHNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            complement(2866..3648)
                     /locus_tag="ROE18_001168"
     CDS             complement(2866..3648)
                     /locus_tag="ROE18_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HDX3651345.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFEGKNVKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTQTTAMIKNYNGANYEYTI"
     gene            complement(3718..4533)
                     /locus_tag="ROE18_001169"
     CDS             complement(3718..4533)
                     /locus_tag="ROE18_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HDX3651346.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKTNPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            4623..5522
                     /locus_tag="ROE18_001170"
     CDS             4623..5522
                     /locus_tag="ROE18_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDX3651347.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPID
                     SGVSIALVPINIEQNNNYSDYFENSVLKIRIEKEIDLLKQNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNVQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSSTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENAPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            complement(5597..6385)
                     /locus_tag="ROE18_001171"
     CDS             complement(5597..6385)
                     /locus_tag="ROE18_001171"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HDX3651348.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAIKALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRSKERFKDFLAYPTYLY
                     KNLQDFDFDLVINSTSAGLKDENLPCDRELLDRILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIQDKREMIKNAMQQALILK"
     gene            complement(6382..7218)
                     /locus_tag="ROE18_001172"
     CDS             complement(6382..7218)
                     /locus_tag="ROE18_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HDX3651349.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LINGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAEDQFEALRKQFQDEQ
                     NTTQNTTTSSSNNNDTTNFAMPDQEVPAEPTATTSANTTPQASTPKQEVTQTAKSKEE
                     AKKQTAVKKEKESAKQTPKKEQNANDLFKNVDAKPVHPSGLASGIYVQIFSVSNLDQK
                     SKELASVKQKGYDYKLYKTTVGSKEITKVLIGPFEKADIAAELAKIRKDIAKDAFSFT
                     LK"
     gene            complement(7232..>7696)
                     /locus_tag="ROE18_001173"
     CDS             complement(7232..>7696)
                     /locus_tag="ROE18_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HDX3651350.1"
                     /translation="ITHRGRLFFDKFERVDAPLNLNVMREHAAKKIVVAHDLITKDNK
                     VENIVFDYNGFNAERFYHRAQLILREEGFINFTAYKTKTPGHLHLYIHKGHTALNEGY
                     SLASKLSMMFASKMPVEWKVFPSMDVPREFNILILPYEVYQKERGSSWSKHM"
BASE COUNT         2602 a         1517 c          972 g         2605 t
ORIGIN      
        1 gaaaatatct ttcataattg tctttattga cacttaaaat aatcgcgcac tcggccgtat
       61 taagtttgtt tttatcttga aatttagcat caaaatttaa aaattgaagt tcattttgcc
      121 aaattttttg gaataattct ttcataatct tccccttaaa aaggggaaag atttatttat
      181 ttctttgagc gacaagttgt cttctcatgt aagcgatttt actttgtaaa ggtaattctt
      241 taggacaatt atcttcgcaa gcaagcaatg acatacaacc aaaaacacca tcatcatcgc
      301 ccactaattc ataaaaatct tccacacttc tatggtcatg cggatcttgt aaatatctag
      361 ctgttcttaa aagtcctgta gcagctatga aatttggacg cataagttta gttgcacaag
      421 aagctacaca aattccacac tctatacaac gatcaagttc aaaagtttca tccgcaacct
      481 ccggctcaat acgttcttca agtttagaaa tatcagtttc tttttcgtta tgcacccagc
      541 tttcaacgcg tttacacatg tcttcaaacc actctcctgt attcacgctt aaatctttaa
      601 tatgtctaaa tgcgggcata ggcataagct ctatcactcc atcaggataa tctttagtca
      661 aagttttaca agcaagtttt ggcactccat taatcatcat cgcacaagat ccacaaatcc
      721 ctgcacgaca aacaaagtca aaactcagat ccgcatccat tttttcacga atcaaagtca
      781 aacatacaaa aaccgtcata aaaggagttt cttcaagctc gtaagtcaca aaatgtggtt
      841 tagaaatttt gcttaaagga ttatatttaa atgcctttat tgtcaatttt ctactcataa
      901 tcaactccta ttctttggtt tggtgcttta tatttagctt gtaattcata aggcattaaa
      961 gcgttttgaa tttcataacg acctttgcct tcagcttcca ttttttcacg tattgcatcc
     1021 acttcagctt ggcgtttttc acttaaagga ttttctataa tatttccttt ggctccgtat
     1081 ccacggaatg ctggtggaat ttccattttc ataatatcaa gctcttcgta ttctatgcgt
     1141 ggtaaggttt cgccttctac ccaaaaagta ttggttcttt tcatccaatt taaatcatct
     1201 ctttttggat aatcttccct ataatgcgct ccacgacttt ctgttcttaa aagcgctcca
     1261 taagctacgc aaagtgctat ttttaacatt cttggcactc tatacgcttc ttcaagctct
     1321 ggatttgcac aatcaagttc tttacaatgt actttaacgt cttgagaatc tttataaagt
     1381 ttttcaagtt catctactgc ttctttcaaa ccttcacctg ttctaaagat ggccacctta
     1441 tcccacatga tttctttcat tctgtttttg atttcaaaaa cattatgttt accttcttta
     1501 tctactaaag attttaaata ttgatactct ttagttaaga agtcttttac tacatttgtg
     1561 tcaattactt caccattatt tttacaataa tctgcaaaat aatctcccac tatcatacct
     1621 gctacaacag tttcagcaca tgaatttcca cctaaacgat taaatccgtg catatcccag
     1681 caagctgctt ctccacaagc aaaaagtccg tttaaccatt gactttcacc cgttggttta
     1741 gttctaattc cacccataga ataatgctgc attggaagaa ctggcgccca accttttgga
     1801 ccctcatctg ctggatcaat accattaaaa gttttacaaa tatcttgtac atcgcggaga
     1861 tttttttcca catgagctct tccaagtata gaaatatcaa gccataaatg atccccataa
     1921 gggcttttta cacctttgcc tttacgaata tgttccatca ttctacgact taccacatca
     1981 cggcttgcaa gttctttttt ctctggttca taatcaggca taaaacgata tccatccaca
     2041 tcgcgtaaaa ttccaccatc accacgacag ccctcagtaa gcaaaatacc gcttggcaca
     2101 ataggagttg gatgaaattg cactgcttcc atatttgaaa gtctgcaaag ccctgtttca
     2161 agagcgatgg ctgcacctgt tccttcacaa attaccgcat ttgtagtttg tttataaatt
     2221 ctaccatagc cccctgttgc tatcatggtt cctcttgcaa tataagcaat gagttgtcca
     2281 ttagttaaat ctctagcgat cacacctaag cattttttac catcatggat aattcttact
     2341 gcttccattc tatcaataat ttttacttga tgtttaatag cttcatttgc tacaccataa
     2401 agcatacaat gccctgttgc atctgcgata tagcaagttc tccatttttt agttccacca
     2461 aaatctctag cattaataag cccgtgcgct tcttcttttt cttcaatcac agttttttgt
     2521 gcattgatta caacagttct tggaccttta gtaactctag tccaaggcac accccaagcc
     2581 gcaagctcac gcactgcttt tggcgcagtt tgagcaaaca ttcttgctac ttcttgatca
     2641 cagccccaat cacttccttt tactgtatct gcaaagtgaa gatcttcatt atcaccctca
     2701 ccttttgccc catttgctaa acttgcctgc atacctcctt gcaccgctgc agagtgagaa
     2761 cgcttcactg gacaaatact taaaagtgtt acactttggc cactctttgc tacttcaata
     2821 gccgctctaa gacctgctaa tcctccgcct attactaaag catcactata ttgtatattc
     2881 ataatttgct ccattgtagt tttttatcat cgcagtagtt tgggtttgat tttggtagtt
     2941 ttcataacct atttttataa atgctgcaag acttaacaca cctaaaacta ggaagaaaat
     3001 actgattatc catttagcag ttttaagctt tttgcgactt tcttttacat tttttccttc
     3061 aaaccaaccc catttaacac aaagtctata aagccctata cttccatgaa gttcaacaca
     3121 gactaaaaga acagcataaa aaagccacat aaaatgactt acaaccctat ctcctgacat
     3181 atcgccgctg attttatctg cattggttac aataaaaata agatgagcag aacctaagaa
     3241 aaacataata aaacctgtaa aagcttgaac ccaccataac gaagtatcgc tgtgattcat
     3301 ttttttactg tgtgttctta gtatttgata ctgacggtaa ttaataggaa attttctcat
     3361 tgcaagtaaa gcatgaacga aaaaaaccac taaaacacag gcggctaaaa atgaagtaag
     3421 ataactcata acaggattat cgtaaacaaa ttttaattct aaaaaatgca ctacagaatt
     3481 aaaaaaatcc tcactgacta aaattgtaga aacaaaaagc atatgcaccc acataaaaag
     3541 acctaaaaaa agccctgaag cactttggat aaagtctaat ttcgcaggca ttttactttt
     3601 tttgccctca atgctcttac ccaaataacc ttcgataagc tcacgcatct ttactccttt
     3661 gcaaaaagaa attaaaaaaa atccatttca ttatattaca aaagtcttta agatagatta
     3721 aatatttact tttttaaact ttatacaaat ataaactaac aaagctgtta taaacattat
     3781 aaaacttaaa atttgcccca tactcatacc ccataaaaca aaacctatac caaaatcagg
     3841 ctcgcgataa aattcacata taaatcttgc caatgaataa gcaccagcat acacaagaat
     3901 caattcccct tgaaagcttt gcttaaatct tgctaaataa actataataa aaacaacaat
     3961 accttctaaa aatgcttcat aaagttgcga tggatggcgc aatactccat caacataaat
     4021 tccccaaggc acatttgtaa tgcgaccaaa aagctcttga tttaaaaaat ttcctatacg
     4081 accaaaaaca taagccaatg gaacacttaa agcaaccaaa tcaagaaaaa tccaaggatt
     4141 tgttttatat tttttacaaa acaataaagt agctatcaaa aatcctataa ttgctccatg
     4201 ataactcata cctcgaatac ctacaaattc accattaata taaggattaa aaatttgcca
     4261 aggatgagta atataataca tagtatttgc atcataaatc aaaatatatc caagtcttgc
     4321 acctaaaata acccctattt caacccatat aaaataacta tccaaatgtt tttcattaat
     4381 gtctagttga aattttctta caaaaaattt agccaaaagc aaagccaaaa gcaaagctat
     4441 aacatacata atgccatacc aatgcacctt taaaccaaag atgctaaaag ctataacatt
     4501 aaaatttgaa taaatatgct gccaaaattc catatatctt tcctaatttt cttttataaa
     4561 aatataacaa aaaaacttta acttgctata attaacacaa acacattaaa taaaggtaaa
     4621 aaatgaaaaa atatatttta cttgctagta gtatgttaat tttagcagct tgtgggggta
     4681 caagtagtaa ttttgtcaat gtttctatgc caaattttaa accccaagtt ccaacaaagg
     4741 ttgaacctat tgattctgga gtaagcattg ctcttgtgcc tattaatata gaacaaaata
     4801 acaattattc tgattatttt gaaaattcag tgcttaaaat tcgcatagaa aaagaaattg
     4861 atcttttaaa acaaaattta gaagagcaga tcaaaaccat cgctcaacta aaaggctata
     4921 aaatagttac tactaatcca gactacactc ttaaaagttc aatcagtatt tatacggaag
     4981 aaaaaaatgt acaaaaaaca agcaatttta tgagtggaga ttatgtaaaa tccaatttag
     5041 gtataaattt taaaggtaaa atagatttta tagatgcaca caatccacaa aattcaacca
     5101 atctttcaag tagcactaaa ctagattctt tagttgcgct taactatcct attaaaaatg
     5161 atgatggggt taatatgttt aaaactacta tctctaccgt accaactcaa ctcaataaag
     5221 gtttagagca acctgctttt gaaattgata aaagtttttt agctttttat aaaaatacat
     5281 taaatacact ttataacaat ctaccaaaag caacagacat aggcaaaact atacctaata
     5341 caaacagtgg ttttaatagt tttgatggcg atgctacctt tgaagaaagc ttacctcaaa
     5401 caaattctaa tcaaaataat acaattgaaa acgcgcctac acaaaatatt cctacaaatc
     5461 catcttcaac aaatcaaaat aatcaaagta aaaatcaaga tggggtagaa atatttgaat
     5521 gataaaactt gtgggaaaat taaactttct cacacaaaaa ataagatttt cttatacaag
     5581 aaaaataact atcattctac tttaaaatca atgcctgttg cattgcattt tttatcatct
     5641 ctcttttatc ttgtatttca aaaaaaagtt caaaagcaaa aactccttgc cataaaagca
     5701 tatcaagtcc atctttaatt tttaaatgat actctttaca caatctataa aaaggtgttt
     5761 ctctgccata aattacctca aaagcaaatt tagctttagg taaaattcta tctaaaagct
     5821 ccctatcaca aggtaaattt tcatctttta atccagcaga agttgaattt ataaccaaat
     5881 caaagtcaaa atcttgcaag tttttataaa gataagttgg ataagctaaa aaatctttaa
     5941 atctttcttt actacgatta gctatataca cttctacgcc tttttgtttt aatgcataag
     6001 caagcgccaa agctgtacct ccagcaccca aaatcaaagc tttttttata ttatcaaaat
     6061 ccttaatagc ttctaaaaaa cctaaagcat cagtattata agcgtaaatt ttatcttctt
     6121 ttaagcataa agtatttgca gagccaatat ttctagcaaa atcatccttc acatcagcaa
     6181 tatctaaagc tttttcctta aaaggcaaag taatattagc tccactaagt cctaatttaa
     6241 aaaaatcttc tcttaaacag ttagcatttc ttaaatgata gcgtgtataa atgctatcaa
     6301 gccctaaggc tttaatagca ttattatgca ttctaggcga tttagagtga gaaataggat
     6361 cgcctataac tgctaaaaat ttcattttaa agtaaaagaa aaagcatctt ttgcaatatc
     6421 cttacggatt ttagcaagtt ctgctgcaat atctgccttt tcaaatggtc ctattaaaac
     6481 cttggtaatt tctttacttc caactgtagt tttataaagt ttataatcat aacctttttg
     6541 ctttacagaa gcaagttctt ttgatttttg atccaaatta cttactgaga aaatttgcac
     6601 ataaataccc gatgctaaac cacttggatg tacaggttta gcatcaacat ttttaaataa
     6661 atcatttgca ttttgttctt ttttaggggt ttgttttgca ctttcttttt ctttttttac
     6721 agctgtttgt ttttttgctt cttctttaga ttttgcagtt tgtgttactt cttgtttagg
     6781 agtacttgct tgtggagtgg tatttgctga agtagttgct gttggttctg ctggaacttc
     6841 ttgatcaggc atagcaaaat ttgtagtatc attgttattt gaactagagg ttgttgtatt
     6901 ttgagttgta ttttgttcat cttgaaattg ttttcttaat gcctcaaatt gatcttctgc
     6961 tgaagtatta tctgtaattg gcatactttc aaaagaagta tcattgttat tgtcttgagt
     7021 tgctataggt tcacttggca atacactttg attttgcgta ttttcatcac cactaccatt
     7081 aataagcttc ataactatca tgatagctaa aaacaaaata actaaagcaa taactcgtaa
     7141 aagaattttt tttacttttt cacttttatt acttttttct aaaataatat catcaaattc
     7201 atttttttga ttttccataa tttgtccttt cttacatatg cttagaccaa gaacttcctc
     7261 gttctttttg ataaacctca taaggcaata ttaaaatatt aaattcccta ggtacatcca
     7321 tgctaggaaa caccttccat tctactggca ttttacttgc aaacatcatt gaaagtttag
     7381 acgctaaaga ataaccttcg tttaacgccg tgtgtccttt gtgaatataa agatgtaaat
     7441 gtcctggagt tttagtctta taggctgtga aatttataaa accttcttct cttaaaataa
     7501 gttgtgcacg gtgataaaat ctttcagcat taaaaccatt ataatcaaag acaatatttt
     7561 ctactttatt atcttttgtt attaaatcat gagcgacaac aattttttta gcagcgtgtt
     7621 ctctcatgac atttaaattt aaaggagcat caactctttc aaatttatca aaaaataagc
     7681 gacctctatg tgtaat
//
LOCUS       DAPOLW010000077         7678 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.077, whole genome shotgun sequence.
ACCESSION   DAPOLW010000077 DAPOLW010000000
VERSION     DAPOLW010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7678
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.077"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            18..377
                     /locus_tag="ROE18_001174"
     CDS             18..377
                     /locus_tag="ROE18_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HDX3651351.1"
                     /translation="MDIIFANQSLYYIPLKELKQNILEFYELLNTGGILFATMMSKKN
                     YYFSHSQKEEKNGLSKVEINGRLNETSFIHFIDKAQDLENLFQPFETLFLGDYDPINF
                     YNFEGSAHHYIYIGIKK"
     gene            428..1432
                     /gene="legI"
                     /locus_tag="ROE18_001175"
     CDS             428..1432
                     /gene="legI"
                     /locus_tag="ROE18_001175"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HDX3651352.1"
                     /translation="MKKTLIIAEAGVNHNGDLNLAKKLIEIAADSGADFVKFQSFKAK
                     NCISTKAKKAPYQLKTTASDESQLQMVQKLELDIKAHKELILHAKKCNIAFLSTPFDL
                     ESVDLLNELGLKIFKIPSGEITNLPYLKKIAKLNKKIILSTGMANLGEIEEALNVLCK
                     NGAKRQNITLLHCTTEYPAPFDEVNLKAMQSLKDAFKLDVGYSDHTQGIHISLAAVAL
                     GACVIEKHFTLDKNMSGPDHKASLEPHELKTLCTQIRQIQKAMGDGIKKASKSEQKNI
                     NIVRKSLVAKKDIQKGEIFSEENLTTKRPANGISAMRYEEFLGKIATKNYKEDELIRE
                     "
     gene            1425..2579
                     /gene="legG"
                     /locus_tag="ROE18_001176"
     CDS             1425..2579
                     /gene="legG"
                     /locus_tag="ROE18_001176"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HDX3651353.1"
                     /translation="MSKRKICIVSATRAEWYLLRNLCHEIQNDKDLSLQIIATGAHLS
                     PEFGLTYKEIEKEFKITKKIPILLANDDKISLCKSMSLAFSAFSDAFEDLKPDMVVIL
                     GDRYEMLSVASVCLLMHIPLVHLCGGELTLGAIDDSIRHSISKMSHLHFVSHEIYKKR
                     LLQLGEEEKRVFNIGSLASTIIKNMNFLNKKDLEKALEMKLDKELYLITYHPLTLNVK
                     NTQKEIKTLLKKLDTLKNASLIFTKANADENGLLINEILQNYCQKNSHKAKLFDNLGS
                     QKYLSLMKIAKAMIGNSSSGISESPFFKTPCINIGDRQKGRLRTQNIIDCEINDLDQA
                     FEKLESKEFKQNLKNFKNPYDNDKNPNKFIKTCLKNANLDTILHKNFIDL"
     gene            2588..3613
                     /locus_tag="ROE18_001177"
     CDS             2588..3613
                     /locus_tag="ROE18_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HDX3651354.1"
                     /translation="MDINKLKLTPDSSIEEALKIVGQERVRLGIIVDKKDKFLGVISD
                     SNIRKALISGKTLKDSIKDIYTKNPITIKENTSKEQLLKISAKTDIYDFPVLDEKGQI
                     LSIKSVSSLLKTNPNSIVIMAGGLGSRLKELTKDTPKPMLKVGKKPILESIIQRLKNQ
                     NFENFIFCVNYKKQIIEDYFQKGQKFGVKISYIKERKKLGTAGALSLIKQEFKESFIV
                     MNADILTELNFNDLLKAHKKSKALMSVCVREFEQQIPYGVITQKQGFIENIEEKPTQK
                     FLVSAGIYVLENEILNLIAKNEYLDMPELIKLALQKGKVNTYIINDYWIDIGRPDEFL
                     KANEDFK"
     gene            3610..4515
                     /gene="ptmF"
                     /locus_tag="ROE18_001178"
     CDS             3610..4515
                     /gene="ptmF"
                     /locus_tag="ROE18_001178"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine-D-fructose-6-phosphate isomerase
                     subunit"
                     /protein_id="HDX3651355.1"
                     /translation="MKVLIIGFGSIGKKHFLALKNLKYEVSLLSLSAKKEEFEKTQIY
                     RSLKECHLNEFDLFIIANITTEHFNTLKALNELVKDKIILVEKPLFEKSQNFTSSKNH
                     IYVAYLLRFHPVIVALKRLLKGEKIYFASLVCNSYLPHWRALDYRQNYSAKKELGGGV
                     LLDLSHEIDLAFFLFGNLELIYSQNAKISELDITSDDFAFLALKNSQKAKIHIELDYF
                     SKFNKREMTIHTLEKSFKADLINNKIEIYHKNQSQKILNFENDTIKTLQNLHQAVFEK
                     DKELCDLKQALKVLELCDEVRKKNG"
     gene            4508..5215
                     /gene="legF"
                     /locus_tag="ROE18_001179"
                     /gene_synonym="ptmB"
     CDS             4508..5215
                     /gene="legF"
                     /locus_tag="ROE18_001179"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HDX3651356.1"
                     /translation="MAEILCTICARGRSKGVKNKNIKKINELEMIAYSIIQAQNSKLF
                     KHIVISTDSDEIASVAQKYDAEVFFKREAHLANDRAAKLPVMRDALLRSEEHFKTRFE
                     TLIDLDASAPLRSSLDIKKAYESFVENDNSNLITAVPARRNPYFNLVEIQNNKVVKSK
                     EGNFTTRQSAPKCYDMNASIYIFKRDYLLENDSVFGKNTGLFVMDESTAFDVDSELDF
                     KIVEFLISLKNLSPKDF"
     gene            5215..5985
                     /gene="ptmA"
                     /locus_tag="ROE18_001180"
     CDS             5215..5985
                     /gene="ptmA"
                     /locus_tag="ROE18_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin modification protein PtmA"
                     /protein_id="HDX3651357.1"
                     /translation="MLENKIIFVAGACGRIGKVLCKKILLNKGTVILADINKERLNKL
                     QENLETNFKTKLLSLELDITKQESLQIALQKSQERYGKIDAFVNSSYPFGKDWGKTPY
                     YELKYEQICESLNLHLAGFMLAAQEFVKFFKQQGHGNIINLSSIMGVYAPKFENYEGT
                     SMQSSLEYSVIKAGINHMSSWLAKELFNQNIRVNTLASGGILDNQNELFLKAYRKCCA
                     SKGMLDADDVCGTLVFLLSDESRFITGQTLVVDDGWGL"
     gene            5985..>7678
                     /locus_tag="ROE18_001181"
     CDS             5985..>7678
                     /locus_tag="ROE18_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDX3651358.1"
                     /translation="MTFTPTQKELFNKNIEALSNILLKESLKEIKSSKFELILGKDNL
                     DINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNH
                     QHIIVFEKDIEIIWVMFHVLDFSNELQNSRLMILQTSSLDIEFFSNFCSSKPFFQFSR
                     IYFLELMSHYYERFHEDILGLNKKLAENFKNIILRNGNDPLDALQGIEQFVYNLPQMI
                     THPSYKELLSKRKGISDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHG
                     IKPDYVCMLERTEITAEFFNHDFGEFDKDIIFICAGVVHPKAIEYLKDRNLVITQKVL
                     AFPYYINLKDFSYAAVGFSVAHTLSYLATYLSHKNIIFIGQDLAYAENGNSHPDDYQN
                     SANYESQMYEHILTTAYGGNGKVETHSIWLLFKNWFENEMIPNTRKMGITTYNCTEGG
                     ARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRD
                     FSKILSNDFENIQSIYLSLNEKEEDINLAIEKIDKFKNKLEDIKQMQDLYEILQPLR"
BASE COUNT         2968 a         1118 c         1205 g         2387 t
ORIGIN      
        1 gactttttga tgaaaatatg gatatcatct ttgcaaatca aagtctttac tatataccct
       61 taaaagaact caaacaaaat attttagaat tttacgaact tttaaacacg ggtggaatac
      121 tttttgctac aatgatgagc aagaaaaatt attatttttc ccacagtcaa aaagaagaaa
      181 aaaatggctt gagtaaagtt gaaattaatg gaagattaaa tgaaacaagc tttatacatt
      241 ttattgataa agcccaagat ctagaaaatc tttttcaacc ttttgaaact ttatttttag
      301 gagattatga tcctattaat ttttataatt ttgaaggatc agcacaccat tatatttata
      361 taggtattaa aaaataaaat tttgccttta ttttaaggca aaataaaggc aaaataaagg
      421 caaaactatg aaaaaaactc ttatcatcgc agaagcagga gttaatcaca atggtgattt
      481 aaatttagct aaaaagttaa tagaaatcgc agcagattca ggcgctgatt ttgttaaatt
      541 tcaaagtttt aaagccaaaa actgtatcag cacaaaggct aaaaaagcac cctatcagct
      601 taaaaccaca gctagtgatg agagtcagct tcaaatggta caaaaactcg aactcgatat
      661 taaagctcat aaagagctta tcttacacgc aaaaaaatgc aatattgcct ttctttctac
      721 tccttttgat cttgaaagtg tagatctttt aaatgagtta ggcttaaaaa tctttaaaat
      781 tccaagcgga gaaatcacca atctacccta tcttaaaaaa attgcaaagc ttaataaaaa
      841 aatcatactt tcaacaggca tggcaaattt aggcgagata gaagaagctt taaatgtgct
      901 ttgcaaaaat ggcgctaaac gccaaaatat cactctttta cactgcacta cagaataccc
      961 tgcccctttt gatgaagtca atcttaaagc catgcaaagc ttaaaagatg cttttaaact
     1021 tgatgtgggt tattctgatc acactcaagg catacacatt tccctagctg cggttgcctt
     1081 aggagcttgt gtgatagaaa agcattttac cctagataaa aatatgtcag gacctgatca
     1141 taaagcaagt ctagaacctc atgaactaaa aacgctttgc actcaaatta gacaaataca
     1201 aaaggctatg ggtgatggca taaaaaaagc aagcaaaagc gaacaaaaaa atatcaacat
     1261 agtaagaaaa agtttagtgg ctaaaaaaga catccaaaaa ggagaaattt ttagcgaaga
     1321 aaatcttact accaaacgcc ccgcaaatgg tataagtgct atgagatatg aagagttttt
     1381 aggtaaaatt gctactaaaa actacaaaga agatgagctt atccgtgagt aaaagaaaaa
     1441 tttgtatagt cagtgcaaca agggctgaat ggtatctttt aagaaattta tgtcatgaaa
     1501 ttcaaaacga taaagatcta agccttcaaa tcatcgctac aggagcacat ttaagccctg
     1561 agtttggact cacttataaa gaaatagaaa aagaatttaa aatcactaag aaaattccta
     1621 tcctacttgc aaatgatgat aaaataagcc tttgcaaaag catgagttta gcttttagtg
     1681 cttttagcga tgcttttgaa gacttaaaac ctgatatggt ggtaatttta ggcgatcgtt
     1741 atgaaatgct tagcgtagca agtgtatgtc ttttgatgca cataccttta gtgcatttat
     1801 gtggcgggga gcttacttta ggggctattg atgatagtat aagacacagc atttcaaaaa
     1861 tgtcacattt acattttgta agtcatgaaa tttataaaaa aaggcttttg caacttggag
     1921 aagaagaaaa aagggttttt aatataggtt ctttagcttc tactatcata aaaaatatga
     1981 attttttaaa caaaaaagat ttagaaaaag ccttagaaat gaaactagat aaagaacttt
     2041 acttaatcac ttatcatcct ttaaccttaa atgtaaaaaa tactcaaaaa gagattaaaa
     2101 ccttacttaa aaaacttgac acccttaaaa acgcaagttt gatttttacc aaagcaaatg
     2161 ccgatgaaaa tggactttta atcaatgaaa ttttgcaaaa ttactgccaa aaaaactcac
     2221 acaaggctaa actttttgat aatcttggct cacaaaaata cctaagtctt atgaaaatag
     2281 ccaaagccat gataggcaat tcttcaagcg gtattagtga aagtcctttt tttaaaactc
     2341 cttgcattaa tataggcgat agacaaaaag ggcgtttaag aactcaaaat atcattgatt
     2401 gcgaaatcaa cgatcttgat caagcttttg aaaaattaga aagcaaagaa tttaaacaaa
     2461 atttaaaaaa ttttaaaaac ccttatgata atgataaaaa tcccaataaa ttcataaaaa
     2521 cttgcctaaa aaatgcaaat ttagatacaa ttttacataa aaatttcatc gatttataag
     2581 gcttagcgtg gatataaaca aactcaaact cacccctgat tcaagcatag aagaagcttt
     2641 aaaaatagtc gggcaagaac gcgttagact aggcattata gttgataaaa aggataaatt
     2701 tttaggagtc attagtgatt caaacatcag aaaagcttta attagtggca aaactttaaa
     2761 agatagtatc aaggatattt acactaaaaa tcccatcacc ataaaagaaa acacaagcaa
     2821 agaacagctt ttaaaaattt ctgctaaaac cgatatttat gattttcctg ttttagatga
     2881 aaaagggcaa attctttcca taaaatctgt ctcatcgctt ttaaaaacca atccaaactc
     2941 cattgtcatc atggctggag gcttaggatc tcgcttaaaa gagctgacta aagatactcc
     3001 aaaacctatg ttaaaagtag gcaaaaaacc cattttagaa agcataatcc aaagacttaa
     3061 aaatcaaaat tttgaaaatt ttatcttttg tgtgaattat aaaaaacaaa tcatagaaga
     3121 ttattttcaa aaagggcaaa aatttggggt taaaatttct tatattaaag agcgtaaaaa
     3181 actaggtaca gcaggggctt taagccttat aaaacaagaa tttaaagaaa gttttatcgt
     3241 tatgaatgca gacattttaa ccgagcttaa ttttaatgat cttttaaaag cgcataaaaa
     3301 atcaaaagct ttaatgagcg tttgcgtgcg tgagtttgag caacaaattc cttatggagt
     3361 gatcactcaa aaacaaggtt ttatagaaaa tatagaagaa aaacctaccc aaaaattcct
     3421 agtaagtgcg gggatttatg tacttgaaaa tgaaatttta aatttaattg ctaaaaatga
     3481 atacctagat atgccagaac tcatcaaact cgctctacaa aaaggtaagg taaataccta
     3541 tatcatcaat gattattgga ttgacattgg aaggccagat gagtttttaa aagccaatga
     3601 ggattttaaa tgaaagtctt aatcataggc tttggaagca taggaaaaaa gcatttttta
     3661 gccttaaaaa atttaaagta tgaagtaagt ttgctttctt taagtgctaa aaaagaagag
     3721 tttgaaaaaa ctcaaatcta tcgttcctta aaagaatgtc atttaaatga atttgatctt
     3781 tttatcatcg caaatatcac cacagagcat tttaacacct taaaagcttt aaatgagctt
     3841 gtaaaagata aaatcatact cgtagaaaaa cctttatttg aaaaaagcca aaatttcaca
     3901 agctcaaaaa atcacattta tgtagcatat ttactgcgtt ttcatcctgt gattgtagct
     3961 ttaaaaaggc ttttaaaagg tgaaaaaatt tattttgcta gtttggtttg taattcttat
     4021 ttgccccatt ggagggcttt agactacagg caaaattaca gcgctaaaaa agagctaggt
     4081 ggtggggttt tactcgatct ctctcatgaa atcgatctag ccttttttct ttttggaaac
     4141 ttagagctta tatactccca aaatgctaaa atttcagagc ttgacataac aagcgatgat
     4201 tttgcctttt tggctttaaa aaattcacaa aaagctaaaa ttcatataga attagactat
     4261 ttttctaaat tcaacaaaag agaaatgacc atccatactt tagaaaaaag ctttaaagcc
     4321 gatttaataa acaataaaat cgaaatttat cacaaaaatc aaagtcaaaa aatcttaaat
     4381 tttgaaaatg atacgataaa aacccttcaa aatttacatc aagcagtctt tgaaaaagac
     4441 aaagaacttt gcgatcttaa gcaagcttta aaagtacttg aactttgtga tgaagtaagg
     4501 aaaaaaaatg gctgaaattt tatgtaccat ttgtgctaga ggtagaagca aaggcgttaa
     4561 aaacaaaaat attaaaaaga ttaacgaact tgaaatgata gcttatagca tcatacaagc
     4621 tcaaaattca aagcttttta aacacatagt cataagtact gatagtgatg aaatcgcaag
     4681 tgtagcccaa aaatacgatg ctgaagtttt tttcaaaaga gaagctcatc ttgccaatga
     4741 tcgggctgca aaacttcctg tcatgcgtga tgccttgcta agaagtgaag agcattttaa
     4801 aacgcgtttt gaaactctca tagacttaga tgcttcagcc ccgcttcgct caagccttga
     4861 tataaaaaaa gcttatgaaa gttttgttga aaatgataat tccaatctca tcaccgcagt
     4921 tcctgctaga cgtaatcctt attttaacct cgtagaaata caaaataaca aggtagtaaa
     4981 atccaaagaa ggaaatttta ccactcgcca aagtgcccca aaatgctatg atatgaacgc
     5041 tagtatttat atctttaaaa gggattatct tttagaaaat gatagtgttt ttggcaaaaa
     5101 cacagggctt tttgtaatgg atgaaagcac agcttttgat gtagatagtg aacttgattt
     5161 taaaatcgta gagtttttaa tctctttaaa aaatttatcg ccaaaggatt tttaatgctt
     5221 gaaaataaaa tcatctttgt agcaggagct tgtggacgca taggcaaagt gctttgcaaa
     5281 aaaatacttc ttaataaagg cacggtcata cttgcagata tcaacaaaga acgcttaaat
     5341 aaattgcaag aaaatttaga aacaaatttt aaaacaaaac ttttaagctt agaacttgac
     5401 atcaccaaac aagaaagttt acaaattgcc cttcaaaaaa gtcaagaaag atacggcaaa
     5461 atcgatgctt ttgttaactc aagctatcct tttggcaaag attggggtaa aacgccttat
     5521 tatgaactca aatacgaaca aatttgtgaa agtttaaatt tacatttagc aggctttatg
     5581 ttggctgctc aagaatttgt gaaatttttt aaacaacaag gccatggtaa tatcatcaat
     5641 cttagctcca tcatgggagt ttatgcgcca aaatttgaaa actatgaagg cacttccatg
     5701 caaagctctt tagaatacag tgtgataaaa gcagggatta atcacatgag ctcttggcta
     5761 gctaaagagc tttttaatca aaacatacgc gttaataccc tagcaagtgg aggaattttg
     5821 gataatcaaa atgaactttt tttaaaagct tatagaaaat gttgtgcaag caagggtatg
     5881 ttagatgctg atgatgtgtg cggaaccttg gtatttttgc ttagtgatga gagtagattt
     5941 atcacagggc aaaccttagt agtagatgat ggatggggct tatgatgacc ttcaccccta
     6001 ctcaaaaaga actctttaac aaaaacattg aagctttaag caatattctt ttaaaagaaa
     6061 gtttaaaaga aattaaatca agtaaatttg aacttatctt aggtaaagat aatctagata
     6121 tcaatttaaa agatacaagt gataatactt ttctttatga aaatgttatt gatgaattaa
     6181 actctatgct aaatacttat aatgataaat atctacttta tcctgtatta tatttttatg
     6241 gttttggaaa tggaatttta tttaaagctt tattgcaaaa taaaaatcat caacatatta
     6301 ttgtttttga aaaagatata gaaatcattt gggtcatgtt tcatgtttta gatttttcaa
     6361 atgaattaca aaattcaaga ttgatgattt tgcaaacaag ttctttggat atagaatttt
     6421 tttctaattt ttgctctagc aaacctttct ttcaattttc tagaatttat tttttagaac
     6481 tgatgagtca ttattatgaa agatttcatg aagatatttt aggattgaat aaaaaattag
     6541 cagaaaattt taaaaatatc attttaagaa atggtaatga tcctcttgat gctcttcaag
     6601 gtatagagca atttgtttat aacttacctc aaatgatcac tcatcctagt tataaagaat
     6661 tactttctaa aagaaagggt ataagtgata cagctatcat tgtttctaca ggaccatctc
     6721 ttactaaaca acttcctttg ttaaaaaaat atgctaataa agctacaatt ttttgtgcgg
     6781 attcttctta tcctatttta gctaagcatg gtataaaacc tgattatgtt tgtatgctag
     6841 aaagaactga aattactgct gagtttttta atcatgattt tggggaattt gataaggata
     6901 ttatatttat ttgtgctggt gttgttcatc caaaggcgat tgagtattta aaggatagaa
     6961 atttagtcat aactcaaaaa gttcttgctt ttccatatta tataaatctt aaagattttt
     7021 cttatgctgc tgtaggattt agtgttgcac atacattatc ttatctagca acttatctaa
     7081 gtcataaaaa catcattttt ataggacagg atttagctta tgctgaaaat ggcaattctc
     7141 atcctgatga ttaccaaaac tcggctaatt atgaaagtca aatgtatgaa catattttaa
     7201 ctacagctta tggaggcaac ggaaaagtcg aaactcatag tatatggctt ttatttaaaa
     7261 attggtttga aaatgaaatg attccaaata ctagaaaaat gggtatcacc acctacaact
     7321 gcaccgaagg tggagcaagg atagaaggaa ccatagaaaa accttttcta tgggcttgtg
     7381 agaatttact tcataaagat ttaaataaac cttttgaaaa attagaacct ttaagtttaa
     7441 ataaacaaaa tgagttttta cttaaggctt attataaagt ttatcaaagt attaaacatt
     7501 gtagagattt tagtaaaata ctcagcaatg attttgaaaa tatacaaagt atatatttga
     7561 gtttaaatga aaaagaagag gatatcaatt tagctattga aaaaatagat aaatttaaaa
     7621 ataaacttga agatataaaa caaatgcaag atttatatga aattttacaa cctctgcg
//
LOCUS       DAPOLW010000078         7661 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.078, whole genome shotgun sequence.
ACCESSION   DAPOLW010000078 DAPOLW010000000
VERSION     DAPOLW010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7661
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.078"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..465)
                     /locus_tag="ROE18_001182"
     CDS             complement(<1..465)
                     /locus_tag="ROE18_001182"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651359.1"
                     /translation="MKKIVLLGASNSLVFNGLQLGLRQENITLYNLSLGGSSALSKIY
                     TLHKQENIKIIKEADLIIVETNIVDLYEVICQNMTIEQSYRNINWLFEELFFLNIKVV
                     DLLLFEQHFFNQHNKLANIIHSAHKQCCQKYGFNFISVHDFYINKNIHYFYLS"
     gene            complement(558..1223)
                     /locus_tag="ROE18_001183"
     CDS             complement(558..1223)
                     /locus_tag="ROE18_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HDX3651360.1"
                     /translation="MQAIILCGGLGTRLKSVIKDIPKPMAPINDKPFLEFIFEYLKKQ
                     GIKEVILAVSYKYEVIKEYFKDEFLGIKIKYGIEKEPLGTGGAIKEALKFIKNEVYVL
                     NGDTFFGIDLSKLKLNGSKICLALKQMNDFDRYGTVNVNEQGFVISFEEKIFKKQSLI
                     NGGIYLLTKDIFNEFDLEKKFSFEEFLQENCEKLKTRAEIFNDYFIDIGVPSDYERFK
                     NEQ"
     gene            complement(1211..1816)
                     /gene="gmhA2"
                     /locus_tag="ROE18_001184"
     CDS             complement(1211..1816)
                     /gene="gmhA2"
                     /locus_tag="ROE18_001184"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HDX3651361.1"
                     /translation="MENLNSYIKEHFTDSILAKEQILKDENLITLIKNASLEVIKAYK
                     NGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALSTDTSILTAISNDYGYEN
                     LFARQVQAQGVKGDVFIGISTSGNSKNILKALELCKQKEIISIGLSGANGGAMNELCD
                     YCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ"
     gene            complement(1804..2823)
                     /gene="hddA"
                     /locus_tag="ROE18_001185"
     CDS             complement(1804..2823)
                     /gene="hddA"
                     /locus_tag="ROE18_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 7-phosphate kinase"
                     /protein_id="HDX3651362.1"
                     /translation="MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCT
                     LIEREDAKIIFDSPDTNSYSEYESKEFLGDDGKLDIFKSIYNRIVKDFTKKPLSFSLH
                     TYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQD
                     QYAATFGGFNFMEFYDNKRVIVNPLRIKNWIASELEARTVLYFTNITREAKDIEEHKK
                     GKLGDEKSLEAMHAIKQDAIKMKEALFKADFDALAQILGKSWQSKKIISEIVSNDELE
                     RIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALSKEQGYVQDFSFTKEGV
                     KSWRI"
     gene            complement(2820..3851)
                     /locus_tag="ROE18_001186"
     CDS             complement(2820..3851)
                     /locus_tag="ROE18_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HDX3651363.1"
                     /translation="MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIY
                     HLSDRINKKDRIGIFYADLNDYSSLQKLFESQRPDVIFHLAAQSYPKTSFDIPIETLQ
                     TNIIGTANILENIRILKAKDGYDPVVHICSSSEVYGKAKVGIKLNEETAFHGASPYSI
                     SKIGADYLGRFYGEAYNIRTFVTRMGTHSGPRRSDVFFESTVAKQIALIEAGYQEPVV
                     KVGNLSSVRTFQDCRDAIRAYYLLSLESQKGNIPCGEAFNIAGEEAFKLPEVIDILLG
                     FSTRKDIKIEQDEERLRPIDADYQMFDNTKIKNYISWKPEIAARKMFEDLLNHWRDEI
                     KKGRIPLNR"
     gene            complement(3860..4900)
                     /locus_tag="ROE18_001187"
     CDS             complement(3860..4900)
                     /locus_tag="ROE18_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002923011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HDX3651364.1"
                     /translation="MLKDSKIYIAGHGGTLGKTLYNTLIDEGFNNIIVKTRKELDLVD
                     QKAVTDFFAKEKPEYVFLCAAKLDTLGLFTPADVIYENSVLQANIIHSSYQNNVKKLV
                     FYGSAWAYPQKAINPIKEENLLDGKLDLKAIAYGLPKIIGTKMCESYNLQYGTNFITL
                     YLANLYGETTEFDLQKAKVLPALLRKFHLAKLLDENKIDEVLKDLQMNSLEQAMEYLQ
                     KFGVSKDSVEIWGGGSVIREFIHAKDLADASIYVMKNIDFKDIVSSNEPHFNVGSGEF
                     LSIKELAFLIKNIVGFKGEIMFNNSKPDSTMDRMLDSSRLQNLGWKAKIKLEDGIKMM
                     YEWYLKEQNIRQ"
     gene            complement(4893..6080)
                     /locus_tag="ROE18_001188"
     CDS             complement(4893..6080)
                     /locus_tag="ROE18_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002898762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HDX3651365.1"
                     /translation="MQKDSKIYIAGHSGLVGSAILNELKQQGYKNLVFKTHFELDLTN
                     QKAAADFFEREKPEYVILAAAKAGGILANNTYRADFIYQNLMIECNVIHNAYLHKVKK
                     LLFIASTTVYPKNATLPTSEDQMLSGDLEYTNKPYAIAKISGLMLCESYNLQYNTNFI
                     AITPTNLYGNNDKFDLEKSHVLPGILRKMHLAKLLNEKRYEDLLNDLKFDSIEEAKNY
                     LKKFGVDENNVEIWGSGKPTREFLHSQDLANACLFIMNNIDFKDLKGGNTEIINTHLN
                     IGPHKNITIKELAELIKNIVGFKGNLVFNLNRPDGAMQKFTDCSKIHSLGWKHKIDLE
                     KGIQMMYEWYKNNQETQNNNNSSIRWGGGLNFEYFIFSNIQSFYTNNIYDFANSTKRV
                     CNA"
     gene            complement(6084..6710)
                     /locus_tag="ROE18_001189"
     CDS             complement(6084..6710)
                     /locus_tag="ROE18_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HDX3651366.1"
                     /translation="MSNIDAKALSLGVSDSSPWDLEMAQRGFEVIEYDASIEKCPYSH
                     ENIIFHKKFIGNTNNENTITLAQALKDNNLDESRPNILQCDIENCEWDMLENIDISIL
                     NKYFSQVIFEFHGCNPEEQDGVEKRISLLKKLNEYFIPIHTHLNNHGKIFYSKGLFFS
                     TTLEVSYLRRNELNLMQGLHYRKECGNLQNLDFPVWPSNPEIPLRFQG"
     gene            complement(6697..7014)
                     /locus_tag="ROE18_001190"
     CDS             complement(6697..7014)
                     /locus_tag="ROE18_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651367.1"
                     /translation="MEKLLQELNVNIKVGNQLSYQILMSNIISNLDIDKRDKEILFLL
                     LQDRDRNYIRINNNEQCYRNIVNYLNLIRPLELPLYNLLRIGGNGDGGYVMYNGGGVY
                     EQY"
     gene            complement(7017..7562)
                     /locus_tag="ROE18_001191"
     CDS             complement(7017..7562)
                     /locus_tag="ROE18_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HDX3651368.1"
                     /translation="MAIKFDIQESKILKGVYIITPNKFRDLRGEIWTAFTSKAVDKLL
                     PNGLKFIHDKFIHSKHNVIRGIHGDVKTYKLATCVYGEVHQVVVDCRKDSPTYLKHER
                     FIINQDNQQIILVPAGFGNAHYVSSESAVYYYKCAYLGEYMDAHDQFTYAWNDERIGI
                     DWPTNSPILSERDILATKNKG"
BASE COUNT         2487 a         1404 c          887 g         2883 t
ORIGIN      
        1 cgataaataa aaataatgga tatttttatt tatataaaag tcatgaacac ttataaaatt
       61 aaatccatat ttttgacaac attgtttgtg tgcagaatga ataatattgg cgagtttatt
      121 atgttgatta aaaaaatgtt gttcaaataa taataaatca actactttga tatttaaaaa
      181 aaataattcc tcaaataacc agttaatatt tctataagac tgctcaatag tcatattttg
      241 acagataact tcatataaat ctactatatt agtttccaca attattaaat cagcttcttt
      301 gattatttta atattttctt gcttatgtaa tgtatatatt ttcgataatg cagaacttcc
      361 acctaaagac aaattataca atgtgatatt ttcttgcctt aagccaagtt gcaaaccatt
      421 aaaaaccaac gaattgcttg cgcccaataa aacaattttt ttcataaata attccttaaa
      481 tattataatt tattttttaa tttttaaaat taatttagtt tatagaatta ttgccatcat
      541 caagcaaaac tacattttta ttgttcattt ttaaaccttt cgtaatcact aggcacacca
      601 atatctataa aataatcatt aaaaatttca gctctagtct ttaatttttc acaattttct
      661 tgtaaaaact cttcaaaaga aaattttttc tctaaatcaa attcattaaa aatatcttta
      721 gttaaaagat aaattccacc attgattaaa ctttgctttt taaatatttt ttcctcaaaa
      781 gaaatcacaa aaccttgctc attaacattt actgtgccat atctatcaaa atcattcatt
      841 tgttttaaag caaggcaaat tttacttcca tttagcttta atttgcttaa atctatgcca
      901 aaaaaagtat cgccatttaa aacataaact tcatttttta taaatttcaa agcctctttt
      961 atagctccac ccgttcctag aggctctttt tctataccgt attttatttt tatgcctaaa
     1021 aactcatctt taaaatactc ttttatcact tcatatttgt atgataccgc taagataact
     1081 tcttttatgc cttgcttttt aagatactca aaaataaatt ctaaaaaagg cttatcattt
     1141 atcggtgcca taggctttgg aatgtctttt ataacacttt taagccttgt tcctaagccg
     1201 ccacaaagta ttattgcttg caagaaaaac ctttgccgaa aagctcttct tcaacgatag
     1261 cacaaataat atgtcctatt aaaatatgcg cttcttgaat tcttggagtg caagttgaag
     1321 gcactttgat acaataatca caaagctcat tcatagcccc gccattagct ccgcttaagc
     1381 ctatgcttat gatttctttt tgcttgcaaa gctctaaagc ctttaaaata tttttactat
     1441 ttccacttgt agaaattcct ataaaaacat ctcccttaac tccttgagct tgcacttgtc
     1501 ttgcaaacaa attttcataa ccataatcat tgctaatagc agttaatata ctcgtgtccg
     1561 ttgaaagtgc aatacttgcg atccctggtc tatcaaaata aaatctactt acaaattccc
     1621 ctgcaatatg ctgtgcatct gctgcgctac caccatttcc tgcaagtaaa gttttgttac
     1681 catttttata agcttttatg acttctaatg aagcattctt aataagagtt attaaattct
     1741 catcttttaa aatttgctct tttgctaaaa tagaatctgt aaaatgttct tttatatagg
     1801 aatttaaatt ctccatgatt taaccccctc ttttgtaaat gaaaaatctt gcacataacc
     1861 ttgctctttg cttaaagctt tgattaagtt gtattttttt gtaggatcca caaagaaaaa
     1921 cataaatcca cctgctcctg ctccactagt tttgccacta taagctccat tatctatagc
     1981 tagtttataa attctttcaa gctcatcatt gctaacgatt tctgaaatga ttttttttga
     2041 ctgccaagac ttgcctaaaa tttgtgccaa agcatcaaaa tccgccttaa acaaagcttc
     2101 tttcatcttt atagcatctt gttttatagc gtgcatagct tcaagggatt tttcatctcc
     2161 gagctttcct tttttatgtt cttctatatc ttttgcttct cttgtaatat ttgtaaaata
     2221 aagcacagtt ctagcttcaa gctcactagc tatccagttt ttaatacgca aaggattaac
     2281 aatgactctt ttattatcat aaaattccat aaaattaaag ccaccaaaag ttgcggcgta
     2341 ttgatcttgt gctccgccta ctatgcctaa atcttctctt tctatctcat aagcaagctt
     2401 agcgatttca tattctccta aaggtagatt aagccattct gcaaaggctt ttataacccc
     2461 tacaaccaaa gttgagcttc cgcccaaacc actaccactt ggtacatctg agtatgtatg
     2521 caaagaaaaa cttaaaggtt tttttgtaaa atcttttaca atgcgattat aaatactttt
     2581 aaaaatatct aattttccat catctcctaa gaattcttta ctttcgtact cagagtaaga
     2641 atttgtatca ggagaatcaa aaatgatttt tgcatcttct ctttcgatca aagtacaatg
     2701 tatgtataaa gatatagtcg catttaaaac ataacctgtg tatttatcac aatataaatt
     2761 tatatcagtc cccccacctg ctaaaccaag gcggagagga gtttgcgtgc gtatggtttt
     2821 catctattta aaggaatcct tccttttttt atctcatctc tccaatgatt taacaaatcc
     2881 tcaaacattt ttctagctgc aatttctggc ttccagctga tatagttttt gattttagta
     2941 ttgtcaaaca tttgatagtc tgcatcaata ggacgtagtc tttcttcatc ttgttctatt
     3001 tttatatctt ttcttgtaga aaatcctaaa agtatatcta taacttcagg aagcttaaaa
     3061 gcctcttctc ctgctatatt aaaagcttct ccgcaaggaa tattaccctt ttgactctca
     3121 agagaaagta gataataagc ccttatagca tcacgacaat cttgaaaggt tcttacactc
     3181 gaaagatttc caaccttaac aacaggctct tgataacccg cttcaattaa agcaatttgt
     3241 tttgcaactg tactttcaaa aaacacatca gaacgtcttg gaccactgtg tgttcccatt
     3301 cttgtaacaa aggtgcgaat gttataagct tcaccataaa atcttcccaa ataatcagcg
     3361 ccgattttgc ttatactata aggacttgca ccgtgaaaag ctgtttcttc attaagttta
     3421 atccctactt ttgctttacc ataaacttca cttgaagagc agatatgcac tacagggtca
     3481 tatccatctt ttgcctttaa aattctaatg ttttccaaaa tatttgctgt gcctatgata
     3541 tttgtttgta atgtttctat aggtatgtca aaagaagttt ttgggtaaga ctgtgcggcc
     3601 aaatgaaaga tcacatccgg tctttgactc tcaaaaagtt tttgaagact agagtaatca
     3661 tttaaatctg cataaaaaat acctattcta tcttttttat tgatcctatc acttaagtga
     3721 tagatattgt ccataggttc ttgccaacgc atcataccta taacatcata atccgtattt
     3781 tctagcaaaa aatctgccat ttgcgagcca acttgccctg taaatcctgt gattaatgct
     3841 gtttttttca taactgttcc tattgtctta tattttgctc ttttaaatac cattcgtaca
     3901 tcattttaat gccgtcttca agcttgattt ttgccttcca gcctaaattt tgcaaccttg
     3961 aactatctaa cattctatcc attgtagaat ctggttttga attgttaaac ataatttcac
     4021 ccttaaatcc aacaatattt ttaatcaaaa aagcaagttc ttttatactt aaaaattccc
     4081 cacttcctac attaaaatgc ggttcattag atgaaacaat atctttaaaa tctatatttt
     4141 tcatcacata aatagaagca tcagctaaat cttttgcatg aataaattcc ctaattacac
     4201 taccgccacc ccaaatttct acgctatctt tacttacacc aaatttttgt aaatattcca
     4261 ttgcttgctc taaggaattc atttgcaaat cctttagaac ctcatcaatt ttattttcat
     4321 ctaaaagttt tgctaaatga aatttgcgaa gtaaagccgg taaaactttt gctttttgta
     4381 aatcaaactc ggttgtctct ccatacaggt ttgcaagata taaagtgata aaatttgttc
     4441 catattgtaa gttataactt tcgcacattt ttgttcctat aatttttggc aaaccatatg
     4501 caatggcttt taaatctagc tttccatcta ataaattctc ttctttaata ggatttatag
     4561 ctttttgagg gtaagcccaa gcagatccat aaaaaacaag ctttttaaca ttattttgat
     4621 aagatgaatg aataatattt gcttgaagta cgctattttc ataaattaca tcggctggag
     4681 taaaaagccc taaggtatca agcttggcag cacataaaaa aacatattct ggtttttctt
     4741 ttgcgaaaaa atcagtcaca gctttttgat ctactaaatc taattctttt cttgttttta
     4801 cgataatatt attaaaaccc tcatctataa gtgtattata aagagttttt cctaaagtgc
     4861 caccatgccc tgctatataa attttagaat ctttaagcat tgcaaaccct ttttgtagaa
     4921 tttgcaaaat cataaatatt atttgtataa aaagattgaa tgtttgaaaa gataaagtat
     4981 tcaaagttta atcccccccc ccatctaatc gagctgttat tattattctg agtttcttga
     5041 ttatttttat accattcata catcatttga attccttttt ctaaatcaat tttatgtttc
     5101 caacctaaag aatgaatttt tgagcaatct gtaaatttct gcattgcacc atctgggcga
     5161 tttaaattaa aaactaaatt tcccttaaat cctactatat ttttgattaa ttctgctaat
     5221 tctttaatag tgatattctt atgtgggcct atatttaaat gagtgttgat aatctcagta
     5281 ttaccacctt ttaaatcttt aaaatctata ttattcatga taaataaaca agcatttgct
     5341 aaatcttgac tatgtaaaaa ttctcttgtc ggttttccac taccccaaat ttcaacatta
     5401 ttctcatcta caccaaattt ttttaaataa ttcttagctt cttcaatgga atcaaatttt
     5461 aaatcattta ataagtcctc atatcgtttt tcatttaaaa gcttcgctaa atgcattttt
     5521 cttaaaattc caggcaatac atgagatttt tcaagatcaa atttatcgtt attgccatat
     5581 aaatttgtag gagtgattgc tataaaattt gtattgtatt gcaaattata actttcacaa
     5641 agcatcaagc ctgaaatttt agcaattgcg taaggtttgt tagtatactc aagatctcca
     5701 cttaacattt gatcttcact agttggtaat gttgcatttt taggataaac tgtagttgaa
     5761 gctatgaaaa gtagcttttt tactttatgc aaataagcat tatgaataac attgcactct
     5821 atcattaaat tttgataaat aaaatcagca cgataagtat tattagctag aattccaccc
     5881 gctttagctg ctgctaaaat aacatattct ggcttttctc tctcaaaaaa atcagccgca
     5941 gccttttggt ttgttaaatc gagctcaaag tgagttttaa aaacaagatt tttataacct
     6001 tgttgcttaa gttcattaag tatagcactg cccacaagac cactatgacc cgctatgtaa
     6061 attttagaat ctttttgcat catttatcct tgaaatctta atggaatttc aggattagat
     6121 ggccaaactg gaaaatctaa attttgcaaa tttccgcatt cttttctgta atgtaaaccc
     6181 tgcattaaat ttaactcatt tcttcttaga taacttactt ctaaggtagt gctaaaaaat
     6241 aatcccttag aataaaaaat ctttccgtga ttatttaaat gtgtatgtat tggaataaaa
     6301 tattcattaa gtttttttag taaacttatt cttttttcaa ccccatcttg ctcttcagga
     6361 ttacacccat gaaattcgaa tataacttgt gaaaaatatt tatttaaaat acttatatca
     6421 atattttcaa gcatatccca ttcacaattt tcaatatcac attgcaaaat atttggccta
     6481 ctctcatcta aattattatc ttttaaagct tgtgctaaag taattgtatt ttcgttattt
     6541 gtattgccta taaatttttt atgaaaaata atattttcat gactataagg acatttttct
     6601 atgctagcat catattcaat tacctcaaat cctctttgag ccatttccaa atcccaaggg
     6661 gaactgtctg aaacacctaa agaaagagct tttgcatcaa tattgctcat acaccccccc
     6721 cccattatac attacataac caccatctcc attaccacca attcttagta aattatacaa
     6781 aggcagttcc aaaggtcgaa taagatttaa ataatttaca atattcctat aacactgctc
     6841 attgttattt atgcgaatat aatttctatc tctatcttgt aataatagga ataaaatttc
     6901 cttatctctt ttatcaatat ctaaatttga aataatattt gacattaaaa tttgataaga
     6961 caattgattg ccaactttaa tattaacatt taactcttgt aataattttt ccatatttat
     7021 cctttatttt tagttgctaa aatatcacgt tctgaaagaa taggagaatt tgttggccaa
     7081 tctataccaa ttctttcatc attccatgca taagtaaatt gatcatgtgc atccatatat
     7141 tctcctaaat aagcacattt atagtaatac actgcacttt cactgctaac ataatgagca
     7201 tttccaaaac ctgctggaac taaaatgatt tgctgattat cttgatttat gatgaatctt
     7261 tcatgcttca aataagttgg tgaatctttt ctgcaatcaa ccacaacttg atgcacttct
     7321 ccataaacac aagtggcaag cttataagtt tttacatcgc catggatacc gcggataaca
     7381 ttatgtttag aatgtatgaa tttatcgtgt ataaatttta atccatttgg taaaagctta
     7441 tctacagcct tgcttgtaaa agctgtccaa atttcacccc ttaaatctct aaatttgtta
     7501 ggagttataa tatacactcc ttttaaaatt tttgattctt gtatatcaaa ttttattgcc
     7561 attatttgcc ttttttattt ttatattctt ttttaagttt atataaatca aaccaaaatt
     7621 taatatatcc acctttatac caattcctac ttgcttgtat a
//
LOCUS       DAPOLW010000079         7511 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.079, whole genome shotgun sequence.
ACCESSION   DAPOLW010000079 DAPOLW010000000
VERSION     DAPOLW010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7511
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.079"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..2062
                     /locus_tag="ROE18_001192"
     CDS             <1..2062
                     /locus_tag="ROE18_001192"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651369.1"
                     /translation="PELISIKKEVKDLANEAKLVVSKASEIIKNKINTIFFENQRLNQ
                     EMIDSVKKLEEIKFDIGVKYKEIASAYELLLESKQNIEDLREVIALYKEFENDITSYS
                     QIIKDFKSKIENLERDLKSQSESIYSSLNDKQNEILKKLNEVKNETLVKFDELTAKCE
                     GYKIHFEQSYDRFNQRALIANEDLGRLAEVAKKELGNDKLIYETELKVLAEETIKQME
                     EMLKGLSDERNEVTEVFETQKKEFTTLVDTSKVMIDNLNHIFNANYQAKKNEFSIIFN
                     EKLHSLNENKQDFLNELVSAKENGLNKINETKEQSLNEIIQTKEQGLNELETKKGECI
                     DEIDNQARIYDISGVKANVEYLLSLLNEKDDGKDDGIKDEIANIEQGIKDKEQELEEI
                     KKQIEEALNNNDELKQKNDELKEIKNQIYEALSQEPPADTSELEERKEELENQIAELE
                     KEIAGELINKKEEIEKELEEANQNLEDKNNELEQNEKDKKLITQKVLDITIKTLEALI
                     DIKVSLNGDEEINGNKTFANPILVKVDPTNDNHLTNKIYVDTALNTKANLNGDNIFNG
                     ANTFNQALTSRADPTNDNHLTRKWYVDYGGGIKNLGTTGSINLDLRQAQHFILTANAG
                     TSIGIANFGGVGKSGTITINNCQNVVAFNAPFKFRIAQSGFSGTETFAYFCIASNNVR
                     LVRT"
     gene            2064..2513
                     /locus_tag="ROE18_001193"
     CDS             2064..2513
                     /locus_tag="ROE18_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651370.1"
                     /translation="MNCLLLSNNGIALNLPPSLGGSVANYNYMLKLDMIYKQAVVLPS
                     NINNKEVVMLGEVWTTGNMSNKTSGNTLEITWNNFNSKVTLHALSKYYTANAKIKVEK
                     KFNFGNINNLQIMLSSYQSGSANASAGWNLNDGNRLNPRANLTLYWN"
     gene            2526..3161
                     /locus_tag="ROE18_001194"
     CDS             2526..3161
                     /locus_tag="ROE18_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HDX3651371.1"
                     /translation="MFYDLKNKSLKYDDIFLKDVKIQNEEGEIDAQDTYFLSACDDKL
                     LKELGFAKVKEEEIPSFNEKIEELRQIQTYDEENNLYIISYKIKEKALEELKELKLEE
                     LKAIKEEKLLFMPFKNTIFQIDTEAKINISGKVSEIMLANLNNTPLENIAWIDKDNKI
                     TTFNKEEFLEFGVGIAKYTESIIFKNDELRNKVKNATSLEELNLIAWESEK"
     gene            3158..3541
                     /locus_tag="ROE18_001195"
     CDS             3158..3541
                     /locus_tag="ROE18_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651372.1"
                     /translation="MSTENIIKEGAILGSLSGSALLGLMVFVLAGIAWHLYKTLHKEA
                     GERTKELISETKNTNVLIREQIAVSRVSSDSLVKFIETHCSKTNDKLEAIETDLMRMD
                     ERLVKLTQIRNDELRSIFKKKENND"
     gene            3534..3908
                     /locus_tag="ROE18_001196"
     CDS             3534..3908
                     /locus_tag="ROE18_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1353 domain-containing protein"
                     /protein_id="HDX3651373.1"
                     /translation="MTKTELKRVCVKPYDKDRFEVIQDYEFILPNYKGIVPQGFKTDG
                     ASIPRIFWSIYPPFKSEYFSACVVHDYLCINAKSRDDYRLADLVLKEAMQALEINKFK
                     IFVFYCSCNLFHQIKCLIKGIR"
     gene            3905..5185
                     /locus_tag="ROE18_001197"
     CDS             3905..5185
                     /locus_tag="ROE18_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651374.1"
                     /translation="MSLEQVINTQNESLNQIISSLQELVLSYKNGNLSLEDVKKLINE
                     TIENISNDYIKESELKEKLEALLEELGINANINEESLKEVVLKVVLENQESLKGDKGD
                     PFTYEDFTEEQLENLKGQDGAKGADGKNAYELWLENEENTGKSQDEFLESLKAQTPTK
                     EEIKPIIEETLEDMKLNLGINGIKVSNSIPTPKTKANVNDLIITYNENVKQLWLCVAS
                     DDKYTSWINLLGNENITAQELIIISFDTNLNSGQYGGCLSDLRFGFENSLASTTQIIK
                     GLNEGSFLITKDGMGLKSKNYTEVSVLSKPSKNQIEGNIKTSGIYNDPAWHNITNALK
                     KYDGNANECCLWASNIKNSVSIELFTNEIPMSLFYRQAGYYGNVNLSNIKMQKALRVQ
                     NEIIVERSFIGIKKEIDKTTYGDNAFLFEFEEEK"
     gene            5234..5692
                     /locus_tag="ROE18_001198"
     CDS             5234..5692
                     /locus_tag="ROE18_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651375.1"
                     /translation="MKVTINRRYTGKTCVIGKFKVLDDEEKILFECFSLEEDKEGLES
                     GKDLRIPEGNYNLKRHSPSRFENTLRSITKKDDTMINVYNDEVPSSRAILIHWGNTDK
                     DTQGCILLGLTKDNNNESVGQSRQACKEFYDLVYGKNLEDIKLEITNELA"
     gene            5754..6173
                     /locus_tag="ROE18_001199"
     CDS             5754..6173
                     /locus_tag="ROE18_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004306038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651376.1"
                     /translation="MINLLFGNAKLYIALALMTILAGYFYLRLDSTKAKLEKSQSDLA
                     LALKINENNQEKLKELNQIHKTELKALNEANNQKNQVQERVQYVKEYIYKSNENNITK
                     LFNDVVDRLWDANSTSSNQNRNSKSKNSARTTNIKPP"
     gene            6091..6288
                     /locus_tag="ROE18_001200"
     CDS             6091..6288
                     /locus_tag="ROE18_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651377.1"
                     /translation="MQTQQVVTKIEIQKVRIPQELLTLSPLEKPKAKNELDILNAYSM
                     LFYKYKQCEIQISKIKELNNE"
     gene            6281..6772
                     /locus_tag="ROE18_001201"
     CDS             6281..6772
                     /locus_tag="ROE18_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002792600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651378.1"
                     /translation="MSNTNVDYNKRLEAFKEIYPQILEMSLAEKSPFGEFKKLLEQFG
                     NDNVIRNDQQFQSLAQALVSVGQTIVAQSQNTALSMILQGDENELNAEKALLLRAQTE
                     TEKAKPALIARQTSQIDDNLRIEAAKVTQSVQFGYCTGGLDIPQEIMKLVKEKIENIE
                     KSS"
     gene            6772..>7511
                     /locus_tag="ROE18_001202"
     CDS             6772..>7511
                     /locus_tag="ROE18_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651379.1"
                     /translation="MLIDEKRLMRNYTLKPAYPSNIGELDTQEVYKQWFTYAMIGVNK
                     YVELLHKQLVRKGRSQIQNINHPLFKNSYIVKKYNIKSSSTAPYNKENYNDLGLNQFF
                     VGQDPYKPYQGDPSSENGIYHDICEIRTNYNLGSMQYYYGFPNNLALLFEKEKAWKYN
                     GKGFFYIDEKINFKDILNKALENINYEMLINDIEVVIFSQTIQKNNEWIYPSIDDIKI
                     PEIKVENVEFKPTFGKPYKKLCIDVEKF"
BASE COUNT         3239 a          794 c         1276 g         2202 t
ORIGIN      
        1 acctgaatta ataagtatta aaaaagaagt aaaagattta gcaaatgaag caaaattagt
       61 agtaagtaaa gcaagcgaaa ttataaaaaa taaaattaac actatattct ttgaaaacca
      121 aagattaaat caagaaatga tagatagtgt taaaaagcta gaagaaatta aatttgatat
      181 tggagttaaa tataaagaaa tagctagtgc atatgaacta cttttagaaa gcaagcaaaa
      241 tatagaagat ttaagagaag ttatagcttt atataaagaa tttgaaaatg atataacatc
      301 ttattcccaa attataaaag attttaaaag taaaatagaa aatttagaac gagatttaaa
      361 atcacagtct gaaagtatct actcttcttt aaatgataaa caaaatgaaa tattaaaaaa
      421 attaaatgaa gtaaaaaatg aaactttagt taaatttgat gaacttacag caaaatgtga
      481 agggtataaa atacattttg agcaaagtta tgataggttt aatcaaagag ctttgatagc
      541 taatgaagat ttaggtaggt tagctgaagt tgctaaaaaa gaactaggta atgataagtt
      601 aatttatgaa acagaattaa aagttttagc tgaagaaaca ataaaacaaa tggaagaaat
      661 gctcaaaggt ttaagtgatg aaagaaatga agtcacagag gtttttgaaa ctcaaaagaa
      721 agaatttact actcttgtag atacttctaa agttatgatt gacaacttaa atcatatttt
      781 taatgcgaat tatcaagcaa agaaaaatga gtttagtatt atttttaatg aaaaattaca
      841 tagtttaaac gagaataagc aagatttttt aaatgagctt gtgagcgcaa aagaaaacgg
      901 actcaataaa ataaatgaaa caaaagagca aagccttaat gaaataatcc aaacaaaaga
      961 acaaggactt aatgagcttg aaactaaaaa aggtgagtgc atagatgaga ttgacaatca
     1021 agcaagaatc tatgatataa gtggtgttaa ggctaatgtt gaatatcttc tttctttgct
     1081 taatgagaag gatgatggta aagatgatgg aattaaagat gaaattgcaa atatagagca
     1141 aggtataaaa gataaagaac aagagcttga agagataaaa aagcaaattg aagaagcttt
     1201 aaataataat gatgaattaa agcaaaaaaa tgatgaatta aaggaaatta aaaatcaaat
     1261 ctatgaggct ttaagtcaag aaccacctgc tgatacaagc gaacttgaag agagaaaaga
     1321 agaacttgaa aatcaaattg ctgagcttga aaaagagatt gctggtgaat taattaacaa
     1381 aaaagaggaa attgaaaaag aacttgaaga agctaatcaa aacttagagg acaaaaacaa
     1441 tgagttagag caaaatgaaa aagataaaaa gctaattaca caaaaagtat tagatataac
     1501 tattaaaact ttagaagcac ttatagatat aaaagtaagt ttaaatggcg atgaagagat
     1561 aaatggaaat aaaacttttg ctaatcctat tttagtaaaa gtagatccaa ctaatgataa
     1621 ccatttaaca aataaaatct atgtagatac cgctttaaat acaaaagcaa atttaaatgg
     1681 agataatata tttaatggcg caaatacttt taatcaggca ttaacttctc gggccgatcc
     1741 aacaaatgat aatcacttaa ctagaaaatg gtatgtagat tatggtggtg gaattaaaaa
     1801 tcttggcaca actggcagta taaatctaga tttaagacaa gctcaacatt ttattttaac
     1861 agcaaatgca ggaacaagca taggaatagc taattttgga ggagtaggaa aaagcggaac
     1921 aataactata aataattgtc aaaatgtagt agcttttaat gcccctttta aatttagaat
     1981 agctcaaagt ggatttagtg gcactgaaac ttttgcttat ttttgcatag cttcgaataa
     2041 tgtaagatta gtaaggactt aaaatgaact gcctccttct ttctaataat ggcatagcac
     2101 taaatttacc tccatcttta ggaggctcgg ttgcaaatta taattatatg ttaaagctag
     2161 acatgattta taaacaagca gtggtattgc catcaaatat taataataaa gaagtggtta
     2221 tgttaggcga agtttggacg actggaaata tgtctaataa aacttctgga aatactttag
     2281 aaataacttg gaataatttt aattcaaaag taacactaca tgctttaagt aaatattaca
     2341 ctgccaatgc aaaaatcaaa gtagagaaaa aattcaattt tggaaatata aataacttac
     2401 aaataatgct aagttcttat caaagtggta gtgcaaatgc aagtgctggt tggaacttaa
     2461 atgatgggaa tagattaaac ccaagagcaa atttaacatt atactggaat taagaaagga
     2521 taaatatgtt ttatgattta aaaaataaaa gtttaaaata tgatgatatt tttttaaaag
     2581 atgtaaaaat acaaaacgaa gaaggtgaaa ttgatgcaca agatacttat tttttaagtg
     2641 cttgcgatga taagctttta aaagagcttg gttttgctaa agttaaagaa gaagaaatcc
     2701 caagttttaa tgaaaaaatt gaagaacttc gccaaattca aacttatgat gaagaaaata
     2761 atctttatat tatttcttat aagattaaag aaaaagcatt agaagagtta aaagaattaa
     2821 aattagaaga actaaaagct ataaaagaag aaaagctttt gtttatgcct tttaaaaata
     2881 ctatatttca aattgacacg gaagcaaaaa ttaatattag cggaaaagtt agcgagataa
     2941 tgttagcaaa tctcaataat actcctttgg aaaatattgc ttggattgat aaagataata
     3001 aaatcactac atttaacaaa gaagaatttt tggaatttgg ggttggtatc gctaaatata
     3061 ctgaaagtat tatttttaaa aatgatgaac taagaaataa agtgaaaaat gcgacatctt
     3121 tagaagaatt aaatttaatt gcatgggaga gtgaaaaatg agtactgaaa atataataaa
     3181 agaaggtgct atactcggtt ctttaagtgg atctgcatta ttaggattga tggtttttgt
     3241 cttagctggg attgcatggc atttatataa aactttacat aaagaagctg gggaaagaac
     3301 aaaagaactt ataagtgaaa ccaaaaatac taatgttctt attagagaac aaattgcagt
     3361 atccagagta agtagcgata gtttggttaa atttatagaa acacattgct caaaaaccaa
     3421 tgacaagcta gaagctatag aaacagatct tatgagaatg gatgaaaggc ttgttaagct
     3481 tactcaaata agaaatgatg aattaagaag tatttttaaa aaaaaggaaa acaatgacta
     3541 aaacagaatt aaaaagggtt tgtgtaaagc catacgataa ggacaggttt gaagtgatac
     3601 aagattatga gtttatttta ccaaattaca aaggcattgt accacaaggt tttaaaactg
     3661 atggagcgag tattccacgt attttttgga gtatttatcc accttttaaa agtgagtatt
     3721 ttagcgcttg tgttgtccat gactatttgt gtataaatgc aaaatcaaga gatgattata
     3781 ggctagctga tcttgtttta aaagaagcaa tgcaagcttt agaaataaat aaatttaaga
     3841 tttttgtttt ttattgctct tgtaatttat ttcatcagat caaatgttta ataaagggga
     3901 taagatgagt ttagaacagg ttataaatac tcaaaatgaa agtttaaatc aaattataag
     3961 tagtttacaa gaattagttt taagttataa aaatggtaat ttgagtttag aagatgttaa
     4021 aaaattaatt aacgaaacta ttgaaaatat atcaaatgat tatataaaag aaagcgagct
     4081 aaaagaaaaa ctagaagcct tgctagaaga gcttggcatc aatgcaaata tcaatgaaga
     4141 gagtttaaaa gaagttgtat taaaagttgt tttagaaaat caagaaagtt taaaaggtga
     4201 taaaggagat ccttttactt atgaagattt tacagaagaa cagcttgaaa atttaaaagg
     4261 gcaagatgga gctaaaggag ctgatggtaa aaatgcttat gaactttggc ttgaaaatga
     4321 agaaaacacg ggaaaaagtc aagatgaatt tttagaaagt ttaaaggctc aaacaccaac
     4381 aaaagaagaa attaaaccta ttatagaaga gacgctcgaa gatatgaaat taaatttagg
     4441 cattaatgga ataaaagtat ctaattctat tcccactcca aaaacaaaag ctaatgttaa
     4501 tgatttaatt ataacttata atgaaaatgt aaaacaactt tggctttgtg tggcaagtga
     4561 tgataaatac acaagttgga ttaatttgct tggaaatgaa aatattacag cacaagagtt
     4621 gattattatt agttttgata caaatttaaa tagtggtcaa tatggcggat gtttaagtga
     4681 tttgcgtttt ggttttgaaa attctttagc aagcactacg caaattataa aaggacttaa
     4741 tgaaggcagt tttttaatca ctaaagatgg aatgggttta aaatctaaaa attatactga
     4801 agttagcgtt ctttcaaaac caagtaaaaa tcaaatagaa ggaaatatta aaacgagcgg
     4861 aatttataat gatcctgctt ggcataatat taccaatgct ttaaaaaaat atgatggcaa
     4921 tgcaaatgaa tgctgtcttt gggcttctaa tataaaaaat agtgtaagta tagagctttt
     4981 tacaaatgaa attcctatga gtctttttta taggcaagct ggatattatg gaaatgtcaa
     5041 tctttcaaat ataaaaatgc aaaaagccct tagagttcaa aatgaaatta tagtcgagag
     5101 aagctttata ggaataaaaa aagaaattga taaaactacc tatggtgata atgctttttt
     5161 atttgaattt gaagaagaaa aatgagttta aatctaaaaa taaaatacaa aaaataaaaa
     5221 gaaaggaatt ataatgaaag taacaattaa tagaagatac acaggtaaaa cttgtgttat
     5281 tggtaaattt aaggttttag atgatgaaga aaaaattctt tttgaatgtt tttctttgga
     5341 agaagacaaa gaaggtttag aaagtggcaa agatttaaga atacctgaag gaaattataa
     5401 tttaaaaaga catagtcctt cacgatttga aaatacttta agaagtatta caaaaaaaga
     5461 tgatacaatg ataaatgttt ataatgatga agttccttca agtcgtgcaa ttttaataca
     5521 ctggggaaac actgacaaag acacacaagg ttgtatcttg ctggggctta ctaaagataa
     5581 taataatgaa agtgtcggtc aaagcagaca agcttgtaaa gaattttatg atttggtgta
     5641 tggtaaaaat cttgaagaca ttaaattaga aataacaaat gagttagcat gaaaggagat
     5701 aaagtttaag taggttaaag tttacacccc acacttaaac ttctaaacaa aatatgataa
     5761 atcttttatt tggaaatgca aagctttata tagccttagc tttaatgaca attttagcag
     5821 ggtattttta tctaagactt gatagcacaa aggccaaatt agaaaaaagt caaagtgatt
     5881 tagctttggc tttaaaaata aatgaaaata atcaagaaaa attaaaagaa ttaaatcaaa
     5941 ttcataaaac agaattaaag gctttaaatg aagcaaacaa tcaaaaaaat caagtacaag
     6001 aaagggtgca atatgttaaa gaatacattt ataaaagcaa tgaaaataat attaccaagc
     6061 tttttaacga tgtcgttgat aggttgtggg atgcaaactc aacaagtagt aaccaaaata
     6121 gaaattcaaa aagtaagaat tccgcaagaa ctactaacat taagccccct tgaaaagcca
     6181 aaggcaaaaa atgaactaga tattttaaat gcttattcta tgctttttta caaatacaaa
     6241 cagtgtgaaa tccagataag caaaataaag gagctaaata atgagtaata caaatgttga
     6301 ttacaacaaa agacttgaag catttaaaga aatttatccg caaattttag aaatgagttt
     6361 agcagaaaaa tctccatttg gagaatttaa aaagctttta gaacaatttg gaaacgataa
     6421 tgttataaga aatgaccaac aatttcaaag cttggcacaa gcgttggtaa gtgttggaca
     6481 aaccatagtg gctcaaagtc aaaatacagc tttatccatg attttacaag gcgatgaaaa
     6541 cgagcttaac gctgaaaaag ctttactttt aagagctcaa acagaaacag aaaaagcaaa
     6601 acctgcatta atagctagac aaacttcaca gatagatgat aatttaagaa tagaagctgc
     6661 aaaagttaca cagagtgttc aatttggata ttgtaccggt ggtcttgata taccacaaga
     6721 aattatgaag cttgttaaag aaaagataga aaatatagaa aagtcttcat aatgcttata
     6781 gatgaaaaaa ggcttatgag aaattatact cttaagcctg cttatccatc aaacatagga
     6841 gaattggata cacaagaagt atataaacaa tggtttacct atgctatgat aggtgtaaat
     6901 aaatatgttg agcttttaca taaacaactt gtaagaaaag gtagaagtca aattcaaaat
     6961 ataaaccatc cgctatttaa aaattcgtat atagtgaaaa aatataacat taaaagttct
     7021 agcactgcac cttataataa ggaaaactat aatgatttag gacttaacca atttttcgta
     7081 gggcaagatc catacaaacc ttatcaggga gatcctagta gtgaaaatgg aatatatcat
     7141 gatatttgcg aaataagaac taattataat ttaggaagta tgcagtatta ttatggtttt
     7201 ccaaataatt tagctctttt atttgaaaaa gaaaaagctt ggaaatataa tggaaaagga
     7261 tttttttata ttgatgaaaa aataaatttc aaagatatat taaataaggc attggaaaat
     7321 ataaattatg aaatgcttat aaatgatata gaagtagtta ttttttctca aaccatccaa
     7381 aaaaataatg aatggatata tcctagtatt gatgatatta aaataccaga aattaaagta
     7441 gaaaatgttg aatttaaacc aacttttgga aaaccttata aaaaattatg cattgatgtt
     7501 gaaaaatttt a
//
LOCUS       DAPOLW010000080         7243 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.080, whole genome shotgun sequence.
ACCESSION   DAPOLW010000080 DAPOLW010000000
VERSION     DAPOLW010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7243)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7243)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7243
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.080"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..684)
                     /locus_tag="ROE18_001203"
     CDS             complement(<1..684)
                     /locus_tag="ROE18_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HDX3651380.1"
                     /translation="MKNYGLSNLNSFLLALAIYISIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKPTEQIDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSAKSGISSAPKPQASELVKQLNDSLLQEESSTQGESTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLE"
     gene            complement(687..1076)
                     /locus_tag="ROE18_001204"
     CDS             complement(687..1076)
                     /locus_tag="ROE18_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HDX3651381.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSTPTVKSLIISINAKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADK
                     SLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            complement(1085..1639)
                     /locus_tag="ROE18_001205"
     CDS             complement(1085..1639)
                     /locus_tag="ROE18_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HDX3651382.1"
                     /translation="MNFEAIFHFFNSSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLETLLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            complement(1639..2028)
                     /locus_tag="ROE18_001206"
     CDS             complement(1639..2028)
                     /locus_tag="ROE18_001206"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HDX3651383.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHAALVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQA
                     KDLIKSMSSDNAALAATFSKLDNARMH"
     gene            complement(2032..3429)
                     /gene="atpD"
                     /locus_tag="ROE18_001207"
     CDS             complement(2032..3429)
                     /gene="atpD"
                     /locus_tag="ROE18_001207"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HDX3651384.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDERE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            complement(3455..4339)
                     /locus_tag="ROE18_001208"
     CDS             complement(3455..4339)
                     /locus_tag="ROE18_001208"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HDX3651385.1"
                     /translation="MSNLKEIKRKIKSVHNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISFQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKTVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLKDLMKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            complement(4348..5853)
                     /gene="atpA"
                     /locus_tag="ROE18_001209"
     CDS             complement(4348..5853)
                     /gene="atpA"
                     /locus_tag="ROE18_001209"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HDX3651386.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFENGDKGMALNLEESSVGIVILGKGEGLKEGASVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINANEYRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQRGQGVICIYVAIGQKQSTVAQVVKRLEEHGAM
                     EYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIKEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            complement(5867..6388)
                     /locus_tag="ROE18_001210"
     CDS             complement(5867..6388)
                     /locus_tag="ROE18_001210"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HDX3651387.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSAFVLPKFKNIIES
                     NEIKKERKMEFLDSFFDIKNSSFQNFLRLLIENSRLECIPQIVKELERQKAFKENIFV
                     GIVYSKEKLSQENLKDLEVKLNKKFDANIKLNNKISQDDSVKIELEELGYELSFSMKA
                     LQNKLNEYILKII"
     gene            complement(6391..6903)
                     /locus_tag="ROE18_001211"
     CDS             complement(6391..6903)
                     /locus_tag="ROE18_001211"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HDX3651388.1"
                     /translation="MSKLFFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVAILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVQNIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            complement(6914..>7243)
                     /locus_tag="ROE18_001212"
     CDS             complement(6914..>7243)
                     /locus_tag="ROE18_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HDX3651389.1"
                     /translation="LKFMDERNDSIKNDENKVKENSQEVLGVNDELEAIHINTREEIQ
                     KIKQSAIAAAKEEAEQILRSKKEELERKMASFYADLAVQKKELQEHLNIHLSELKQAL
                     QNNIKKI"
BASE COUNT         2319 a         1359 c          892 g         2673 t
ORIGIN      
        1 ttctaaaaat tcagccactt tagcatcata taaaggattc ccactttttt caactgaagt
       61 atagccaaat tttccatttt catcaataaa aatttttacc ttaacagaaa ttttttcact
      121 atttggataa tactgagtcc atctttgagt gataatacgc acaactttcc ctaaaaattc
      181 atcataaatt ccaatctttt gcgcctttgt gctttcgcct tgcgttgaac tttcttcttg
      241 aagtaaacta tcattaagtt gttttacaag ttcagaagct tgaggttttg gggcactaga
      301 aattcctgat ttagcacttg attgaatttt tgtagtcttt tcttcttgta tttctttaat
      361 atttccaaaa agctcattaa aattacttgc cttttggtca atatcttcag ttttaactgt
      421 tttatttgta gtctgagcaa aaagcttttc tatatcaatt tgctctgttg gtttttgtat
      481 ttctttagga gtgttgcttt gagtaataac ttgttttgat ggttcagcaa gttcaatatc
      541 tacaaaacta tcttttatat cagtatattg tatagcaggt tcaacctcgc ttacaagtct
      601 aaaaaaaaca agaattacta tactaatata tattgctaaa gcaagtaaaa acgaatttaa
      661 attactcaaa ccataatttt tcatgattat tcagtctgta aagcaacttt attaaatcct
      721 aaatttttta cacttcttaa gactgaaata acatcgtcat attttaagct tttatcagcg
      781 cgtataaaaa ccggatcttc ggtattaaat tgtgcttttc tttgagcaag attgtcagca
      841 aaacttataa aatcgtattt ttcttgattt aaaaaaattt ctttttttgc attaatacta
      901 ataattaaac tcttaacagt tggagtgctg gtattttttt gactaccttg tggaagatta
      961 attttttctt cataagtaat gcttggagct gttaccatta aaatcgcaag caatacaagc
     1021 ataatatcta ctaaaggtgt gatattaagt tcaggttttt catcatcaaa tggcattttt
     1081 aaccttattt actcgaactt ataactttaa tctcgctatc aataatgctt aaaagttcaa
     1141 aagcttttct tttaatgatg agatgaaatg tataagcagg aattgctact aaaataccac
     1201 aacctgtagc aactaaagcc tcgctgattt taggagctat gatacttaaa gaattttgag
     1261 ttccaagccc accaaaagtt tcaagtatag aaataactgt cccaaaaaga cctataaaag
     1321 gtgaagttga agcaataata ctaagccaag taagtccagc agaagcgcgg cgacttgcta
     1381 aatttttata gatttctaaa tgatttgaag ttgtatcatt acattttctt aaaatcgaat
     1441 cagtacgact taaatccttc tcacccaaga gcaaagtttc taaactttct ttttctttat
     1501 ttctccatgt agccaaataa gtcaatctag caaacaaaat actaaatgct aaaataaaat
     1561 ataaagaaag ccataataaa actatataag taataatact tgaactattg aaaaaatgaa
     1621 atatagcttc aaaattcatt aatgcatcct tgcattatca agttttgaaa aagttgctgc
     1681 taaagctgca ttatcagaac tcatagattt aatcaaatct tttgcttgag caagattttt
     1741 ttcaatctca ctttcatcac ttccacaaac ccaaaccgca ccctttgcta acacgcaaat
     1801 cttatcttca tctacctttg catgtccagc atcaatagca attaattcat ggtttaaatc
     1861 agctttttca atatcaatta ctccagattt taaagaagaa accaaagcag catgtccttt
     1921 aagcacgcca aattctcctt cactacccgg taaagtaaca gattttactt ctccttgata
     1981 gattacaccc aaaggcgtaa ctatctcgaa attaatcaaa tcgttcataa attaaccttt
     2041 taatttatcc gcttttgcaa tagcttcatc tatatttcca accatataga aagcattttc
     2101 tggtaaatga tcatatttac cttctaaaat tcccttaaat cctgctattg tatcttcaag
     2161 gcttatatat tttcctgggc tacctgtgaa aacttctgca acgaaaaatg gttgtgataa
     2221 gaatttttca atctttcttg ctctttcaac tacaagttta tcctcttcgc taagctcatc
     2281 catacctaaa atggcgatga tatcttgtaa atctttgtat ttttgaagca ctgattgaac
     2341 accacgagca actttataat gttcttctcc aatgatattt gggtcaagca ttcttgaagt
     2401 tgagtcaagt gggtcaactg caggataaat acccttttca gcaatagctc tatttaaaac
     2461 cgttgtagca tctaagtgag caaaaacagt tgctggagct gggtctgtta agtcatcagc
     2521 tggaacgtaa acagcttgaa ctgaagtgat tgagcctttt ttagttgaag taattctttc
     2581 ttggaattta cccatttcac ttgctaaggt tggttgataa cccacagctg atggaattct
     2641 tcctaaaagt gctgacattt cagaacctga ttgtgaaaat ctaaagatat tatcaataaa
     2701 cataagcaca tcaagaccca tttcatctct aaaatactca gccattgtta aacctgttaa
     2761 agcaatacga tttcttgccc ctggtggttc attcatttgt ccataacata gagcaacttt
     2821 gtctaaaaca ttactttctt tcatttcatt ataaaggtca tttccttcac gagttctctc
     2881 acccacacct gcaaatacag aatagccgct atgcttaaat gcaacattgt gaataagctc
     2941 cataataata acagttttac caacacctgc accaccaaaa agacctactt taccaccttt
     3001 tgcataagga gcaagtaaat ctacaacttt aatccctgtt tcaaaaatct cactttttgt
     3061 gctttgatct tcaaaagctg gtggatctct atgaattgcc cattttttat caaaagaaat
     3121 ttcttcacgt tcatcgatca aatctccagt aacattgaaa attcttccta aaactttctc
     3181 accaacagga acactaatgg gagcacctaa agcctcagct tttaagcccc ttaccaaacc
     3241 atctgtcata tccatagcaa tagttctaac tctattatct cctaaatgag ctgctacttc
     3301 taaaacaagt ttatgttttt ttccttcgct ttcaaaattt acaacaattg cttcattaat
     3361 ttgaggcaaa tagtcgttaa aatctacatc aacaaccgga cctaatacct gtgaaataaa
     3421 tccttgcatt atttatcttc tccttaaaat tttactattt cattgattca acaccactga
     3481 taatctctat aagctcagta gtaatggatt cttgtcttgc tttgttataa gctaaattta
     3541 gttgtttcac tcttgccttt gcgttattag ttgcattatc catagcttgc attcttgcgc
     3601 tatgctctgc cgccaaagaa tcgattaacg cataatacat attatactca aaatacgttt
     3661 tcattaaatc ttttaaaagc tcagttcctt ccggttcaag ctctaaaaga gaattatgag
     3721 tctgttcaat actctttggc tcaactggaa taagatgatt aattttaagt tcttgggtaa
     3781 tcatattttt ataaccatta tgaactaaaa tcacttcatc tgtatttcca tttaaaaaat
     3841 catctacagc agcatgaatt acttcacatg ctttctcata atcaggacta gaactaagat
     3901 ggaaatattt ctctaacaat tctatttttt gaaaattaaa atattcaatc ccagttttac
     3961 ctatagctct aagacgaata ttaatatttt ttgcttcata ttcttttagc atttcactta
     4021 ctgtttttaa agtcttaata ttaaaaccac cgcataagcc tttatctgca gtgataaata
     4081 ttaaatctac ggttttaatt tgttcttttt tatgaaacaa agataaacgc acatcatctt
     4141 cattgtgaac aattttattg atctgaaatg aaatttcact caaaatttca tcgatttttt
     4201 gtgcataaat ttttgatctt ttagctgctt cttctgcttt ttttaactta gcagtagaaa
     4261 ctagcttcat agcatttgta gtcttttgag tgttatgaac acttttaatt tttcttttaa
     4321 tttcttttaa attagacata aaagacctta taaatgattt gctttaaact cattaatggc
     4381 tttagctagt ttttcttcca aatcagaatc taaagctttt ttagagcgaa tttgctcaaa
     4441 aatatctgga tgttttgcct caataaaagg ataaattcca tcttcaaatt ccttaattct
     4501 agaaacagca atatcatcta agaaaccttt ggttcctgca aaaattaaaa ctacttgttt
     4561 ttcaacgcta agcggagaat aaggtggttg ttttaaaagt tcaaccattc tttgtccacg
     4621 ttcaagttgt tttctacttg cctcatctaa atcactagca aattgtgcaa aagcttgaag
     4681 ctctctatat tgagcaaggt caagtcttaa tgtgcctgaa acttgttttg tagctttaat
     4741 ttgagcagcc ccacctacac gagatactga taaaccaaca ttaattgcag gacgaattcc
     4801 tgagttaaat aaatcagttt ctaagaaaat ttgtccatct gtaattgaaa taacattagt
     4861 tggaatataa gcagaaacat ctcctgcttg tgtttcaatt atcggcaatg ccgtcaaaga
     4921 accagcacct aattcatcat ttagcttgct tgctctttca agcaatcttg aatgaaggta
     4981 aaaaacatca cctggataag cttcacgacc tggaggacga cgtaaaatca aagacatttc
     5041 gcgataagct acagcatgct tgctcaaatc atcataaaca attaaagcat gttttgcgtt
     5101 gtctctaaaa aattcaccca tggttacacc agtatatgga gctaagtact gtaaagccgc
     5161 aggatctgaa gcaccggcat ttacaacaat agtatattcc atagcaccat gttcttctag
     5221 tcttttaacc acttgtgcca ctgtactttg cttttgacca attgcaacat atatacagat
     5281 aactccttga cctctttgag atataatagt atcaacagca acagtagttt tacctgtttg
     5341 tctatcacct atgataagct ctctttgacc acgaccaatt ggcacaagcg catcaatagc
     5401 tttaattcct gtatgtaaag gctcatgaac actttttctc gccataatac cttttgcttt
     5461 ttcttcaaca aaacgatatt cattagcatt gatcacacct ttagcatcaa ttggctcacc
     5521 taaagcattt acaacacggc caatcaaagc ctcacctact ggaactttaa gtaatttctt
     5581 aagtcttttt acagaagcac cttcttttaa accttctcct tttccaagta taacaatacc
     5641 tacactcgac tcttcaaggt ttaaggccat tcctttatca ccattttcaa attctaccat
     5701 ttctccagcc ataatattct taagtccata taccttagca acaccatcag ctacagaaat
     5761 aatctttcct gtttcttcaa tttcaagatt taaatcaaaa ttttcaattc tttctttgat
     5821 tattgaactg atctcatcag ctttaaattt catttacttt ttctccttag ataattttca
     5881 atatatattc gtttagctta ttttgaagag ctttcataga aaaagaaagt tcataaccta
     5941 attcttctaa ttctatttta acactatcat cttgactgat tttattattt agtttaatat
     6001 ttgcatcaaa ttttttgtta agtttgactt caagatcttt aagattttct tgacttaatt
     6061 tttctttaga atatacaata ccaacaaaaa tattttcttt aaaagctttt tgtctttcaa
     6121 gttctttaac tatttgagga atgcattcta atcttgaatt ttcaatcaaa agtcttaaaa
     6181 aattttgaaa actagaattt ttaatatcaa aaaaagaatc aagaaattcc atttttcttt
     6241 cttttttaat ctcattagat tctataatat ttttaaattt tggcaaaaca aaagcagaat
     6301 ttaaaataca caaattctga taaaaatcat ttatatcagc tcttgaagct atcgcttttg
     6361 catatcttct tgcaattata ttttccatat ttaagatacc ttcttcatca taagttctat
     6421 tatttcactc tgttttaatg tcatatttgg atcagaaaaa atttcattta aagtatttga
     6481 tactaattct ttttccattt ttctaaattc ataatctttt tgttcctcaa aatgtttttg
     6541 aagtaaatct aactcatctt gagtctcttt cttaatattt tgaactaaaa tttcagcttc
     6601 tttttttgct gtaattaaag cggcagcagc acttgcctta gcttcttcaa gttttttcat
     6661 cgtgtctaat ttcttagctt tactttctaa aagttttttt tgaatttcat caagtttaga
     6721 agaaattttt acaatacggt ttttgtaaaa atttttaaat ggagttgcaa caaaataata
     6781 caatatagct acaaaaatta gaaaattaat agtccttgga ataatatcat attctccact
     6841 accgtttgat gcaccaaaag catacaaagg tagcaaaaat ataataaaga ataacttact
     6901 catttctctc ctcttaaatt ttctttatgt tattttgcaa agcttgctta agctcagata
     6961 aatgtatgtt taaatgttct tgcaactctt ttttttgaac ggctaaatct gcataaaaac
     7021 tggccatttt tctttctaat tcttctttct tgcttctaag aatttgctct gcctcttctt
     7081 tagcagcagc tatagcactt tgtttaattt tttgaatttc ttctctagtg ttaatatgaa
     7141 tagcttctaa ttcatcattc acacctaaaa cttcttgaga attttctttt actttattct
     7201 catcattttt tatagaatca tttctttcat ccataaattt taa
//
LOCUS       DAPOLW010000081         7231 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.081, whole genome shotgun sequence.
ACCESSION   DAPOLW010000081 DAPOLW010000000
VERSION     DAPOLW010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7231)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7231)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7231
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.081"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..271
                     /locus_tag="ROE18_001213"
     CDS             <1..271
                     /locus_tag="ROE18_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDX3651390.1"
                     /translation="VSRETIKINSSNYICQNSKAAKEFSKLGFFVENMEAFSVLSVAK
                     NLNIDAECILCATNFCNENAHEDFIKNHQKAKENLEEYLKKYHYI"
     gene            294..1364
                     /gene="rlmN"
                     /locus_tag="ROE18_001214"
     CDS             294..1364
                     /gene="rlmN"
                     /locus_tag="ROE18_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HDX3651391.1"
                     /translation="MKELVNILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     SLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKEEKIDA
                     EGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQM
                     NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTI
                     RESKGLDISAACGQLKERAKEQ"
     gene            1361..1459
                     /locus_tag="ROE18_001215"
     CDS             1361..1459
                     /locus_tag="ROE18_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651392.1"
                     /translation="MTMLDIFEIIFITTVVIIGFGGIVFVVTKEKK"
     gene            complement(1473..1549)
                     /locus_tag="ROE18_001216"
     tRNA            complement(1473..1549)
                     /locus_tag="ROE18_001216"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1513..1515),aa:Met,seq:cat)
     gene            1685..1772
                     /locus_tag="ROE18_001217"
     tRNA            1685..1772
                     /locus_tag="ROE18_001217"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1719..1721,aa:Ser,seq:gga)
     gene            1819..1894
                     /locus_tag="ROE18_001218"
     tRNA            1819..1894
                     /locus_tag="ROE18_001218"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1852..1854,aa:Ala,seq:ggc)
     gene            1898..1973
                     /locus_tag="ROE18_001219"
     tRNA            1898..1973
                     /locus_tag="ROE18_001219"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1931..1933,aa:Val,seq:gac)
     gene            2001..2531
                     /locus_tag="ROE18_001220"
     CDS             2001..2531
                     /locus_tag="ROE18_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDX3651393.1"
                     /translation="MQNTIIQKAVNKDLNSILEITKDALNAMKTMNFHQWDENYPNEI
                     VFQEDIQAQELYVFKENDEILGFICINEKFKPEFYKQVIFNKNYDDKAFYLHRLAVKQ
                     NAKGKGVAQKLLNFCENFALENHKASLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(2511..3113)
                     /gene="leuD"
                     /locus_tag="ROE18_001221"
     CDS             complement(2511..3113)
                     /gene="leuD"
                     /locus_tag="ROE18_001221"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HDX3651394.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLEIVDELKKSQDKNIEISLLEKRVFFKDKIFS
                     FDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(3115..4527)
                     /gene="leuC"
                     /locus_tag="ROE18_001222"
     CDS             complement(3115..4527)
                     /gene="leuC"
                     /locus_tag="ROE18_001222"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HDX3651395.1"
                     /translation="MTMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSMDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVGPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYTKDLILYLIAQYGTAKGTGYAIEFCGELIRNLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGAKYD
                     ASITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALYYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGRKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            complement(4514..5590)
                     /gene="leuB"
                     /locus_tag="ROE18_001223"
     CDS             complement(4514..5590)
                     /gene="leuB"
                     /locus_tag="ROE18_001223"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HDX3651396.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFEFNEAKI
                     GGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERIARIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     AKSYLNTDEMGDCILEILKENDNG"
     gene            complement(5577..7121)
                     /gene="leuA"
                     /locus_tag="ROE18_001224"
     CDS             complement(5577..7121)
                     /gene="leuA"
                     /locus_tag="ROE18_001224"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002886492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HDX3651397.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLGINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRALDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTPIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGMATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQTYEIISPSAIGIHENRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYESEEENE
                     FVLEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPALKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGLSTDVIEASAQAFVSAYNAIYRSLKVKER
                     KMHENL"
BASE COUNT         2402 a         1364 c         1041 g         2424 t
ORIGIN      
        1 tgtttctcgt gaaacaataa aaatcaattc ttcaaattat atttgtcaaa attcaaaagc
       61 ggcaaaagaa ttttcaaaat taggtttttt tgtagaaaat atggaagcct tttctgtttt
      121 gagcgtagct aaaaatttaa atattgatgc agagtgtatt ttgtgtgcaa caaatttttg
      181 taatgaaaac gctcacgaag attttataaa aaatcatcaa aaggcaaaag aaaacttaga
      241 agaatactta aaaaaatatc attatattta aaaattcaaa aaggaaaata attttgaaag
      301 agcttgttaa tattttagat tttttacctg aagaattagg agaaaaaatc aaaccgatgt
      361 ttcgcgtgaa acaaatttat caatggattt atcaaaaata tgccaataat ttttccgata
      421 tgtcaagttt gccaaaagat ttgcgtttag aacttgcgca aaattttcat ttttctcctg
      481 taaaatgcgt taaaaatgag caaagtaaag atggaagtat aaaatatctt tttgaactta
      541 tcgatggttt aagggtagaa agtgtgcttt tgcctatgaa agaagaaaaa atagacgcag
      601 aaggcaaaag aatttctcat gcgagatata ctatctgtgt ttcttctcaa gtaggttgta
      661 aaagtggatg tagtttttgt cttactgcca agggtggttt gaaaagaaat ttaagtgcag
      721 gtgagatagt cggacaaatt ttatggatca aaaaacaaaa caatatccct tatgaacgcc
      781 gtgtaaatat agtatatatg ggtatgggcg agcctttgga taatcttaaa aatgtttcta
      841 aagcggtaaa aattttagcg caaaatgagg gacttgctat aagtcctcgc cgtcaaacca
      901 tcagtactag cggtttggca aaacaaatca aagaattagg tcaaatgaat ttaggtgttt
      961 tacttgctat atcattgcat gcggttaatg atgagcttcg aaccgaactt atgcctatca
     1021 ataaagctta taatatcgct gcgattatgg atgcggtgcg tgaatttcct atagatcaaa
     1081 gaaaaagagt gatgtttgaa tatcttttaa ttgatggtat caatgataag cttgaacacg
     1141 ctaaagaatt agtcaagctt ttaaatggca ttaaagccaa agtgaattta atactcttta
     1201 atccacatga aggaagttta tataaacgcc ctagtttaga aaatgcgatt aaattccaag
     1261 atttactaag taataaaggt gtaacttgta ctataagaga aagtaaagga cttgatatct
     1321 cagctgcttg tggacagctt aaagaaaggg caaaagaaca atgacgatgt tagatatttt
     1381 cgaaatcatt tttataacaa ctgttgtaat tataggtttt ggtggaattg tttttgtagt
     1441 aacaaaagaa aaaaaataat tattacattt aatggtgtca agggggagac ttgaactccc
     1501 gacctccggc ttatgagacc agcgctctaa ccagctgagc taccctgact aaaaataaaa
     1561 atataattat actacttttt actaaaaatt ttctgatttt taaaaaaaat aattttattt
     1621 tcaatattta aaaaatttct ttatttttaa agcttttata gatataatga acgctttatt
     1681 tcatagacag gtgtccgagc ggttgaagga gcacgcctgg aacgcgtgta aagtgcaagc
     1741 tttcgagggt tcgaatccct tcctgtctgc catcaaataa actttaaggc aaactaagtt
     1801 ataatacaaa cttcatttgg ggcattagct cagctgggag agcacaacgc tggcagcgtt
     1861 ggggtcagcg gttcgaaccc gctatgctcc accatatggt tccgtagctc agctggtaga
     1921 gcactacctt gacatggtag tggccgttgg ttcaagtcca atcggagcca ccatcaccct
     1981 tccttataca aaggattatc atgcaaaaca ctatcataca aaaagccgtc aataaagatt
     2041 taaattctat acttgaaatc acaaaagatg ctttaaatgc tatgaaaact atgaattttc
     2101 accaatggga tgagaattat ccaaatgaaa tagtttttca agaagatata caagcacaag
     2161 aactttatgt gtttaaagaa aatgatgaaa ttttaggctt tatctgtatc aatgaaaaat
     2221 ttaaacctga attttacaaa caagttattt ttaacaaaaa ttatgatgat aaagcctttt
     2281 atctacaccg tttagctgtc aaacaaaatg caaaaggcaa aggcgtggca caaaaacttt
     2341 taaatttttg cgaaaatttt gccttggaaa atcacaaggc aagtttaaga gcagatactc
     2401 atagtaaaaa ttttcctatg aattcgcttt ttaaaaagct tgattttaat ttttgtggaa
     2461 actttgacat acctaattac caagatcctt ttttagctta tgaaaaaatt ctaaaccaaa
     2521 aagctttttg agtttttttc ataggctttg atttgtgctt catgttttaa agttaaagct
     2581 atattatcaa gcccttccaa aagacaaatt ctgtgaaaat catctaaatc aaaagaaaaa
     2641 atcttatctt taaaaaatac tcttttttcc aacaaagaaa tttctatatt tttatcttgg
     2701 gattttttta actcatcaac tatttccaaa acctcatctt tagcaagttc tatagtgagc
     2761 aaaccgtttc ctaaggcatt gtttttaaaa atatccgcaa aagaaggtgc gataatagct
     2821 ctaataccat aatcaaccaa agcccaaggc gcatgctctc ttgaagagcc actaccaaaa
     2881 ttttcaaaac tcaccaaaat agagctattt tgatattctt ttttattgag attaaaatcc
     2941 atatttaaaa cactttcttt atcatctaaa taacgcaaat catggaacaa atgcttgcca
     3001 aaaccttgct tagacactgc aagtaaaaat tgcttaggta taatttgatc tgtgtctata
     3061 ttggcatatt ctaaaggaca agctatacct ttgtgtataa taaatttttg catattaaac
     3121 tcctaaatac tttctattat cacaaataac accttctatg gcacaagctg ctgcacttgc
     3181 aggactcatc aaatgagtga tagaaccttt accttgtctg cctacaaagt tacgatttga
     3241 agttgaagca actctttgac ctgaatttgc tttgtcatca ttcataccaa gacacataga
     3301 acaccctgca tatctccact cacaccctgc ctcgataaaa atcttatcaa gtcctaaatt
     3361 ttcagcttct tttcttactt gcattgaacc aggcacgatt aaagctttaa catttttatg
     3421 aattttgcgc ccttttaaga tatcagcagc tattttaaga tcttctaaac gcccatttgt
     3481 gcaagatcct ataaatacaa tgtcgatttt taccccttct ataacttgat cttgctctaa
     3541 atttacataa tataaagcat caagcaaaga tttttgctcg ctttgatttt taaaatcact
     3601 tatttttgga attttttcat ctatgccaat cacttgcgaa ggatttgttc catagctaat
     3661 ttgtggtttt atcttgctta catctagagt aatactcgca tcatattttg ctccttcatc
     3721 acttcttaaa ctcttccaat actcacaata cttttgaaat tcttctcctt taggtgcaaa
     3781 ttcctttccc ttaatatact caaaagtgat ctcatcagga gctatcatac ctactttcgc
     3841 tccaaattct atagccatat tacaaagagt cattctagct tccatgctta gatttcttat
     3901 aagttctccg caaaattcta tagcatagcc tgtgcctttt gctgtgccgt attgtgcgat
     3961 caaatacaaa atcaaatcct tagtataaac gcctttttga aactgccctt tacattcgat
     4021 tttcatagtt ttaagtttgg cttgttttaa agtttgcgtt gccatgacat gctctacttc
     4081 actcgtgcct ataccaaagg ctaaagctcc aaaagcccca tgtgttgccg tatgagaatc
     4141 cccgcaaact aaagtaaccc caggtaaagt aaagccaagc tcaggaccta ctatatgaac
     4201 tatgccttga tttttatctc caagtcctaa aagccttact ccaaattcct tagtattttg
     4261 catcaaagtt gtaatttgct cttttgccat atcagaacaa gcatttaaat ccatactttt
     4321 agttgaaaca tcatgatcta tagtagccaa agttaaatcc gctcttgcca ttctacgctt
     4381 agccatttta agccctgaaa atgcttgagg gcttgttact tcatggatta aatgtctatc
     4441 gatataaagt ataggaagtt cgtttttgcc ttcataaacc acatgagcat caaagacttt
     4501 ttcatataaa gttttagcca ttgtcattct cctttaaaat ttctaaaata caatccccca
     4561 tttcatcggt atttaaatac gacttagcat ttaaatcctt agtcattttt ccttgtgcca
     4621 atgccaaaga tatagcattt tctatatcct gtgcggcttg ttcttctttg aaactatact
     4681 ttaacatcaa agccgcactt aaaatttgag ctatgggatt ggctatattt aaatgagcta
     4741 tatcaggcgc acttccacct gctggctcat aaagtccaaa acctttatca ttcaaacttg
     4801 ctgaacttaa caaacccaaa gatccattaa tggcagctaa ctcatcactc aaaatatcac
     4861 caaaaagatt tgaacaaagc ataacatcaa aaatgctagg attttttaca atctgcatcg
     4921 cagcattatc cacatacatg tactctaagt ttatatcttg ataatctttt gcaacatttg
     4981 ccaccacttc tcgccacaaa atagaacttg ctaaaacatt cgccttgtcg attaaatgga
     5041 cttttttctt tcttattctt gcactttcaa aagcgatacg agctatcctt tctatctctt
     5101 ttttagtgta aatttcagta tcatacgcac tttctttacc taaatcctgc ttaccaaaat
     5161 aaatcccacc tgtaagctct ctaacacata aaatatccac tcctttttgg ataatctcat
     5221 tttttaaagg tgaagcatgg gttaaacttt cataaatttt acaaggacgc aaatttgcaa
     5281 acaaattaaa atgctttctt aaaggcaaaa gcgaggctct ttcaggtctt tgatctatgg
     5341 gcaaattatc ccatttaggc ccacccacag aaccaaataa aatcgcatca ctttgctcac
     5401 aaagctttaa agtttcatca cttaaagcca ctccataagc atctatactt gcaccgccta
     5461 ttttagcttc attaaattca aaactaaaat tgtatttttg tgcgataaaa gttaaaattt
     5521 ttaaagcctc tttcatcacc aaaggcccta tgccatctcc tgctaaaaca gctactttat
     5581 aagttttcat gcattttcct ttcttttact tttaaagagc gataaatcgc attgtaagca
     5641 ctcacaaaag cttgtgctga agcttctatc acatctgttg aaagtccttt tccatggaat
     5701 tttctccctt taaattccaa atctacatcc acttgccctt gagcatctac tcctgaactt
     5761 tttgcattga tactataagc ttttagcgca ggctttaaat tcgttatcct agcaatgcag
     5821 ttaaaaactg cttcaacagg accatttcct gtgcaagctt cagtttttag ctcttctttg
     5881 atacgcatac aaacacaagc agttgggata tttccactga tcacacttaa tttttcaagc
     5941 acaaattcat tttcttcttc actctcataa cttaaaaaca tcaaagcttc taaatcataa
     6001 tcatatactt gacccttttt atccgcaagg cgtaaaaaac gctcataaac atcatctaaa
     6061 ttataagtat tttcatcata gcctaaattt tcaaggcaag tttttatcat agcccttcca
     6121 cttcttgctg tcattaacat acgattttca tgaattccta tggcactagg gcttatgatc
     6181 tcgtaagttt gcctattttt aagcactcca tcttgatgaa tgcctgaact atgagaaaac
     6241 gcattgctac ccactatagc tttatgtgaa ggtatgcttt cattagtgat agctgaaacc
     6301 aattttgaag ttttaaagat attttcacat ttaatatcag tataaaaacc ttttaaataa
     6361 tcttttctag tttttatcgc cataaccact tcttctaaag cacaattgcc cgccctttcg
     6421 ccaagtccat ttatagtgca ctctatctgt cttgcacctt gtaaaatagc acttaaacta
     6481 ttgcccgttg ccatacctaa gtcattgtga caatgcacag aaataatagc tttgtctata
     6541 tttggcactt tgttaaataa aattttgatg atattagcaa attcgcttgg cagagtatag
     6601 cctacggtat ctgggatatt tatagtttta gcacctgctt ttatcgcatt ttccaccata
     6661 aaacaaagat tatctatagg cgttcttcct gcatcttcgc atgaaaattc tacatcatca
     6721 gtataagatc ttgctcttat aatcgctctt tttgccatag acaaaatttc atcaaaatct
     6781 ttttttaatt tatcttgcat atgcaaagtc gaagtggcta taaaagtatg aattctaaaa
     6841 tgctttgcca cttttaaagc ttcataagcc atatctatat ctttatccaa tgctctagaa
     6901 agtgcacaaa tagttgagtt tttaacctta gaagcgatct tttgcaccgc tttaaaatcc
     6961 ccttgtgaag ataccggaaa acctgcttct ataacatcta cgcctaaatt ttcaagcgct
     7021 aaagcgattt gtaatttttg attgataccc aaagaactgc ctaaagcttg ttctccatct
     7081 cgcaaagtgg tatcaaagat tatgatttta ttatctttca tgatttaatc ctttaaaacc
     7141 aaacagactg aatgaattaa aaattcaaaa acttaacaac aacaataaaa aattaaaaat
     7201 gtaaaaaatg attaaaaata aaattgagtt t
//
LOCUS       DAPOLW010000082         6997 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.082, whole genome shotgun sequence.
ACCESSION   DAPOLW010000082 DAPOLW010000000
VERSION     DAPOLW010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6997)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6997)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6997
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.082"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(47..985)
                     /gene="accA"
                     /locus_tag="ROE18_001225"
     CDS             complement(47..985)
                     /gene="accA"
                     /locus_tag="ROE18_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HDX3651398.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVAGLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADKLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEPTNGAHRNKEAAAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
     gene            complement(987..2201)
                     /locus_tag="ROE18_001226"
     CDS             complement(987..2201)
                     /locus_tag="ROE18_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HDX3651399.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAMQDAGFSEELDKEEFGIVS
                     ASGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVIGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVVSVMVLRDGVVPPTINQLVKDDECDLDYIPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            complement(2228..2461)
                     /gene="acpP"
                     /locus_tag="ROE18_001227"
     CDS             complement(2228..2461)
                     /gene="acpP"
                     /locus_tag="ROE18_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDX3651400.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            2571..3239
                     /gene="tenA"
                     /locus_tag="ROE18_001228"
     CDS             2571..3239
                     /gene="tenA"
                     /locus_tag="ROE18_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HDX3651401.1"
                     /translation="MMLFSNLIKENQKIWNAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCYARLALNSNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELDIK
                     DESLVNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYK
                     EWILTYGSENFQNEAKEFEDFVNSYTSSVGAQKFQKLSEIFHTVTRLEVAFWEHSLRM
                     ELNL"
     gene            complement(3263..4120)
                     /locus_tag="ROE18_001229"
     CDS             complement(3263..4120)
                     /locus_tag="ROE18_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase iron-sulfur
                     subunit B family protein"
                     /protein_id="HDX3651402.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPMLTTCSTCMLTLTKAKNTLDKGAKERIN
                     IFLAQGGMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDAF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTNSKARLPIIHLSQLVGLALGLSKEMVGLDY
                     NIIDASKIA"
     gene            complement(4124..5089)
                     /locus_tag="ROE18_001230"
     CDS             complement(4124..5089)
                     /locus_tag="ROE18_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HDX3651403.1"
                     /translation="MKIIIDRFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPSSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKGCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHAWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRCPKGI
                     SSVSDIANLRVMAIKKGLNEGLGPDHAEAFYKDLVEGSGRLNEIYLALRSEGVIGSMG
                     KTDIAFKLMRAGKMNPMHVFGEGEIEGYKDLVKMIKAAQEAAVKE"
     gene            complement(5086..6921)
                     /locus_tag="ROE18_001231"
     CDS             complement(5086..6921)
                     /locus_tag="ROE18_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDX3651404.1"
                     /translation="MGEFSRRDFIKTACISVGALAASSSGVYALDDSSKMDKDINLPS
                     CDVLVIGSGGAGLCAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGD
                     SYKLHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGG
                     ASKKRCNYSADKTGHILMHSCLDDAISSGVKFLMDHELLDIGVVDGKCEGVVLRDIQS
                     GGIYPVLCKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPT
                     GVANGGTLITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGY
                     GEGLGAYVLCDVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIE
                     VAKFEDMSTKIAGIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDAS
                     FGKGAKTHELAQKWQVRFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLL
                     AKKLEDIQARYEKIRIPNPNEVMNTAFTDYVELGNLILLSRCACLAARNRLESRGAHT
                     REDYPKRDDKNFLKHSIVNLENDELKLSYKDVVVTEFSLDGRRVQ"
BASE COUNT         2252 a         1476 c          928 g         2341 t
ORIGIN      
        1 taacaattat aaataataaa attatttaaa aaagcgaagt aaaagcctaa gcctcttgat
       61 aggctccaag ctttaaaatt ttctgcatac gatttgcaga aagttctcgt acatcaatat
      121 tttcaagttc atttagggat ttttttacat aatcagcaat agctactgct gcagcttctt
      181 tattgcgatg tgcaccattt gtaggttcgt ctatcacatc atcaattaaa ccttgagatt
      241 ttaaatcatc agctgttact ttcatagctt tggttgcagc ttcacttttt gcaggatcat
      301 tccaaagtat tgcagcgcaa ccttcaggag aaattactga aaaaacagaa tttttcatca
      361 ttgcaagttt atctgcaacc cctatagcta acgccccgcc actaccgcct tctccgataa
      421 ctatagcaat ggtcggtatt ttcaaatcac ttaattcata taaatttcta gcgatagctt
      481 cactttgtcc tctttcttca gcacctattc caggataagc acctggagta tctatcaaaa
      541 ataaaatagg aatttgaaat ttctctgcaa gtcctgctac tcttaaggct ttgcgatatc
      601 cttcaggatg tggcatccca aaatttctag cgattttatc ttttgttcca cgtccttttt
      661 gctcaccaat tacaattatt tttttctctc ctaaataacc cataaaacaa acaatagcag
      721 gatcatctct aaaggcacga tcaccatgta tttcgtgagc gtcatttaaa ataagttcaa
      781 tatagtcaag agcataaggg cgatctggat gacgcgctaa ttgcaaacgc tgaaaatcac
      841 ttaaattctt ataagtttta gaaatttctt tttcaagatt tttctttaaa attgatacag
      901 cttcagtatc tcctttaatc tgagcattga taatgtcctc gtcaatttgc tgaatatttt
      961 tttcaaaatc taaataagaa gccatattaa tctacttttt taaatacaac acagccattt
     1021 gtgccaccaa aaccaaaaga attactcatc accactttta aatctacttt tcttgatata
     1081 tttggaatat aatcaagatc acattcatca tcttttacaa gctgattgat tgtaggtgga
     1141 actaccccat ctcttaaaac cataacacta acaactgctt caattgcacc tgcagcaccc
     1201 aagcaatgac ctgtttgtcc tttggtggaa cttataagcg ggatattatt gccaaaaagc
     1261 tctttaattg ctgctgtttc atttttgtca tttacagggg ttgaagttcc atgtgcattg
     1321 atataatcta cctttggatt ccctgccata tttaaagctt ttttcatagc ccttaaaggc
     1381 ccatctaaag ttggtgaagt aatatgatgc gcatctgcac tttctccaaa tccaattaat
     1441 tcagcataaa tcgtagcacc gcgtttttta gcctcttcat attcctcaaa aactaaagct
     1501 ccagcacctt ctcccatgac aaaaccatct ctttctttgt caaatggtct tgaagcatgc
     1561 tgtggatctt catttctagt tgataaagct ttcattgaag caaaaccacc tatacccaca
     1621 ggacaaatcg cagcttctgc acctatgact aacatctttt tagcatttcc caaagctata
     1681 cttttataag cttctcctat agcatgagtt cctgctgcac aagctgtaac acaagaaata
     1741 tttggccctt taagtccatg ctctatagaa atcaaacctc ctaacatatt tacaagtgct
     1801 gaaggtatga aaaaagggga aattttacgc ggacctcgct cggaacaaat aatggaattt
     1861 ttttctatgt taggcaaacc tccaatacca gaagccgaaa caatgccaaa ttcttcttta
     1921 tctaattctt cactaaatcc agcatcctgc attgcttctc ttgctgcttt aattccaagt
     1981 tgtatgaaac ggtcaatttt ttttacttct ttgccatcaa caacctctaa tggatcaaaa
     2041 tttttaactt cagctgcaat ttgaacagga aagtccgtag catcaaaaag agtaatttta
     2101 tttactccgc tttctccatt gcaaattgct ttaaatgaac tttctttatc taaaccaagg
     2161 gcattgatca taccaatacc tgtaactaca actcttttca agaataagct ccttgcaaga
     2221 aaaaaaatta tttttttaga ttgtcaatat aatttacaac atcttcaatt ttaattaatt
     2281 tttcagcatc actatctgga atttctactt caaatttttc ttctaaagcc ataataagct
     2341 ctacaacatc taaagaatca gcacctaaat cttcaataat ttttgattcc attttaactg
     2401 catctgcatc aatacttaat tgctctacta ctactgcttt tacatcatca aatgttgcca
     2461 tttgttctcc tttaaaaaat taaaataaag cgtattttac tataaaaagc ttaaaatatt
     2521 tatagttttt cattatactt gaaaataaaa tattaaaaca taaaggaaaa atgatgcttt
     2581 tctctaattt aatcaaagaa aatcaaaaaa tttggaatgc ttatctacat catgattttg
     2641 ttaaaaaatt ggaagataaa agcctaaagc aagaaaattt tcttttttat ctcaagcaag
     2701 attatattta tttgcttaat tacgcaaaat gttatgcaag attagcactt aactcaaata
     2761 ctgcaaaaga acttcgtttt gctatgaaat ttcaaaatta tatagttgaa ggagaaatgg
     2821 aacttcatcg tgcaatttta tctcttggca ttaatgcaga tgaactcgat ataaaagatg
     2881 aaagtttagt caatatagcc tattcgcgtt atatgttaag cgtaggtgaa aatggagatt
     2941 ttttagatat gttagttgct cttagtgctt gcgctatagg ctatgcaaaa ataggtgctg
     3001 aaattataaa tcgtttaaaa aatgaaaatt taaaagatca tccttacaag gaatggattt
     3061 tgacctatgg aagtgaaaat tttcaaaatg aagctaaaga atttgaagat tttgttaatt
     3121 cttatacttc aagtgttggt gcacaaaaat tccaaaaact cagcgaaatt tttcatactg
     3181 taacacgctt agaagtggct ttttgggagc attctttaag aatggaatta aatctttaaa
     3241 catgggcttt ttgcccatgt ttttatgcaa ttttacttgc atcaataata ttataatcta
     3301 aaccaaccat ttctttagaa agtcctaatg caagtcctac taattgtgat aaatgaataa
     3361 taggcaatct tgctttagaa ttagtataat cttgaaatct ttcttgatag atatcaagct
     3421 gcatttgaca aagtggacaa ggtgttacaa cacaatcagc ttgattttca cttgcattat
     3481 tgacaatttg actagacatt tttttcacag atttttctgc aggataagaa gcatgaaaac
     3541 cacaacaatc aaggcgtttt tcaaaaggaa ctattttagc ccctaaaact tctactacac
     3601 tttcaaaact ttttggattg gttgaacttt cttttttacc gaaagcatct tcaggtctta
     3661 aactatggca accataaaat aaagctactt ttaaatttga aagcggcttt ttcaccttgc
     3721 tttttaaatt atccaaatcc tcataaagct cccacaaaag acttgtaata ggcgttgaac
     3781 cttgatattt cattccacct tgtgctaaaa aaatattgat gcgttctttt gcacccttat
     3841 caagagtatt ttttgcttta gttaaagtta gcatacaagt actacaagtt gtaagcattg
     3901 gcattttcat ctcttctgct aaagcaatat ttcttgcatt agctaccaaa gtcgcaatag
     3961 gatcaacaca ctgcgcttga gaagccccac aacaactcca ccccttaatt tcattcaact
     4021 tccaacccaa aataggtgca atagcttcaa gtgaaatttt agattctttt gcagcttgag
     4081 ataaaacaca acctggaaaa aaagcgtact ctttttgcat attttactcc ttaacagcag
     4141 cttcttgtgc cgcctttatc attttaacca aatctttata cccttctatt tcaccctcgc
     4201 caaaaacatg cataggattc atttttcctg cacgcataag tttaaaagct atatctgttt
     4261 tacccataga acctataaca ccctcagaac gcaaagcaag ataaatttca ttcaagcgtc
     4321 ctgaaccttc aactaaatct ttataaaaag cttcagcatg atcaggccct aagccttcat
     4381 ttaaaccttt tttaatcgcc atcactctta aatttgctat atcacttact gaacttatac
     4441 cctttggaca acgatcagcg cactcttgac aatgaacaca aagccaaagt ccattcatta
     4501 cgctgggttt tacatgcaac ataggatcct tacctcgaga gtccgccgct gcacgccaag
     4561 catgagtaaa aacaaaaggt tgcatataat cgctactatc tgcttctaat ttattacact
     4621 ctgaagcaca gctaccacat aaaatacaat cccattgctt gctaatacga tcaaattctt
     4681 cttgactttg tttacagccc ttttccgctg aaaattcatt ttttgccacc atggcaggac
     4741 gaatttttct taaattttct atagaaggtt cccaatccac aattaaatca gaaattactc
     4801 taaaatttcc aagcggagaa atgcgtatac ttgaaggatt atcatattct tttaacaaat
     4861 cttgcatttt agtatcacaa gcaagataag aatgcccatt cacacgaact gcacaagccc
     4921 cacaaattgc agattgacaa gaggcggtaa aatttaaagt aatatctttt gtttttttga
     4981 taaaaagcaa aagagagagc agagtttttc cttgtatatc cttatcatca atatcataac
     5041 tttgttcata tttttccttg ccattaaaac gatctatgat aattttcatt gtactctcct
     5101 tccatcaagt gaaaactcag ttaccacgac atctttataa ctaagtttta attcatcatt
     5161 ttctaaattt acaatgctat gttttaagaa atttttatca tctcgctttg gataatcttc
     5221 tctagtatga gccccacggc tttcaagtct atttctagct gctaaacaag cacagcgaga
     5281 aagtaaaatc aaattaccaa gctctacata atctgtaaaa gcagtattca tcacttcatt
     5341 aggatttgga atacgaattt tttcatatct cgcttgtata tcttctaatt tttttgctag
     5401 aagatcgagt ttttcttgag ttctaaaaat ccccatatta tcccaatttt gacttcctag
     5461 ctcttctcgc aattcataca tttcttgacc atttccgcca ttatttgtaa tttctttaaa
     5521 tctaacctgc catttttgag caagttcatg agtttttgcc ccttttccaa aacttgcatc
     5581 tttagcataa tttgtcgcac caatgcctgc taaatgccct gttacaactg catcggctaa
     5641 agaatttccc cctagtctat tagctccatg tatagaaatg caagaagctt ctccacctac
     5701 ataaattcca gcaattttag tactcatatc ttcaaattta gccacttcaa ttccacccat
     5761 agaataatgc gccgttggac ggataggtac aggagtatct actaaatcaa tattttcaaa
     5821 aagcattgca gtgtgacgaa tttttggtaa atcttttaaa attttttctt ttcctaagtg
     5881 gcgtacatcg cacaaaacat aagctccaag tccctcgcca taacctctac cttcacgaat
     5941 ttctgtttct atagcacgcg caaccacatc tcgcggtgca agctccattt tttcatggta
     6001 atttttcata aaacgctcac cacgattatt taaaagatat cccccttcac cgcgcgccgc
     6061 ttctgtaata agagttccac catttgcaac tcctgttggg tgaaattgta tcatctcagg
     6121 atcttcaaaa ccaagtcctg ctctaagagc agctgccaca ccatctcctg tggcaataaa
     6181 aggagttgaa gttctattat aaaatatcct tgtgtatccc cctgtagcaa tcaccaaagc
     6241 tttgcataac acaggataaa ttccaccgct ttgtatatct cttaaaacga caccctcgca
     6301 ttttccatcc acaacaccta tatccaaaag ttcatgatcc attaaaaatt tcacaccact
     6361 actaatagca tcatctaaac aagaatgcat taaaatatga cctgttttat ctgcagaata
     6421 gttacagcgt ttcttagaag ctcctcccat taaacgctga gctactccac cttgctcatt
     6481 tcttgaaaac aaggttccta taaaatccat attaaaaata gcctttccag ctaattcgca
     6541 aaattttaaa gccgcatctt gatctaccaa ataagctccg cctttaatag tatcataagc
     6601 atgtaattta taggaatctc cattagaaaa atcagtaact ccattaattc caccctctgc
     6661 catacaagtt gcgttacgcg atggcatcat ctttgtagct actacaacgc ttaattttgg
     6721 attttctttt ctcactgcgg ctgcagcaca caaacctgct ccacctgatc caattaccaa
     6781 aacatcgcaa gaaggtaaat ttatatcttt atccatctta gatgaatcat ctaaagcata
     6841 aactccactt gaacttgcag ctaaagctcc tacactaata caggctgttt ttataaaatc
     6901 tcttctagaa aattcaccca tatcattctc cttatttaaa aaaattaata ataattttta
     6961 atgtaagtca atcttacata accgcatgcc aaaaatc
//
LOCUS       DAPOLW010000083         6949 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.083, whole genome shotgun sequence.
ACCESSION   DAPOLW010000083 DAPOLW010000000
VERSION     DAPOLW010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6949)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6949)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6949
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.083"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            18..2771
                     /gene="ileS"
                     /locus_tag="ROE18_001232"
     CDS             18..2771
                     /gene="ileS"
                     /locus_tag="ROE18_001232"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HDX3651405.1"
                     /translation="MDYKETLLLPSTTFAMRANLAELEPQRFKKWFEQNYAYEKMKEN
                     RKNAKKGFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQVEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALLKSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEHVLMDGGSGLVHTAPGHGEDDY
                     YACLKYGIEVLMPVDDSGCYDETLRAKGLLPSHLLEEFIGLHIFKANEKILELLGEKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAKEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDELFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYKAENLEKVYDILDVWFDSGSTFNAVLNSGLYDAGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINESAPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLEV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENAQRRKSAQVAMALIAKELLNLLAPNLSYSVDEALEHANVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKDEETPCLRCEEVLKG
                     IQC"
     gene            2765..2875
                     /locus_tag="ROE18_001233"
     CDS             2765..2875
                     /locus_tag="ROE18_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651406.1"
                     /translation="MLENPIPNSIIITTIAVVLAFSALAVFLIKKTKENK"
     gene            2872..4233
                     /gene="gatA"
                     /locus_tag="ROE18_001234"
     CDS             2872..4233
                     /gene="gatA"
                     /locus_tag="ROE18_001234"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HDX3651407.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKIGAYIEQFLDKDL
                     SVSGEGVPVAIKDNISVKGWELTSASKILQGYIAPYDASAIVNLKANGFSPFGRCNMD
                     EFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTAPNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASANLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKAKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEGLNISAQLICKAYDEQTLLDGALSLEQM
                     IKN"
     gene            4243..5700
                     /gene="guaB"
                     /locus_tag="ROE18_001235"
     CDS             4243..5700
                     /gene="guaB"
                     /locus_tag="ROE18_001235"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HDX3651408.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESDFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDNFGRLRV
                     GAAIGVGQMDRVDALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAAGASSVMIGSLLAGTDESPGDLFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            5697..5870
                     /gene="xseB"
                     /locus_tag="ROE18_001236"
     CDS             5697..5870
                     /gene="xseB"
                     /locus_tag="ROE18_001236"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HDX3651409.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            5863..6639
                     /locus_tag="ROE18_001237"
     CDS             5863..6639
                     /locus_tag="ROE18_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HDX3651410.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGANLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKLKCALLFGFETHFDIFWQQIM
                     AKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKILKNF"
     gene            6651..>6949
                     /locus_tag="ROE18_001238"
     CDS             6651..>6949
                     /locus_tag="ROE18_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HDX3651411.1"
                     /translation="MRKILLQIFIFSVLFIVTFAINRILMQNSFIPTGLISDKNEIFL
                     MYLLGVFHDIRFLSAAFLPFLLCGFLSLIFSNIKINNKLVIYSKNFYFIFSSVYI"
BASE COUNT         2473 a          884 c         1427 g         2165 t
ORIGIN      
        1 aaaattaggt ggaaaaaatg gactacaaag aaactctact tttgcccagc actacttttg
       61 ctatgcgggc gaatttagcg gaacttgaac cgcaaagatt taaaaaatgg tttgagcaaa
      121 attatgctta tgaaaaaatg aaagaaaatc gcaaaaatgc gaaaaaaggt tttaccttgc
      181 acgatggccc cccttatgct aacggacata ttcatatagg acatgcttta aataaaattt
      241 taaaagaaac tattatcaaa acgcattatt ttaaaggtga gagtgtgcgt tttactccag
      301 ggtgggattg tcatggttta cctatagaac aacaagtaga agtaaagctt ggagaaaaga
      361 aaaaaagctt aagcaagaaa gaaattcgtg agttttgcag acaacatgcg agtgaatttg
      421 tagatatcca aagagaagaa tttaaaaatt taggcattat tgcggattgg gataagcctt
      481 atttgactat gaaatttgag tttgaagcag cgatttatag aactttatgt gagattgcta
      541 aaaaaggctt actttgtgag cgttctaaac ctgttttttg gagttgggcg gcaaagtcag
      601 ctttagcgga agctgaagta gagtatcaag ataaagaaga ttattctatc tttgtggctt
      661 ttgatttaga tgtaaaagct tgcgaaaaat taggcgtttc aaaagcaagc gcagtgatat
      721 ggacaactac gccttggact ttggtggcta atcaagctat agccttaaat cctaacgaaa
      781 attatgtgat cactaaagaa ggtttgattt ttgcaagtgc tttgcttaaa agcatggtag
      841 aaaaaggact tacaagtgga gaaattcaaa aagaattaaa cgcaaaagaa tttgaaaaac
      901 ttgaagctat caatccttta aatggaagaa aatctgtttt aattatgggc gagcatgtat
      961 tgatggatgg tggaagtgga cttgtacata ctgcaccagg acatggcgaa gatgattact
     1021 atgcttgttt gaaatacggt attgaagttt taatgcctgt tgatgatagt ggatgttatg
     1081 atgaaacttt aagagctaaa gggcttttgc cttctcattt gcttgaagag tttataggtc
     1141 ttcatatttt taaggccaat gaaaaaattt tagaactttt aggcgaaaaa cttttacatt
     1201 cttctaaatt tatacactct tatccatttt gttggagaac gcataagcct gtgatttata
     1261 gagctactaa acaatggttt attttaatgg atgaaccaaa acttcaagga aaaactttaa
     1321 gagagtgtgc aaaagaacaa cttttaaaaa caacctttta tccgcaaagt ggggtaaaaa
     1381 gaataggttc tatggtggaa aatcgcccag attggtgtat ttcaagacaa agggactggg
     1441 gaacgcctat agcctttttt agagataaaa acactaaaga agtgattttt gatgatgaac
     1501 tttttgactt tgtagcagct atttttgaaa aacacggtgc tgatgcgtgg tgggagtttg
     1561 aaatcaaaga tttaattcct acaaattcaa aatacaaagc tgaaaattta gaaaaagtat
     1621 atgatatttt agatgtttgg tttgatagcg gaagtacttt taatgcagtt ttaaatagcg
     1681 gactttatga cgcaggagaa aaaagagcaa gtatgtattt agaaggaagc gatcagcatc
     1741 ggggttggtt tcaaagctct ttgcttgtag gtacagcgat caatgaaagc gcaccttatg
     1801 aaagcatttt aactcatggt tttaccaccg atgaaaaagg gcaaaaaatg tctaaatcta
     1861 aaggcaacgt gatcgctcct gaatatgtag caaaaaccta tggagttgaa attttaagac
     1921 tttggatact tttaagtgat tattcaagtg atttaaaaat ttcagacaat atcttaaaac
     1981 aagtgggcga acaataccgc aaaataagaa acactataag atttttactt gccaatacaa
     2041 atgacttaaa agatttagaa gttaaagaat ttagttttat tgataaatgg atattaagcc
     2101 gtgcaactaa agtttttaaa gcaagtaaag aagcattttt tgcttatgaa tttgctaaag
     2161 gttttagttt gcttttaaat ttcttaagtg cggatttaag tgggatttat cttgatatca
     2221 gtaaagatag gctttattgt gatagcgaaa atgctcaaag aagaaaatct gctcaagtgg
     2281 ctatggcttt gatagcaaaa gagcttttaa atttacttgc tccaaattta agctatagtg
     2341 tagatgaggc tttagaacat gctaatgttt taatcaaagg cgatgcaaaa gatgtatttg
     2401 atctaagttt aactcaggat tttgattatg attttggtat agatgataca tttttaatga
     2461 gtgctagaga gaaatttttt gaacaaattg atatacttaa aaaagataaa atcattaaat
     2521 ctactttgga attaaattta aacatcagtt ttaataaatt cccaaatgag gaattagccg
     2581 attggtttat ggtaagtcaa atcagcaatg aaaatgaaga aattttggct gaatttgaag
     2641 tagagaatga gaaatttaaa atcaccaaag cttcactttg taaatgccca agatgttgga
     2701 aacttcaaag taaagatgaa gaaacacctt gtttaagatg tgaagaagtt ttaaaaggga
     2761 ttcaatgcta gaaaatccta ttccaaatag cattatcatc acaactatag cggtggtttt
     2821 ggcttttagt gctttagcag tatttttgat caaaaaaaca aaggaaaata aatgataact
     2881 ttaaaagaag ctttaaaata ctccaaagaa gaacttgaaa atttaaaaaa agaactcaat
     2941 gaaaaagcaa aaaaagaaaa aaaaataggt gcttatatcg aacaattttt agataaagac
     3001 ttaagtgttt caggtgaagg tgtgcctgta gctataaaag ataatatcag tgtaaagggc
     3061 tgggagctta ctagtgcgag taagatttta caaggttata tcgctcctta tgatgcaagt
     3121 gcgattgtta atttaaaagc taatggtttt tctccttttg ggcgttgcaa tatggatgaa
     3181 tttgctatgg gaagttcaac agcgagttct tattatggca aaactttaaa tcctttaaat
     3241 tttgagcgtg tgccaggtgg ttcaagtggt ggaagtgctg ctgcggtagc gggtggcttg
     3301 gctttggcaa gtttgggttc tgatacagga ggatctgtac gtcagcctgc agctttttgt
     3361 ggttgtgtag gatttaaacc gagttatgga agagtgagtc gctatggttt ggcttcttat
     3421 tcttcaagtt tggatcaaat tggggtttta acgcaaaatg tagaagatgc ggcaatttta
     3481 tatgatgcga tcgcaggata tgacaaaatg gatagcacga gtgcaaatat cgagtttatc
     3541 aaaaccgctc caaatttaaa tgcaaataaa aaattaaaaa ttgcagtgat tgaaaattat
     3601 gtcaatgatg cagatagtga agtaaaaaac gcacttttaa aaaccataga tatgttaaaa
     3661 gctaatggac atgagattgt atataaaaat ttgcttgatt ctaagtttga tattgcggca
     3721 tattatatca tcgcaacagc tgaagcaagt gcaaatttaa gtcgttatga tggggtacgt
     3781 tatggcaagc gttctgaaaa tatccaaaat ttaaaagaaa tgtatgtaaa tacacgcagc
     3841 gaaggttttg gcgaagaagt aaaaagaaga attttgttag gaacttttgt tttaagcagt
     3901 ggatattatg atgcgtatta tatcaaagca caaaaagcta gagcttttat caaggcaaaa
     3961 tatgaagaaa ttttgcaaga ttgtgatctt atttttatgc ctgtaactcc tacaacggct
     4021 tttaaatttg atactcaaaa aagccctatg caaacttatt tagaagatgt ttatactatc
     4081 tctgtaaatt tagcaggact tggaggcatt agcgtgcctg ttgcaaaaga taaagaaggg
     4141 cttaatatat cagcacaact gatttgcaaa gcttatgatg aacaaacctt gttagatggg
     4201 gctttaagtt tagaacaaat gattaaaaat taaggataaa agatgaaaat tgtaaaaaga
     4261 gctttaactt ttgaagatgt attattgcgt cctgggtatt ctgaagttct acccaaggaa
     4321 gtaaaaattc acactaaact aacaaaaaat atcactttaa atatgccttt aatctctgcg
     4381 gctatggata ccgttaccga acacagagct gctatcatga tggcaagact tggaggactt
     4441 ggggttattc ataaaaatat ggatatagct tcacaggtta gagaagtaaa aagagtaaaa
     4501 aaaagcgaaa gtggagtgat tatcgatcct atttttgtaa gtcctaaggc aagtgttgcg
     4561 gaagctttag aaatcatggc agagtataga atttcaggtg ttcctgtagt agatgaagat
     4621 aagaaactaa taggcatact taccaatcgt gatttaagat ttgagagtga tttttcaaat
     4681 ttggttgaaa atgttatgac taaaatgcct ttaatcactg ctccaaaagg ttgtactcta
     4741 gatgatgcgg aaaaaatttt tagtaccaat aaagtagaaa aacttcctat agttgatgaa
     4801 caaggacgct tggaaggact tatcactata aaagatctta aaaaacgcaa agaatatcct
     4861 gatgccaata aagataattt tggaagattg cgtgtgggtg cggctatagg agtagggcaa
     4921 atggatcgtg tggatgcttt agttgaagct ggcgttgatg ttgttgtgct tgattctgcg
     4981 catggacatt ctaagggtat tattgataca gtaaaagcaa ttaaggctaa atatccaaat
     5041 ttagatctta tcgcaggaaa tatcgccact gcagctgcag caaaagcact ttgtgaagca
     5101 ggagtagatg cggttaaagt aggtattggg ccaggaagta tttgcactac acgtattgtt
     5161 tcaggtgtgg gtgtgcctca aatttcagcc attgatgagt gcgtagaaga agcaaataaa
     5221 tttggcgttc ctgtgatagc tgatggtggg attaaatatt caggtgatat tgcaaaagct
     5281 ttagctgcag gtgcgagttc tgttatgata ggatcgcttt tagctggaac ggatgagagt
     5341 ccaggagatc tttttactta tcaaggaaga caatataagt cttatcgtgg tatgggttcg
     5401 cttggggcta tgcaaaaggg aagttcagac agatactttc agcaaggtac tgctcaagat
     5461 aaacttgttc ctgaaggtat agaagggcgc gttccttatg taggaagtat aagaagcgtg
     5521 gtgcatcaac ttttaggagg tttgcgttct tctatgggtt atgttggagc taaagatata
     5581 gaagattttc aaaaaagagc cgaatttgtt gaaattacca ctgcagggct taaagaaagt
     5641 catgtacatg atgttactat cactcatgaa gcaccaaatt acaaggtcaa tcatcaatga
     5701 gttttgaaga aaatttaaaa cacgctaatg aatctttgga aaaattaaac aatcaagagc
     5761 ttgccttaga tgaaagtgta aaaatttaca aagagggttt agaaagtatc aaaaaagcaa
     5821 gacttgagct tgaaaaagca aaattagaag tggagcaaat cgatgagtaa aatagcggct
     5881 ttacagtttc caactttagc tttaagtgaa tcaaggcttg attattatct caaagcttca
     5941 aaagacaatg gggcaaattt agtagttttg ggcgaatatg tgatcaacag tttttttaca
     6001 gaacttttgc atatgccaaa aaatatgata aaagaacaaa gtgaagctaa aaaagaaagc
     6061 ttgattaaac ttgctaaaaa atacgaatta gaaatcatcg ctccttatgt aagcgttgaa
     6121 gctaaaagtt ataaaaaact ttgcttaaaa gtgactccaa atggagttaa aagttatgaa
     6181 cagcaaattt taatgcctta tgaacattgg aatgaagaaa aatttttcag caacaaaact
     6241 ccatcagaat taaaaatttt tacttttaat tatgaaaaat taaaatgtgc tttacttttt
     6301 ggttttgaga cgcattttga tattttttgg caacagatta tggcgaaaaa aattgatttg
     6361 gttatcgttc ctagtgcttg tacctttgaa agtaaacaaa gatgggaaga acttttaaaa
     6421 acaagagctt ttttaaattc tacaagcatt ttaagagtaa atcgcatagg caaaacaaaa
     6481 gatgagtgga atttttacgg cgatactctg tttatcaatg cttttggcga gatagaaagt
     6541 aaattaggtt ctgaagaaga aatgcttatc atagagccta aaaaaagtga tgaagcaaga
     6601 aaactttggg gttttgataa aattcttaag aatttttaaa gaaggtaaat atgagaaaaa
     6661 ttttacttca aatttttatt tttagcgtat tatttatagt aacttttgcc attaatcgta
     6721 ttttaatgca aaattctttc atccctacag gtttaattag tgataaaaat gaaatctttt
     6781 taatgtatct tttaggtgtt tttcatgata taagattttt aagcgcagcg tttttaccat
     6841 tcttgctttg tggtttttta agtttaattt tttctaatat aaaaataaat aataaattag
     6901 taatatatag taaaaatttt tatttcattt tttcaagcgt ttatataat
//
LOCUS       DAPOLW010000084         6933 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.084, whole genome shotgun sequence.
ACCESSION   DAPOLW010000084 DAPOLW010000000
VERSION     DAPOLW010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6933)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6933)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6933
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.084"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            1..702
                     /locus_tag="ROE18_001239"
     CDS             1..702
                     /locus_tag="ROE18_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HDX3651412.1"
                     /translation="MDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECL
                     FDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLL
                     CVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDE
                     FLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRRE
                     ANKQRRTREKSQGIS"
     gene            677..868
                     /locus_tag="ROE18_001240"
     CDS             677..868
                     /locus_tag="ROE18_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HDX3651413.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKK
                     KEVLFQRSANWENYYIKAE"
     gene            868..1410
                     /locus_tag="ROE18_001241"
     CDS             868..1410
                     /locus_tag="ROE18_001241"
                     /inference="COORDINATES: protein motif:HMM:NF016750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HDX3651414.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAY
                     YIRKFAAFFGTNNVDHQARI"
     gene            1459..3672
                     /locus_tag="ROE18_001242"
     CDS             1459..3672
                     /locus_tag="ROE18_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HDX3651415.1"
                     /translation="MTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIV
                     VDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREE
                     AAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQ
                     MVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYE
                     WLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQ
                     QVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQW
                     RFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRS
                     IGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTD
                     IEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQE
                     KEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDL
                     VQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYL
                     TRLTPEMFCEINPELAKEQDIKVGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHF
                     TGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK"
     gene            3669..4310
                     /locus_tag="ROE18_001243"
     CDS             3669..4310
                     /locus_tag="ROE18_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HDX3651416.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            4307..5239
                     /locus_tag="ROE18_001244"
     CDS             4307..5239
                     /locus_tag="ROE18_001244"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HDX3651417.1"
                     /translation="MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLCWIKRML
                     PASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            5406..6188
                     /gene="fdhD"
                     /locus_tag="ROE18_001245"
     CDS             5406..6188
                     /gene="fdhD"
                     /locus_tag="ROE18_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HDX3651418.1"
                     /translation="MDPLFTTQILKYKGDESFTCNDTLVREIKLEIFINDEKVGALMA
                     TPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPEAIEASKISSDAKFSKDEILKQMSTFYTQCELYEKTGCVHTAKLF
                     VDEKTFFIGEDIAQHNTIDKALGKACLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPV
                     LVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            6181..6918
                     /locus_tag="ROE18_001246"
     CDS             6181..6918
                     /locus_tag="ROE18_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HDX3651419.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNINIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKTYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRAMELM
                     ENYSILQKDIEEYANKRFKELFLKGKK"
BASE COUNT         2409 a          861 c         1458 g         2205 t
ORIGIN      
        1 atggatttgg aaaaattaag attagctaga agtctttatt atcaatgtct aggagagctt
       61 tttgtttttt cattttctga agaaagattg tcaaaattac aagagtattt aaagacaatg
      121 caagaatgtt tatttgatga aaatttaaaa tcaaattttg atatcttgct taagcattta
      181 gatgatgaaa attctataca agcatttttt aaagaatatg atttgctttt tttaagtctt
      241 aaaaatagca ttccaacgac tttttcttac atagaagaag gttttgaaaa ttcaaatcct
      301 ttactttgcg tgcgtcaaat tttagtcaaa agtaaaataa gacgcaatga aaaatttttt
      361 aaagaaagtg aagatagtgt tggattttgt ttattgttga tgagtgaatt tttaaggcaa
      421 aatgaagatg atttagccaa agagcttttt gaaaaagtga tcaataaaag cattgatgag
      481 tttttaggcg atgttttcat gaataaaaat gcgaatttat ataaggaaat tgcaagtatt
      541 gcatcggctt ttatggaatt tgaaagactt tgctttgaag tggaaaaacc tgcaaaaata
      601 aattctaaaa aagtgcaaaa cgatctatcg cgttcagaat ttttaagaag agaagcaaat
      661 aaacaaagga ggactcgtga aaaatcgcag ggaatttctt aaaaaatccg cttttgcctt
      721 aggggctgct ggagtgcttg gtagcacaac tttagctcta gctaaagatg aagaaagaaa
      781 agatttagtt aaaggtaaaa gtaagaaaaa agaagtgctt tttcaaagaa gtgctaattg
      841 ggaaaattat tatataaagg ctgagtaatg tcaagtgtag gtgaaaatat caagcttacg
      901 cgtcgttctt ttcttaaaat ggcagcactt tcaagcctag caacaccgtt gcttgctaga
      961 agtgaaactt taagagaagc gagtgctgat gagcttaaag aagcttatga aggtagtaaa
     1021 aaagtaaaaa cagtttgtac agcctgttct gtaggctgtg ggattattgc agaagtgcaa
     1081 aatggtgttt gggtgcgtca agaaatcgct caagatcatc ctgtgagttc aggtggacat
     1141 tgctgcaagg gatctgatat gatcgatatg gtgcgttcac atgtgcgttt aaaatatcct
     1201 atgaaaaaag aaaatggaga atggaaacgc ataagttatg agcaagcttt aagtgagatc
     1261 ggagaaaaac tagctgctta tcgtaaagaa aatcctgaaa gtgttatgtt tttaggttct
     1321 gcaaaactta ataatgaaca agcttattat ataagaaaat ttgcagcatt ttttggaacg
     1381 aacaatgtag atcatcaagc tagaatttga cacagcgcaa cagtcgccgg tgtggcgaat
     1441 acatttggtt atggcgctat gacaaaccat cttggagaca tccaaagaag taaatgtatc
     1501 attatcattg gagcaaatcc agcggtaaat caccctgtgg gttttagaca tttcttaaaa
     1561 gcaaaagaaa aaggtgcaaa gcttatcgtt gtagatccta gatttacaaa aagtgcagca
     1621 aaagcggata tttatgcaag aattcgtcca ggaactgaca ttgctttcat gtatggaatg
     1681 ttaaaaatca tttttgatga aggcttggaa gatacaaaat atcttgatga aagagttttt
     1741 ggaattgata aaattcgtga agaagcagca aaatggacag ttgaagaagt ggaaaatgtt
     1801 acagggatct ctaaagaact tttggtgcaa atcactcacg aagtagctaa aaacaaacca
     1861 actacgctta tttgggctat gggtttaact caacatactg taggaacttc aaatacacgt
     1921 ttagcaccta ttgtgcaaat ggtacttgga aatataggta aatttggtgg tggagttaat
     1981 atcttacgcg gacacgataa tgttcaaggt gcttcagata tggcttgttt gagcgaaaat
     2041 ttaccaggtt attatccttt aaatgaagcg acttggagat actatgccaa aatttggggt
     2101 gtggattatg agtggctttt aggaaatttt gtaagcaaag attggatgca taaaactggg
     2161 ctttcacttg ctagatggtg ggcagcggct ttaaatggaa aagatggaaa tgatgctatc
     2221 gataatgcag gaacgccttt aaaagcttta gtagttatgg gaaatggtat tacttcgact
     2281 gcacaacaag taaaagttaa agaaggtttg gaagctttag agcttttagt tttagccgat
     2341 ccttttgtaa atgaagcagg gattattgca gaaagaaaag atggaattta tcttttacct
     2401 gcagcaacac agtttgaaac aagcggaagt gtaacagcaa caaatcgtag cggacaatgg
     2461 agatttaaag ttgtagatcc actttatgaa agcatggaag atcaagaaat tttatttgag
     2521 cttgctaaaa aattaggttt ttatgaagac tttaccaaga ctttacgcga tgaaaaaggt
     2581 gagattgttt ggcctgaaaa tgcaacaaga gaaattgcaa aagcagttag aagtataggg
     2641 cttaatggtt ggagtcctga aaggcttaaa aagcatactt tatactggga taaatttgat
     2701 gaggtaactt tagaaggaaa agacgaagtt gctggcgagt attacgggct tccttggcct
     2761 tgttggagtg ataagcaccc aggttctcct gtgctttata ataccgacat tgaagtagca
     2821 aaaggtggta tgggctttag aaacaatttt ggacttgaat atgaaggaga gagtttactt
     2881 gctaagaatg cacctttaaa ttcacctatt gatacaggtt atccacaaat tactaaagat
     2941 aatatagaaa aagttttagg tattacttta agtgctcaag aaaaagaaaa aatgggatca
     3001 acttggtctt atgatgatag caatatcata gcaactaaat gtatagaaaa aggcatagtt
     3061 ccttatggaa atgctaaagc tagagctgta gtttggactt ttaaagataa aattccactc
     3121 caccgtgagc ctttacattc tccaagaaac gatttggtgc aaaaatatcc aagttttgaa
     3181 gatcaaaaag cgctttaccg cgtggatact aaatttgttt ctgtgcaaca agctaaggat
     3241 tattctaaag aattcccgct taatcttgtt actgcaagac ttgtgaattt aaatggtgca
     3301 ggtatggaaa atagagcatc tatgtatcta acgcgtttaa cacctgaaat gttttgtgag
     3361 atcaatcctg aattagcaaa agagcaagac attaaagtag gagatatgat ttgggtgcat
     3421 tctccagaag gtactaaaat tcatgtaaga gtgaaggtta atccaggtgt agcaaaagat
     3481 atgattttct tgcctttcca ttttacagga gttatgcaag gcgtggattt aacgcacaat
     3541 ttcccagaag gaactaagcc ttatgcaagc ggagaaagtg ctaatacggt aacaaattat
     3601 ggttatgata tcatgtgtca gattccagag actaaaggtg gactttgtag aatcagtaag
     3661 gatggaaaat gagtaaggta aattttgcaa atttagaaaa agaacgcttg aaattctttt
     3721 gtgataatga gcgttgtatt gattgtaatg gttgcgcggt agcttgtgat gaagcacatg
     3781 agcttcctat tcatattcgc cgccgccgtg tgattacttt aaatgaagga attcaaggaa
     3841 aagaagtttc aacttctatt tcttgtatgc attgtgatga tgctccttgt tctatcgttt
     3901 gtcctgtgga ttgtttttac atccgtgctg atggtattgt tttgcatgat aaagaaattt
     3961 gcataggttg tggatattgt ctttatgctt gtccttttgg tgcaccacaa tttccaaaag
     4021 atagtgtttt tggaaataaa ggcattatgg ataaatgtac tatgtgtgca ggtggccctg
     4081 aagcaacgaa ttcagaaaaa gaaagagaac tttatggtca aaatcgtatc gcagaaggaa
     4141 aagtccctgt atgtgctgcg atgtgttcga caaaagcact tttagtaggt gaaagttcta
     4201 aaatagaaga gatttatcat aatagactta tgaatagaaa ttatggcatt ccaaatcctt
     4261 cggaaagttt ggaatggaag attgcttaca caggaaagga acgcttatga gaaaagtatt
     4321 tgtaacgctt ttattaagcg tagtgagttt atttgcttat ggtagcgaga gaatgggaca
     4381 agatactcaa atttgggatt ttcatcgtat tacaaatatc ccaaattatg atacttttgg
     4441 caaactttgg acaactttgc aaggtgaata tatagctact atagctttaa tcgctgttat
     4501 tgcggtattg tctgcatttg ctttgcatta tatggttata ggacctaagc aattttcaca
     4561 cgatggaaag aaaatttatg cttttacatt atttgaaaga ctttttcatt ttatcgcagc
     4621 gatttcttgg gtgattttag tgccaactgg ttttgtgatg atgtttggag aagtttttgg
     4681 gggtggagtt tttgtaaggg tttgtaaaaa tttacacgct tttgcaacga ttttgtttat
     4741 catctctata atccctatgt ttttatgctg gattaaaaga atgcttcctg caagttatga
     4801 tatcagatgg atgatgatag taggtggtta tttaagtaaa atcaaacgtc ctgtacctgc
     4861 aggtaagttt aattttggtc aaaaatcttg gtattatata gctgtatttg gtggattttt
     4921 gatgataatt acaggtggat ttatgtattt tcttgatttt aattccacgg caattcaagg
     4981 tctttttggt ttaactcaaa ttgaactttt gagaatttca gctatagtgc ataatttctt
     5041 gggtatagtg tgtgcagtgt tttttggtgt gcatatttat atggcagtat ttgcaatcaa
     5101 aggtagtatc cattctatga ttagtggtta taaagaagaa gaagaggttt atattttaca
     5161 ttcttattgg tataaagaat taagcaataa aaagcaaatt gaacctagtt tttcttatga
     5221 tcctaatgtg aaaatttaat ctttaaccgc tatgttatta catagcggta gttttaagct
     5281 tttttgaaat aaatagaacg aattttcttt tataagttga atctaaaatc tatttttcca
     5341 tatataaatt tgttatttat gtttttttga tataatatta tttaaagata tttaaaggat
     5401 aaggtatgga tccgttattt acaactcaaa ttttaaaata taaaggtgat gaatctttta
     5461 catgcaatga tactttagtg cgtgaaatta agcttgaaat ttttattaat gatgaaaaag
     5521 taggtgcttt aatggcaact cctgtagatg aacaggcatt agcaatagga tatttaatga
     5581 gtgaaaatat cattgcgaaa gtaagcgata ttgagagcat agaaacaaaa gatgatggta
     5641 tgagtgtgca tattaaagca aagattgata aagaaaattt agcaaagctt aatgctgaag
     5701 gtgtagttat aagtggttgc ggtagagcac atactgccaa tatcgatcca gaagctattg
     5761 aagcgagtaa aattagttct gatgcaaaat ttagcaaaga tgaaatttta aaacaaatga
     5821 gtacttttta tactcaatgc gagctttacg agaaaacagg ctgtgtacat acggctaagc
     5881 tttttgtaga tgagaaaact ttttttatag gtgaagatat agctcagcat aataccatag
     5941 ataaagcttt aggaaaagcg tgtttagctg gggttgattt aagtcaatgt tttttaatgg
     6001 ttagtggaag gctaagttct gaaatggtag ctaaagcagt tatgcataaa attccagtgc
     6061 ttgtttcacg cacggctcct acttgtttag gggttatgat agcaagaaaa tttgatttaa
     6121 cgctttgtgg ttttgctaga gaaaataaga tcaatattta tagtggagaa tttagaattc
     6181 atggataaaa atcaagaaaa agaaatcatc tcatatatga gagaattgtt aaatagcaat
     6241 gaaaaattag attgtggtac ggcttttaaa attgcaaaga aatttaatat aaatatagaa
     6301 aaaatcggac aattagccga tgaaaatcac atgagaattg ataattgcga gttggggcaa
     6361 tttggacatt tagattttga aaaagcaaag attgaagtgc ttaaaaaaat agaacctagt
     6421 ttagatgaaa agcgtagaat tttttgtaaa gatgcaagag atattgctaa agaaggttgt
     6481 ggacttaaaa gtatgcgttc agctttaaaa acttataagg ttgatgtaaa gtattgtcaa
     6541 cttggttgtt ttaaagaaaa aaaaggtaag caatttatag taagaacaaa aacttggatt
     6601 gaaaatgcgg atggagattt gctttttggt cgaggaaaaa cagaactttt agaacttatc
     6661 ggacaaacag gtagtttatt acatgcttct aaacttatgg ggattaatta taaaaaagct
     6721 tggatgcatt tacaaacctt acaaaaaaat tctcaagaaa ttttagttag cacaagacaa
     6781 ggacgctcta aagaatcagg aacaaaactt actcctagag ctatggaatt gatggaaaat
     6841 tactctattt tgcaaaaaga catagaagaa tacgctaata aacgctttaa agaattgttt
     6901 ttaaaaggaa aaaaataaat cttctatcaa aaa
//
LOCUS       DAPOLW010000085         6930 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.085, whole genome shotgun sequence.
ACCESSION   DAPOLW010000085 DAPOLW010000000
VERSION     DAPOLW010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6930
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.085"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..655)
                     /locus_tag="ROE18_001247"
     CDS             complement(<1..655)
                     /locus_tag="ROE18_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HDX3651420.1"
                     /translation="MSKIDEISSKSKANILEHLKKAYKETTFTRIESIDPVEHIQTTQ
                     DMLTEMKQKMSDNKYIVENATKDTLEEKINEIVAKYSFKSMIYGADLNLNLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCIVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQITHIIIY
                     "
     gene            complement(648..2087)
                     /locus_tag="ROE18_001248"
     CDS             complement(648..2087)
                     /locus_tag="ROE18_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HDX3651421.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRAKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKIMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANNVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWTVQNFASILPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            complement(2084..2824)
                     /locus_tag="ROE18_001249"
     CDS             complement(2084..2824)
                     /locus_tag="ROE18_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDX3651422.1"
                     /translation="MMKKVYFYATCLGSTAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKNRPEFSKI
                     KTFSSRVIELSQYLDEVLKVDYEDKGVPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELVELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGGRL"
     gene            complement(2948..4630)
                     /locus_tag="ROE18_001250"
     CDS             complement(2948..4630)
                     /locus_tag="ROE18_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDX3651423.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGIKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTVFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIVCIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNITTGILSPSITGIGEAKPLSLALGVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWVTLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIILIGIWTCIIAFFLQGIIPEVIVK"
     gene            complement(4802..5371)
                     /gene="cdtC"
                     /locus_tag="ROE18_001251"
     CDS             complement(4802..5371)
                     /gene="cdtC"
                     /locus_tag="ROE18_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
                     /protein_id="HDX3651424.1"
                     /translation="MKKIITLFFMFITLAFATPTGDLKDFTEMVSIRSLETGIFLSAF
                     RDTSKDPIDQNWNIKEIVLSDELKQKDKLADELPFGYVQFTNPKESDLCLAILEDGTF
                     GAKSCQDDLKDGKLETVFSIMPTTTSAVQIRSLVLESDECIVTFFNPNIPIQKRFGIA
                     PCTLDPIFFAEVNELMIITPPLTAATPLE"
     gene            complement(5382..6179)
                     /gene="cdtB"
                     /locus_tag="ROE18_001252"
     CDS             complement(5382..6179)
                     /gene="cdtB"
                     /locus_tag="ROE18_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HDX3651425.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRMQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            complement(6176..>6930)
                     /gene="cdtA"
                     /locus_tag="ROE18_001253"
     CDS             complement(6176..>6930)
                     /gene="cdtA"
                     /locus_tag="ROE18_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HDX3651426.1"
                     /translation="ACSSKFENVNPLGRSFGEFEDTDPLKLGLEPTFPTNQEIPSLIS
                     GADLVPITPITPPLTRTSNSANNNAANGINPRFKDEAFNDVLIFENRPAVSDFLTILG
                     PSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYPNDFAMIKNAKTNTCLNAY
                     GNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQAPITNLYGDFHKVFKIFT
                     VECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
BASE COUNT         2261 a         1235 c         1084 g         2350 t
ORIGIN      
        1 agtaaataat aatatgtgta atttgtggcc catgaacacc aaaaacagtg ataagttcta
       61 tatctgctgt tcttgaaggc cctgctataa ataagatatt agtaggtaaa atttcatttt
      121 ctttttttac taaatttaaa gcttcgctaa gacttttaac aacattttct tttttaagca
      181 atactatgca aagtttaggt gcaaggctta gcattctagg ttgggtttta cttgaaggta
      241 taagtgcaac tccgtgagag cttacccctg ctcttgcgtg aatgatggaa aaatcactat
      301 gaaaaacttc agatcttaaa ttttcgattt ctttatcaaa gcaaatcttt ttttctgctt
      361 tgatttgttc taaatttaaa tttaaatccg ctccataaat catactttta aagctatatt
      421 ttgcgacaat ttcattgatt ttttcttcta aggtatcttt tgtagcattt tcaacgatgt
      481 atttgttatc gctcattttt tgcttcattt ctgtaagcat atcttgggtt gtctggatat
      541 gttctacagg atctatactt tcaatgcgtg tgaaagttgt ttctttgtaa gcttttttaa
      601 gatgttctaa aatatttgct ttgcttttgc ttgaaatttc atcgatttta ctcatagctt
      661 actccttcta gtttttgcac ttctttataa agatccattt taatttgagg taattcttta
      721 aaagcgtacc attttttaat cacaggcaaa atgcttgcga aattttgtac cgtccagttg
      781 aaataatgtg cttttgaaag tgaaaaacgc catttatcgc cattggttgc gatattttta
      841 aattgtttaa aagcaaaggc ttctagggca ttgtgatgaa cattatttgc tcctaaaggt
      901 ggatttttac cttgtcctat tttatcacat cttaatttgc gaataagatc agccaaagga
      961 atttggactg gacaaacttc agaacaacgc ccacaaagtg aacagaaatt caaaatatct
     1021 cctgtatgat ctataccaaa aatattagga ctgattactt ctcctatagg tcctggataa
     1081 gtggtttgat aagcatgtcc gccgatttga tcataaacag ggcaaaaatt catacaagcc
     1141 ccgcatcgaa tacaacgcaa agcctcataa taatcctcat gagctaacat tttagagcga
     1201 ttgtgatcaa ataaaatcac atgtacttct ttaggaccat ctaaatctcc attttttcta
     1261 ggacctgtaa tgatattgtt ataagttggt ataaattgtc ctgtggctga aggagtaagt
     1321 aaagaaacca tagtagccgc atcttcaaag ctttccatga ttttttctat accacaaagt
     1381 gcgatatgaa tatcaggtgc tgtagtgcac attctaccat ttccttcatt ttctataagc
     1441 caaaaagctc cttctcttga catggcaaaa ttgaccccac taagtccaag ttttaagcct
     1501 tcaaaatctt ttcttaaatg ttctctagcc accgcattta aactttcggg ttcatcgttt
     1561 tctaaatttg ctcctaattt ttctttgaaa atttctccga tttcatggcg gtttctatgt
     1621 atggcaggta caactatgtg taaagggggt tcttcattaa gctgtaaaat aagctctcca
     1681 agatcggttt ctatagcttt taaacctttt ttttctaggt agtgatttag gcctatttct
     1741 tcacttgcca tagacttgcc ttttaaaagc ttggtgatat ttttttcttt catgatttca
     1801 tagacgattt cacaggcatc ttcatcacta cttgcccaat gcaccttaat gccatttttt
     1861 gtagcatttt tttcaaattc taaaagtctt tcttctaagc tcattaaggc attattttta
     1921 gcttgcttag ctttagctct taagccctgc cagtctttaa atctagcatc aataacattg
     1981 agtctatttt tttgcaaagt atgcatggca gtcattaaat tttcttgcat ttgtttgtca
     2041 ttgagtttaa tttgaacgat ttgttcgtga ggaatttttt gactcatagt ctccctcctt
     2101 ctaagcgttt aagtaaaaag tcatataaat gtatgccttt tatatccaaa cccattcttt
     2161 tcattgtgcc atctatattt aaaagacaac ctccatcacc actgatgaga tattttgcac
     2221 cgctattttg tatatctttg attttgcttc ttaccatagc atttgaaatt tcaggctctt
     2281 ttactgaaaa ggttcctcca aaaccacagc attcttcttc gtattgaagt tctactaatt
     2341 ctacgttttt tagttttttg ataagatttt tactcgcttg tatgcttttt tgcactctta
     2401 aagcatggca attagaatgc caagttactt ttataggtac acctttatct tcataatcta
     2461 cttttaaaac ttcatcaagg tattgtgaaa gttctatcac tctagagcta aaagttttta
     2521 ttttggaaaa ttcaggtctg tttttaaaaa gctctttata gtcatgactc atcatacccg
     2581 cacaagaacc actgggtaca acgatgggat aatctttatc aaataaatct acattatata
     2641 aagcgatctc acgactttca tcgaaataac ctgagttaaa agaaggttgg gcgcaacagg
     2701 tttgattttt tttgaaaatc acttcaatac cctcacgcct taaaagtttt atcgcattta
     2761 aaacgctttg ttgcatagca gtacttccta agcatgtggc gtaaaaatac acttttttca
     2821 tcatttttct ccttttagga taatttagga taaatgttct aatcctgtaa aaataaaagc
     2881 aaagtaaaat ttctaacaaa tattctaaaa acgaatattt gttgaaataa aacttaaatt
     2941 tttttaatta tttcactata acttcaggga tgattccttg taagaaaaaa gctataatgc
     3001 aagtccaaat tcctattaaa ataataaaag ctacagaata ttttaatgtg aatttgaaaa
     3061 gatcagattc ttttcccaca agtccaaccg ctgcacaagc tatagcaatg ctttgtggac
     3121 tgatcatctt cccaacaacc ccacctactg aattagctgc taaaaataaa gcttcgctaa
     3181 tacctagttt ttgagcgctt acttgttgca aggttccaaa aagtaaatta gcacttgtat
     3241 cagagcctgt taaaaatacc cctatccagc caatgattgg tgaaaagaaa gaaaaagcgt
     3301 cacctgtgtg tgcaaaagca agtcctaaag tagtgctcat accactattt ttagagataa
     3361 aagcaaaggc cacaaccaaa cctatggtga tacaaggtat agccatttct tttaaggtaa
     3421 cccaaaagca ttctgcagca tcttcggctt tgatttttaa aatagctata gttaaaaaag
     3481 cggcaagtaa aatcgctgtt cctgcttgag ctacggtttt tccattgatt aaatctacac
     3541 ccaaggccaa agataaaggc ttagcttctc ctatgcctgt gatagaaggg cttaaaattc
     3601 cagttgtgat attgctaaat tgtaaagtaa tacttgtata gcttaaaatt ccatccttat
     3661 caaagagagc tttaaaccaa ggttgtgtcc aaatgataat acaaacaatg agtaaaataa
     3721 aaggtgacca agcttttaaa atttgattaa aacttaaggt gttatcttga gtgaaattgc
     3781 tttcattgtc aaatctaaaa atattttttg gtttccaaaa tttcaaaaat acagtcgtaa
     3841 ctgctaaaga aaccacagct gaaataatat caggtaattc cgctcctagg tgatttgagc
     3901 ttaaaaattg agtagttgta aaacttagcg ccgcaactaa aatagctgga aaagtttctt
     3961 taataccttt aaatccatcc attaaaaaaa ctatgaaaaa aggtatagta aggcttaaag
     4021 gaactagcat tctacctacc atggcagaaa ctgaatgctg ttctatgccg acaagatttg
     4081 ccatagcaat aataggaatt cccaccgcac caaaagcaac aggagcggta tttgcgataa
     4141 gacaaagccc tgcagcttgt aaaggacgca agccaagtcc tactaaaagt gcagcggtta
     4201 tagccacagg gccaccaaaa cctatagcac cctctaaaaa tgaaccaaaa caaaaaccta
     4261 ttaaaatcac ttgaattcta tgatctggag taatgctcat cacgcttttt ttaatgattt
     4321 caaaagaacc tgacttgata gaaagtttgt aaagaaagat tgccgcgatg ataatccaag
     4381 ctataggcca cataccattt gtaaagcctt gaataaaact tgcacccact aaattccaag
     4441 gcattttata ggcaaataaa gctactaaag tagcaagtat aacagttaaa aaacctgctt
     4501 gatagccttt aagttttaaa acaaccaaac aaactaaaaa acatagtata ggtaaaaatg
     4561 ccactaaagc acttagccaa atatttgaaa aagggtcata aatttgttgc catgttaaaa
     4621 tttgttccaa tttttcctcc ttgataatta ttatgtataa atttattgta acaaaaaatt
     4681 acattaaaat aaaaaaatta tagagtaagg taaattacat tgtattatta ttaattattt
     4741 tgtgtatttt agtaatatca taaatattaa ataaatataa aaatagaaca agataaaaat
     4801 cttattctaa aggggtagca gctgttaaag gtggggttat aatcattagt tcatttactt
     4861 cagcaaaaaa aataggatct agggtgcaag gggctattcc aaagcgtttt tgtataggaa
     4921 tatttggatt aaaaaaagtt actatacatt catcagattc caaaactaaa gaacgaattt
     4981 gcacagctga agttgttgtt ggcattatag aaaatacagt ttctaattta ccatctttta
     5041 gatcatcttg acatgatttt gctccaaagg ttccatcttc taagatggct aaacaaagat
     5101 cgctttcttt tggatttgta aattgcacat aaccaaaagg aagttcatca gctaatttat
     5161 ctttttgttt taactcatcg cttaaaacaa tttctttaat attccaattt tgatcaatag
     5221 gatcttttga ggtatcccta aaggcgctta aaaaaattcc cgtttctaag cttcttatag
     5281 aaaccatttc ggtaaaatct ttcaaatctc cagtaggagt tgcaaaggct aaagttataa
     5341 acataaaaaa caaagtaata atttttttca tattaaatgt cctaaaattt tctaaaattt
     5401 actggaaaat gatctgaaac tatatgagat cttaaacttg caagcattaa aatcgcagct
     5461 aaaagcggtg gagtataggt ttgttgtcta tttgaatttc ctgtaattgc ataatcaaga
     5521 gtccctccgc ttgcttgagt tgcgctagtt ggaaaaacca ctctaattct atttgctaat
     5581 tctctatcca ctgtacttgt tatagtagaa ggatcacggt taaaatcccc tgctatcatc
     5641 cagttaactt gaggcatatt tgcaaaatgt gcatctacag ctgtgataat tgctcctaca
     5701 tctgttcctc cattagctaa agcatggata ttgaaaaaag catcatttcc attgcgaatt
     5761 cctataatgg gtcttgaaac tgtagtaggt ggaggtaaaa caatcacttc ttcagcttgc
     5821 attcttgaaa ctatagctaa atttacacga ttagctccta catcaacgcg agaataataa
     5881 ataaaaaccc tatcaggcct tgaaagagtt cctaaattcc actcatattc atcaataggt
     5941 gttccacctt gttgcacatg gcgtcctgtt ggagtggctg ttcttggtaa agttcctgct
     6001 tcttgtatca ttaagatatc taaggggttt gctccactta caagttgtct tacactaaca
     6061 ctccatttgc tttctgtggc tgcggatgag ccttgcaaat tccaagtgcc aacattaaaa
     6121 ttttctaaat ttgcaaaagc aaggttaaaa gataaaaata aacatataat ttttttcatc
     6181 gtacctctcc ttggcgatat aaaggttttg cggtaaaagg cggagtagtt aaaaaccatt
     6241 gttgatcaaa attatctttt tttgcacact ctacggtaaa aattttaaaa accttgtgaa
     6301 aatcaccata aagatttgta ataggtgctt gtatgcattt tccatttcct aaatttttaa
     6361 tttgaaccgc tgtattgctc atagggataa gtttccacat ttgtgcgtga ttgcttgcat
     6421 cacaaggata atggacaatt ccattaccat aagcattaag acaagtattg gttttggcat
     6481 ttttaatcat tgcaaaatca ttaggataaa gcaaaagttg ccaaactcta gcatcgccaa
     6541 atcctttgct atcgattaaa gtatagcccc aaatccaatt tccttgtgct aaagcccaaa
     6601 ccgttaaagc tgctccgcta gggcctaaaa tggttaaaaa atcagaaacc gcagggcgat
     6661 tttcaaaaat taaaacatca ttaaaagctt cgtctttaaa gcgaggattg atcccatttg
     6721 ctgcattatt gttggcacta ttgcttgttc tagttaaagg tggggtaata ggagtaatag
     6781 gtactaaatc agcaccgcta attaaacttg gaatttcttg attggtagga aaagtaggtt
     6841 caagtcctag ttttaaagga tcagtatctt caaattctcc aaatgaacgc cccaaaggat
     6901 ttacattttc aaatttagaa gaacatgcat
//
LOCUS       DAPOLW010000086         6831 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.086, whole genome shotgun sequence.
ACCESSION   DAPOLW010000086 DAPOLW010000000
VERSION     DAPOLW010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6831
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.086"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..338
                     /locus_tag="ROE18_001254"
     CDS             <1..338
                     /locus_tag="ROE18_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HDX3651427.1"
                     /translation="FICNCNPNVNAEKVEKELLKIIDKLKMGKISQKDLQRVKNNVKS
                     DFIFSLNNASAVANIYGSYLARGDINPLLNYEKDIQNLELKDLISCAKKYFIQENSTT
                     VILRKDSNG"
     gene            331..1227
                     /locus_tag="ROE18_001255"
     CDS             331..1227
                     /locus_tag="ROE18_001255"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HDX3651428.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SALTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYLAGLIESLEFRLPLC
                     SPSKENFAKIEEVMKKYKIKGF"
     gene            1227..2006
                     /locus_tag="ROE18_001256"
     CDS             1227..2006
                     /locus_tag="ROE18_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HDX3651429.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGANIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDVDFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMVRYAATELGEKNIRVNVVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
     gene            complement(2047..2352)
                     /locus_tag="ROE18_001257"
     CDS             complement(2047..2352)
                     /locus_tag="ROE18_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651430.1"
                     /translation="MELDQILLYAFIFLNLFALFGLFLGNKKKNQFNDKKFYKICPCK
                     KMAENGSLSTICIYSAVGGFFYSVLSIGFVGFGNWTLNFIFLLALLSVFLGWKLKLD"
     gene            complement(2364..2960)
                     /locus_tag="ROE18_001258"
     CDS             complement(2364..2960)
                     /locus_tag="ROE18_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDX3651431.1"
                     /translation="MQIIKQACGVYETNCYILFTPKGEFIIDPGTDALLFIKKHVKNP
                     LAILNTHGHYDHIWDNAKVKKEYNIPIYIHKNDAFMLHDDFNQGYDSSDADFLVDNED
                     ILNICGVDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHLPSWLRYF"
     gene            3034..3774
                     /locus_tag="ROE18_001259"
     CDS             3034..3774
                     /locus_tag="ROE18_001259"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HDX3651432.1"
                     /translation="MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCK
                     RALKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYALAKYLNLHENFIKKAPSADLWENQSDEADLGFSYTKIDEGLKALETNDEKLLRT
                     LDPSLIAMLKNRMQKNAFKGKMPEILEI"
     gene            3778..4704
                     /locus_tag="ROE18_001260"
     CDS             3778..4704
                     /locus_tag="ROE18_001260"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HDX3651433.1"
                     /translation="MNEEKNYELWLDNYFFKPNFWQKCLAFILLPLSVLYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLTQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLESKIKPYFNFTLPSGAYRLPKFYEKRADFIALEGRDFVRYSFVKENPKAV
                     LVTAIAKPFRLYEHFIKARACYFFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVK
                     DFGFKCQIIELNIELKDSLREKIKTYIKEFEQ"
     gene            4701..6113
                     /locus_tag="ROE18_001261"
     CDS             4701..6113
                     /locus_tag="ROE18_001261"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HDX3651434.1"
                     /translation="MKLVESRNVNNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEELFKKALKSYESFDDKNTPISLQKISEKTYINELWHGP
                     TRAFKDMALQPFGVLLSEFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNEIKALNYELCAAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNANNILSEFFNQGVYDLREKSLKKTISPAMDILISSNIERLLFAKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILALFDLKNS
                     DEKVFEARNIKKEILDWMQK"
     gene            6110..6829
                     /gene="kdsB"
                     /locus_tag="ROE18_001262"
     CDS             6110..6829
                     /gene="kdsB"
                     /locus_tag="ROE18_001262"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HDX3651435.1"
                     /translation="MIIIPARLKSSRFHEKILCDIGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKDHESGTDRINEACKKLALKDDEIIINVQADEPFIECE
                     NLLKFKEFASFCLDKKAFMASCYKKITQEEAMDPNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLSSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYERALKIYLEK"
BASE COUNT         2489 a          845 c         1248 g         2249 t
ORIGIN      
        1 tttttatttg taattgtaac cccaatgtta atgcagaaaa agtagaaaaa gagcttttaa
       61 aaatcattga taaacttaaa atgggtaaaa tttctcaaaa agatttgcaa agagtgaaaa
      121 ataatgtcaa aagtgatttt attttctcac ttaacaatgc tagtgcagtg gcaaatattt
      181 atggttcata tctagcaaga ggagatatca atcctttgtt aaattatgag aaagatatac
      241 aaaatttgga attaaaagat ttgatttctt gtgctaaaaa atattttatt caagaaaatt
      301 caactacggt aattctaaga aaggattcaa atggataaaa atattatcat tggggcgatg
      361 acggctctta ttacaccatt taaaaatgga aaagttgatg agcaaagtta tgcaagattg
      421 attaaaagac aaatagaaaa tggcatcgat gcagtagttc cagtaggaac aacaggagaa
      481 agtgcaactt taacccatga agaacataga acttgcatag aaatagccgt tgagacttgt
      541 aaaggaacta aagttaaggt tttagcaggt gcgggaagta atgcaactca tgaggcagtg
      601 ggtttggcta aatttgctaa agagcatggt gctgatggga ttttaagtgt ggcaccgtat
      661 tataataaac ctacgcaaca aggactttac gagcattata aggctattgc gcaaagtgta
      721 gatattcctg tgcttttata taatgttcca ggaagaacag gttgtgaaat ttcaacggat
      781 actattatca agctttttag agattgtgaa aatatttatg gagtaaaaga agcgagtgga
      841 aatatcgata agtgtgtgga tttgcttgca cacgaaccta gaatgatgct tatttcaggg
      901 gaagatgcga tcaattatcc tatactttca aatggtggaa agggagtgat ttcagtaact
      961 tcaaatttat tacccgatat gattagcgct ttaactcatt ttgctttaga tgaaaattat
     1021 aaagaagcta aaaaaatcaa tgatgagctt tataatatca ataaaatttt attttgcgaa
     1081 agtaatccta ttcctattaa aacggctatg tatttagctg gattgataga aagtttggaa
     1141 tttagacttc ctctttgttc tccaagtaag gaaaattttg ctaaaattga agaagtgatg
     1201 aaaaaatata agatcaaagg attttaatga atacagaatt tcaaggaaaa actttagtga
     1261 ttagcggtgg aactcgcggg ataggcaaag ctatagttta tgaatttgct aaagtgggtg
     1321 caaatatagc ttttacttat aattctaatg cgcaaattgc tgatgaaatg gttcaagatt
     1381 tggagaaaaa ttataaaatc aaagctagag cttatgaatt taatatctta gaacctgaaa
     1441 cctataaaga actttttgaa aaaattgatg tggattttga tagagtggat tattttatct
     1501 caaatgctat catttcagga cgtgcggttg taggtggcta taccaaattt atgaagttaa
     1561 aaccaaaggg aattaataac atttttacag ccacagtaaa tgcttttgtt gtgggcgcac
     1621 aagaagcagc taaaaggatg gaaaaagtag ggggtggaag cattatttct atctcatcta
     1681 caggaaattt agtgtatata gaaaattatt caggtcacgg tacagcaaaa gccgctgtag
     1741 aagctatggt aagatatgcg gctactgaac ttggagaaaa aaatatccgt gtaaatgtcg
     1801 taagtggtgg gcctattgaa actgatgctt taagagcttt tacaaattat gaagaagtaa
     1861 aacaggctac tataaattta agccctttaa atcgcatggg gcagcctgaa gatttggctg
     1921 gagcatgtct ttttctttgt tcaagtaagg caagttgggt tacaggacat actttcatcg
     1981 ttgatggtgg tacaactttt aaataaaaat taagaaaaat caatggattt ttcttaaaaa
     2041 tatttttcaa tcaagtttta atttccaccc taaaaaaaca cttaataatg caagtaaaaa
     2101 aataaaattt aaagtccaat taccaaaacc tacaaaacct atagataata cgctgtaaaa
     2161 aaatcctccc acagctgaat aaatacaaat cgtacttaaa gatccatttt ctgccatttt
     2221 tttacatggg cagattttat aaaatttttt atcgttaaat tgatttttct ttttatttcc
     2281 taaaaataaa ccaaaaaggg caaaaagatt taaaaaaata aaagcatata ataaaatttg
     2341 atctaattcc attttaatat accttaaaag tatctaagcc aagagggtag atggacttgc
     2401 tcttctttta aagtagtctc ttgtccatgt cctggtaaaa gtttaaaatc ttctttgtaa
     2461 gtcataactt tttctaagct ttgtttcatt aaatttgcat ctgaataagg aaaatcccat
     2521 cttcctatgc ttctataaaa taaaaaatct ccactaaaca tgatattttt acctacaatt
     2581 tctatcatag tgcaacctgg tgtgtgtcct ggtaaaaagt gaaatttaaa atcaactccg
     2641 caaatattta aaatatcttc attatctact aaaaaatccg catcgctaga atcatagcct
     2701 tgattaaaat catcatgtag cataaaagca tcatttttat gaatataaat agggatgttg
     2761 tattcttttt taaccttggc attatcccaa atatgatcat aatgcccgtg agtatttaaa
     2821 atcgccaaag gattttttac atgttttttg ataaataaaa gtgcatcagt tcctggatca
     2881 atgataaatt caccctttgg ggtaaataaa atatagcaat tagtttcata aactccacaa
     2941 gcttgtttga taatttgcat tttttgcctc tttaataaaa aatttgcctt aaataaatat
     3001 aattatacat taaattttta aaaggcaagc tttatggatt ggcaaaagat tacggaaaaa
     3061 atgtgtgatt ttatacaaga aaaagtgaaa aattctcaaa gtcaaggtgt ggttttgggg
     3121 cttagtggcg ggattgattc tgctttagta gcaacgcttt gtaaaagagc tttaaaagag
     3181 aatgtttttg ctcttttaat gccaactcaa atttcaaaca aagccaatct tgaagatgct
     3241 ttaaggcttt gtgcggattt aaatcttgaa tataaaatca tagaaattca aagcatttta
     3301 gatgctttta taaagcaaag tgaaaatacc actctagtat ctttgggaaa ttttgcagcg
     3361 cgtattagaa tgagtttgct ttatgattat tctgctttga aaaattcttt agtcataggc
     3421 acttctaata aaagcgaatt gcttttaggt tatggtacga tttatgggga tttagcttgt
     3481 gcttttaatc ctataggatc gctttataaa agtgaaattt atgccttagc aaaatacctt
     3541 aacttgcatg aaaatttcat caaaaaagct ccaagtgcgg atctttggga aaatcaaagt
     3601 gatgaggcgg atttaggttt ttcttataca aaaatcgatg aaggtttaaa agctttagaa
     3661 actaatgatg aaaaactttt aagaacgctt gatccttctt tgattgctat gttaaaaaat
     3721 cgcatgcaaa aaaatgcttt taagggaaaa atgcctgaaa ttttggaaat ttaaacaatg
     3781 aatgaagaaa aaaattatga actttggctt gataattatt tttttaagcc caatttttgg
     3841 caaaaatgcc ttgcttttat acttttacct ttaagtgtgc tttatgcttt ttttgcgatt
     3901 ttaaatactt tttttcgtaa aaaaatagtt tttaaaaagc ctgttattag cgttggtaat
     3961 ttaagttttg gaggtaatgg aaaaaccccg ctttgtaaag ctatagcaag ggaatttgat
     4021 ggtgttttta tagtacttag gggctataaa agaaagtcta aaggtttgtt tgttgttaaa
     4081 aatcaaaatg aaattttatg caccttaaca caaagtggcg atgaagctat ggagtatgct
     4141 tttgaagaaa atatcaaagg tgtgattgtg agcgaagata gagtaaaagg tattgaaaaa
     4201 gcttttgaat tgggagctaa aatcgttgtg cttgatgatg ctttttctaa atttcatatt
     4261 aaaaaatttg atattttact tgaaagtaaa atcaaacctt attttaattt taccttacca
     4321 agtggagctt atcgtttgcc gaaattttat gaaaaaaggg ctgattttat tgcattagaa
     4381 ggcagggatt ttgtgcgtta ttcttttgta aaagaaaatc caaaggctgt tttggtaact
     4441 gctattgcta aaccttttag attgtatgag cattttatca aggcaagggc ttgttatttt
     4501 tttaaagatc attatgagtt taaaaaagaa gaattagaaa atttgctaaa aaaacataat
     4561 tgcgatacac taatgcttac ttttaaggat tttgttaaag ttaaagattt tggttttaaa
     4621 tgtcaaatta tagaattaaa tatagaatta aaagattcat taagagaaaa aataaaaact
     4681 tatatcaagg agtttgaaca gtgaaattgg tcgagagtag aaatgtaaat aatgtatcaa
     4741 gttttaagga agctttgatt aacccaaacg ctccagaagg agggctttac tcacctttaa
     4801 atttgcctat ttttgaagga gaaaaatatg ccaatttgtc ttataaagat tttgctttaa
     4861 agcttataga aagttttggt tttggcgaag aagagctttt taaaaaggct ttgaaaagtt
     4921 acgaaagctt tgatgataaa aatacaccta tttctttgca aaaaatctct gaaaaaacct
     4981 atattaacga gctttggcat gggcctacaa gagcttttaa agatatggct ttacagcctt
     5041 ttggcgtgct tttaagcgaa ttttcaaagg ataaaaatat tttaattatc tgtgctacaa
     5101 gcggcgatac agggcctgca accctaaaaa gttttgaaaa tgcaaaaaat gttaaagtag
     5161 cttgtatgta tccaaaaggt ggcacaagtg gagttcaaga gttgcaaatg cgagctttag
     5221 ataaggataa cttgaaagtt tttgccatag atgaggattt tgacgcagcg caacgcactt
     5281 taaaagaatt gcttttttca aaagattttc aaaatgaaat taaagcttta aattatgagc
     5341 tttgcgcagc taattctgta aattttgggc gtattttatt tcagattatt tatcattatt
     5401 atgcgagttt aaaacttttt aatgagtttt tagaagaagt acaaatcatc gttccaagtg
     5461 gaaattttgg caatgcttta ggagcttttt atgctaaaaa aatgggagct aaaatttcaa
     5521 aaatcaaaat cgcttcaaac gcaaataata ttttgagtga attttttaat caaggcgttt
     5581 atgatttgcg tgaaaaaagt cttaagaaga ctatttctcc agctatggat atacttattt
     5641 catctaatat cgaaagactt ttgtttgcga aatttaaaga taaaagaact aaagaactga
     5701 tgaatttgtt aaaaaatgaa agatatttta aacttgaaaa agaagaatta caaagtttgc
     5761 aagaagattt tgaggcggat ttttgcaccg atgaagaatg tatgcaattt atcaaacaaa
     5821 gcaagatttt aatcgatccg cataccgcaa cttgttttaa aatgcttgat cctttaaaac
     5881 ctagcattat cacttctaca gcagaatgga caaaatttac tccaagtatg ataaaagctt
     5941 tatatgatag ggattctaag aatgaaaaag aagatttaaa atttatagct aaagagttta
     6001 atgtccaagt taaagatgaa attttggctt tatttgattt gaaaaatagc gatgaaaagg
     6061 tatttgaagc caggaatata aaaaaagaaa ttttagattg gatgcaaaaa tgattattat
     6121 tcctgcaaga ttaaaatcaa gtcgttttca tgagaaaatt ttatgtgata taggtggagt
     6181 gcctatgttt gtggctactg caagaagagt aagtagcgtg gatgaagttt gtatagcttt
     6241 agacgatgaa aaggttttaa gtatcgctaa agaatatggt ctaaatgcgg ttttaacaag
     6301 caaagatcat gaaagcggta cggataggat taatgaagct tgtaagaaac tagctttaaa
     6361 agatgatgag attattatca atgtccaagc tgatgagcct tttatagaat gtgaaaattt
     6421 attaaaattt aaagaatttg caagtttttg cttggataaa aaagctttta tggcgagttg
     6481 ttataaaaaa atcactcaag aagaagctat ggatcctaat ctggttaaag tgctttgcga
     6541 taaagaaggg tatgccttgt atttttcaag agctaaaatc ccttatgaaa gagaaaatta
     6601 cgaggaaagt tttaaagggc atttaggcat ttacgcttat agtgtcaaag ctttaaggga
     6661 gttttgttct ttatcaagtt ctgcacttga aagagcggaa aaattagagc agttaagagc
     6721 tatagaaaat ggtaaaaaaa tcaaaatgct tgaaatttca acaacaagca tggggattga
     6781 tactaaagaa gactatgaaa gggctttaaa aatttattta gaaaaataac t
//
LOCUS       DAPOLW010000087         6797 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.087, whole genome shotgun sequence.
ACCESSION   DAPOLW010000087 DAPOLW010000000
VERSION     DAPOLW010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6797
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.087"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(110..439)
                     /locus_tag="ROE18_001263"
     CDS             complement(110..439)
                     /locus_tag="ROE18_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HDX3651436.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLEAADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQKEKNK"
     gene            complement(436..1710)
                     /gene="hemL"
                     /locus_tag="ROE18_001264"
     CDS             complement(436..1710)
                     /gene="hemL"
                     /locus_tag="ROE18_001264"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HDX3651437.1"
                     /translation="MTNKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVAKHTLVAKYNDINSVKELFEKNKDIACIIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYDKLGKLAKKLTQGM
                     KKLADEKGLPLQACHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLA
                     PSQFETGFICSKMDDKIIDTTLEAVRESFKRI"
     gene            complement(1707..2054)
                     /locus_tag="ROE18_001265"
     CDS             complement(1707..2054)
                     /locus_tag="ROE18_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651438.1"
                     /translation="MKIVLMFFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGA
                     NGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            2134..2982
                     /gene="folD"
                     /locus_tag="ROE18_001266"
     CDS             2134..2982
                     /gene="folD"
                     /locus_tag="ROE18_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HDX3651439.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDDPAS
                     QTYVKSKAKACEECGIKSLVYYLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDM
                     VKEGVIVVDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            2992..3840
                     /gene="lepB"
                     /locus_tag="ROE18_001267"
     CDS             2992..3840
                     /gene="lepB"
                     /locus_tag="ROE18_001267"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDX3651440.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGPQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIVYANKTLYVRMHEGDEFMKEHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPAYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDKDKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(3862..5022)
                     /locus_tag="ROE18_001268"
     CDS             complement(3862..5022)
                     /locus_tag="ROE18_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDX3651441.1"
                     /translation="MKNIFETLKDLENQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNAALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDEYIEENKLIIKKTPKQYNAYRYKGEELKKGEILLQKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNANALPLLTMLQNASYLGIIKDDF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GENFVLILPGNPMAAYLSCFIFAKKIINLLSGNLDNPLTFYGKMGMDLKLKSGRNNLI
                     LGNLEKGIFTPFNENKFGSGMILPLIKSEFLLISEENTSELKKGDEITLLKI"
     gene            complement(5019..6275)
                     /gene="murA"
                     /locus_tag="ROE18_001269"
     CDS             complement(5019..6275)
                     /gene="murA"
                     /locus_tag="ROE18_001269"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HDX3651442.1"
                     /translation="MTYLEIEGTNHLSGNVAISGAKNAALPLIVSSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKVNFQNNSALLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAKGKTKLLNVAKEPEVVQLCEVLKDAGLEIKGIGTDELEIYGSD
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDNVNATHLSAVLAKLHQMGFETLI
                     AEDSIALLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALTAKGTSKVHRI
                     YHLDRGYENLEEKFKDLGVKITRLEE"
     gene            complement(6341..6769)
                     /locus_tag="ROE18_001270"
     CDS             complement(6341..6769)
                     /locus_tag="ROE18_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651443.1"
                     /translation="MKIDTLTKNFSNYQTQINKNNDLASNVHSDNVVKIQISDEARSL
                     SQANSKNEKEYEIKVSQEKIENHKDQNSIQSSKGGGNPALEALIAKLAEILAKIAELT
                     QKMTNANEQMKTTFQKQIDVLISQADVIQAQIQELQSQQA"
BASE COUNT         2143 a         1095 c         1080 g         2479 t
ORIGIN      
        1 tcatagctta aaaatgtatc taatttaaaa tgatttaacg atgaaaatat gatccaaaaa
       61 aataaatgaa taatggcaaa aatacaaaat agagcttttt tatgttccat tatttgttct
      121 tttctttttg aattttttct ttgatcaact catctctttc tttaaattct tcatagcttt
      181 ttacttgaac tttataagct ttataaacat taagtatagc agcactgatc ccccaaaaaa
      241 ctccaagcca aaaaagccaa ggataaggag taaatttttt aagcaaatat cctattccca
      301 cacctataaa tacagcaaca accatagaaa tgccaagact taaaccatcc gcagcttcaa
      361 gagttttgcg aatgattttt tgtcttttgc tgttggaatt ttctaagtga tttttttctt
      421 cttttaaaat attgctcata ttcttttaaa gctttcccta acagcctcta atgttgtatc
      481 tataatttta tcatccattt ttgaacatat aaagcctgtt tcaaattgag aaggtgctaa
      541 ataaattcca ttttcaagca tatttttgtg aaattttgaa aataatgcta gatcagattt
      601 taatgcatct tggtagtttg atacaggatc tttggtgaaa aagtatccaa acatagaacc
      661 tacatgacaa gcttgcagcg gaagtccttt ttcatctgct aattttttca ttccttgtgt
      721 aagttttttt gctaattttc caagtttgtc ataaagcttg gttttctttt tggcttttgt
      781 aagacttgct atacctgcag ccattgccaa aggatttcca cttaaagttc ctgcttgata
      841 aactccaccc aaaggactta aaatatccat aatttcagct ctagaagcaa atgctgctgc
      901 aggtagaccg cctcctatta ccttaccaaa agtaattata tctgcttgga tatgattgat
      961 tccataggaa ccaaggtaag atgctctata tccactcatt acttcatcaa aaatcagcag
     1021 agtttgattg tttttacaga tcttagcaag ttcttctaaa aaatcttgtt tagctggaac
     1081 taaccccata tttccagcaa taggctcaat gataatacat gcaatatctt tatttttttc
     1141 aaaaagctct ttaacgctat ttatatcatt atatttagct actaaagtgt gtttagctac
     1201 atcttctaaa acacccaaag aactaggaga gttaaaagta gcagcaccac ttcctgcact
     1261 cactaataat gaatcagaat gcccgtgata acatccttca aattttaaaa ttttatcttt
     1321 tttagtaaaa ccacgggcaa gacgaatagc actcatggtt gcttctgttc cactgcttac
     1381 aaagcggatc ttttctaaat gaggaaaatc agataaaaca agcttggcaa gttcagtttc
     1441 taataaagtt ggagctccaa aacttgaacc tttatgaagt gctttttgac aagctttttg
     1501 tatatcttta tcacaatgtc caaaaagtaa aggcccccag ctttgaacat agtctatata
     1561 agaatttcca tctatatcga aaatataagc accttttcca tgagaaataa attttggctc
     1621 actttgaaca tttgcaaaag cacgaactgg agaatttaca ccacctgcga tgaatttaca
     1681 cgcttcttta aaagcttttt tgtttgtcat ttttcttcct tgctaaattg cttgatgtaa
     1741 ttatataaag ttacaatttc atcatttgtt aaagagtaat ttggcatgat tgattttgcg
     1801 tctttactct gattaagaga atttttaaaa ttttcaaaac taagattttg tatacttgga
     1861 actttataag ctgttttaat accatttttc atataatatc ctaaaatttg ttcgcttcca
     1921 tttgctccat gacattcttt acaactaatg ccccttggat tttcataaag cattttagag
     1981 tattctttaa gagtgataaa atcagcacca aaaagactga tactaaataa aaaaaacatt
     2041 aagacaattt tcaaagtttc accttgttaa tgaagtttta atatgataca atttttactt
     2101 taaaaaagtg attaaattta tagaaggaaa ataatgactt tgcttgatgg taaagcttta
     2161 agcgcaaaaa tcaaagaaga attaaaagaa aaaaatcaat ttttgaaaag caaagggatt
     2221 gaaagctgtt tagctgttat cttggttgga gatgatcctg caagtcaaac ttatgtaaaa
     2281 tctaaggcta aagcctgtga agaatgtgga attaaatctt tagtttatta tcttaatgaa
     2341 aatactacac aaaatgaact tttggcattg attaatacct taaatcacga tgatagtgtt
     2401 catggaattt tggttcaact tcccttacct gatcatattt gtaaagattt aatacttgaa
     2461 agcattataa gtagtaaaga tgttgatggc tttcatccta ttaatgtagg atatttaaat
     2521 ttaggcttag aaagtgggtt tttgccttgt actccacttg gagttatgaa gcttttgaag
     2581 gcttatgaaa ttgatttaga aggaaaagac gctgttatta taggtgcttc aaatatagta
     2641 ggtcgtccta tggctactat gcttttaaac gctggagcta cagtaagcgt ttgtcatatt
     2701 aaaaccaaag atttgagcct ttatactagg caagctgatt tgattatagt agcagcaggt
     2761 tgtgtgaatt tacttcgatc ggatatggta aaagaaggag tgattgttgt tgatgttgga
     2821 atcaatcgtc ttgaaagtgg aaagatagtt ggagatgtag attttgaaga ggtatctaaa
     2881 aaatctagtt atataactcc tgttccaggt ggagtaggtc ctatgactat agccatgctt
     2941 ttagaaaaca cagttaaatc tgctaaaaat agacttaatt agggaaaatc tatggaaatt
     3001 ttaaagaaat tatataaatt ttcacagtct tggactggaa ctgtagttat tgttcttttg
     3061 gtgatttttt tctttataca agcttttgtt attccttctg gttctatgaa aaacacctta
     3121 ttagtagggg attttttatt tgttaaaaaa tttagctatg gtatcccaac tcctcatatt
     3181 ccttggttgg aaattcctgt tttgccggat tttaataaag atgggcattt gataaaagca
     3241 caagggccgc aaagaggaga tatagttgtt tttagaaatc ctagaaatga aaaagaacac
     3301 tttgtaaagc gttgtgtagg cacaggagga gataggatag tttatgcaaa taaaacactt
     3361 tatgtaagaa tgcatgaggg tgatgaattt atgaaagaac attatccgaa tgatcttgtt
     3421 actcttggag ggcaaattta tgtaaaagaa ccttataaac aaaaaggtat tcattatgat
     3481 ccaaaaaaag atatagaaag cgatatttta cgctttctta gcataggtga ttttgccatg
     3541 tctccagctt atattaaaga acttggaaat catataggtt ttagcggcgg aaatgcttat
     3601 gtttttgatg tacctgaaaa tgagtatttc atgatgggtg ataatcgcga ttattcttat
     3661 gatagtcgtt tttggggttc tgttccttat aggttgatag taggtaaacc ttggtttgta
     3721 tatttctctt gggataaaga taaaaatgtt cgctgggaaa ggatagggcg ttttgttgat
     3781 accttggaaa atgatgaaca atatatccat gatcatgatg atgaggataa attaagctaa
     3841 tgtttgtgaa aaacacaaac attatatttt taaaagcgtg atttcatcac ctttttttaa
     3901 ttcactcgta ttttcttcgc ttataagcaa aaactcactt ttaataagtg gaagtatcat
     3961 accagagcca aatttgtttt cgttaaatgg tgtaaaaata cctttttcta aatttcctaa
     4021 aatgagatta tttcttccgc ttttaagctt taaatccata cccattttgc cataaaatgt
     4081 taaaggattg tctaggtttc cacttaataa attaatgatt tttttagcaa aaataaaaca
     4141 agaaagataa gctgccatag ggtttcctgg taaaatcaat acgaaatttt caccttttct
     4201 ataaagctta gtaggtcttg cagggcgtgc ttttaaacct ttaaaaagcg gagtaaagcc
     4261 taattcatct aaagcttttt ccataaaatc agcctcgcca acgcttgcac ctcctgaagt
     4321 gattaaaaga tcaaaatttg tattttctaa agcctcttta gtgcttttaa aatcatcttt
     4381 gataataccc aaataagaag cattttgaag catagttagt aaaggcaaag cattggcatt
     4441 ataaatactt tcttcatcgc attcttgcca aggttctttt agctcatttc cacttgaaaa
     4501 aatacctatg cgaatttttc ttatgacttc tattttataa agcccttgag aagcaagcag
     4561 ggcgatatgt ttatcattaa gtttggtgcc tttttgaagt aaaatttcac ctttttttaa
     4621 ttcttcgcct ttatagcgat aggcattgta ttgtttaggg gtttttttaa tgatgagttt
     4681 attttcttct atatactcat cttctaacat taagatagta tcagcatttt tgggcatttt
     4741 agcccctgtc atgattttat agcattcatt cttagcaact gtataaaaat ttttatctcc
     4801 tgcaaaaata gtccctttaa tctccaaagc ctcattgata tcagtataat taaaagcata
     4861 gccatcaaga gcagcattgt caaaactagg tagatttttt ctagcgtata aatctttagc
     4921 taaaattcta tcctttgctt tttcaaggct aataagctca ctttcatcta aacatgaaat
     4981 ttgattttct aagtctttta aggtttcaaa gatatttttc attcttcaag ccttgtgatt
     5041 ttcacaccca aatctttaaa tttttcttct aaattttcat aacccctatc aagatggtaa
     5101 attctatgga ctttgcttgt acctttagct gtaagagctg ctaagataag ggctgaagaa
     5161 gcgcgcaaat ctgtagccat gacatcagca gcgttaagtt cttttccgcc tactatggta
     5221 gcaatatgac cattgagttt aatatccgca cccattctta aaagttcact tacatgcatg
     5281 aaacgatttt caaatagtct ttcatcaata atactagttc cattagcttt taaagctagt
     5341 gccataaact gcgcttgcat atcggttgga aagcctggat attcacttgt catgatttct
     5401 acaggtttaa tttctttagc aggaagtagg gcgatactat cttctgcaat caaagtttca
     5461 aaacccattt gatgaagttt tgctaaaact gcactaagat gagtggcgtt aacgttatct
     5521 aaagtaattt tagaatttgt aatagcccct gcacaaagat aagttcctgc ctcaattcta
     5581 tcaggtataa cgctaaattc tttaaattct aaaagttctc catcactacc ataaatttca
     5641 agttcatctg tacctatgcc tttgatttca agtcctgcgt cttttaaaac ttcgcaaagt
     5701 tgaactactt cgggttcttt tgcaacattt aagagtttgg ttttaccttt agctagagct
     5761 gctgccatga tgatgttttc actacctgta accgtgattt tatcaaaaag aatttcattg
     5821 ccttttaaat ttccactagc tacgacatag ccttgtttga tttgtatatt tgcccccatt
     5881 ttttctaagg ctaaaagatg taaatcaata ggtctttgtc ctatggcaca tccaccaggc
     5941 aaagatactt cacaatgccc aaaacgagca agcaaaggcc ctagagtaag tatagaagca
     6001 cgcattttac gcacaatgtc atatttagct atggtttgat taagagtgtt tgtgtttaat
     6061 aaagcactat tgttttgaaa attgacttta gctcctaaat tttctagcaa agatataaga
     6121 gtttttatat cagcaacatt aggaacattg ttgattttta cttcgttttt agcaagtatg
     6181 cttgaaacga tcaagggtag ggcggcattt tttgccccgc ttattgcaac atttccgctt
     6241 agatgatttg tgccttcgat ttctagataa gtcatatttt tccttgaaaa agtttaaaaa
     6301 tgcaccatta tagcattctt aaacttttga aaaaatataa tcaagcttgt tggctttgga
     6361 gttcttgaat ttgagcttga attacatctg cttgagatat tagcacatca atttgttttt
     6421 gaaatgtcgt tttcatttgt tcgttagcgt ttgtcatttt ttgagtaagt tctgcaattt
     6481 tagctaaaat ttcagctaat tttgctatta aagcctctaa tgcgggattt ccgccacctt
     6541 tgctactttg aatggaattt tggtctttgt ggttttctat tttttcttga cttactttga
     6601 tttcatattc tttttcattt tttgaatttg cttgacttaa acttcttgct tcatctgaaa
     6661 tttgaatttt aaccacattg tcactatgaa cattacttgc caaatcattg tttttgttta
     6721 tttgtgtttg ataattgcta aaattttttg tcaaagtatc tattttcatc ttaaatcttt
     6781 ttaaattaat ttatatt
//
LOCUS       DAPOLW010000088         6788 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.088, whole genome shotgun sequence.
ACCESSION   DAPOLW010000088 DAPOLW010000000
VERSION     DAPOLW010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6788)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6788)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6788
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.088"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            59..529
                     /locus_tag="ROE18_001271"
     CDS             59..529
                     /locus_tag="ROE18_001271"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HDX3651444.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIARRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGATININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVRVIKYFEEKGYI"
     gene            531..1733
                     /locus_tag="ROE18_001272"
     CDS             531..1733
                     /locus_tag="ROE18_001272"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HDX3651445.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVANRVIQSAQQGNQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVTSALLSIALNEKGCPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNIEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            1734..2270
                     /locus_tag="ROE18_001273"
     CDS             1734..2270
                     /locus_tag="ROE18_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HDX3651446.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKATRPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSASDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSKVQLG"
     gene            2276..2875
                     /locus_tag="ROE18_001274"
     CDS             2276..2875
                     /locus_tag="ROE18_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HDX3651447.1"
                     /translation="MFISKIIISEDFLGIKEEMINNFGIKKLRFFIPQNEFLLDDARA
                     VEKESYIAETEEKIIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVIPSKNLLLPTIK
                     SRLICEKRKVEKEVKKLDLDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKECVKY
                     KDFNAEELEFFYESYELAKLNSKSGVLLATLLLNYYTKK"
     gene            2877..4019
                     /gene="folP"
                     /locus_tag="ROE18_001275"
     CDS             2877..4019
                     /gene="folP"
                     /locus_tag="ROE18_001275"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HDX3651448.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRVGAELITHKEVITAKITHSNALLMASKEQIQKLVVKEKLQDFGLK
                     NLALFLQKDFLKPKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPEYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYGAKYCLMHMQNNPNNMQDNPFYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFALAQAMDNIGV"
     gene            4020..5963
                     /gene="ligA"
                     /locus_tag="ROE18_001276"
     CDS             4020..5963
                     /gene="ligA"
                     /locus_tag="ROE18_001276"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HDX3651449.1"
                     /translation="MKKEEYLEKVALANLWMKAYYEKDEPLASDEEYDALIRELRVFE
                     EQNKDEISKDSPTQKIAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGE
                     NTLNFTKHSEVMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVV
                     RVDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWYKQSFEAYANLEGFGEQMALSLCEFTRVNRTRIDEFYKLLNLKIEK
                     LEIKSDGVIFGKTFVITGTLSRPRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSK
                     LSKAKELEVKCIDESAFNELVKE"
     gene            5944..>6788
                     /locus_tag="ROE18_001277"
     CDS             5944..>6788
                     /locus_tag="ROE18_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651450.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRSAFSLFFLISIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSLFYRVSMGDFYLYIFSFFLAIFGLVSLFLNFLNLEKID
                     FVFIFIILPLLMIFLKKELHLQFVDNAYNDFRIVVIASFFTALFYAFYGLFFTYNELL
                     NLELFSRKIIAYKSASFVYFDFLSEFLHFVSNLKFFIFSYFGYLGFRALNFIFDFFNF
                     FMFCSLLAFVFNFVLKIKIKIIVLFLCFIMVLGNYFLKEQRNNALKSEQEQILLWMNN
                     FNFLK"
BASE COUNT         2382 a          751 c         1315 g         2340 t
ORIGIN      
        1 taaaaatttg atttgattta ggttaaaatt atatccttga gatttaagga acaatattgt
       61 ggaaaacgag aaaaattata gaccaaatgt tgcagctatt gttttatcaa gttcttatcc
      121 ttttgagtgt aagattttta tagctagaag aagtgatatg gataatattt ggcaatttcc
      181 acaaggaggt attgataaag gtgaaagtgt caaaaacgct ttatttagag aactaaaaga
      241 agaaataggc actgatgagg ttgaaatcat tgctgagtat ccagaatggt tgagttatga
      301 ttttccgagt aaaattgtta aaaaaatgta tccttatgat gggcagattc aaaaatattt
      361 tttagtgcgt ttaaagcacg gtgctacaat caatatcaat actaagcatc ctgaatttga
      421 tgattatcaa tttgtgagtg ttaaacaaat ttttgaaatg attaatcatt tcaaaaaaaa
      481 tatttatgtt agagtgatca aatattttga agagaaaggt tatatctaaa atgcttatag
      541 ttcaaaaata tggtggaaca agcgttggaa cacttgagcg tatcgaagca gtagccaata
      601 gggttatcca aagtgcgcaa cagggtaatc aacttgttgt tgtagtatct gcaatgagtg
      661 gggtgacaaa tactcttatc gagcaagctg aatattttag taaaactcct aatggtaaag
      721 atatggatat gcttttaagc agcggagagc gtgtaacaag cgctttactt tctattgctt
      781 taaatgaaaa gggttgtccc gctatatcgt tttctgggag aaaagcagga attattacag
      841 atagtgtttt tacaaaggca agaattcatc atattgatac aaaagcgata aaatcagaac
      901 ttcaaaatgg taaaatagtt gttatagcag gttttcaagg tgtagatgag gaaggtaatg
      961 taactacctt agggcgtggt ggaagcgact taagtgctgt ggcggtggca ggtgccttaa
     1021 atgcggattt gtgtgaaatt tataccgatg ttgatggggt ttatacaaca gatccaagaa
     1081 ttgaaccaaa ggcaaagaaa ttggataaaa tttcttatga agaaatgctt gaacttgcaa
     1141 gtttaggtgc aaaagttttg caaaatcgct ctgtagaact tgcaaaaaaa ttaaatgtta
     1201 atttagtaac tagaagtagt tttaacaata acgaaggaac aatgataaca aaggaagatg
     1261 gaatggaaca agctttagta agtggtattg ctttggataa aaatcaagca agagtgactt
     1321 taagaaatat agaagataag cctggaatcg cagctgaaat tttttctgtt ttagcaaatg
     1381 aaaatattaa tgtagatatg attatacaaa atgttggagt tgatggtgct acaaatttgg
     1441 gttttacggt tcctcaaaat gaacttgaat tagccaaaaa tgctatgcaa aaaattttaa
     1501 gctcaaaaac aactatagaa agtgatagtg ctgtagtaaa agtttctata gtcggcgtag
     1561 gtatgaaatc acattcagga gtggcaagta aagcttttaa agctttagct gatgagggga
     1621 ttaatatcgg tatgatttct actagtgaaa taaaaatttc aatgatagtt catgaaaaat
     1681 acggagaact tgcagttaga gcactacatg agtgctacgg acttgataaa taaatgagtg
     1741 attttttaag ttttactctt gaaaatattc gcaatggcgg agcttttatg gcatggttgg
     1801 agtcgcgtcg tttagaatgg gctcctttga tggctgcaag acttaaatat cttttagaag
     1861 gacgcacttt tgtattaatg tgtgatgaac aaagatcttg gtatgaagag tattttttaa
     1921 aaaatataaa ttcaaaagcc actcgtccca tgctcccttt tgtgtcgtta aattctttat
     1981 gtaagaagaa agtacaaagt tcagaagata tagctttact taatgacttg cttgacattt
     2041 cttttcctaa tggttatgta tatttttata taggaagtgc ttctgataat aaatctttaa
     2101 tcgctaaatc aagagatgat agtttattgt ggctttttga tgagcagtta caagatagtt
     2161 tttatttaaa ttctaaagat aaagacttgg atatcaagct tattagttta tatcaacttt
     2221 ttgatgtaag tttggatgca atattatttt ccaaggtgca attaggataa atattttgtt
     2281 tattagtaag attattatca gtgaagattt tttaggtatt aaggaagaaa tgattaataa
     2341 ttttggtatt aaaaaattaa gattttttat accacaaaat gaatttttac ttgatgatgc
     2401 aagagcggtt gaaaaagaaa gctatatcgc agaaactgaa gaaaaaatta ttgttttaat
     2461 ggcggattct tataggatag aagcgcaaaa ttttttactt aaactccttg aagaacctcc
     2521 aaaaaatatt aaatttctta ttgtgatacc ttctaaaaat ttacttttac ctactataaa
     2581 atcacgtctt atttgtgaaa aaagaaaagt tgaaaaggaa gttaaaaaac ttgatttaga
     2641 tcttaaaaga atggatttaa gaatgctttt tgattttttg caaaaaaatg aaaatttgga
     2701 taaaaatgaa cttatggatc aaatcgcatt gcttgctaaa gaatgtgtga aatataaaga
     2761 ttttaacgct gaagaattag agttttttta tgaaagttat gagcttgcaa aattaaattc
     2821 taaaagcggg gtgcttttag ctactctttt attaaattac tatacaaaga aataaaatga
     2881 aattttttaa aatcaatcca aacaccgatt ttaatttgct ttgttctttc ataaaccctc
     2941 ataaaatggg acaaaagatc atgagtgaaa aaacaaaaat tcattttatt tttatcaaag
     3001 atatttctac tcctgcggca aatattttaa aacaagatgc tttaagagta ggagctgaac
     3061 ttattactca taaagaagta attactgcaa aaatcactca ttcaaatgcg cttttaatgg
     3121 caagtaaaga gcaaattcaa aagcttgttg tcaaagaaaa acttcaagat tttggactta
     3181 aaaatttggc tctttttttg caaaaagatt ttttaaaacc gaaaaaagcc gagcttatgg
     3241 cagtgattaa tgtcaatgaa gacagtttta atgcaaaaag tcgtgtgagt gaagaagact
     3301 ttgaaaaaag gcttaatgac tttcttgctt taaagcctga atatatcgat ataggtgcgg
     3361 taagctcaag acctgggagt gagtattgtg gcaaggaaga ggaatttaaa agactgaaaa
     3421 aagtacttga cttaatttat gagaaaaatt attacgaaca agcaattttt agtttagata
     3481 gttttgatga atattgtcta gaatatgctt taaataaggg ttttaaactc attaatgata
     3541 ttacaagttt aagaaatctt aatctagcca aacttgcaag taaatatggg gcaaaatatt
     3601 gcttaatgca catgcaaaac aatccaaata acatgcaaga taatcctttt tatgaagatt
     3661 tgcttgatga gatgactttg ttttttaaag aaaaacttga gcttttagaa agttttggag
     3721 taaaagaaag tattttagat gtaggtattg gttttggaaa gagtgcgggg cataatatga
     3781 ttttaatcaa acacttagaa cattttttgc aatttaataa acctttactt ataggtgcga
     3841 gtcgtaaaag tgtgattaat gcgtattttc aaagcgagat taaagatcgt ttagcgggaa
     3901 ctttatattt gcatttaaag gcttttgaaa atggtgctag tattataaga gtgcatgatt
     3961 tatatgagca taaacaactt tttgctttag cgcaggcaat ggataatata ggagtttaga
     4021 tgaaaaaaga agagtattta gaaaaagttg ctttagctaa tttgtggatg aaggcatatt
     4081 atgaaaaaga tgaacccttg gctagcgatg aagaatacga tgctttaatc agagaattaa
     4141 gagtttttga agaacaaaat aaagatgaaa tttcaaaaga ctctccaacg caaaaaatag
     4201 ctcctactat acaaagtgag tttaaaaaaa tagctcattt aaagcgtatg tggtcgatgg
     4261 aagatgtgtt tgatgagagt gagcttagag cttgggcaaa acgcgcaaaa tgtgaaaaaa
     4321 acttttttat agagcctaaa tttgatggag cgagtttaaa tttgctttat gaaaatggta
     4381 aattagtaag cggcgccact aggggcgatg gcgaagtggg tgaggatata acgcttaatg
     4441 tttttgagat agaaaatata cctaaaaata tagcctataa agaaaggata gaaattcgtg
     4501 gagaagtggt gattttaaaa gatgattttg agaaaatcaa cgaaaaaaga gcccttttaa
     4561 atcaaagttt atttgccaat ccacgcaatg ctgcaagtgg gagtttaagg cagcttgata
     4621 caagcatcac taaagaaaga aatttgaaat tttatccttg gggagtaggg gaaaatacct
     4681 taaatttcac caaacacagc gaggtgatgc aatttatcag agagcttggt tttttaaagg
     4741 atgattttgt aagactttgc gctaatttag acgaagtttt aaaagcttat gatgagcttt
     4801 tagctctaag agaaaaaaaa cctatgatga tggatggaat ggtggtaaga gttgatgatc
     4861 ttgcactttg tgaagaatta ggctatacgg taaaatttcc aaaatttatg gcagctttta
     4921 aatttcctgc gcttgaaaaa accacgcgtt taataggggt aaatttacaa gtaggaagaa
     4981 gtggagtgat cactcctgtg gcagttttag aacctgtaaa tttagatggg gttgtagtaa
     5041 aatcagccac ccttcataat tttgatgaaa ttgcaagact tgatgttaaa atcaatgatt
     5101 ttgtaagcgt gataagaagt ggcgatgtta tccctaaaat cactaaggtt tttaaagagc
     5161 gtagagaagg tttagagatg gaaatttcac gccctaagct ttgtcctact tgccaaagtg
     5221 agcttttgga tgaaggaact ttaataaaat gtcaaaatat agattgtgaa gatagacttg
     5281 taaattctat cattcatttt gtttctaaaa aatgtcttaa tatcgacgga ctgggagaaa
     5341 atatagtaga acttttatac aagcacaaaa aaatcactac gcttgagagt atttttcatt
     5401 taaaatttaa tgattttgaa ggtttggaag gctttaaaga aaagaaaatt aacaatcttt
     5461 taaatgccat agaacaagca agagaatgtg agctttttcg ttttatcaca gctttaggaa
     5521 tagagcatat tggcgaggtt gcggctaaaa aattaagttt aagttttggt aaagagtggt
     5581 acaagcaaag ctttgaagct tatgccaatt tagaaggttt tggagagcaa atggctttaa
     5641 gtctttgcga atttacgcgt gttaatcgca caagaattga tgagttttac aagcttttaa
     5701 atttgaaaat agaaaaactt gaaatcaaaa gcgatggtgt gatttttggt aaaacttttg
     5761 tgattacagg cactctttca cgcccaagag atgagtttaa ggctttgata gaaaagcttg
     5821 ggggtaaggt aagcggctcg gtttctaaaa agactgacta tgtgcttttt ggagaagagg
     5881 caggttctaa gcttagtaag gctaaagagc ttgaagtaaa atgtatagat gaaagtgctt
     5941 ttaatgagct tgttaaagaa tagttcttat attttaacgc ttttaagcct ttttggcttt
     6001 ttgctaactt ggcaaaggag tgctttttct ttattttttt taatttctat ttttttaaca
     6061 cttttttggg aattcttttt atttttaaag cttagaaaaa atattataaa agaagctact
     6121 ttgattaagg gaagtttgtt ttatcgtgtt agtatggggg atttttatct ttatattttt
     6181 agttttttct tggcgatttt tggacttgtt tctttatttt taaatttttt aaatcttgaa
     6241 aaaattgatt ttgtttttat atttataatt ttacctttat tgatgatatt tttaaaaaaa
     6301 gaattgcatt tgcaatttgt agataatgct tataatgatt ttagaatagt tgttatcgct
     6361 agttttttta ctgctttatt ttatgcattt tatgggcttt tttttactta caatgaactt
     6421 ttaaatttag aacttttttc taggaaaatc attgcctata agagtgcttc ttttgtttat
     6481 tttgattttt tatctgaatt tttacatttt gtttcaaatt taaaattttt tattttttct
     6541 tattttggat atttggggtt tagggcttta aattttattt ttgatttttt taattttttt
     6601 atgttttgtt ctcttttggc ttttgttttt aattttgttt tgaaaataaa gataaaaata
     6661 attgttttat ttttatgttt tatcatggtt ttaggaaatt attttttaaa agagcaaaga
     6721 aataatgcct taaaatccga acaagagcaa atacttttat ggatgaataa ttttaatttt
     6781 ttaaaaga
//
LOCUS       DAPOLW010000089         6787 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.089, whole genome shotgun sequence.
ACCESSION   DAPOLW010000089 DAPOLW010000000
VERSION     DAPOLW010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6787
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.089"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            13..2559
                     /locus_tag="ROE18_001278"
     CDS             13..2559
                     /locus_tag="ROE18_001278"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HDX3651451.1"
                     /translation="MSFMQEYNKLVEERAALGIPPLPLNANQTRELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLDSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDAAEVLKNIIFVHDNFHTIAELSKNNPHAKEVLQSWANADWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQTGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIIMGSTIAPIFFNTAQD
                     SGALPIICDVTNLEMGDEFEIHPYEGKIIKNGSTIAEFTLSPNTLLDEVRAGGRIPLI
                     IGRGLCTKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     ITLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNVPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEVGYENK
                     ATLARRAEKMREWLKNPTLLRADKDAKYAYIIDINLNNIKEPILACPNDPDDVATLSE
                     ILADDKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLIN
                     EGYYSIFGAAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSNEHKANIYRYLNFNEIENFKLEN"
     gene            2609..3847
                     /locus_tag="ROE18_001279"
     CDS             2609..3847
                     /locus_tag="ROE18_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDX3651452.1"
                     /translation="MKLLFTSFCCFASLMASDAINCDNIKNNKTLLNESSNLDYLNIA
                     SSCKESLKNQDFTKKLYAISNEIRGSNSSCNGVAYLPKLQQFDFLLLKIAIDPIAYQK
                     TLDTPENLEKKYDILKSYFRYWAYQSIGNFRLYKAFWQEYNNAIEPLEKYFESNFNFD
                     KGSNIYYTSNALNEFLNWAVGETKIYKDISPLAKIMSNKNYSVSYIQDFIFSNNPSQD
                     DLTIALQAALLNQREKEILELLIRFGARIDEGYESAIFYALESYENTNFLIQNGANVN
                     QANAFGKTPLFYAIEFNRLDIIKLLLDNGANVNQKYINNNEKLALSANIGSNTPYFIT
                     FCALEHTSKNVLMHAAAYGNVEILKLLISKGANFNAVDDLGFNALDFALSAGKKENAD
                     YLKSLGLKANENLFYGGSLE"
     gene            3844..4593
                     /locus_tag="ROE18_001280"
     CDS             3844..4593
                     /locus_tag="ROE18_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HDX3651453.1"
                     /translation="MKTAFITGASSGFGRACVEAFIQEGYKAIALARRKERLEELKNA
                     YKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MVDTNIKGFLYVAKAIIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            4590..6323
                     /locus_tag="ROE18_001281"
     CDS             4590..6323
                     /locus_tag="ROE18_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HDX3651454.1"
                     /translation="MNKFLVSLFLPLVAFANSSEAAANANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFTGVLSGTFLLSLSTNIFKAQHLTFVNYYNTTVESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFAKRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISNISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVRARTTGQIAP
                     LPKSGTLDTTELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASTNPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGLSVWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            6320..>6787
                     /locus_tag="ROE18_001282"
     CDS             6320..>6787
                     /locus_tag="ROE18_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HDX3651455.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTR
                     AELSFYHENDTLFYAMFDPKSKKKYIIEYLDFADEKICAFMPRLLEYLRQDNKLKEKL
                     FGVEFLTTKQELSITLLYHKNIEDIKSNLENLSNILHINLIARSKGKKLIFKTE"
BASE COUNT         2355 a         1040 c         1218 g         2174 t
ORIGIN      
        1 aaggagtaga aaatgtcttt tatgcaagaa tacaataaac ttgttgaaga aagagccgct
       61 ttgggtatac caccccttcc tttaaatgca aatcaaacta gagaactttg taaattactt
      121 gaaaatgaaa ataatgaaga gcttgcaaat cttttagaaa atagagtaaa tcctggtgtt
      181 gatgatgcag ctttagtaaa atgtgaattt ttagattcca tacttaaagg caaaatcagt
      241 gctccaaata tagacaaaaa aagagcctta agaatgcttg gaactatgct aggcggatat
      301 aatgttaaag ttttaatcga tgccttaaaa gatgaaaaca tagccaaaga tgctgcagaa
      361 gtgttgaaaa atattatttt tgtacatgat aatttccata ccatagctga acttagcaaa
      421 aacaatccac acgctaagga agttttacaa agctgggcaa atgcggactg gtttaataaa
      481 aaagaaaaac taccacaagt gattaaatgt atagttttta aagtagcagg ggaaacaaat
      541 accgatgatc taagccctgc aggagatgct tttacaagaa gcgatattcc tttacatgca
      601 aatgccatgc taaaggtaag acaaacagga tccttagaaa aaatcaaaga gcttaaaaaa
      661 agcggtcgcg aagtggttta tgtaggtgat gttgtaggaa caggttcaag tagaaaatcg
      721 gcaataaatt ccatacaatg gcacttagga aaagaaatag aaggtgtgcc aaacaagcac
      781 agcggtggta taataatggg ttcaactata gcaccgattt tctttaacac tgctcaagat
      841 agcggggctt tacctatcat ctgtgatgta acaaacttag aaatgggcga tgagtttgaa
      901 attcatcctt atgagggaaa aatcataaaa aatggctcta caatcgcaga atttacactc
      961 agtccaaaca ctctcttaga tgaagttaga gcaggaggaa gaatcccact tatcataggt
     1021 cgcgggcttt gtactaaggc tagagaattt ttaggaatgg aaagtgaaaa tatctttacc
     1081 aaacctgaac aacctaaatc ttcaagcggt ggttatacct tggctcaaaa aatgctaggt
     1141 cgtgcctgtg gagttgaagg tgtgcgtcca ggtatgtata tagaacctat aactttaact
     1201 gtaggctctc aagataccac aggtcctatg actagagatg aaattaaaga acttgcaagc
     1261 ctaggtttta atgcagactt tgttatgcaa agcttttgcc atacagctgc gtatccaaaa
     1321 gtaagcgatt caaatttaca taaaaccttg cccaatttca tgacaagtcg tggtggggta
     1381 agtttaaaac caggtgatgg agttatccac tcttggctta atcgttttgt attgccagat
     1441 accgtaggaa cgggcgggga ttctcacaca cgctttccta taggaatttc tttccctgca
     1501 ggaagtggac ttgtagcttt tgctgcggtt actggttcta tgcctttaaa tgtacctgaa
     1561 agtgttttag tgcgttttag tggagaattg caagccggag ttaccttaag agatttggtt
     1621 aatgctatac cttattatgc aatcaaacaa ggacaactta ccgttgaaaa gaaaaataag
     1681 aaaaatattt ttgcaggaaa aattttagaa atagaaggct tgccaaactt aaaagtcgaa
     1741 caagcttttg aacttagtga tgcaagcgct gaaagatctg cagctgcttg cagtgtggat
     1801 ttaagcatag aaagtgtaag cgaatatatc aaatccaata tctctttaat tgaagctatg
     1861 atagaagtag gatatgagaa taaagctacc cttgccagaa gggctgaaaa aatgagagaa
     1921 tggcttaaaa accctactct tttaagagca gacaaagatg caaaatatgc gtacattatc
     1981 gatattaatc ttaacaatat caaggagcca attctagctt gtccaaatga ccctgatgat
     2041 gtggcaacct taagcgaaat tttagccgat gacaagcgtc caaaaaatat agatgaagtt
     2101 tttgtaggtt cttgtatgac aaacatagga cattatagag ctttgggaga aattttaaaa
     2161 gataaaggca tacttaaaac cagactttgg gtagtgcctc caacaaaaat ggataaagca
     2221 caacttatca atgaaggtta ttacagcatc tttggcgcag caggtgctag aatagaagtt
     2281 cctggttgtt ctttgtgtat gggaaatcaa gcaagagtaa atgatggtgc tgttgtcttc
     2341 tcaacctcta caagaaactt tgacaatcgt atgggtatgg gtgctaaagt atatctagga
     2401 agtgctgaac ttgcagcagt ttgtgcgatt ttgggtaaaa ttccaagcaa ggaagaatac
     2461 ttacaaattg tcagcgaaaa actaagtaat gagcataagg caaatatcta tagatattta
     2521 aattttaatg agattgaaaa tttcaaactt gaaaattaat tcaaatttaa tactaaataa
     2581 caaaattaaa attttcaaag gaaaaatatt gaagttatta ttcacttcct tttgttgttt
     2641 tgcaagttta atggctagcg atgccattaa ctgcgacaac attaaaaata ataaaacatt
     2701 gctaaatgaa agttcaaatt tagattattt aaatatagct tcaagctgta aagaatcttt
     2761 aaaaaatcaa gattttacaa aaaaactcta tgcaatttcc aatgaaattc gcggaagcaa
     2821 tagctcttgt aatggtgtgg cttatttgcc aaaattacaa caatttgatt ttttattatt
     2881 aaaaatagct atcgatccca tcgcttatca aaaaacttta gatacacccg aaaatttaga
     2941 aaaaaaatat gatattttaa aatcttattt tagatattgg gcatatcaaa gcataggaaa
     3001 ttttagactt tacaaagctt tttggcaaga atacaataat gctatagaac ctttagaaaa
     3061 gtattttgaa agtaatttta attttgacaa aggcagtaat atttactata ctagcaatgc
     3121 cttaaacgaa tttttaaatt gggctgttgg tgaaacaaaa atttacaaag acattagtcc
     3181 tttagcaaaa atcatgtcaa ataaaaatta ttcagtatct tatatacaag attttatttt
     3241 ttcaaataat ccaagccaag atgaccttac tatagccttg caagcagcgc ttctaaatca
     3301 aagagaaaaa gaaattttag aacttttgat tcgttttggc gctaggattg acgaaggtta
     3361 tgaaagtgct attttttatg cattggaaag ttatgaaaat acaaactttt taatccaaaa
     3421 tggagcaaat gttaatcaag ccaatgcctt tggtaaaacc ccactttttt atgccataga
     3481 gtttaatcgt cttgatatca taaaactact tcttgataat ggagcaaatg ttaatcaaaa
     3541 atatattaat aacaatgaaa aattagcatt aagcgcgaac ataggttcaa atacgcctta
     3601 ttttattaca ttttgtgctc tagagcacac ttcaaaaaat gttttaatgc atgctgcagc
     3661 ctatggaaat gttgaaattt taaaacttct tatttcaaaa ggagcaaatt ttaatgctgt
     3721 tgatgatctt ggttttaatg cactcgactt tgcgctatca gcaggtaaaa aagaaaatgc
     3781 tgattatcta aaaagcttgg gtttaaaagc aaacgaaaat ctattttacg gaggcagttt
     3841 agaatgaaaa ccgcatttat tacaggagct agttcaggtt ttggtagagc ttgcgttgaa
     3901 gcttttatac aagaaggcta caaagcaatc gcccttgcta gacgcaaaga gcgtctagaa
     3961 gagttaaaaa atgcttacaa agataagatt tacacgcttt gcatagatgt aagaaatcaa
     4021 aaagaaatct ttgaggctat tgaaaattta cccaaagaat ttcaagaaat tgatgtgctt
     4081 tttaataatg caggtttagc tttaggggta gatgaatttg ataaattaaa ccttgaagat
     4141 attaacacta tggtagatac aaacatcaaa ggatttttat atgttgcaaa agctattatt
     4201 cctatacttc gcaaacaaaa aaatgcttat atttttaact taggttcggt tgcgggacgc
     4261 aatccttatt ttggaggcaa tgtgtattgt ggaaccaaag cctttgtagg acaattttca
     4321 ttggccttaa gaaatgatct tagaggaagc aatatcaaag taacaaacat tgctccagga
     4381 ctttgcaaaa ctgaatttag tgaagtgcgt tttaaaggag atatccaaaa agctgatgca
     4441 gtgtatgaaa atacgcaatt tatcagtgct aatgatattg ccaaagtggt aatgtctatc
     4501 attaacctac caagccatat taatgttaat gaaatcgagc ttatgccggt aacacaaact
     4561 tggaatggat tttatataga aagagatgaa tgaataaatt tttagtttca ttgtttttac
     4621 ctttagttgc atttgcaaac tcctcagaag cagctgcaaa tgctaattta tttggagctt
     4681 ttacgcttat accaccttta gttgctattg ctttagcctt tatcacaaaa gatgttattt
     4741 tatcgctctt tactggagtt ttaagtggaa cttttctact tagcctttct acaaatattt
     4801 ttaaagcaca acatttaact tttgtaaatt attacaatac tacagtagaa tctttttcaa
     4861 aaattatttc ctatatctta ggttcaactt cagatccagt aaatgcagga atcattttac
     4921 aaattctttg tataggtggt cttgtggcac ttatcacaaa aatgggaggt gcaaaagctg
     4981 tagcattaaa atttgccaaa agagccaaat cagctgtatc agctcaagtt aacacttggt
     5041 ttttagggct tttaatattt tttgatgact atgctaattt actaatcgta ggtccaatta
     5101 tgcgtccttt ggcagataaa tttaaaattt ctcgtgaaaa atttgccttt attatcgact
     5161 ctaccgcagc tcctgtggca ggaatagctg taatttctac ttggataggc ttagaagttt
     5221 ctttaattaa aaccgcttat gaacacatag gcattagcaa tattagtgct tttggaattt
     5281 ttgttgaaac cataccttat cgtttttata atatcttcat gctttttttt gtagtcatga
     5341 ctgcaatcat ggggcgtgag tttggttcta tgtacaaggc tgaagtgcgt gcaagaacca
     5401 caggacaaat tgctcctcta cctaaatcag gcacactaga tactactgaa ttagaagatc
     5461 agtttttagc accaaaagaa ggtattaaaa ttcgtgcttt tgatgctatt gttcctattt
     5521 ttactttaat cattttagct atattaggat tttattttaa tggacttagc actttagaag
     5581 gcgaagaact tgcaaaagca agtaccaatc ctttgtcttt tgaaactttt agagctgctt
     5641 ttggaaatgc tgattcttct gtggtgttat tccaagctgc tttgtttgct gctattgtag
     5701 cgatttttat cggggtgcgt cgtaaaattt tcaatcttaa agaagcggta gaaacttgga
     5761 tatatggctg gaaaaccatg atttttacca tagtattgct tttatttgct tggtcacttt
     5821 caagcatagt aaaagatcta ggaacttctt tatttatcac tagtttgctt gcagacaaat
     5881 tgcctgagtt tattttgcct gctactattt ttgcttttgc ttcagccatt tcttttgcca
     5941 taggaacaag ctatggaact atggggattt taatgccttt agctgtgcct ttagctcatg
     6001 aaatcgccaa aatcaatggt atggatgcaa acgctatgca tcattatatg gttattaata
     6061 taagctgcgt tttaacaggt gcgatttttg gaaaccattg ctcaccaatt tcagataatg
     6121 taatcctttc atctatgagt gcaaaatgcg atcatatgga gcatgtaaga acacaaattc
     6181 cttatgcttt atttatctgt ggcatttctt taatcgctgg atatattcct gtatctttag
     6241 gacttagcgt ttggtttgtc ttgcctttaa atttcatact tattgcactt ttactaagac
     6301 tcatcggaaa gaaagttcca tgagtcttga aaattttgga aattttctca ctttagatga
     6361 aaaacattct ttcataaaaa aatattttaa agaattttat acaaaggatt ttaaactttt
     6421 tgcttcaaaa gataaacatt atcgtacaag agctgaactt tcattttatc atgaaaatga
     6481 tacgcttttt tatgcaatgt ttgatccaaa aagcaaaaaa aagtacatta tagaatattt
     6541 agattttgct gatgaaaaaa tttgtgcttt tatgccaaga cttctagaat acttgcgtca
     6601 agataataaa ttaaaagaaa aactttttgg tgtagaattt ttaaccacaa agcaagaact
     6661 tagcataacc ttactctatc ataaaaatat agaagatata aagtcaaatt tagaaaattt
     6721 aagcaatatt cttcatatca acctcatagc aagaagtaaa ggcaaaaaac ttatttttaa
     6781 aacagaa
//
LOCUS       DAPOLW010000090         6714 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.090, whole genome shotgun sequence.
ACCESSION   DAPOLW010000090 DAPOLW010000000
VERSION     DAPOLW010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6714)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6714)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6714
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.090"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..1007
                     /locus_tag="ROE18_001283"
     CDS             <1..1007
                     /locus_tag="ROE18_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651456.1"
                     /translation="FLLPCDIKAINSVFVCSNENLKLLASLEKPLMKLRLNAMFRKNH
                     NLDFSDFKIRLARDLFCFALGLKLFENEYKFLSVKKIEEYQKDFYISALDEQVVVLEG
                     FEFINAKARELIFSKEDKNMARISYLVSRYKEKAFILELSKDYEDILLINKELNLLKL
                     CLPKHSKELYEEIKKDEIGARLLENFNKEFPLLDENFKLQNNFYSLLGLLGRVLNLGR
                     NLQESASELLKIADESKMPRGVKIDYRLKEDKSFDYTRTLRSAMSFMLAGVDSANIAY
                     GAVESLAYFLRDTYDELREKKQSDLALISGSLFEHKSLLKNTLKHLKNCQLSDVPLRI
                     "
     gene            988..3177
                     /gene="hypF"
                     /locus_tag="ROE18_001284"
     CDS             988..3177
                     /gene="hypF"
                     /locus_tag="ROE18_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HDX3651457.1"
                     /translation="MCHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGIE
                     IILACTQKECENFIENLKNHLPPLARIDQLIITQISISNYENFSITPSLENTKSTPML
                     SDFAFCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRFNTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFIQSAKFLKEGKILA
                     IKGMGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKGSLVATSANLSGESI
                     IKDEFNLCKKLDKVFDFYLDYDREIINASDDSIAQVVNGETMFLRTSRGLNPFYLERN
                     FNKKGTFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPHFSYAKEFEERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGY
                     GEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLEDKAKDF
                     LAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYD
                     KNLDFSYKLFVEKGQVNFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLL
                     SGGVFQNKTLLEILKAKNFDFFVPLKYPCNDSSIALGQMVHFLNLEK"
     gene            3254..3997
                     /gene="hypB"
                     /locus_tag="ROE18_001285"
     CDS             3254..3997
                     /gene="hypB"
                     /locus_tag="ROE18_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HDX3651458.1"
                     /translation="MCKDCGCSINSSHTHDHHHDHHHENPSLKESKTIEVISKILSKN
                     DEEAKHNRAHFNETNTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     ALRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSVTEGSDKPQKYPVMFKKADIVLITKADLAHHFDFDVKEATSLIKELNP
                     RADIITLDAKNDTNMELWYKVLKLKKELF"
     gene            3997..4278
                     /locus_tag="ROE18_001286"
     CDS             3997..4278
                     /locus_tag="ROE18_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HDX3651459.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            4262..5353
                     /gene="hypD"
                     /locus_tag="ROE18_001287"
     CDS             4262..5353
                     /gene="hypD"
                     /locus_tag="ROE18_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HDX3651460.1"
                     /translation="MNFIDEFRDKKSILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLKIAKQNLNKNIIFFAIGFETTTPMSALLLQKVIEEKIN
                     NVFFHINHITVPAPIEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCTVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNA"
     gene            5350..6324
                     /gene="hypE"
                     /locus_tag="ROE18_001288"
     CDS             5350..6324
                     /gene="hypE"
                     /locus_tag="ROE18_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HDX3651461.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEADIKSDCKALNKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEILGLCELFGYEAYELANEGTFILCVEKEDELKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            6324..6668
                     /gene="hypA"
                     /locus_tag="ROE18_001289"
     CDS             6324..6668
                     /gene="hypA"
                     /locus_tag="ROE18_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HDX3651462.1"
                     /translation="MHELSIVESLIELCEENALNNKACNVQEIYVKIGRLSGIEVDLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDQTSILEENVFKCPKCQSIEYKIIQ
                     GEDLHLMRLVMK"
BASE COUNT         2362 a          825 c         1311 g         2216 t
ORIGIN      
        1 attttttact tccttgtgat attaaagcta taaattcagt ttttgtttgt tcaaatgaaa
       61 atttaaaact tcttgcaagt ttagaaaaac ctttgatgaa gctaaggctt aatgctatgt
      121 ttagaaaaaa tcacaatctt gattttagtg attttaaaat cagacttgct agagatttgt
      181 tttgctttgc tttaggtttg aaactttttg aaaatgagta taaattttta agcgtaaaaa
      241 agatagaaga atatcaaaaa gatttttata tcagtgcttt agatgagcaa gtggtggttt
      301 tagagggttt tgaatttatc aatgctaagg caagagagct tattttttct aaagaagata
      361 aaaatatggc aagaatttct tatcttgtaa gccgttataa agaaaaagct tttattttag
      421 agctaagtaa ggattatgaa gatattttgc ttatcaataa agagcttaat ttacttaaac
      481 tttgcttacc aaaacacagc aaagaacttt atgaagagat taaaaaagat gaaattggtg
      541 caaggctttt agaaaatttt aacaaggaat ttcctctttt agatgaaaat tttaagcttc
      601 aaaacaattt ttattccttg cttggcttgc tgggtagagt gctaaatttg ggtagaaatt
      661 tacaagagag tgctagtgag cttttaaaaa tcgctgatga gtcaaaaatg cctcgtggag
      721 taaagattga ttatcgtttg aaagaagata aaagttttga ttatacaagg actttaagat
      781 ctgccatgag ttttatgtta gcaggtgtag atagtgctaa tatcgcttat ggagcggttg
      841 agagtttggc ttatttcttg cgtgatactt atgatgaatt aagagagaaa aagcaaagtg
      901 atttagcact tataagtgga tctttgtttg aacataaatc tttacttaaa aatactttaa
      961 aacatcttaa aaattgtcag ttaagcgatg tgccacttag gatataagat caaaatttca
     1021 ggtctagttc aaggggtggg ttttcgcccc ttagtttatg aactagcttt gaaatcaaag
     1081 ctttttggag aagtaagaaa tgatggtttt gggatagaaa tcatccttgc ttgcactcaa
     1141 aaagaatgtg aaaatttcat agaaaattta aaaaatcatc ttccaccttt agcaagaata
     1201 gatcagctta taatcacgca aatttcaatt tcaaactatg agaattttag cattactcct
     1261 tctttagaga atacaaaaag cacgcctatg ttaagcgatt ttgcgttttg taaggagtgt
     1321 aaaaaagaat tttttgatga aaaaaatcca cgctttttat atccttttat cacttgcaca
     1381 cattgtgggc cacgctttag tattataaaa agtcttcctt atgatagatt taatacctct
     1441 atgcaagaat tattgatgtg tgagttttgt aaaagcgaat acgaagatcc taaaaatagg
     1501 cgttttcatg cccagcctat tagttgtcct aaatgcaaaa tcaatgtttt tcttaaaaat
     1561 ccaaagggtg aaattttagc caaagatcaa gaagctttta tacaaagtgc gaagttttta
     1621 aaggaaggta aaattttagc cattaaaggc atgggcggtt ttcatctcat gtgtgatgcg
     1681 tttaatgaag aagctttaaa aactctaaga cttagaaaaa atcgccccaa aaaacccttt
     1741 gctttgatgt gtaaagattt acaaagtgct aaagaacttg cctttataga tgaaaaagaa
     1801 gaagctttgc ttggtggggt tttggctcct attgtgattt taaaggcaaa aaaagccttt
     1861 tctttaatcg ctcctgatgt tgataaaatc ggcattatgt tagcttatac acctttacat
     1921 cttttgcttt ttgagtattt taaaggaagc cttgtagcaa cgagtgcaaa tttaagcgga
     1981 gaaagtatta ttaaagatga gtttaatttg tgtaaaaaac ttgataaagt ttttgatttt
     2041 tatttggatt atgataggga aattatcaat gcaagtgatg acagcatagc tcaagtggta
     2101 aatggtgaaa ctatgttttt gcgtacttca aggggtttaa atccttttta tttggaaaga
     2161 aattttaata aaaaaggcac ttttttagct ttgggtgcgg aacttaaaaa tgaatttgtg
     2221 attttttatg aaaataaact tttaatttct ccttatatag gggatttgaa aagtcttgat
     2281 gtgcatgaga gattttttaa acttttagaa ttttttaaac aaaattatga tttgaaattt
     2341 gatgcgattt tgtgcgataa acacccgcat tttagctatg caaaagaatt tgaagaaagg
     2401 attaaaattt ctcatcatta tgcgcatttt tgtgcggctt attttgaata cgaagaaaat
     2461 tttgcaaaag atgaaaaggc tttagctttt atttgtgatg gaacaggtta tggcgaagat
     2521 ggtaaaattt ggggtggaga agtttttgta ggaaatttaa aagaatatga aagaattgca
     2581 cattttgaaa atttcactct tataaatagt gatattaaaa atatacaaaa tttagcctta
     2641 agtcttattt ttcattatga tttagaagat aaggctaagg attttttagc aaaaattcca
     2701 aaaattaaac ttaaaaatct taaaaaaatt tattctcatt ctaacttaca aacaagttct
     2761 ttaggacgca ttatcgatgc ttttggaagt attgttttta acttagaaaa aagttcttat
     2821 gaagctcaag ttggcttaat gtgtgaagct ttttatgata aaaatcttga tttttcttat
     2881 aagctttttg tagaaaaagg gcaggttaat tttaaaaatt taatcctagg ggctttgcaa
     2941 gatgaaaaaa ctaaggcgat tacaggtatg tttaatgcct tggcaaattt tatcatagat
     3001 tttagcaaag attatgattt aaaagtgctt ttaagtggag gagtttttca aaacaaaacc
     3061 ttgcttgaaa ttttaaaagc taaaaatttt gatttttttg tacctttaaa atatccttgc
     3121 aatgatagct ccatagcctt aggacaaatg gtacattttt taaatttaga aaaataaagc
     3181 aaatattcta aaaactcata attttttaat gcttttaagg ttaaaatgaa acaaaaaata
     3241 taaaggaaag aaaatgtgta aagattgcgg ctgttctata aattcaagcc atacgcatga
     3301 tcatcatcat gatcaccacc atgaaaatcc aagcttaaaa gaaagtaaaa ccatagaagt
     3361 gatttctaaa attttaagca aaaatgatga agaagctaag cacaataggg cacattttaa
     3421 tgaaaccaac acgctttgta tcaatttaat gagttctcca ggtagtggaa aaactacgct
     3481 tttagaaagc acgatcaagg ctttgaaaaa tgagcttaaa atcgctgtga ttgaagggga
     3541 tttggaaacc aataatgacg ccctaagagt aaaaaatgct ggagctttag cgtatcaaat
     3601 cactacaggg caaagctgtc atttggacgc ttttatggtg catgaggctt tgcatcattt
     3661 agccattgat gatgtggatt tgctttttat agaaaatgtt ggaaatttag tctgtcctgc
     3721 aagttatgat ttaggagagc atttaaatgt ggttttgctt tcggtaactg aaggaagtga
     3781 taaaccgcaa aaataccctg tgatgtttaa aaaggctgat atagttttaa tcacaaaggc
     3841 agatttagct catcattttg attttgatgt taaagaggcg actagcttga ttaaagaatt
     3901 aaatcctaga gcagatatta tcacccttga tgcaaaaaat gacaccaata tggagctttg
     3961 gtataaggtg cttaaactta aaaaggagct tttttaatgt gtttgtctat accttctgaa
     4021 attttagaaa tcgatgagtt aaacaatgct ttagtgcaaa ctttaggcgt gaaaagaaaa
     4081 gtgaatttag atttgattga tgagccttta aaacaaggcg attatgtctt aatccatgta
     4141 ggcgttgcca tggaaaaaat cgacaaagaa gctgcactag aaagcattaa aacctatcaa
     4201 gaaatagtag aaaaaatgaa tagtggagag ataaaaagtg atgaggggga tttaggttta
     4261 aatgaatttc atcgatgaat ttagagataa aaaaagcatt ttagctttaa aaaaactcat
     4321 agaacaagaa cttaaaaatc ctatcaacat catggaaatt tgcggtgggc atacgcatag
     4381 catcatgaaa tatgccctgc cttctatttt gccaaaggaa attaacttca tccatgggcc
     4441 aggatgtcct gtttgtgtta tgccaagagt tcgcattgat acagctatca agttagcctc
     4501 tatgaaagat acgatttttt gtactttagg agatctttta agggtgcctg gaagtgaaat
     4561 ttctttactg gatttaagag ctaaaggggc tgatgttaga gcgctttatt ctccgcttga
     4621 ggttttaaaa atcgctaagc aaaatttaaa caaaaatatc atcttttttg ctataggttt
     4681 tgaaaccact acgcctatga gtgctttact tcttcaaaag gttatagaag aaaaaataaa
     4741 taatgtcttt tttcatatca atcatatcac agttccagca cccatagaag cgatcatgaa
     4801 tgatgaaaat gtaaaaatca atgctttttt aggtccttct catgtgagtg tgataacagg
     4861 ttatggtatt tatgagcctt tagcagcaaa atttaaaacc cctatagcgg tgagtggttt
     4921 tgagccagtt gatattttag aaagtgtgtt aaatatcata aaacaaagca atgaaggcac
     4981 ttttaaagtg tataatcaat acaaaagagc cgtaagcaaa gaaggcaatg ttaaagcaca
     5041 aaatttagta aaaaaatact ttagggtgtg tgattttgaa ttccgtggct taggacttat
     5101 taaagatgga ggcttggagt taaaagaaga atttagcgct tacgatgcga gtaaaaaatt
     5161 tgattgtacg gttcaaagta aaaatgaaag caaagcctgt atttgtgggc aaattttaag
     5221 aggtttggcc aagccttatg attgtaaagt ttttggcaag gcttgtacgc caagaagtcc
     5281 tataggaagt tgtatggttt ctggcgaggg tgcttgtgcg gcgtattata aatactcaaa
     5341 ggtgaatgca tgaaaaatat ttccttagcc cacggaggcg gtggagaaga gatgaatgag
     5401 cttttaacta agctttttaa gatctttgat aatgaaattt taaacgcaaa taatgatgca
     5461 gcgattttgg gaaatttggc tttaagcacg gattcttttg ttttaagtcc gattttttta
     5521 gatgaagagg ttaatatagg taaactttgt gtttgtggtt ctattaatga tgttttgatg
     5581 gtgggtgcta agccaaaata tctaagctta gggcttatct tagaagaagg ttttgagcta
     5641 gaaaaattag aacgtatttt aaaaagcatt aaagaagaat gtgaaaaatg tggagttatg
     5701 ttagtttgtg gcgatactaa agttgttcct aagggtaaag cagatgaaat ttatatcaac
     5761 actacagcct taggtgaaat tatttctaaa aaagaaagta aaaatatcaa agcagggctt
     5821 agcatacttc tttcaggcga tataggaagg catggagcta gtgttttaat caaaagaaat
     5881 gagctagaag ctgatattaa aagtgattgc aaggctttga ataaagaggt tttagagctt
     5941 ttagaaaaag atataaaggt tgtggccatg agagatgcta ctcgcggggg gcttagtgcg
     6001 gttttaaatg agtgggcaaa gcaaagtgga aatgatcttt tgatctttga agaaaaaatc
     6061 atcgttcaag atgagatttt aggactttgc gagctttttg gttacgaagc gtatgagctt
     6121 gcaaatgaag gcacttttat actttgtgtg gaaaaagaag atgagttaaa agccttggaa
     6181 attctaaaaa aatacaatgt aaatgcgagt attataggag aagttttaga agagaaaaaa
     6241 gcacgcgtga tcttacaaaa cgcttatgga gcaaaacgct ttttagaaag tcctaaaggc
     6301 gaacttttac caagaatttg ctaatgcacg aattaagtat agtagaatct ttaatcgaac
     6361 tttgcgaaga aaatgcctta aacaataagg cttgtaatgt gcaagaaatt tatgtaaaaa
     6421 tcgggcgttt aagcggtata gaagtggatc tttttaagcg ttgttttgaa acttttaaag
     6481 aaaactcaaa tatttgcaaa aatgctaaac tttttataga gcttgctccg cttgaaattt
     6541 tatgcttaaa atgcgatcaa acaagtattt tagaagaaaa tgtttttaag tgtcctaaat
     6601 gtcaaagtat agaatataaa atcatacaag gtgaggactt acatcttatg cgacttgtga
     6661 tgaaataata tatttggcgt ttttgttaca atagtaaata ttttatcgat atta
//
LOCUS       DAPOLW010000091         6703 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.091, whole genome shotgun sequence.
ACCESSION   DAPOLW010000091 DAPOLW010000000
VERSION     DAPOLW010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6703)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6703)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6703
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.091"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..379
                     /locus_tag="ROE18_001290"
     CDS             <1..379
                     /locus_tag="ROE18_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF814 domain-containing protein"
                     /protein_id="HDX3651463.1"
                     /translation="LLPKKNSKKNQDHKQEDLVANFYFNEFKICVGKNEKGNEFLLKN
                     AKKDDLWLHVRDIPSAHTLIVSNKQKISLDVIEFAARLCVSFSKLKKGSYWVDYTLKN
                     FVKVQQKAFVNYTNFKSINITKD"
     gene            381..719
                     /locus_tag="ROE18_001291"
     CDS             381..719
                     /locus_tag="ROE18_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651464.1"
                     /translation="MPVSPLGNINYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            728..1453
                     /locus_tag="ROE18_001292"
     CDS             728..1453
                     /locus_tag="ROE18_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HDX3651465.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVVGYLVYKKASLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSPTSPNKTLEGVI
                     GGLICASVIGTILGVFVYSFWLSLFCSFFVAIFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVALL"
     gene            1450..2520
                     /locus_tag="ROE18_001293"
     CDS             1450..2520
                     /locus_tag="ROE18_001293"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HDX3651466.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIPISALACGDNIALLNEQIARF
                     KPKFVSIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGSFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     RYKIKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAVDFSKMPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDIAKCIFKALDHFGV
                     PKISSIEEVFEYDFKTREYLRS"
     gene            2522..3916
                     /locus_tag="ROE18_001294"
     CDS             2522..3916
                     /locus_tag="ROE18_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HDX3651467.1"
                     /translation="MKFFLTILFFITSIFALELDFSVGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFASISPKDPD
                     YKTVQRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASK
                     YPDLENIATQTVNSVNSSLADPKHAYHLKNTKTQELGDTEMLKALTYFVISNHKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPQGVDKAINKELEVKLFDDR
                     ILLSLKNPRKVINYVPFPVNKELNYNTSNELTAVIAEGNSFYIQYGNRFQTRLYPEYL
                     EFSDAFNEVTFQVDGNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHSKDESGILV
                     HKKNMQTQYSLDMAGKIYRAEFYELRGANLQQLLEANINSKLIKNAKNLDLNTLKMAR
                     SKDKFLGSILVEFE"
     gene            3913..4920
                     /gene="tsaD"
                     /locus_tag="ROE18_001295"
     CDS             3913..4920
                     /gene="tsaD"
                     /locus_tag="ROE18_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HDX3651468.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLECKFHKKISQELDHSIYGG
                     VVPELAARLHSEALPKMLKQCKEHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDMGILLVSGGHTMVLYLKDDASLELLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNTPLKHSKELAFSFSGLKNAVRL
                     EILKHENLNEDTKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASANLNLRS
                     RLQNLCQKYNANLKLVPLKFCSDNALMIARAAVDAYEKKEFVSIEEDILSPKNKNFSR
                     I"
     gene            4921..5436
                     /locus_tag="ROE18_001296"
     CDS             4921..5436
                     /locus_tag="ROE18_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HDX3651469.1"
                     /translation="MKKAFTILELVFVIVILGILAAIALPKMSSSKHEAEVSKSLNNL
                     KTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSNFNGIKEVNFRVGDDKECLKLVF
                     INKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
                     ASKTYFLIGGM"
     gene            5436..6686
                     /locus_tag="ROE18_001297"
     CDS             5436..6686
                     /locus_tag="ROE18_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDX3651470.1"
                     /translation="MIVSKTYEIDSCDDVELDIKRESKLEFKLCFDDEKEIKALVFII
                     PGLGGDVDENYREHLAEFVAGEFNVAVASVNYHCIGNRPQTGSTFYLDDIDKLILKVS
                     CEAADIKLPYDVDKIQDYKQMSEIFHFVNNQIVEGKQKGNFTPNYFLNLHVSLQPAKN
                     EYQNFGIMQAQDLLNVALYLKKHAPFDTMGGGIPVIMIGSSHGGYLAHLAAKIAPWLI
                     DGVIDNSSYAKFLWRLIGFGKEMDFVQYSEFSTFDFFHHIKTHCSTKTFWTSNSSSNN
                     FFSIPRRMIRYILEPKHLEIQTNYPKPCYTSYHSFYDKEIAPPDEKLELYKYLEQFGF
                     DAELYMIKNPDQVDGRFIKSLEHGMGMSIKTLISKELPLMLEKIKQNPKKDCKEKYIS
                     YPCEDLLYKFSEKDDKISLKIDKI"
BASE COUNT         2391 a          887 c         1218 g         2207 t
ORIGIN      
        1 tttactacct aaaaaaaata gcaaaaaaaa tcaagatcat aaacaagaag atcttgtggc
       61 aaatttttat tttaacgagt ttaaaatttg cgtgggtaaa aatgaaaaag gcaatgaatt
      121 tttacttaaa aatgctaaaa aagatgattt gtggcttcat gtaagggata ttcctagcgc
      181 acatactttg attgtatcaa acaagcaaaa aatcagcctc gatgtgatag aatttgctgc
      241 aaggctttgt gtaagctttt ctaagttaaa gaaaggttcg tattgggtcg attatacttt
      301 aaaaaatttt gttaaggttc agcaaaaggc gtttgtaaat tatacaaatt ttaaaagtat
      361 taatatcaca aaggattaaa atgccagtta gccctttagg aaatatcaat tatataaatc
      421 agaatatggc ttatccagct acacaagcaa gcaatgagct tgcaaaagaa ggttttgcag
      481 ctacgctaaa tatggctgaa tttaatgaaa aagaaaaaac tttaaacaag cttgagaaag
      541 tcaatgagac tcatgaaatc aaagaagaga tcaaagaaaa agccgaacaa gaagaaaaaa
      601 agaaaaaaca caatcaagaa gctaaaacca gcgatgatga gaaaaatgaa gaagatgagt
      661 ctaaagatcc aaattttaaa gacgcacaaa gcattcatcg cttagatatt agtatataag
      721 gaaaaatatg tttaatacaa ctagaattat ttcagctctt gtgatgatag gggctattat
      781 tattatcgcg ttgattgatc aattttttat caattttatc gtttttgcgg ttttattgta
      841 tctatctttt agtgaagcaa aaaaactttt tgctttagaa aatatctcta ttatcccttt
      901 ggctatagct tttattttgg gaagtttatc gcataaagct ttgctttttg ggattttagc
      961 tttgttatta gtcgttggat atttggttta taaaaaggct tccttaaaac cagctcttat
     1021 ttatatttat cctagtttgc ctattttagc actttggcaa gtgtatttag atcagggtat
     1081 gtttgcactt ttttggctta tcattatcgt tgcagcttgt gatagtgggg cgtattttat
     1141 cggaaaactt atgggtaaaa ctcctttttc tccaacaagt ccaaacaaaa ccttagaagg
     1201 tgttataggt ggcttgattt gtgcgagtgt tattggaact attttgggag tttttgttta
     1261 tagtttttgg ctttctttgt tttgttcgtt ttttgtagcg atttttgcag tgattggaga
     1321 tttgcttgag agttatttta aaagagaagc aggtgtaaaa gatagtggag atcttatccc
     1381 tggtcatggg ggcgtgcttg ataggatcga tgcggtgatc attgctgctt ttgtgatggt
     1441 tgctctttta tgatactttt tggaagtacg ggcagtatag gagtaaatgc tcttaaactt
     1501 gctgctttaa aaaacattcc catttctgct ttagcttgtg gggataacat cgctctttta
     1561 aatgagcaaa tcgcaaggtt taaacccaaa tttgtttcca taaaagattc aaaaaataag
     1621 catttagtta aacacgatag agtttttata gggcaagaag gtttagagca aattttaaca
     1681 gaatgtcaag ataagctttt actcaatgcc attgtaggtt ttgcaggact taaaagcact
     1741 ttaaaggcta aagagcttgg caaaaacata gctttagcta acaaagaaag tcttgtagta
     1801 gctgggagtt ttttgaaagg ggctaaattt ttacccgttg atagtgagca tgcagcttta
     1861 aaatttttac tcgaaggtaa aaaaaatata gcaaaacttt atatcacagc aagtggtgga
     1921 gctttttata ggtataaaat caaagattta aatcaagtca gtgtcaaaga tgctttaaaa
     1981 catcctaatt ggaacatggg agcaaagatc actatagata gtgcgactat ggcaaataag
     2041 ctttttgaga ttatagaggc ttatcattta tatgatttta aagaaattga tgctttaata
     2101 gaaccaagat ctttagtgca tgcaatgtgt gaatttaaaa atggagctag cacggcgtat
     2161 ttttcaaaag cagatatgaa actagctatt tcagatgcta tatttgaaaa acaagatacg
     2221 cctattttag aggctgttga ttttagcaaa atgcctgctt taaaatttca tccaatcagc
     2281 acaaaaaaat atcctatttt taagcttaaa aatacatttt taaaagagcc aaatttaggt
     2341 gttatcatca atgctgctaa tgaagttggt gtttataatt ttttagaaaa taaaagtgga
     2401 tttttagaca ttgctaaatg catttttaaa gcccttgatc attttggagt acctaaaatt
     2461 tcaagcatag aagaagtttt tgagtatgat tttaaaacaa gagagtattt aaggagttaa
     2521 aatgaaattt tttttaacaa ttttattttt tataacaagc atttttgctt tagagctaga
     2581 ctttagcgta ggagaaaatg gaaaaagtct agatgataat aatacagttt taatttttgg
     2641 tggaattcaa ggcgatgagc ctggtggatt tcatgcggca agtttgcttt tgagtgatta
     2701 taatatcact aagggtaaga ttatagtggc tccaaattta gcttttgata gcattatcaa
     2761 gcgttctcgt gggaataatg gggatttaaa ccgtaaattt gcaagcatta gcccaaaaga
     2821 tcctgattat aaaaccgttc aacgcattaa agagcttatt ttacttcctg aagttagtat
     2881 ggtgatcaat cttcacgatg gttggggttt ttataaaccc acttatatcg atgcgatgca
     2941 aaatcctaag cgttggggaa attcaagcgt gattgataca agcgaaatca atgcaagcaa
     3001 ataccctgat cttgaaaata tcgccactca aaccgtaaat agtgtcaatt cttcgcttgc
     3061 cgatccaaag catgcttatc atcttaaaaa caccaaaacc caagagcttg gcgatacgga
     3121 aatgcttaaa gctttaactt attttgtgat ttcaaatcac aaagccgctt ttgcaaatga
     3181 agcgagtaaa aatctgcctg taaatttaag agcttattat catcttttgg caattgaaaa
     3241 ttatttaaaa actgcaggaa ttgaatttag cagagatttc gaactcactc cacaaggagt
     3301 tgataaagcc ataaataaag agcttgaagt aaaacttttt gatgatagaa ttttactttc
     3361 tttaaaaaat ccaagaaagg ttatcaacta tgtgcctttt ccggtaaata aagagttaaa
     3421 ttataacaca agcaatgaac ttacggctgt tatcgcagaa ggaaattctt tttatatcca
     3481 atatggcaat cgttttcaaa caagattata tcctgagtat ttagaattta gcgatgcttt
     3541 taatgaagta acttttcaag ttgatggcaa tgaaaccaca gttccttttg gaaccaaggt
     3601 aaaagtaaaa gagaattttc ttattccaaa gatagctaat gtgcgcgtaa atatcatagg
     3661 ctttgatcac tcaaaagatg aaagtggtat tttagttcat aaaaaaaata tgcaaacaca
     3721 atactcttta gacatggcag gtaaaattta tagagcggaa ttttatgagt taagaggtgc
     3781 aaatttgcaa caacttttag aggcaaatat caatagcaag ttgatcaaaa acgctaaaaa
     3841 tttggattta aatactctta aaatggcaag atcaaaagat aaattcttag gttctatttt
     3901 agtggaattt gaatgaaaaa tcttatccta gctatagaaa gttcttgtga tgatagttct
     3961 atagctatca ttgataaaaa caccttagaa tgtaaatttc ataaaaaaat ttcccaagaa
     4021 ttagatcata gtatctatgg gggagtggta cctgaacttg ctgcaagact tcatagcgag
     4081 gctttaccaa agatgcttaa gcaatgcaaa gagcatttta aaaatctttg tgccatagct
     4141 gtgacaaatg aacctggact tagtgtttct ttgctcagtg gaatttctat ggcaaaaacc
     4201 ttagcaagtg cgctaaattt acccttaatc cctataaatc atcttaaagg tcatatttat
     4261 agtctttttt tggaagaaaa aatttcttta gatatgggaa ttttgcttgt tagtggtggg
     4321 cataccatgg tgctttatct taaagatgat gcaagcttag agcttttagc aagtacaaat
     4381 gatgatagct ttggagaaag ttttgataaa gtggctaaaa tgatgaattt aggttaccct
     4441 ggtggggtca tcatagaaaa tttagcaaaa aatgccaaac ttaaaaatat ctcttttaac
     4501 acacctttaa agcattctaa agaactcgct ttcagttttt cagggcttaa aaatgcagtg
     4561 cgtttggaaa ttttaaaaca tgaaaattta aatgaagaca caaaagcaga aatagcttat
     4621 gcctttgaaa atacagcttg tgatcatatc atggataaat tagaaaaaat ttttaatctt
     4681 tataaattta aaaattttgg cgttgtaggt ggagctagtg caaatcttaa cttgcgttcg
     4741 cgtttgcaaa atttatgtca aaaatataat gcaaatttaa aactagttcc tttaaaattc
     4801 tgctctgata atgctttgat gatagcaaga gccgcagttg atgcttatga aaaaaaggaa
     4861 tttgtaagca tagaagaaga tattttaagc cctaaaaata aaaatttttc aaggatatag
     4921 atgaaaaaag cttttaccat attagaactt gtttttgtga ttgttatttt aggaatttta
     4981 gccgctattg ctttaccaaa aatgagttca agcaagcatg aagccgaggt tagtaagtct
     5041 ttaaataacc ttaaaacttt gatcaatgat ataagcattt atactttgaa aaatgatcat
     5101 ttaagctcta taaaaacgat gagtaatgta agcggggttg aaaatgttga tcttagtaat
     5161 tttaacggta taaaagaagt aaattttcgc gtaggcgatg ataaagaatg cttaaaactt
     5221 gtttttataa ataaagctga ttttatactc atgggaattt caagcaatga agcaagtaaa
     5281 aatgctatca tcaacgcagc taatcaaagc catgaagatt tagaaaatat agactttaca
     5341 agctcttcta gtaataaagc ttgtgtgatt ttaagtaaga atgaaaattt taaaaaccta
     5401 gcgagtaaaa cttatttttt aataggggga atgtaatgat agtgagtaaa acttatgaga
     5461 tcgactcttg tgatgatgta gaacttgata taaaaagaga atcaaagctt gaatttaagc
     5521 tttgttttga tgatgaaaaa gaaataaaag ctttagtgtt tatcatccct gggcttggtg
     5581 gagatgtgga tgaaaattac cgtgaacact tagctgaatt tgtagcaggc gaatttaatg
     5641 tggctgtagc aagtgtgaat tatcattgta taggtaatcg tcctcaaact ggatcaactt
     5701 tttatttaga tgacatagac aagcttattt taaaagtaag ttgtgaagct gcggatatca
     5761 agcttcctta tgatgttgat aaaattcaag attataaaca aatgagtgaa atttttcatt
     5821 ttgtaaataa tcaaatagtt gaaggtaagc aaaaaggtaa ttttacacca aattattttc
     5881 taaatttaca tgtgagtttg caacctgcaa aaaacgaata tcaaaatttt ggaatcatgc
     5941 aagctcaaga tcttttaaat gttgcacttt atcttaaaaa acatgctcct tttgatacta
     6001 tggggggggg tataccagtt atcatgatag gtagttctca cgggggatat ttagcgcatt
     6061 tggcggctaa gattgcacct tggctaatag atggagttat agataactca agttatgcta
     6121 aatttctttg gcgtcttata ggttttggaa aggaaatgga ttttgtgcaa tatagcgaat
     6181 tttctacttt tgattttttt catcatatta aaacacattg ctcgacaaaa actttttgga
     6241 caagtaattc aagttcaaat aatttttttt caataccaag gagaatgata agatatatct
     6301 tagaaccaaa gcatcttgaa attcaaacaa attatccaaa accatgctat acaagttatc
     6361 attcttttta tgataaagaa atagctccac ctgatgaaaa attagaactt tacaaatatt
     6421 tagaacaatt tgggtttgat gcagagcttt atatgataaa aaatccagat caagttgatg
     6481 gtagatttat taaaagttta gaacatggca tgggaatgtc tataaaaact ttaatttcca
     6541 aagaacttcc tttaatgcta gaaaaaataa aacaaaatcc aaaaaaagat tgtaaagaaa
     6601 aatacatctc ttatccttgt gaggatttgt tgtataaatt tagcgaaaaa gatgacaaaa
     6661 tatcactaaa aatagataaa atttaaggaa atctaatgac cat
//
LOCUS       DAPOLW010000092         6613 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.092, whole genome shotgun sequence.
ACCESSION   DAPOLW010000092 DAPOLW010000000
VERSION     DAPOLW010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6613)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6613)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6613
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.092"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            38..1324
                     /gene="aroA"
                     /locus_tag="ROE18_001298"
     CDS             38..1324
                     /gene="aroA"
                     /locus_tag="ROE18_001298"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HDX3651471.1"
                     /translation="MKIYKLQTPVNAILENIAADKSISHRFAIFSLLTQEENKAQNYL
                     LAQDTLNTLEIIKNLGAKIEQKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLA
                     GISGFFVLSGDKYLNNRPMRRISKPLTQIGARIYGRNEANLAPLCIEGQKLKAFNFKS
                     EISSAQVKTAMILSAFRADNVCTFSEISLSRNHSENMLKAMKAPIRVSNDGLSLEINP
                     LKKPLKAQNIIIPNDPSSAFYFVLAAIILPKSQIILKNILLNPTRIEAYKILQKMGAK
                     LEMTITQNDFETIGEIRVESSKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINA
                     KELRVKESDRIAVMVENLKLCGVEARELDDGFEIEGGCELKSSKIKSYGDHRIAMSFA
                     ILGLLCGIEIDDSDCIKTSFPNFIEILSNLGARIDY"
     gene            1314..2147
                     /locus_tag="ROE18_001299"
     CDS             1314..2147
                     /locus_tag="ROE18_001299"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HDX3651472.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQALSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGASTPDWIIQKVIAKIENFRI
                     N"
     gene            2279..3949
                     /locus_tag="ROE18_001300"
     CDS             2279..3949
                     /locus_tag="ROE18_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HDX3651473.1"
                     /translation="MSEVNKKVQDGVDDYLEEEDFGQLLEAFDKSREEATTEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQGDNSKLLFNVGDSIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDIGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSTKELSSSPV
                     QEYAKIHKVGDIVKGAIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRIKEREVLNEINNDDKVTLGDIIKDQLA"
     gene            3949..4437
                     /locus_tag="ROE18_001301"
     CDS             3949..4437
                     /locus_tag="ROE18_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651474.1"
                     /translation="MKKYITISILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGHSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            4434..6017
                     /locus_tag="ROE18_001302"
     CDS             4434..6017
                     /locus_tag="ROE18_001302"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HDX3651475.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKFPKDELMQMLSD
                     IEVAITRSSTDVDVNFLNHAKKLKALVRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKSGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNISVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            6004..>6613
                     /locus_tag="ROE18_001303"
     CDS             6004..>6613
                     /locus_tag="ROE18_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDX3651476.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLADFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLVSYEFFYKNQKLEISNLDYELL
                     KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFP"
BASE COUNT         2521 a          788 c         1203 g         2101 t
ORIGIN      
        1 ttttaaatac tcttaaaaat ttgggtcttg atttaagatg aaaatttaca aattgcaaac
       61 ccctgtaaat gctatacttg aaaatatagc agcagataaa agcatatctc atcgttttgc
      121 tatattttcg cttttaacac aagaagaaaa taaggctcaa aattatctct tagctcaaga
      181 tactttaaac actcttgaaa ttataaaaaa tcttggagct aaaattgaac aaaaagattc
      241 ttgcgtcaaa attatacccc ctaaagaaat tttatctcca aattgtattt tagactgtgg
      301 aaattcagga actgctatgc gtttgatgat aggattttta gcaggaattt ctggtttttt
      361 tgttttaagt ggagataagt atttaaacaa tcgtcctatg agaaggataa gcaaaccact
      421 tactcaaata ggcgctagaa tttatggaag aaatgaggca aatttagctc cactttgtat
      481 agaaggtcaa aaattaaaag cttttaattt taaaagcgaa atttcttcgg ctcaagttaa
      541 aacagctatg attttatctg cttttagggc tgataatgta tgcactttta gtgaaatttc
      601 tcttagtcga aatcatagtg aaaacatgct aaaggctatg aaagctccaa taagggttag
      661 taatgatggc ttaagtcttg aaataaatcc tttaaaaaaa cctttaaaag ctcaaaatat
      721 aatcattcct aatgatcctt cttcggcttt ttattttgtt ttagcagcta ttattttacc
      781 taaatctcaa attattttaa aaaatatttt gcttaatcct actcgtatag aggcgtataa
      841 aattttgcaa aaaatgggtg ccaaacttga aatgacaata actcaaaatg attttgaaac
      901 tattggtgag atcagggtgg agtctagcaa gcttaatggc atagaagtta aagataatat
      961 cgcttggtta atagatgaag cgcctgcttt ggctatagct tttgctttgg ctaagggtaa
     1021 atctagttta ataaatgcta aagaattacg cgttaaagaa agcgatagga ttgctgtgat
     1081 ggttgaaaat ctaaagcttt gtggtgttga agctagagaa cttgatgatg gttttgaaat
     1141 agaaggtgga tgcgaactaa aatcttcaaa aattaaaagc tatggagatc accgtattgc
     1201 tatgagtttt gctattttag gtttgctttg tggaatcgag attgatgata gtgattgtat
     1261 aaaaacttct tttccaaatt ttatagagat tttatcaaat ttaggagcta ggattgatta
     1321 ttgaattagc aaaaaactat ggtttttgtt ttggtgttaa aagagctatt aaaaaagcag
     1381 aacaaataaa agatgctgca actataggcc ctcttattca caataacgaa gaaatttctc
     1441 gtttgcaaaa aaattttaat gtcaaaactt tggaaaatat acaagcttta agtaatgaaa
     1501 aaaaggctat tataagaact catggtatta caaagcaaga tttagaagaa ttgagaaaaa
     1561 aagatataga aatttttgat gccacttgtc cttttgttac aaaaccacaa caaatttgcg
     1621 agcaaatgag taaggagggt tatgaagttg ttatttttgg agatgaaaat catcccgaag
     1681 ttaaaggagt caaaagttat gtaagtacaa aagcttatgt agttttggat aaaaaagaac
     1741 ttcaaaatat aaaacttcct aataaaatag ctgtagtaag ccaaacaact aagaagcctg
     1801 agcattttat ggagatagta aattttttaa tacttaaaac caaagaagta agagttttta
     1861 acactatatg tgatgcaacc tttaaaaatc aagatgccat taaagaactc tcgcttaaaa
     1921 gtgatgttat ggttgttgta gggggtaaaa actcagccaa tacaaaacaa ctttttttga
     1981 ttgcaaaaac caattgtgaa gatagctatc taattgaaac cgaagaagag ttaaaaaaag
     2041 aatggttttt agataaaaaa cattgtggca ttagtgcagg tgctagtact cctgattgga
     2101 ttatacaaaa agttatcgcc aaaatagaaa attttagaat taattaaaaa atgtttttaa
     2161 atagaataaa aaagtcaaaa atttaaaaaa aattaacaaa aataaaaaaa cttaacacta
     2221 attaaagaaa aataaggtaa aatcaatcaa tttctaaaaa ttattttaaa ggaccataat
     2281 gagcgaggtg aacaaaaaag ttcaagacgg cgtagatgat tatcttgagg aagaagattt
     2341 tggacagctt ttagaagctt ttgataaatc aagagaagag gctacaacag agggtgtgat
     2401 tgtagagatc aaaaatgatg aagtttatgt agatataggt aaaaaatctg aaggtatttt
     2461 agctcttagc gaaatacaag gtgacaattc taagctattg tttaatgtag gtgatagtat
     2521 taaagttgct gttatgggtt ctcgtggtgg cagatcttta ctttctcata aaaaagcttt
     2581 gagaaaagaa aaagttattg aatttattaa aaactatcaa gaaaatcaag atgatatttt
     2641 taccgtaaaa gtagttggaa aaaataaagg cggattgata gttgttgatg aaaatgatgt
     2701 tgaatttttc ttaccaaaat ctcaatatgg ctttaaagaa acaaataata ttataggcaa
     2761 aacgtttaaa gttaaaatta ttaaaatcga caaagatgag caaagtatca ttgtttctcg
     2821 taaaaaaact ttagacgatg agagaagaaa acgaaaagaa ttgatcaata atgtagcaca
     2881 acaagaagat ttaattgaag gtattgtaaa aaaaattacc acttatggta tgtttgtaga
     2941 tgtaggaggt gttgatggcc ttgttcatta cagcgaaatt tcttacaaag gacctgtaaa
     3001 ccctggaaca ctttataaag agggcgataa agttccagtt aaagtaataa agtatgataa
     3061 agaacgcaaa catttatcct tatctataaa agcggcttta cctgatccat ggagcgagat
     3121 aaaagatact cttgatatag gtgataccat taaagtaata gtatcaaata tagagcctta
     3181 tggtgctttt gtggatttag gaaatgatat agaaggattt ttacatatca gtgaaatttc
     3241 ttgggataaa aatattaaaa atccaaaaga ttatatcaat aaaggtcaag aaattgatgt
     3301 tgaagtaatt gaaatcaatc caaatgaaag acgcttaagg gtttctttaa gaaatttact
     3361 ttctagacct tttgatgaat ttatgaaatc ttacaaaatt gcagatgtgg ttgaaggaga
     3421 aattacctca gtaacttctt ttggtgcatt tgttaaactt ggtggtattg aaggtttatt
     3481 gcataatgaa gatgcttctt gggatagaaa cgataaatgc aaagacaaat tctctcaagg
     3541 ggataaaatc aaggtaaaaa ttatcaaaat agatgaagaa aaccaaaaaa tatcattaag
     3601 tacaaaagaa ttaagcagtt ctccagtgca agaatatgct aaaattcata aagtcggcga
     3661 tattgtaaaa ggtgctatcc gtgatattaa agattttggt gtttttgtag agctaagtaa
     3721 aaatgttgat gctttaattc ataaagaaga tataagcact tctatgcttg aaaatttaaa
     3781 aattggcgac gatattgaag ctgctatagt ttttattgat gaaaagaaaa atagaattcg
     3841 cctaagtgtt aaaaatcttg ttagaataaa agaaagagaa gttcttaatg aaatcaataa
     3901 tgatgataaa gtaactttag gtgatatcat taaagatcag ctagcttaat gaaaaaatac
     3961 attacaataa gcattttgag tattttatta ctcattttgc ttgctgttgt ttttacattg
     4021 ctttggcaat ttaaagctaa tgtaaatttc attccacaat ttgctaaaga tacaaatacg
     4081 cagccaagca ttcaaaccca aaatcaagat ctttcatggc aagaagaatt agcaaaatgg
     4141 cctacaagag attttacccc agcagcagaa aaatttacct tatattttga tgcggatact
     4201 agcgagctta aggagaaaaa taaatattat caacttatag ttggaaaata tgatatttat
     4261 tctatgtttt gcttaagaca gactttaaat tcttttaatg tgaagtattt tcttcttaaa
     4321 tctggccata gtccagaaat ctttttggat acaggcaatg aaaaacttat agatgatatt
     4381 atcaaagaat taaaaaaata taaaataaat acagaagtaa aggaaatttg gttatgaaaa
     4441 aaaagattat agtgtgtgat gctattttgg ataaaggtgt cgatattcta agaaaagctg
     4501 aagatattga gcttatagaa gctgcaaaat ttccaaaaga tgaacttatg caaatgctaa
     4561 gcgatattga agttgcaatt actagaagtt ctacggatgt agatgtaaat tttttaaatc
     4621 atgccaaaaa attaaaagcg cttgtgcgtg ccggggtggg cgtagataat gttgatattc
     4681 cagagtgttc taaacgagga gtgattgtga tgaatgtccc aactgcaaat actattgccg
     4741 cagttgaact aacaatggca catcttttaa catcagctag aagctttgtc aatgctcata
     4801 attttttaaa aattgaaaga aaatgggaaa gagaaaaatg gtatggcatt gaattgatga
     4861 ataaaacgct aggggttata ggttttggaa atataggttc aagagtagct atccgtgcta
     4921 aagcatttgg tatgaaaatt ttagcctatg atccgtatat ttctgcttct aagattacag
     4981 atttagatat ggaacaagca aaaaatttgg atgaaatttt agaaaaaagt gattttatta
     5041 ccattcacac accaaaaacc aaagaaacca atggtatgat aggaaagcaa gaaattgcaa
     5101 aaatgaaaga tggaataaga ttaataaatt gtgctcgtgg aggattgtac acagaagagg
     5161 ctttatatga aggtttaaaa agtggtaaaa tagcttggct tggtatagat gtgttcgata
     5221 aagaacccgc gactaatcat cctcttttag actttgaaaa tatttcagtt acttctcacc
     5281 taggagcaaa tactttagaa agtcaagaca atatcgcaag agaagcttgt gagcaagcat
     5341 taagcgcagc acgaggcgtg gcttatccta atgccttaaa tttaccaatt aaaactgaag
     5401 atttaccacc ttttgtagct ccttatatag aacttgtttc taaaatggct tttttagctg
     5461 ttcaaattga taaaaatcct ataaaaagta ttaaattaga ggctgaagga attattggtg
     5521 agtatgcaaa ttctatgcta acttttgcag ctgttggtgc tttgggtgga attttaggag
     5581 agaaaattaa ttatgttaat gcagaatttg ttgccaaaga aaaaggagtt gaattatctt
     5641 gcgaaactct tccaaatagt ggttataata ataaacttag cgttaaaatt atcaccgaaa
     5701 attcaaatat cagtgtttca ggaacagtgt ttaatgaaaa tgaacaacgc atagttggat
     5761 taaatggctt taaaactgat tttaagccaa agggaaaaat gattattttt aaaaacaaag
     5821 acataccagg agttatagct aaaatcagtt ccgttttggc agctaaaaat atcaatatag
     5881 ctgattttag gcttggtaga gatggttttg ggtatgcttt ggctgttgtt ttgattgatg
     5941 aaaaagttca aaaagaagta ttagatgaac taaaacaatt agaggcgtgt gtatttgtcc
     6001 aatatgttga aatttaaaat tttaattata gaagatgata tagatttaaa cgaactgctt
     6061 gttttaaagt taaaatctag tggttatgaa gttatatctt tagcggattt ttttggagtt
     6121 gaagatttgc tcgataatga gcaaattgat cttttaatag tcgatagaaa tttgcccagt
     6181 ggagattctt tagaaaaaat tcaagattta agagagcaag gatataaaga agcagttatt
     6241 tttcttacag ccaaggcttt acatcaagat ttactcgaag gctttgaaag tggttgtgat
     6301 gattatgttt gtaaaccttt tgatttcaat gagcttttgc ttcgcattaa agcaatttta
     6361 aaacgccata aaaaagaaga agaaaaacta tcttttggtg attttatttt agatttggtt
     6421 agttatgaat tcttttacaa aaatcaaaaa ttagaaatct caaatcttga ctatgagctt
     6481 ttaaaatgtt tttttgaaaa tccaaatacc ttgcttacta gacaattttt aagcgaaagt
     6541 gtttggaaag atgatactac aagtgataaa acaatcaata tagctctaac aagacttaga
     6601 aataaatttc caa
//
LOCUS       DAPOLW010000093         6606 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.093, whole genome shotgun sequence.
ACCESSION   DAPOLW010000093 DAPOLW010000000
VERSION     DAPOLW010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6606
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.093"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(54..236)
                     /locus_tag="ROE18_001304"
     CDS             complement(54..236)
                     /locus_tag="ROE18_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651477.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENCRRKNKM"
     gene            complement(233..913)
                     /locus_tag="ROE18_001305"
     CDS             complement(233..913)
                     /locus_tag="ROE18_001305"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HDX3651478.1"
                     /translation="MKDLFLFSSLLDASHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHAP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLMFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            complement(982..2322)
                     /gene="radA"
                     /locus_tag="ROE18_001306"
     CDS             complement(982..2322)
                     /gene="radA"
                     /locus_tag="ROE18_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HDX3651479.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVL
                     KELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIVDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            complement(2322..3188)
                     /gene="ftsY"
                     /locus_tag="ROE18_001307"
     CDS             complement(2322..3188)
                     /gene="ftsY"
                     /locus_tag="ROE18_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HDX3651480.1"
                     /translation="MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAS
                     AYLDTLLDPIFE"
     gene            complement(3188..3745)
                     /locus_tag="ROE18_001308"
     CDS             complement(3188..3745)
                     /locus_tag="ROE18_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HDX3651481.1"
                     /translation="MKIKKILLLVAISCLFVACSNDKEKQQNDVNLSTEASINQSDDM
                     NFKLNLIDGGSISVKKENAVLNFNDEDKVTLFVFFTTWCTPCIAEIPHLNKLQEKYNN
                     DFNIVGVLLEDKSNDEIQKFIEQHKISYKVANGENNYLLAKALGGVNGIPTMFLYNKH
                     SKLINQYLGLIPEEMLEIDIQKAIL"
     gene            3828..4454
                     /locus_tag="ROE18_001309"
     CDS             3828..4454
                     /locus_tag="ROE18_001309"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HDX3651482.1"
                     /translation="MEKTDFRALQKIRLFKHSKLNFKQDYKIFKECLKIIKLFKAKNI
                     LIFIPLHYEPNLIKFRHILNKNYKLFVPFMQDKSLKIVKLRLPFIKKRFGVLEPIDSF
                     FKAKIDLAIVPVIGVDKNLKRIGHGQGFYDRFFENLNYKPHIIFIQSIDALSQNNLTQ
                     KHDISGKLYINPYKKYYKKERKNDRITYRTYSRYSRTRYRIFSCKKNQ"
     gene            4375..5928
                     /gene="rny"
                     /locus_tag="ROE18_001310"
     CDS             4375..5928
                     /gene="rny"
                     /locus_tag="ROE18_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HDX3651483.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKFQKDFNQKFDDLSKKEQKLQQEEEKL
                     KEDKEYLCKSQKHIQNLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILKKV
                     EENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFAAERLINVINIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKRVSELEDIAK
                     SKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAVEYAK"
     gene            5937..6494
                     /locus_tag="ROE18_001311"
     CDS             5937..6494
                     /locus_tag="ROE18_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDX3651484.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKIALAMIKTKQHGIILLVTQKF
                     IYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFTAYTFGYVIEAIFDKLSLY
                     PYAAPLFLLFLAGIIWLYLSKFSKK"
BASE COUNT         2408 a         1140 c          926 g         2132 t
ORIGIN      
        1 gttttatgga aagataaaat gtaaccaaaa agtatcattt tatttttcta tggttacatt
       61 ttatttttcc gccgacagtt ttctataagt aaaacaaaaa ttaaagataa aagcaaacct
      121 ggtataatac ccaagcaaag atagaaaaaa gaattatatt taaaaaagaa gaaaagtgca
      181 ccaaaaagca ttaaagctaa agatgcacct ttgaaaaatt ctaaaatata gatcaatgac
      241 cttcctcaac aacagttgca cccgctaaat atacataagt taaaatcata aaaataaaag
      301 cttgtaaaaa tgccataaaa gttaaaagta cataagcagg aagtggagct atataaggaa
      361 ctaaagctaa aattaccatt aaaaataaat cgtcgccttt aatatttcca aacaaacgga
      421 aggacaaaga aaccacacga gaaagatgag agactatctc tataggaaac atcaaaggag
      481 ctaaaagttt aataggtccc atgaaatgag caaaatactt tacaaaacct tgtgccctaa
      541 taccctcaaa atgataatat acaaaaacta taatagccaa ggacaaagtc aaatttaaac
      601 ttgcagttgg agcgtgaaaa ccaggtatta tacctataat attactaaaa aacactataa
      661 ttcccaaagt tgcaaccaaa ggaagatatt ttcttgcacc tttttcactt cccatggtat
      721 ctctacccat agataaaact ccctctaaaa aagcctcacc taaattttgc ataccgcgtg
      781 gaacaagttg catagaacga gtagccatca tagccactat aacagcaatt aaagctacca
      841 aacctatgtg aaaaaaataa gaaaaagtat gacttgcatc aagcaaagag ctaaataaaa
      901 ataaatcttt catggtttcc tcaaaaattt tattctaaac tcgaaatttt agcaaaatct
      961 tacttatatt ttaatgaaaa tttacatcca ttctaaaact tgcgaaagtt ctttagcaac
     1021 aaaacactta agccctatat cttccaaagg cttagaagga acaatggcat ttttaaattt
     1081 ttgcatttta gcttctttta aacgcgtatc aaggctaaaa acctctctaa tttctccatt
     1141 taaactaagc tcccctataa aaatactatc tttgctcaaa gggcgatttt taaaacttga
     1201 aataatagct gcaaccacag ccaaatccgc cgcagtttcg cttactttta ctccgccact
     1261 aatatttaca aatacatcat aatgccccaa aggaatttca agctttcttt caagcaaagc
     1321 caaaagcata tctaagcgat ttttttcata gcccgtagcg ctgcgttttg gataagaact
     1381 ttcacacacc aaagcttgaa cttctaaaac caaagcacga gatccctcca ttacaacacc
     1441 taaagcactt cctgaaatag cctttccacg agtaaaaaaa cgatttgcca aatcttttgc
     1501 actgatcaaa cccttagcag tcatctcaaa aatacctact tcattcgttc caccaaaacg
     1561 atttttaaag cctcttaaaa gtctgatttc tttagtggca tctccctcaa aataaagcac
     1621 cacatctacc atatgctcaa gaactctagg tcctgctata gcaccttctt tagtaatgtg
     1681 ccctatgata aaagtactga tattataagc cttactcaca cgcataagct caaaagtaat
     1741 ctcacgcacc tgagtgatgc ttcctgctgc tgaagtgatt ttatttgaat atagagtttg
     1801 tatagaatca acgataagaa tgctataatc ttttttgtgc aattcttcta aaatattttc
     1861 aaggcaaagt tcagtaagta aaaataaatt cggagtatta gcctcaagac gatcagctct
     1921 taatttaatc tgggctttac tttcttcgcc actgacataa agcacttttt taccctgttt
     1981 agctaaattt gaagcaattt ttaacaaaag cgtagatttt cccacacctg gacttccgcc
     2041 tataagcact aaagaacctt caacaagccc tccgcctaaa accaaatcaa gctcattatc
     2101 atctgtgctg tatcttgtaa aatgctctaa ctccacatct tcaatacaaa cagcctcact
     2161 tgttttcatg ctaacttgcg caagctcttt taaaacttta atttgctcag cttttaattc
     2221 tacaaaacta tcccaagctc cacaatcagg acattttcca agccatttgc tttgttgatt
     2281 tccacaagct tgacattcaa aaagtgcttt attttttgcc attattcaaa aataggatct
     2341 aataaagtat ctaaataagc acttgcatta aattcttgta aatccgtcat ttgctcaccc
     2401 acgcctacat aaaaaatagg aagctcaagc tctcttgcta tactaaaaag tgcaccccct
     2461 ttagctgtcc catcaagctt tgtgataatc acaccatcaa gttttacaag ctcattaaaa
     2521 gctttagctt gtaaaattcc agcatttccc tgtgttccat ctaaaactaa aatttttcta
     2581 tggggtgcgc cttctaaagc tttgtttgaa attcttacaa ttttttcaag ctcatgagct
     2641 aaattttttt gattttgcaa acgccctgct gtatcgataa taactctatc aaaatccttt
     2701 gcttttgctt tagaaatggt atcaaaagca accgctgaag gatcatgccc ttgtgcagtt
     2761 aaaactatat ctacatccac tttttgcgcc caaagtttta attgctcaat cgcacctgct
     2821 ctaaaagtat cacacgctcc taaaatcact ttttgatttt ggtttttgta taaataagca
     2881 agcttggcaa tacttgttgt ttttcctgct ccatttactc ctaaaataag ctctacaaaa
     2941 ggtttttctt gattggtttc ttttttttca taaagaaaat aagaacccat aacacgcttt
     3001 aaatcttctt tttttacttc attttgaggt ggtaaataat aaattatctc ttcaactatt
     3061 tcataactta catctgcttc aagcaaaatt tcttcaagca aatctttggt tatcttttta
     3121 ttctctcctt taactccaac aatattttca agagtttttg caagtccttt tttaaaaaaa
     3181 ttaaacatta aagtatagcc ttttgtatat caatttctag catttcttca ggaataagcc
     3241 ctaaatactg attaatcaat ttagaatgct tgttgtaaag aaacatggta ggaattccat
     3301 ttaccccacc taaagcttta gctaaaagat agttattttc accattagcg actttataag
     3361 atattttatg ctgttctata aatttttgaa tctcatcgtt agatttatct tctaataaaa
     3421 ccccaactat attaaaatca ttattatact tttcttgtaa tttattaaga tgagggattt
     3481 cagcaatgca aggggtacac caagtggtaa aaaatacaaa caaagttacc ttatcttcat
     3541 cgttgaaatt taaaacggca ttttcttttt taactgaaat tgatcctcca tcaatcaaat
     3601 taagtttaaa attcatatca tcactttgat ttatacttgc ctcggtgctt aaatttacat
     3661 cattttgctg cttttcttta tcattgctac aagcaacaaa caaacaagat attgccacta
     3721 gtaaaagtat ttttttaatc ttcattattt atcaatcctt tattattctt tataaaaatg
     3781 ctaaaattat aacatacata agataatatt tttttaaagg catattaatg gaaaaaacag
     3841 attttagggc attgcaaaaa atacgccttt tcaaacattc aaaactaaat ttcaaacaag
     3901 attataaaat atttaaagaa tgtcttaaaa taataaagct atttaaagct aaaaatattt
     3961 taatttttat tcctttgcat tatgaaccaa acttaataaa atttcgccat attcttaata
     4021 aaaattacaa actttttgtt ccatttatgc aagataaaag tttaaaaatt gtaaaattaa
     4081 gattgccttt tattaaaaaa aggtttgggg ttttagagcc tatagattct ttttttaaag
     4141 caaaaattga tttagctatt gtgcctgtaa ttggcgtcga taaaaattta aaaagaatag
     4201 gacatgggca aggtttttat gatagatttt ttgaaaattt aaattacaaa cctcatataa
     4261 tatttatcca aagtatagat gctttaagtc aaaataatct aacacaaaag catgatattt
     4321 caggaaaatt atacataaac ccttataaaa aatattacaa gaaagaaaga aaaaatgata
     4381 gaatcactta tcgcacttat agccgctata gtcggactcg gtataggata tttagttgca
     4441 aaaaaaatca atgatgccaa atatgaaatt ttcgtagaac aagccaaagc taaagccaaa
     4501 gctatagaat acgaagcgga gcttatttta aaagatgcaa aaaattcaat tcttaatgca
     4561 gaattagaag ttaaaaaaaa atacgaagaa aaaactcaca aatttcaaaa agattttaat
     4621 caaaaatttg atgatctttc taaaaaagaa caaaaacttc agcaagaaga agaaaaacta
     4681 aaagaagata aagaatacct ttgcaagtca caaaaacaca ttcaaaactt acaatctgat
     4741 gttgataaat taaaaaataa atatcaagaa aaacttgacg atgttttaaa aattttagaa
     4801 cattcgacag gacttacaca aaatgaagcc aaagaaatca ttcttaaaaa agtagaagaa
     4861 aattctcgcg agcaaattgc acatatagta agaaaatatg aagaagaagc aaaaaatgaa
     4921 gctaaaagaa aagctaattt catcattgct caagctactt ctcgttttgc aggtgaattt
     4981 gcagctgaaa gacttatcaa tgttattaac attaaaaacg atgaacttaa aggacgtatc
     5041 attggtaaag aagggcgcaa tgttaaaacc ttggaaatgg ttttaggtgt tgatattatc
     5101 atcgatgata caccaggtgc tattatagta agttgtttta atctttatcg ccgtgctatt
     5161 gctacaaaag ttatagaact tttagttgaa gatggcagaa ttcaacccgc gcgcatagaa
     5221 gaaattcacg aaaaagtgtg taaagaattt gatagtgcca ttctagaaga aggcgaaacc
     5281 atagttatgg atctaggttt aaataaaata caccctgaaa ttgtaaaact cataggaaaa
     5341 ctcaaatacc gagcaagcta tggacaaaac gctttagcac attctttgga agtggctcac
     5401 cttgcaggaa tcattgctgc tgagtgtggt ggagatgaga atttagcacg tcgtgcggga
     5461 attttacatg atataggaaa agcattaacc catgattttg aaggatctca tgtggattta
     5521 ggtgcagaac tttgcaaacg ctacaaagag catcctgtag taatcaatgc tatttacgca
     5581 catcatggac acgaagaagc tacaagcata gaatcagcag ctgtttgtgc agcagatact
     5641 ttaagtgctg cacgacctgg agctagaaga gaagtgttag aagctttctt aaaaagagtc
     5701 agtgagctag aagatatcgc taaaagtaaa gaaggaatta aaaatgccta tgcaatcaat
     5761 gccggaagag aaattcgcgt catagccaat gctcagcttg ttaatgatga tgaaagtgta
     5821 cttttagcta aggaaatagc agctgaaatt caagaaaaaa tgcaatatcc tggtgaaatt
     5881 aaagtcaatg ttatacgtga acttagagct gtagaatacg ctaaataagg tttattatgc
     5941 aagatatgat tgatacttta ataaaatatg gttatattgt tttattcttt tactctttag
     6001 ggggcgggat ggttggaatt ttagctgcag gagttttaag ttctcaagga aaaatggatc
     6061 ttagtttttg cattgctctt gcttttattg ctaataccat aggttcaact ttgcttttta
     6121 tacttggaaa atattataaa aaagacatta tgccttattt taaaaaacac cgacgcaaga
     6181 tagcccttgc tatgataaaa acaaaacaac atggaattat tttacttgta actcaaaaat
     6241 ttatttatgg tttaaaaact ttcattccca tagctgcagg tatggcaaaa tataatttta
     6301 ttaaattttt tattatcaat actctagcta gtttggcatg ggctattgtt ctaggtttta
     6361 ctgcttatac ttttgggtat gttattgaag caatttttga taaactgagt ttatatcctt
     6421 atgctgctcc tttattttta ttatttttag ccggaataat ttggctttat ttaagtaaat
     6481 tttctaaaaa ataatgtctc tatggaattc tttttcttac tcttttaaag aatttcatta
     6541 tttatttttc tctgttgttg ttatttttat ttttaatatc cttttagaat ataataattt
     6601 tttaaa
//
LOCUS       DAPOLW010000094         6594 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.094, whole genome shotgun sequence.
ACCESSION   DAPOLW010000094 DAPOLW010000000
VERSION     DAPOLW010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6594)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6594)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6594
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.094"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..460)
                     /locus_tag="ROE18_001312"
     CDS             complement(<1..460)
                     /locus_tag="ROE18_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651485.1"
                     /translation="MRLLVLFFLILPLYSVELISFNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYIMLQNKQNINLELS
                     SINDKFGVRIRAIEQGKANIKSVPTTTVNNSQELMPKPKSTSLEGYDYTNY"
     gene            complement(461..769)
                     /gene="fliN"
                     /locus_tag="ROE18_001313"
     CDS             complement(461..769)
                     /gene="fliN"
                     /locus_tag="ROE18_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HDX3651486.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(769..1191)
                     /locus_tag="ROE18_001314"
     CDS             complement(769..1191)
                     /locus_tag="ROE18_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HDX3651487.1"
                     /translation="MLKILEYSITHFCEHILRLRIEAAQDISGELYGASIPIMGKSEG
                     ECNFYLFFPKEFLKKIAEILINDEKFKEDDWCDLTKECANQIIGYAKNLLNDAKGDDE
                     YKLGIPEYLGKVDFSEIVLDEALTYKFENCYFRIGYCK"
     gene            complement(1262..2011)
                     /locus_tag="ROE18_001315"
     CDS             complement(1262..2011)
                     /locus_tag="ROE18_001315"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HDX3651488.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCFKQGNLDIIMKDIEEIFKK"
     gene            complement(2004..3182)
                     /gene="trpB"
                     /locus_tag="ROE18_001316"
     CDS             complement(2004..3182)
                     /gene="trpB"
                     /locus_tag="ROE18_001316"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HDX3651489.1"
                     /translation="MKKAYYGDFGGQFLPESAMFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYVGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKL
                     LCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            complement(3179..3778)
                     /locus_tag="ROE18_001317"
     CDS             complement(3179..3778)
                     /locus_tag="ROE18_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HDX3651490.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGLIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTKDFILAGGIGLDN
                     VHKAVKTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            complement(3765..5366)
                     /gene="trpD"
                     /locus_tag="ROE18_001318"
     CDS             complement(3765..5366)
                     /gene="trpD"
                     /locus_tag="ROE18_001318"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HDX3651491.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDAISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPSNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKPQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQVVALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSAFILAALGVKVAKHGNRAISSSSGSTDVLEALNITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEIRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            complement(5363..>6594)
                     /locus_tag="ROE18_001319"
     CDS             complement(5363..>6594)
                     /locus_tag="ROE18_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HDX3651492.1"
                     /translation="FYYRQILEKFENSYFAEDLTKVIIGIDCDYLDANELSFSEFKAK
                     YYEALSKNKICDFAGFFGVFSANFVSLFEKIPLSSKKNYDFPLFLFANAKAYLIYEKN
                     SKMFFKFGASKYFEYLKDDIEPMKKKQKNDFEILNSLEDEKNDFLKMCEKAKEYLLSG
                     DIFQVVLSKQLCIKHQVNAFDYYESLSALNPSAYMFYFPSKYGVVLGSSPEFLLKIKK
                     REIYLAPIAGTRNLENNCDLLALEKDLLSDEKELSEHKMLVDLARNDASKFGTQTRVE
                     NLFSIIKNKFVMHIVSEVYANMKEDASIFDVIEAVFPAGTLSGAPKIRALEITSELED
                     CDRGIYGGAVGFLNFNEDITLAILIRCAFFTQDKAYLASGAGIVLQSESQKEYAEICA
                     KRKALLVAFENLKKENQ"
BASE COUNT         2247 a         1260 c          730 g         2357 t
ORIGIN      
        1 tataatttgt ataatcatac ccttctaaac ttgtactttt tggtttaggc attaattctt
       61 gagaattatt cacagtagtt gtaggtacag atttgatatt tgcttttcct tgctctatag
      121 ctcgtatcct tactccaaat ttatcattga tagagctaag ttctaaatta atattttgtt
      181 tgttttgtag cataatatag gtattattat ttttagaact aatactaatt ttatctacaa
      241 gttgagagtt aagttctttt aattcatctt tagaatacgt taaatcacta aaagttaaaa
      301 gagttaaatt tttttctttt ttttgagaaa tcttgccatt ataggcatta tcaaaagaaa
      361 gcattaaatc tactcgatca tttctatcgt agatattaaa actaatcagc tcaacactat
      421 ataaaggtaa aattaaaaaa aataatacta gcaatctcat ttaaatttct tttttaaagt
      481 attgaagcac agtcttagaa tccaaaattt cattaattct tatagcgaga tttttttcat
      541 aaaccataac ctcgcctttg ccaaaaattc ttttattgat ataaagctca acgctttctc
      601 cagcaggctt ttcaagatca ataaccgaac ctacttcaag ttttaaaagc tccgctacac
      661 tcatatttgt agttccaagc tcgcttacaa aatctactgt aatatctaag atatcttcat
      721 aagattgtaa aagcccatga tgaatgttaa actctatatc atcgctcatt atttgcaata
      781 tcctattcta aaataacaat tttcaaattt ataagttaaa gcttcatcta gaactatttc
      841 agaaaaatca acttttccta aatattccgg aattccgagt ttatactcgt catcaccctt
      901 ggcatcattt aacaaatttt tagcataacc tataatctga ttggcacatt ctttagttaa
      961 atcgcaccag tcatcttctt taaatttttc atcattaatt aaaatttctg caattttttt
     1021 taaaaattct tttggaaaaa ataaataaaa attacattct ccttcgcttt tgcccatgat
     1081 aggaatactc gctccataaa gttcaccgct tatatcttga gctgcttcaa tgcgaagtct
     1141 taagatatgc tcgcaaaaat gagtgatgga atactcaaga atctttaaca taactaccgc
     1201 ctttataaaa aacttaattt aaaattatag taaatataaa ataaaaatat gttttaaaat
     1261 tttatttttt gaaaatttct tcaatatctt tcattattat atccaaattt ccttgtttaa
     1321 aacactttac tatgctagtt cccacaatca ctccgtcagc aacttttctc attcttttta
     1381 catcttgatt attttgaatg ccaaagccta caaaaatagg caaatttgta aaagatctga
     1441 tttcttttac tttatcttgt aagattgctt cttcgacact tttcgtacct gtaataccta
     1501 tgcttgctaa taaataaata aaacctttag catgttttac taacttttta accctttctt
     1561 taggggttgt aacacttaca agtgtaatta aagctatatt atatctttca cactctttaa
     1621 tcaaatcatc actttcttca aaactcaatt caggcacaat caaagcacaa atccctaaag
     1681 attttgcttt tttcacaaat ttttccaagc cataagaaaa aattaaatta taataaacca
     1741 taaaaaccaa agctttttta gtttttatcc tagctaaaag ctcaaaaaca ctatgaatat
     1801 ccacgccttg atcaagagct atttttgccg catctgcaat aatctcacca tcggcaatag
     1861 gatcactata agcaacacca agttctaaaa tatcaatagg actttgatcc aatctttgca
     1921 aaaaagcttc acttgtttga agatttggat aacctaaaac cgtataagcc acatttgcat
     1981 tttctttata aaattttcta aaatcaacca taaatcaccc cttttttata atctctaatc
     2041 atttgcatat ctttatctcc cctgcctgaa agatttacta ctatcacgct tttctttttt
     2101 aaagttggac aaagtttttc taaaaatgcc aaagcatgcg aactttcaat cgctgcaata
     2161 ataccttctt ctttacaaag taattttaaa gcctgcatac attcttcatc acttatagca
     2221 tgatattgcg ctcttttgct ttcaaataaa aaagcatgca aaggaccaat tcctggataa
     2281 tcaagccctg cagaaacact atgtacaggc aagatattgc ctaaatcatc ttgtaaaacc
     2341 ttggttttca taccgtgaat aatgcctgtt tttcccttat ttaaagtcgc tgcatgataa
     2401 ggcgtatcaa tgccaagccc ccctgcttca atacctataa gtttaacatt ttcatctttg
     2461 ataaaatcat aaaaaatccc agctgcattg cttccacccc caacagctgc gataatataa
     2521 tctacttttt tattgagttt ttgaagttgc attttgcatt cttttcctat aatactttga
     2581 aaatgcatta ccattttagg ataaggataa ggacctaccg cacttccaac cacataaaaa
     2641 atatttttaa tatctccaac ccaagcttga atagccgcag tagtagcttc ttttagagtt
     2701 ttaagcccac tttgtactgc atgaatttta gcacccaaaa gctccatttt ataaacattt
     2761 aaagcctgtc tttgcacatc ggttgccccc atataaattt cacattcaag tcctaaaagt
     2821 gctgctgcag tggctgttgc aagcccgtgt tgacctgctc ctgtttctgc tatgattttt
     2881 ttctttccca ttttttttgc taaaagggct tgagcgatgg cattattgat tttatgtgct
     2941 ccggtatgat ttaaatcctc gcgttttaaa taaatttcat gctgatattt tttgcttaaa
     3001 tttctagcaa aataaagtgg agtaggacgc cctacataag tttttaaaag ctcgtttaat
     3061 tcttttttaa agagtttatc tttagaaaat ttcaaaaaag caccttctag ctcatttaaa
     3121 gcaaacattg cactttcagg caaaaactgc ccaccaaaat ccccataata cgcttttttc
     3181 attttttcaa ctcctttaaa atttgtttta ttttgttgat atcttttaag cctttttcat
     3241 cttcaagttt tgaattaaga tctaaaattt tagctcccgt ttttacagcc ttatgaacat
     3301 tatccaaacc tatgcctccg gctaatataa aatctttagt ataagaacct aataaagtcc
     3361 aatcaaaact tattccatta ccgcccttta aaattccctt agcatcaaaa agtactaaat
     3421 tagcaaaaat ttcacttttt aaatctaaac tattttccac actaatcacc tgccaaacaa
     3481 aaacattttg cacctttaaa atttcaaatt cttctttggt aatagtgcga taaatttgta
     3541 tcccatcaag cttagcttct ttaatacatc ttaaaatttg ttccaaattt tcatctacaa
     3601 aaacaccgac aactttttta tctttttcat gaaaaattgc acttaaattt cttgcttgtt
     3661 ctaaactcac tcttcttgga cttttagcaa aaataagtcc aaaaaaatca atatttaaaa
     3721 aagctaaatc tttggcattt ttttcatctt taataccaca aattttaagc tttagcataa
     3781 gcttgatact ccttaaaata ttctataacc ttacctgaat aaatggcttc taaaatcata
     3841 tctttagcca ctaaaggcga acttgcttta ttggctgtat aaagtgcaaa catagcattt
     3901 aaaactacca aatcaaattt tgccccttgc attctaccgc ttaaaatatc ttttaaatct
     3961 ttagcgttgt catatgcact agatcctatg atttcactat gaaaagctct tttaaaacca
     4021 aattgttcag gacagataga atactctaaa atttctcctt cacaaagctc ataaatttta
     4081 ctttcatcgc aaatactaag ctcatccata ccatcatttc ctcttaccac taaagctttt
     4141 ttgcgtccta aattttttaa aacctctatc aaaagcctat gcacaggtgc gtgataattt
     4201 cccataagtt gatattttaa ctttaaatta gggtgcaata aaggacctaa aacattaaaa
     4261 accgttctta ctccaagtct tgatctgatc tctttaagtt ctcctactaa aggatgaaaa
     4321 aatggagcat gtaaaaaact aagcccttga ttatttagtt gttttaaaac tgattctaaa
     4381 gtgtttggag tagttatatt taaagcttct aacacatctg tacttccgct agaacttgaa
     4441 atggcacgat ttccgtgttt ggctactttt actcctaaag ctgctaaaat aaaagcacta
     4501 gtcgtagaaa cattgatact tttaaaacca tctccacctg ttccacaaat atcaatcatc
     4561 tcactctcat cactaaaagt ttgagaatat cttaaaattt gtcttacaaa agcacttaaa
     4621 gatttttcat ttaaggactt ttcagtgatt aaaatcaaca aagccactac ttgtaaaatt
     4681 tcataatctt tagacataat aatcttacaa atttgctcaa aatcatcgct ttgtaaaaaa
     4741 tgattttcac tcattttttg caaataaaaa cttaaaggat tttcttgttt ttgtggtttt
     4801 tttatatctt gttttaaaaa attagaaaaa agttgcaagc catattcact aaaatagctt
     4861 tcaggatgaa attgcacacc ataataaggt aaatttttat gtcccaaagc cataatcaca
     4921 cccttttcat caagggctaa aatttcaagc tcatcactaa gctgtttaac ctctaaagaa
     4981 tgataacgca ttacactaaa atttgaaggc aaattagaaa ataattcatt ttccctgcac
     5041 tgttttatca aagaattttt tgcatgcata ggctcttgca tcttaaccac taaagaatca
     5101 aaagctaaag ctaaagcttg atgtcctaag caaatgccca aaacagggat attaagcctt
     5161 gctttaaaaa tttcaagaca aatcccactt tgacttggat gctttggacc aggacttaaa
     5221 ataatatgag taggatttaa atttttaatt tcactcagag aaattgcatc atttcttctt
     5281 actaaaattt catcattgct gagttgctct aacatgcttt taacattaaa aacaaaagaa
     5341 tcataattat caattaaaag tatcattgat tttccttttt taaattttca aaagctacca
     5401 aaagcgcctt gcgtttagca caaatttctg catattcttt ttgactctca ctttgcaaaa
     5461 caatacccgc cccacttgcc aaataagcct tatcttgagt aaaaaaagcg caacggatta
     5521 aaatcgctaa agttatgtct tcgttaaaat ttaaaaatcc taccgcacca ccataaattc
     5581 cacgatcgca atcttcaagc tcgctagtga tctctaaagc tcttatttta ggagctccgc
     5641 ttaaagttcc cgctggaaaa actgcttcaa tcacatcaaa aatactcgca tcttctttca
     5701 tattggcata cacttcactc actatgtgca ttacaaattt atttttaata atagaaaaaa
     5761 gattttccac tcttgtttga gtgccaaatt tagaagcatc atttcttgct aaatctacaa
     5821 gcatcttatg ttcactaagt tctttttcat cgcttaaaag atctttttct aaagctaaaa
     5881 gatcacagtt attttccaaa tttctagttc cagcaatagg ggctaaataa atctctcttt
     5941 ttttaatttt caataaaaac tctggagaag aacccaaaac aacaccatat ttacttggaa
     6001 aataaaacat ataagcgctt ggatttaaag cacttaaact ctcataataa tcaaaagcat
     6061 ttacttgatg tttgatacaa agttgcttac ttaagaccac ttgaaaaata tctccactta
     6121 aaagatattc tttggctttt tcgcacattt ttaaaaaatc atttttttca tcttctaaag
     6181 aatttaaaat ttcaaaatca tttttttgtt tctttttcat tggttcaata tcatctttta
     6241 aatattcaaa atattttgaa gcaccaaatt taaaaaacat cttgctattt ttctcataaa
     6301 tcaaataagc cttagcattg gcaaataaaa ataaaggaaa atcataattt ttcttagaag
     6361 aaagtggaat tttttcaaac aaagatacaa aatttgcact aaaaactcca aaaaatccag
     6421 caaagtcgca aattttattc ttgcttaaag cttcataata ttttgcctta aactcgctaa
     6481 aggataattc attagcatct aaataatcac aatcaatccc tataattacc ttagtcaaat
     6541 cctctgcaaa ataagaattt tcaaattttt caaggatttg tctgtaataa aaat
//
LOCUS       DAPOLW010000095         6594 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.095, whole genome shotgun sequence.
ACCESSION   DAPOLW010000095 DAPOLW010000000
VERSION     DAPOLW010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6594)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6594)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6594
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.095"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..894
                     /locus_tag="ROE18_001320"
     CDS             <1..894
                     /locus_tag="ROE18_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDX3651493.1"
                     /translation="LIEIVAFSHDVSNSFKLNEELALNHAKLRELSINLENTVKNHQQ
                     EFIQLGKKFEKKMQIALEKNEKDIKIAYEEILKSSLEQMISDIAHQWRQPLNELGIAM
                     FQMKQNLKDEKGFAEIYSQSKDMIKNMSETIDVFRTLFNKGVEQCVFIKETLNKALEI
                     AFETIEKNHVNINIVSKSDYEVLAYENGLIRVFLNLILNSIEAFKNKKRKIITINFSK
                     FGKNYLKITIKDNAGGIDKENLDKIFQPYFTTKHPSQGIGVGLYISRQIIESFQGKIK
                     VKNGKDGACFEIFLKLKERVE"
     gene            897..1577
                     /locus_tag="ROE18_001321"
     CDS             897..1577
                     /locus_tag="ROE18_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDX3651494.1"
                     /translation="MSQECKELIILVVEDEVKARESMINILSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDYLIGEKIEANMLVKISEEYQFNKTKRTLIYSGGEIVLTKK
                     ELAFISLLLKQPGALVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            1703..3169
                     /gene="ccoN"
                     /locus_tag="ROE18_001322"
     CDS             1703..3169
                     /gene="ccoN"
                     /locus_tag="ROE18_001322"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HDX3651495.1"
                     /translation="MHPGNVLNYDYTVARYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKL
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            3182..3847
                     /gene="ccoO"
                     /locus_tag="ROE18_001323"
     CDS             3182..3847
                     /gene="ccoO"
                     /locus_tag="ROE18_001323"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HDX3651496.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDAENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            3852..4115
                     /locus_tag="ROE18_001324"
     CDS             3852..4115
                     /locus_tag="ROE18_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HDX3651497.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYWYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            4115..4978
                     /locus_tag="ROE18_001325"
     CDS             4115..4978
                     /locus_tag="ROE18_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDX3651498.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGESE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSAAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            4975..5196
                     /locus_tag="ROE18_001326"
     CDS             4975..5196
                     /locus_tag="ROE18_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HDX3651499.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLVILAVLTIWGLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            5193..5294
                     /locus_tag="ROE18_001327"
     CDS             5193..5294
                     /locus_tag="ROE18_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651500.1"
                     /translation="MSKALEYLIVIGLVVAAAITAWSVLTVNHLHIG"
     gene            5291..5893
                     /locus_tag="ROE18_001328"
     CDS             5291..5893
                     /locus_tag="ROE18_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651501.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     ALALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            5880..6401
                     /locus_tag="ROE18_001329"
     CDS             5880..6401
                     /locus_tag="ROE18_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HDX3651502.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQNVENNYNQIQKQQVNFDKFFKVNFQNDKITFIGKRKIPSYEVDQNSYVANFKISA
                     LQNINSDDLKVQVLLTRPFTKNFDQKLEGQVKNGILSIALPKLDKGRWELKLKFYANQ
                     ETVGFFSYELNAQ"
     gene            6398..>6594
                     /locus_tag="ROE18_001330"
     CDS             6398..>6594
                     /locus_tag="ROE18_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651503.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKD"
BASE COUNT         2271 a          768 c         1272 g         2283 t
ORIGIN      
        1 ttaatagaaa tagtagcatt ctctcatgat gttagtaatt cttttaagct taatgaagag
       61 cttgctctaa atcacgctaa attaagagaa ttaagtatta atcttgaaaa tacagttaaa
      121 aatcaccaac aagaatttat acagttaggt aaaaaatttg agaaaaaaat gcaaattgcc
      181 ttggaaaaaa atgaaaaaga tattaaaata gcatatgaag agattttgaa atcttcatta
      241 gaacaaatga ttagcgatat agcacatcaa tggagacaac cgttaaatga gctcggtatt
      301 gccatgtttc aaatgaagca aaatcttaaa gatgaaaaag gatttgctga aatttactca
      361 caatcaaaag atatgattaa aaatatgtca gaaacaattg atgtgtttag aactttgttt
      421 aacaaaggag tagagcagtg tgtatttata aaagagactt taaataaagc cttggaaatt
      481 gcttttgaaa ctatagaaaa aaatcatgta aatattaata ttgtttcgaa aagtgattat
      541 gaagttttgg catatgagaa tggtttaata agagtttttc ttaatttgat tttaaattca
      601 atagaagcat ttaaaaacaa aaaaaggaaa atcataacaa taaatttttc aaaatttgga
      661 aaaaattatc tgaaaattac aataaaagat aatgctggtg ggattgataa agaaaattta
      721 gataaaattt ttcaacctta ttttacaaca aaacatccta gtcaaggtat aggagtagga
      781 ctttatataa gtagacaaat tatcgaaagt ttccaaggaa aaataaaagt taaaaatgga
      841 aaagacgggg cttgttttga gatattttta aaactaaaag agagggtaga gtagaaatgt
      901 cacaagaatg taaagaattg ataatattag tagttgaaga tgaggttaag gctagagaat
      961 caatgattaa tatattaagc gaacgcttta gtaaagtaat cggagctcaa aatggagatg
     1021 aggggcttaa aaaatttaaa aaatttaagc cagatttagt tatcacagat attgctatgc
     1081 ctattatgga tggactggat atggcaagag agattaaaga aatttcagat gatgtcccaa
     1141 ttgttgttct tagtgcgtat tcagagaaag agagactttt gcgttctatt gatattggta
     1201 tagataaata tttgattaaa cctgttgata tagaagagtt gtttaaagtt ttagattatc
     1261 tgataggtga aaaaattgaa gcaaatatgc ttgtaaaaat ttctgaagaa tatcaattta
     1321 acaaaactaa acgaacttta atttacagtg gtggagaaat tgttttaact aaaaaagaat
     1381 tggcttttat ttctttgctt ttaaagcaac ctggagcttt ggttttgcat gaagatatta
     1441 agaaaaatgt ttggataggt gaacatgtga gcgatactgc tgttagaact tttataaaaa
     1501 gagtaagaga taaagtgggt gaagatttta taaaaaatgt gccaagttta ggttataaga
     1561 taaatatcaa taaataagac tgatttagcc ttaaaatata aaacataaca aatgattaac
     1621 aaaattatca tttttaagaa aaaatgtata attaatattc tataatattc tcttgttatc
     1681 aaaaatttta aggagaaagt cgatgcatcc aggtaatgta ttaaattacg actatacggt
     1741 tgcaagatat tttatgtttg cgaccatatt gtttggcatt gttggtatgg ctataggaac
     1801 tcttatagct tttcaaatgg catatcctaa tttaaattat ttagcaggag aatatgccac
     1861 tttttcaaga cttagaccac ttcatacttc aggtgtgatt tttggtttta tgctttcagg
     1921 gatttgggca acttggtatt atataggtca gcgtgttctt aaagtgagta tggctgagtc
     1981 aagattttta atggctgttg gtaagcttca tttttggctt tatatgctta ctatggtttt
     2041 agctgttata tctttgttta tgggtgtgac tacatctaaa gaatatgcag agcttgagtg
     2101 gcctttagat attcttgttg ttcttgtttg ggttttatgg ggtgtaagta tttttggact
     2161 tattggaatt cgccgtgaaa aaacccttta tatttctcta tggtattata tagctacatt
     2221 tttaggtata gctatgcttt atctttttaa caacatggaa gtaccaactt attttgttac
     2281 tggaatgggt aaatggtggc atagtgtatc aatgtatgca ggaacaaatg atgctttagt
     2341 acaatggtgg tatggacata atgctgtggc atttgtattt actgtgggta ttattgctca
     2401 aatttattac ttcttgccaa aagaaagtgg tcagccgatt ttctcttata aactctcttt
     2461 atttgcattt tggggcttaa tgtttgttta tctttgggca ggtggtcacc atttgattta
     2521 ttcaactgta cctgattgga tgcaaactat gggttcggtt ttctctgtag tattgatttt
     2581 accttcttgg ggttcagcga ttaatatctt gcttactatg aaaggtgagt ggagtcagct
     2641 tcgcgagagt ccgttgatta aatttatgat tttggcatca actttctata tgttctcaac
     2701 acttgaaggg ccaattcttt caattaaatc tgttaatgct ttagcacact ttacagattg
     2761 gattccagga catgttcatg atggaacatt aggttgggta ggatttatga ctatggctgc
     2821 gctttatcat atgactccta gagttttcaa aagagagctt tatagcaaat ctttaatgga
     2881 agctcaattt tggatccaaa ccacaggtat agttctttat tttgcttcaa tgtggattgc
     2941 gggtattact caaggtatga tgtggagagc gacagatgag tatggtaact tgctttatag
     3001 ctttattgat actgttgtgg ctattgttcc ttattattgg attagagcga ttggtggatt
     3061 gttgtatctt atcggtttct ttatgtttac ttataatatt tacaaaacaa ttgcttgtgg
     3121 aagagtgctt gataaagaac caaaaagcgc ttcgcctatg gcagcataaa aaggagaaaa
     3181 tatgtttagt tggttagaaa aaaatccatt cttttttgct gtagctgttt ttgtagtgat
     3241 tgcttatgca ggcatagttg aagttttacc aaattttgca gaaaatgcaa gaccaattga
     3301 aggtaaaaaa ccttatacgg ttttacaact tgcagggcgt gcagtatata ttaaagatag
     3361 ttgtaatgct tgtcattcac agcttattcg tccatttaaa tcagaaacag atcgttatgg
     3421 tatgtattct gtaagtggtg aatttgctta tgatagacct tttctttggg gctcaaaaag
     3481 aacaggacct gatcttgctc gtgtaggaaa ttatagaacg gctgattggc atgaaaatca
     3541 tatgtgggat cctacttctg ttgttccaga ttctattatg ccttcatata agcatatgtt
     3601 taaaaataat gcagatattg aaactgctta tgctgaggct ttaactgtga aaaaagtttt
     3661 caatgttcct tatgatgcag aaaatggaac aaaacttggt tcttgggagg atgcacaagc
     3721 tgaagtaaaa gctgaagctc aggctatagt tgatcaaatg aaaaatcaag aagtaaaaga
     3781 tgcttttgct aaaggtgaaa tcaaagaaat agttgctttg atcgcttatt taaatagctt
     3841 aaagtaagat gatggaacat ttatcaatag tttttgatgt gattaaaaat ttaatcacat
     3901 ttgatttagc aacagttcaa aaacatgagt gggagatttt ccaaggttat ggtttttttg
     3961 cactcgtgat gtttttgtca atagtattat atgcgtattg gtatcattta tatagaacag
     4021 aaaaaaaagg cgagagaaat tatgaaaatt atgcaaacct tgccttaaaa gatgatattg
     4081 atgatagtgt attagaaagt aaaaggagtg cttaatgcaa tggttaaatt tagaagataa
     4141 tgttaatctc ttatctttaa ttggagctat tcttatcatt ttaatcacac tagttattgt
     4201 gggtagaatg tttaagcaaa tgaaagaaaa aaaaggcgag tcagagctta gtgaacatag
     4261 ttgggatgga ataggagagt ataaaaatgc tgttcctact ggttgggctg tggtattttt
     4321 cctgactatt gtttgggcta tttggtattt tctatgggga tatcctttaa attctttttc
     4381 aagtataggt caatataatg aagaagtagc aactcataat acaaaatttg aagaaaaatt
     4441 taaaaattta tctcctgaag ataaaatagc aatgggtcaa aatatctttt tagttcagtg
     4501 ttcggcttgt catggaatta caggagatgg tatcaatggt aaagctcaaa atttaaatat
     4561 ttggggtagt gaagaaggta taatcaatgt aattaaacat ggttcaaaag gtatgaattt
     4621 tccaggtgga gaaatgcttg gtgctgctga tttaggtgta gcagaagaag atatccctgc
     4681 tattgctgct tatgtagcaa aagatctttc agctattaag aaaactgcaa atgaaaattt
     4741 agtagcaaaa ggtaaagaag cttatgcaac ttgtgcagca tgccatggag aagatggaaa
     4801 aggtcaagat ggaatgttcc cagatcttac aaaatacggt tctgcagctt ttgtagtaga
     4861 tgttttacat agtggtaagg ctggttttat aggaacaatg ccgagttttc caacacttaa
     4921 tgatattcaa aaagaagctg ttggcgagta tgtaatttct ctttcaaggg gtgaatgatg
     4981 gaaaataata atagatgcgt gttttctctt tcaggtgtta caggtatgtt aattgctacg
     5041 gttttgttgc ttgttatctt agcagtttta actatttggg gtcttaaagc tcagcaagaa
     5101 gtgatgcaaa agccatatag tcttaaagat gtacaaagtg taaagatgtt tggttcaaaa
     5161 gaacaagatc atagaagtat aaaggaagca caatgagtaa ggctttggaa tatttaattg
     5221 ttattggttt agttgttgct gctgcaatca ccgcttggtc ggttttgacc gtaaatcatc
     5281 ttcatatagg atgaaaaaaa tattacaaga tggctttttt ttagctatct tcttctttgt
     5341 tttattgcct tctagggttt ttgctcttga tgctgtactt tttaatgaaa atattttaag
     5401 tcaaaaagta agtaacgaga ttaatcttat aggaaaagag ctttaccaaa aaagtaatat
     5461 ttttatcggc gttatggttg gtgataaaac tgaaattgaa actttattaa ataaacaaaa
     5521 agaacttcct caatcttata tattgcttct tttgtcaaaa aattctcaca aagttgatat
     5581 agtaggctca aaaggtgctt tagctttgat tgataaagaa gctgtgctta gtccttatcc
     5641 tggaacagga tctattttgc cgatattagc tacaaataaa ggtgatattt ataatgctgc
     5701 tatacttaat ggttatgcag atattgtaga tcgtgtggca aaatccttgg gattacaatt
     5761 agaacattct ataggtaatg caaatcgtga tactatcaat attttaagaa tacttatcta
     5821 tggatttatt tgctttgcat tgttatacta tgcacaaaga agaataaaga ggaaaaaaaa
     5881 tgttagaaac taaaaaaagt ttttggcctt atggtatttt gctttcactt ttggctataa
     5941 ttattgcttg tattgtaacg atttttatag caagtcacca tcctgtgtat gaggatgatt
     6001 tttattttga ctcttatcaa aatgttgaaa ataattacaa tcaaatacaa aaacaacaag
     6061 taaattttga taaatttttt aaagtaaatt ttcaaaatga taaaatcact tttataggta
     6121 aaagaaaaat tcctagttat gaagtggatc aaaattccta tgttgcaaat tttaaaattt
     6181 ctgcattaca aaatataaat tctgatgatt taaaagttca agttcttctt acaagaccat
     6241 tcactaaaaa ttttgatcaa aagttagaag gacaagttaa aaatggaatt ttaagtatcg
     6301 ctttacctaa attagataaa ggtagatggg agcttaagct aaagttttat gcaaatcaag
     6361 aaacagtggg tttttttagc tacgaattaa atgctcaatg aaattaagaa tttttagctc
     6421 ttcaaggcaa attagagaat attataatca aaaaaaacag caaaatgctt tattagatag
     6481 tgctattcat ataggtgaat ttttagataa agtttgtttg agcaattttc acaaagcaag
     6541 ttcttatgaa agtttgcttt taatgcaaga agcttgtcta aaaagtaagg attt
//
LOCUS       DAPOLW010000096         6484 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.096, whole genome shotgun sequence.
ACCESSION   DAPOLW010000096 DAPOLW010000000
VERSION     DAPOLW010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6484)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6484)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6484
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.096"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            1..564
                     /locus_tag="ROE18_001331"
     CDS             1..564
                     /locus_tag="ROE18_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006015883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDX3651504.1"
                     /translation="MLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHIDQGYD
                     PKEEIQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHENPSKN
                     YGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGMKALPT
                     FMCNDVVKNPQVEKYLNEYELHLKKIF"
     gene            597..1493
                     /locus_tag="ROE18_001332"
     CDS             597..1493
                     /locus_tag="ROE18_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDX3651505.1"
                     /translation="MTRTKYLYILLVIAMFLWGSSWPTSKILANYTDTSIITFWRFFF
                     VVLGSFFVLNFLKIPLKIEKTALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTT
                     MIPIFSYLIFMIAIFFQKNKKSTHKITKSEILGLFLGLLSGFCLLNLGSLEDLFGKFN
                     ILFLTCSFIWALMAVFNHKAKGAHPLAINFYINLISILMFSWILFDVKSYEIFHFEFK
                     FWISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNAL
                     TLLGCALAIGAIYFINIYGKKA"
     gene            complement(1490..2455)
                     /locus_tag="ROE18_001333"
     CDS             complement(1490..2455)
                     /locus_tag="ROE18_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HDX3651506.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGIELCLKGGKYEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILE
                     LDLAKIGFRGYLCVAGGFEVKSFLNSKSSDAKMGAGVFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSPKEPIIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAE
                     SSESIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(2436..3176)
                     /gene="pxpB"
                     /locus_tag="ROE18_001334"
     CDS             complement(2436..3176)
                     /gene="pxpB"
                     /locus_tag="ROE18_001334"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HDX3651507.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEI
                     YGIDELVSAYASLLIYFNPCVLSLNSLLDFLEKIKKDIKLAEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFDIQEQVAKKVYQKEIYEYKNH"
     gene            complement(3186..3953)
                     /locus_tag="ROE18_001335"
     CDS             complement(3186..3953)
                     /locus_tag="ROE18_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HDX3651508.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDETLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNAKALEFVKKIKENLKKEQIQICALENFI"
     gene            complement(4095..4904)
                     /locus_tag="ROE18_001336"
     CDS             complement(4095..4904)
                     /locus_tag="ROE18_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDX3651509.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKGFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD"
     gene            4983..5669
                     /locus_tag="ROE18_001337"
     CDS             4983..5669
                     /locus_tag="ROE18_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDX3651510.1"
                     /translation="MDYIFDGFKQALFLLFNADESVISAIKTTLLSSSISIVLALLIG
                     FPLGFILGFFEFKLKRFIKLIVDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKA
                     LILGQFILALPIVIALFSNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVV
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCL
                     NFITHKLKRT"
     gene            5671..>6484
                     /locus_tag="ROE18_001338"
     CDS             5671..>6484
                     /locus_tag="ROE18_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDX3651511.1"
                     /translation="MIEISNLFFNYQNKEVLKIKNLKLDTSKISILMGANGSGKSTFL
                     RILKFLEGDFSKNISYFGNFKPNNKQKREIYLLFPEPILLNRSVRANFLFTLKTYGIK
                     EDIEERIKESLMFLNLDESLLSKHPNELSSGQSQKIAFAIALSVRAKYYLLDEPSAFL
                     DKNTTLLFKKTILKMHENFNTGFLIASHDKHFLDSLAQKKLYLHSGEILEFENTNVFE
                     LENQGVKFCNFIDFSNCKKYKDFKKPPSKIAIDPYKISFFNSKNIPKNNYDFI"
BASE COUNT         2095 a         1017 c          944 g         2428 t
ORIGIN      
        1 ttgcttaatg gtgctaaaga atttggaaat tcaaaaggac aacttaattt gacattgcat
       61 aatcatgctt tagaaatttt aaaaacacta ggatacgagg tagatcaaac tcacatagat
      121 caaggatatg atcctaaaga agagatacaa aaatttataa aagctgatgc tgtgatctat
      181 caaatgccag cttggtggat gggggagcct tggatagtta aaaaatatat cgatgaagtg
      241 tttggtttgg gtgctggagt gctttttaaa aatgatggaa gaactcatga aaatcctagt
      301 aaaaactacg gaaaaggtgg tttagatcat ggtaaaaaat acatgttttc tctcacttgg
      361 aatgcacctc ttgaagcctt taatgataaa aatgaatttt ttgaaggaaa gggtgtagat
      421 atggtgtatt ggcatttgca taaggctcat gaatttatag gtatgaaagc tttaccaact
      481 tttatgtgta atgatgtggt aaaaaatcct caagtggaaa aatatctaaa cgagtatgaa
      541 ctacacttga aaaaaatttt ttaaaaaatt tgacttaaaa atttcaaggt gtaacattga
      601 ctcgaacaaa gtatttgtat atcttgcttg ttattgctat gtttttatgg ggctcatctt
      661 ggccaacatc taagatttta gcaaattata cggatacttc tattattacc ttttggcgtt
      721 ttttctttgt tgtattgggt tcattttttg ttttaaactt cttaaaaatt cctcttaaaa
      781 tcgaaaaaac tgccttaaaa tgggtattga tagcaggagt tttaaatggg ctttatgcct
      841 ttgtattttt tattgctata aagcacggct tggcaggcaa aggaggagtt ttagtaacca
      901 ctatgattcc tattttttct tatttgatat ttatgatagc gatatttttt caaaaaaaca
      961 aaaaatcaac tcacaagatc acaaagagtg aaattctagg cttattttta ggtttattat
     1021 ctggattttg tttgctaaat ttagggagtt tagaagattt atttggtaaa tttaatattt
     1081 tatttttaac ttgttctttt atttgggctt tgatggcagt gtttaatcat aaagccaaag
     1141 gagctcaccc tttggcgatt aacttttata ttaatctcat ttctatttta atgttttctt
     1201 ggatattgtt tgatgtaaaa agttatgaaa tttttcattt tgaatttaaa ttttggatca
     1261 gtatgtttgt cgtggctttt ttatcaacta ttataggaac tagtatttat tattatggga
     1321 ttcacatttt aggaagcgtt aaggcaaatt cttttgtttt aatcactcct gctagtgctt
     1381 taatttgtag ttattttata ctagatgagg tgccaaatgc acttaccttg ttaggttgtg
     1441 ccttggctat aggtgctata tattttatca atatttatgg caaaaaagct tagattaaat
     1501 tttcaaaatc aagattgatt ttttgatcca tagctttaaa tttcatttct ctttgtttat
     1561 aaagttctaa ggcttcttgc atgctaatgc tttgaaattt aaagctagaa cctaacttag
     1621 cttgtgcgag taagcttaga tcattttcta taaccgtggc tatttttgta tagcctcctg
     1681 tgctttgtct tcctgccatt aaaatgatag gaataccact ttttggcact tgtatacttc
     1741 caaaaaccgc aggatctgag atgatatctg ctgagttttt atgctctata ctttcactag
     1801 attctgcata aattgccatt ctatcgcttt ttaaacctac tttataagta gtatttaaaa
     1861 aggtttctat gcctttttgg gtaaaagcat cttcatttgt tcctaaaata acgcgtataa
     1921 taggctcttt agggctttta aaaagaggat tttcacattc tctagcttct aaattaaaag
     1981 gtataaaagt attatgagta tttaaaatat catctttttg caaagctctt ccttcaaaaa
     2041 ctccagctcc cattttagca tcactggatt tagagtttaa aaaacttttt acttcaaagc
     2101 cacccgctac gcataaatac ccacgaaaac ctatttttgc taaatcaagt tctaaaatat
     2161 cgcctttatt tgcttgatat actttgcaag ttttgatttt ttgattatca agctttgcct
     2221 caaattcagc tccacttaaa acaaaataat tctcatctaa aaattcgtat tttccaccct
     2281 ttaaacaaag ctcaattcct gcttcatctt gtttgtttcc aagcaagata tttgccattc
     2341 ttaaagcatc ttcatccata gctccacttc ttgctatgcc aaatttagca aatttttttc
     2401 taccaaagtc ttgcaaactt gaatttatag atgcttcaat gatttttata ctcataaatt
     2461 tccttttgat agactttttt agcaacttgc tcttggatat cgaaaaattc atcttttgaa
     2521 atggctttaa attttaaaaa catacccgct tttaaaagag tgggattttt ttcatcttct
     2581 ttatcaaaaa attccaaagg tgttctagca atgatttgcc aaccccctgg acttgatatg
     2641 ggataaactc ctgtttgttt atcggctata cctacacttc cagcttctat ttttgctcta
     2701 gggcttgaaa ggcgtggggt aaaaagtctt tcatctaaac ctccaagata aggaaaacct
     2761 gccataaaac ctagcataaa aacaagataa taaggtttag tgtgaagaga tataagctct
     2821 tcttttgaaa tttgattgtg tttgcacaca aattctaaat ccagcccaaa ttcttcatca
     2881 taacaaagtg gaacttctat acaaagactt gagttttgtt ctgcaagttt aatatccttt
     2941 ttaatttttt ccaaaaaatc aagcaaggaa tttaaagaaa gcacgcaagg attaaaatat
     3001 ataagcaagc ttgcataagc acttaccaac tcatcaatcc cataaatttc accttctttt
     3061 agggcttttt gtatcctttg ttctgtgctt aaaacatagg cattgatttg aggtgaaatt
     3121 tcttgctcaa aacgcaaaag caaagcttta cttccactaa aatgcacact aaacattgct
     3181 aaaacttata taaaattttc caaagcacaa atttgaattt gctctttttt taaattttct
     3241 ttgatttttt taacaaattc taaagctttt gcattatccc catgaacaca aatactatcg
     3301 gcttttaaat caatttcttt gccatttatg cttgtaactt tgctttcttt tatcattttt
     3361 atcacgcgtt tgatagctaa attttcatcg tgtattaacg ccccttctaa ttttcttgaa
     3421 actaaagtgc catcatcatt ataggcacga tctgcaaaaa cttcattagc atatcttaaa
     3481 ccctttttct tagctgcttc attcatagca gaattactaa gccctagaaa aataatattt
     3541 tcatcaaaac tcgccactgc ctcacaaagt gctaaggcta aattttcatc aatagctgcc
     3601 atattataaa gcgccccatg ggctttaaaa tgctgtattt tcataccttt tgccttagca
     3661 aagccaaata aagctcctag ttgatacaag gcatagtttt tagcctcttc aaagcttatt
     3721 tgcatattgc gtcttccaaa acccaaaaga tcaggataag atggatgtgc tcctatgcaa
     3781 acaccatttt gcttggctaa atttaaggtt tcatccatca cacaaggatc acccgcatga
     3841 aagccacaag cgacatttac tgaacttaca aattttaaaa tttcttcatc cattcccatt
     3901 ttataggcgc caaaactttc ccctaaatca ctatttaaat ccactttgaa cattatttga
     3961 ccttgtatat ttaattattg attttattat atctaaagaa gaattttaaa taagctaaaa
     4021 gttttgaaaa ataaataaaa aagttacaat aagtaaaaaa tgatatttta agcaggttaa
     4081 aacctgctta atttttagtc ttttcttgtt tttgcatcaa ttacaaataa aggtttatta
     4141 agaagtttaa aatcagcaat gaaatttaaa gtcttatcac ttgttaccca tttgataaat
     4201 ttactagctt ctgtataatt tacattttta caatgcttag gatttgtcgc tataacagaa
     4261 taaaaatttt taagactatc atcgccttca tttacaatga ctaagtttgg tttgcctttt
     4321 tcattggctt catatttgat ataagtacca cgatcggtta aaatcacacc ttttttttct
     4381 tcagcgattt taatgcttgc taacatacct tgtccgcttt gttgatacca gctttgcttt
     4441 tcaggaacac cgccaagatt tttccaaagg cttttttctt tattgtcagt gcctgattta
     4501 tcgcctcttg agatgaaagt aagcttttca tttttgataa gttctaagct ttcttttaaa
     4561 tttttacctt taaatttaga agctaaagat ttatctgcga tgatgataaa atcattatac
     4621 atcacaggag ttctatctac accaaagcct tttttcataa attctttttc agcctttgga
     4681 gaatgcacaa aaagcacatc agcattgcaa tcttcaccca tttttaaagc cgcacctgtt
     4741 cctacggcaa cccattttaa ggtattgcca ctttcttttt cataaagagg ttttagagca
     4801 tctaaaagtc ctgtattgtc agtgcttgtt gtagttgcca ttttaagttc tgctgcactt
     4861 gcacttaaag ctaaagcaag ggctaaagaa atgatttttt tcattttttt tccttataaa
     4921 tttatataaa aaaatatttt agcataatta tgctaaaatt acttatttta aaaaggatat
     4981 ttttggatta tatttttgat ggttttaaac aggctttatt tttacttttc aatgctgatg
     5041 aaagcgtaat ttcagctata aaaactacac ttttaagctc aagtatttct atagttttag
     5101 ctttgcttat aggttttcct ttgggattta tcttaggttt ttttgaattt aaattgaagc
     5161 gttttataaa acttatagtt gatactagcc tttcttttcc aacagttgca gtaggactta
     5221 tactttatgc actgatttca agtcgaggac ctttgggaga atttggattg ctttttacta
     5281 taaaggcttt aattttaggg cagtttatct tagcgcttcc tatagtgatc gcactttttt
     5341 caaatttgat agaaaatatg aataaaaaac attttttact tataaaatct tttcacctaa
     5401 gtcctttaaa acttgtttta acgatgattt atgaattacg ctttgctttg attagcgtcg
     5461 ttgcactagc ttatggacgc attgtagcag aagtaggagt agcgatgata gtaggtggaa
     5521 atatcaaata cgatactaga accataacca cagctatttc tcttgaaaca aacaaaggcg
     5581 aatttgctag cggtatagct ttggctttgg ttttaattct cattgccttt tgtttaaatt
     5641 tcatcacgca caaactcaaa agaacataaa atgatagaaa tttctaatct ttttttcaac
     5701 tatcaaaaca aagaagtttt aaaaatcaaa aatttaaaac ttgatacaag taaaattagc
     5761 atcttaatgg gagcgaatgg aagtggaaaa tctacatttt taagaatatt aaaattttta
     5821 gaaggagatt tttcaaaaaa tatttcttat tttggaaatt ttaaacctaa taataagcaa
     5881 aagcgtgaaa tttatttgct ttttccagag cctattttgt taaatcgtag tgtaagggca
     5941 aattttttat ttaccttaaa aacttatggg attaaagaag atattgaaga acgcataaaa
     6001 gaaagtttga tgtttttaaa tttagatgaa agtcttttaa gtaaacatcc taatgaactt
     6061 tcatcaggac aaagtcaaaa aatagctttt gctatagctt taagcgtaag agcgaagtat
     6121 tatttacttg atgaaccaag tgcttttttg gataaaaata ctacactttt atttaaaaaa
     6181 actattctta aaatgcatga aaatttcaat acaggttttt taatcgcaag tcatgataaa
     6241 cattttttag attctttggc gcaaaaaaaa ctttatttgc acagtggaga aattttagaa
     6301 tttgaaaata ctaatgtttt tgaactagaa aatcaaggtg tgaaattttg taattttata
     6361 gattttagta attgtaaaaa atataaagat tttaaaaaac ctccaagcaa aattgctatt
     6421 gatccttata aaatttcttt ttttaattct aaaaatattc caaaaaataa ttatgatttt
     6481 attt
//
LOCUS       DAPOLW010000097         6423 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.097, whole genome shotgun sequence.
ACCESSION   DAPOLW010000097 DAPOLW010000000
VERSION     DAPOLW010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6423)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6423)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6423
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.097"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            16..441
                     /gene="rplM"
                     /locus_tag="ROE18_001339"
     CDS             16..441
                     /gene="rplM"
                     /locus_tag="ROE18_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HDX3651512.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            444..833
                     /gene="rpsI"
                     /locus_tag="ROE18_001340"
     CDS             444..833
                     /gene="rpsI"
                     /locus_tag="ROE18_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HDX3651513.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            958..1917
                     /gene="cadF"
                     /locus_tag="ROE18_001341"
     CDS             958..1917
                     /gene="cadF"
                     /locus_tag="ROE18_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HDX3651514.1"
                     /translation="MKKIFLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRATPQAKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            1917..2558
                     /locus_tag="ROE18_001342"
     CDS             1917..2558
                     /locus_tag="ROE18_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDX3651515.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLAYREIYAQIYLEQTTLLPKAKEALELGSEIADL
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITLEDVTNPKPSSEPIILALKGLNKTQENAY
                     MIGDTILDIQAAISANITPLALTCGYGNENELKAHSMVFLNAYEAVNYIARLN"
     gene            2651..6211
                     /gene="nifJ"
                     /locus_tag="ROE18_001343"
     CDS             2651..6211
                     /gene="nifJ"
                     /locus_tag="ROE18_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HDX3651516.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLAA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPECVIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIIDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKETTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYTHLIKAITAAEAYDGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            6235..>6423
                     /locus_tag="ROE18_001344"
     CDS             6235..>6423
                     /locus_tag="ROE18_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HDX3651517.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIILDKVKIYDRWYK"
BASE COUNT         2243 a          907 c         1258 g         2015 t
ORIGIN      
        1 gcaaaggtaa aaattatgac aaagataaca aagccaaacg aagtaaaacg agaatggatt
       61 gttttagacg cagaaggcaa acgctttggt cgtcttttaa ctgaagtagc aacaattttg
      121 agaggtaaaa acaaaccttg ctttactcca aatgttgatt gtggtgatta tgtaattatc
      181 atcaatgctt caaaagctgt atttacaggt gctaataaag cagaagataa gctttatcat
      241 agacattcag gatattttgg aagtgtaaaa agcgaaaaat ttggtgattt acttgaaaaa
      301 aatcctgcaa aattatataa attagcagtt agaggtatgc ttcctaaaac aaatttgggc
      361 agagctatgc ttaaaaaatt aaaaatctat gcgggtagtg agcacccaca cactgcacaa
      421 attgctaaag aaggaaaata atcatggcaa caacatacgc aacaggtaag agaaaaactg
      481 ctatcgcaaa ggtatgggta aaaccaggta gtggtaaaat tagtgttaat ggtgttgatt
      541 taaacacttg gcttggtgga cacgaggcga ttaagcttaa agtggttcaa cctttacttg
      601 tgactaaaca agaaacttca atggatatta aagcaactac tttaggcggg ggctatagtg
      661 ctcaagctga agctttaaga catggaattt caagagcttt agcagctatg gatgctgatt
      721 ttagagcctt attaaaacct aaaggacttc ttactagaga tagtagaact gttgagcgta
      781 aaaaatatgg acgccgcaaa gcaagaagaa gcccacaatt ctctaaacgt taatattttt
      841 ggtgggattt tcccaccttt ctacaatttt ttataaaact catccttttt tctatcattt
      901 atgttataat tgcaaaattt aaatttttat tttataacac aatgaaaggt tttttctatg
      961 aaaaaaatat tcttatgttt aggtttggca agtgttttat ttggtgctga taacaatgta
     1021 aaatttgaaa tcactccaac tttaaactat aattactttg aaggtaattt agatatggat
     1081 aatcgttatg caccagggat tagacttggt tatcattttg acgatttttg gcttgatcaa
     1141 ttagaatttg ggttagagca ttattctgat gttaaatata caaatacaaa taaaactaca
     1201 gatattacaa gaacttattt gagtgctatt aaaggtattg atgtaggtga gaaattttat
     1261 ttctatggtt tagcaggtgg aggatatgag gatttttcaa atgctgctta tgataataaa
     1321 agcggtggat ttggacatta tggcgcgggt gtaaaattcc gtcttagtga ttctttggct
     1381 ttaagacttg aaactagaga tcaaattaat ttcaatcatg caaaccataa ttgggtttca
     1441 actttaggta ttagttttgg ttttggtggc aaaaaggaaa aagctgtaga agaagttgct
     1501 gatactcgtg caactccaca agcaaaatgt cctgttgaac caagagaagg tgctttgtta
     1561 gatgaaaatg gttgcgaaaa aactatttct ttggaaggtc attttggttt tgataaaact
     1621 actataaatc caacttttca agaaaaaatc aaagaaattg caaaagtttt agatgaaaat
     1681 gaaagatatg atactattct tgaaggacat acagataata tcggttcaag agcttataat
     1741 caaaagcttt ctgaaagacg tgctaaaagt gttgctaatg aacttgaaaa atatggtgta
     1801 gaaaaaagtc gcatcaaaac agtaggttat ggtcaagata atcctcgctc aagcaatgac
     1861 actaaagaag gtagagcgga taatagaaga gtggatgcta aatttatttt aagataatga
     1921 ataaaactat tttatttgat ttagatggca ctttaattga ttctactgat gctattttaa
     1981 attctttcca aggagctttt aaagcccttg gattaacttc taaaaataat gaagaaatca
     2041 aaaatctcat aggttatcct ttagagcaaa tgtttagaat gctttatcca gataaagtaa
     2101 atttaagtaa agaatttgta ttagcttatc gtgaaattta tgcacaaatt tatttagaac
     2161 aaaccactct tttgcctaaa gcaaaagaag cattagaact tggaagcgaa attgcagatc
     2221 ttggtatagt tacaacaaaa ggaggtaaat ttactccgat tctgcttgat tatttgggag
     2281 ttaaaaaatt ctttaaaact ttaattactc ttgaagatgt cacaaatcca aagccaagtt
     2341 ccgaacctat aattttagcc ttaaaaggac tcaataaaac tcaagaaaat gcctatatga
     2401 taggcgatac aatattagat attcaagctg caatttctgc taatatcact cctttggcct
     2461 taacttgtgg ctatggcaat gaaaatgaat taaaagctca ttctatggta tttttaaatg
     2521 catatgaggc tgttaattat atagctagat taaactaatt tcaagttttc gttaaacgcc
     2581 ttttaagaga atttatagta aattgatagt taaaaaatta taaaaattat caatataaag
     2641 gaaggtctca atgggtaaaa ttatgaaaac tatggacgga aatgaggctg ctgcatacgc
     2701 tgcgtatgct tttactgaag ttgctggaat ttatcctatt acacctagtt ctcctatggc
     2761 tgattatacc gatatgtggg cagctgcagg aaaaaaaaat ctttttggag ttcctgtaaa
     2821 aatcgtagaa atgcaaagtg aagcaggagc tgcaggtagt gtgcatggat ctttacaagc
     2881 tggggctttg actacaactt atacggcttc tcaaggatta ctccttaaaa ttccaaatat
     2941 gtataaaata gcaggtcaat tactcccctg tgtaatccat gtagcagcgc gttctttggc
     3001 tgctcaagct ttgtctatct ttggtgatca tcaagatatt tatgcagcaa gacaaattgg
     3061 ttttgctatg ctttgttcgc attctgtgca agaaaccatg gacttagctg gtgtagcaca
     3121 tttagctgca attaagggaa gagtgccatt tttacatttt tttgatggtt ttagaacaag
     3181 ccatgaaatt caaaaagttg aagtaatgga ttatgcgcat tttgatagat tattagatag
     3241 agaagctttg cttgaattta gaaataatgc tttaaatcca gaaaatccaa aaacacgtgg
     3301 aacagcacaa aatgatgata tttattttca aactagagaa gtaagcaatc gtttttacga
     3361 tgctttacct gatgttgtta atgaatatat gcaagaaatt tcaaaaatta caggtagaga
     3421 atacaaacca tttacttatt atggtcacaa agagccagag tgtgtgattg ttgctatggg
     3481 ttctgtaact caagcacttg aagaagtggt ggactatctt aatgccaagg gtgaaaaggt
     3541 agggatttta aaagtttatc tttatcgccc atttagttta aaatatttct ttgatgttat
     3601 gccaaaatca gtgaaaaaaa tcgcggtttt agatagaacc aaagaaccag gaagtctcgg
     3661 agaaccactt tatcttgatg taaaatcagc tttctatgga agagaaaatg ctcctgttat
     3721 agtgggtgga agatacggac tttcttcaaa ggatgttgat cctgctcaaa tgatagcagt
     3781 atttgaaaat cttaaacttg ataatccaaa agatggcttt actgtaggta taattgatga
     3841 tgtaactcat acttcactga gtactggaga gaaaatttca cttggagatg aaagtacgat
     3901 cgaatgttta ttttacggac ttggtgctga tggaactgtg ggtgcaaata aaaactcgat
     3961 taaaatcatc ggagataaaa cggattttta cgctcaagct tattttgctt atgattctaa
     4021 aaaatcaggg ggttatacaa gaagccattt aagattttct aaaaaaccta tccgttcaac
     4081 ttatcttgtt tcaactccgc attttatcgc ttgttcggta gcggcttatt tggaaattta
     4141 tgatgtttta gcaggaattc gcaaaggagg aactttcctt ttaaatagta tttggaatgc
     4201 tgaagaaacc ataagacaac ttccagatgc agtaaagaaa actttagctg aaaaagaagt
     4261 aaatttttat atcatcaatg caaccaaact agctcgtgat ataggtttgg gaaatcgtac
     4321 aaataccatt atgcaatcag cctttttcaa acttgcaaaa atcattcctt atgaagacgc
     4381 acaaaaatac atgaaagagc ttgcgtataa atcttatagt aaaaaaggcg atgctattgt
     4441 agaaatgaat tacaaggcta ttgatgtggg tgctgatgga cttgtaaaag ttgaagtgga
     4501 tccaaattgg aaaaatttag agcttaaaga aaaagaacaa accaatgcct ataaaggtac
     4561 tgaatttgtt gaaaaaatcg taaaacctat gaatgcggct aagggtgatg atttacctgt
     4621 ttcagccttt ttaggttatg aagatggaag ttttgaacac ggcacaaccg aatacgaaaa
     4681 acgcggtgtt ggggttatgg taccaagatg gatagaggca aattgtattc aatgcaatca
     4741 atgtgcttca gtttgtccgc atgctgttat caggccattt ttgattaatg atgaagaaat
     4801 ggcaaatgca cctcgcggtg taaaagatca tgctttagaa gctaaaggaa ccaaaggaga
     4861 aaaattaagc tttaaaattc aagtttctcc acttgattgt acaggctgtg agctttgtgt
     4921 tcatgagtgt cctactaaag aaaaatcttt ggttatggta ccacttcaag aagagatgga
     4981 ttttggtgag caagaaaatg cggattattt atttaaagaa attacttata aagatgatat
     5041 tttaaataaa gaaaccacaa aaggagcgca atttgcccaa cctttatttg aattccatgg
     5101 ggcatgtcct ggatgtgggg aaactcctta tattacttta attacaagat tgttcggtga
     5161 aagaatgatt gtggctaatg ctacaggttg tagttctatt tatgggggtt cagctccatc
     5221 aactccttat agaaaaagtg tgaaaaatgg acacggtcct gcttggggaa attcactttt
     5281 tgaagacaat gctgagtttg gtttgggtat gaaaattgca actgaaaata caagacaccg
     5341 cattgaacat atcatgaatg aaagtatgca agaagttcca aatgctttat cagctctttt
     5401 taaagattgg attgcaaata aagacaatgg tgctatgtct gtggaaatta aagataaaat
     5461 gatccctatt ttagagcaaa ataaaaatat taaagctgta caagatatat tagagcttaa
     5521 acagtattta agtaaaaaat ctcactggat ttttggtggt gatggttggg cttatgatat
     5581 aggctatggc ggacttgatc atgttttagc aagtggagaa aatgtaaata ttttagtgct
     5641 tgatacagaa gtttattcta atacaggcgg tcaaagttca aaatcttcta gaacaggagc
     5701 tgtagcacag tttgcagcag caggcaaacc tatacagaaa aaagatctag gtcaaattgc
     5761 tatgacttat ggttatattt ttgtagcaca agtaaattca acggcaaatt atactcatct
     5821 tatcaaagct atcactgcag ctgaggccta tgatggacca tctttggtga tttgttattc
     5881 tccttgtata gctcatggta ttaaaggtgg gctgggttac tcaggagagc aaggtgagct
     5941 tgctacaaaa tgtggttatt ggccacttta tacctttgat cctcgtttag aagagcaagg
     6001 aaaaaatcct ttaactctaa caggaaaaga acctgattgg gatttatatg agcaattttt
     6061 gatgaatgaa gtgcgttata attcacttaa aaaagcaaat cctgaacacg ctgctgagct
     6121 ttttgaacgc aataaaaaag acgctcaacg tcgctataga cagcttaagc gtattgctat
     6181 ggctgattat agcaatgagg tcgaaagctg ataaaatata tttttagtgc tacattgtgt
     6241 tttagcactt tgtttgcaca agataatttt gaagagtatt ttaaacttat agataaagaa
     6301 aatcgtataa attttaatac tcttcaaaac ccatttgtga atcctacttt tgaaaaatta
     6361 agacatatta aaattactgc aattatactt gataaagtaa aaatttatga tcgatggtat
     6421 aaa
//
LOCUS       DAPOLW010000098         6321 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.098, whole genome shotgun sequence.
ACCESSION   DAPOLW010000098 DAPOLW010000000
VERSION     DAPOLW010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6321)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6321)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6321
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.098"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            9..1115
                     /gene="rseP"
                     /locus_tag="ROE18_001345"
     CDS             9..1115
                     /gene="rseP"
                     /locus_tag="ROE18_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HDX3651518.1"
                     /translation="MRSLLFLIVILILGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTNYRLSTLPLGGYVKLKGQDDMRPGFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLNKLAPQIGNIAPNSAAQEIGLQ
                     KNDTILEINGIRIQTFDEISKHLSLDPLKILINREGKNLEFILTPKIGQGYNDFGQIV
                     EKPQLGVSPNGTSTLVKHQGLESFKYAAQESFQASTLIIKGIVKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKV
                     PQRTFEYLSYTGMAILLSLMLFATYNDISRIIGE"
     gene            1108..1974
                     /locus_tag="ROE18_001346"
     CDS             1108..1974
                     /locus_tag="ROE18_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HDX3651519.1"
                     /translation="MNKKFSYPIPNFTDRRKSIIFWRYLRFQARKILYFPQVRLLEKT
                     LNKEKNKHLKDFFSQRPYACYNATRRFCDKSFKANERVKTLIYDVDKGLACFKFLPEE
                     QIIFSFDEDFELFLGYNYNVCEEGFWAFSLKFKKYTILQCNFCFTLENNLLLSCIQGH
                     KYKDFNILEINKILTKKCHGLRPVALLIECSKMLCEILKLQTTLGVHEKNQIRSQKGK
                     EKGYFVDYQKIWLENGGELIKINKHKYYKLHHSQKNLEEIPSQKRSMYKKRFAMLEEI
                     KTNLDKTLSIQD"
     gene            2061..2435
                     /locus_tag="ROE18_001347"
     CDS             2061..2435
                     /locus_tag="ROE18_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HDX3651520.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLTKNSAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEI"
     gene            2447..2995
                     /locus_tag="ROE18_001348"
     CDS             2447..2995
                     /locus_tag="ROE18_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDX3651521.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKR
                     EETCFIDISFYGRTAEVANQYLAKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNVPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
                     HEEKLKEIDIDAYDSDDTNLPF"
     gene            3006..3266
                     /gene="rpsR"
                     /locus_tag="ROE18_001349"
     CDS             3006..3266
                     /gene="rpsR"
                     /locus_tag="ROE18_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HDX3651522.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(3326..5701)
                     /gene="lon"
                     /locus_tag="ROE18_001350"
     CDS             complement(3326..5701)
                     /gene="lon"
                     /locus_tag="ROE18_001350"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HDX3651523.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDSSNMKALDL
                     AIKNDSMLFVAPSKLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFVLTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDVPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLRDRMEFIELSSYTPSEKF
                     HIMKKYLIPDELKKHGLKSNELFIDDETIELIISDYTRESGVRNLRRKVAELCRKSAK
                     KLLLENIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTSVGGDVLKVEAV
                     KIKGKGELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIIIDPKVNVYDSYNI
                     HIHVPDGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLKGKVLPIGGLKEK
                     LIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVLEYTLV"
     gene            complement(5718..>6321)
                     /locus_tag="ROE18_001351"
     CDS             complement(5718..>6321)
                     /locus_tag="ROE18_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HDX3651524.1"
                     /translation="SACSTKNDEGLYNLSASEWYKQIIKDLQDKDLEKADDHYNGMAS
                     EHVADPLLETTLIILAQAHMDEEEYKLAEFYLDEYNKKFGNSRNADYIRYLKIKAKFD
                     AFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFNLAVFYLNSTIENLYQ
                     RIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
BASE COUNT         2202 a         1020 c          868 g         2231 t
ORIGIN      
        1 ggagaaaaat gagatcttta ttatttttaa ttgttatttt gattttggga attaaatttt
       61 attctattga atttttagca actgttttag tcatctcatt tttaattttc tttcacgaat
      121 taggacattt tttggctgca agatctttgg gtgtaaaagt tgaagttttt agtataggat
      181 ttggaaaaag tcttatagag cgtgaattta aaggcacaaa ctatcgctta agcactttac
      241 cacttggagg atatgttaaa cttaaaggac aagatgatat gcgtcctggt tttgaaaatc
      301 tagacaaaga tagctatagc attttaagtc ctttaaaaaa gatttatatt ctttttgctg
      361 gaccattttt taatctaatt ttagcttttt ttctttatat tatcatagga aatttaggtc
      421 taaacaaact tgctccgcaa ataggaaaca tagcgccaaa ctctgctgca caagaaatag
      481 gacttcaaaa aaatgatact atcttagaaa ttaacggtat aagaattcaa acctttgatg
      541 aaatttcaaa gcatttaagt ttagatcctt tgaaaatatt aatcaataga gaaggaaaaa
      601 atttagaatt tattttaact ccaaaaatag gacaaggata caatgacttt ggacaaatcg
      661 ttgaaaaacc tcaacttgga gtcagtccaa atgggacaag cactcttgta aaacaccaag
      721 gtttagaaag ttttaaatat gccgcacaag aaagttttca agcttctaca ctcatcatca
      781 agggtattgt aaaactcata agtggtgaag ttgaagcaaa aaatttaggc ggtattatca
      841 ccatgactga aattacctca aaggctgcac aaaatagctt tactttgctt ttatttatca
      901 ctgctttaat ttctataaat ttaggcattt taaatctttt acctattcct atgcttgatg
      961 gaggacatat actttttaat ctttatgaaa tgatttttag acgcaaagtt ccacagcgta
     1021 cttttgaata tttaagctat acaggcatgg caatactttt aagtttaatg ctctttgcaa
     1081 cttataatga tatatcaagg attataggtg aataaaaaat tttcctaccc tattccaaat
     1141 tttactgata gaagaaaaag tataatcttt tggcgctatt tgcgttttca agcaagaaaa
     1201 attttatatt ttcctcaagt aagacttcta gaaaaaacgc ttaataaaga aaaaaataaa
     1261 catttaaaag actttttctc tcaaagaccc tatgcttgtt acaatgctac aagaagattt
     1321 tgcgataaaa gttttaaagc aaatgaacgt gttaaaacac ttatttatga tgttgataag
     1381 ggactcgctt gttttaaatt ccttcccgag gaacaaataa ttttttcttt tgatgaagat
     1441 tttgagcttt ttttaggata taactataat gtttgcgaag aaggtttttg ggctttttct
     1501 ttaaaattta aaaaatacac aatcttacaa tgtaattttt gctttacttt agaaaacaat
     1561 cttctacttt cttgtataca aggacataaa tacaaagatt ttaatatttt agaaattaat
     1621 aaaattttaa ctaaaaaatg tcatggtttg cgccctgttg ctttacttat agaatgctct
     1681 aagatgcttt gtgaaatttt aaaacttcaa actactttag gtgtacatga aaaaaatcaa
     1741 atccgttctc aaaaaggaaa agaaaaaggc tattttgtag attatcaaaa aatttggcta
     1801 gaaaatggtg gagaattaat aaaaatcaat aaacacaaat actataaact ccaccactct
     1861 caaaaaaacc tagaagaaat cccttcgcaa aaacgctcca tgtataaaaa acgttttgct
     1921 atgcttgaag aaatcaaaac aaatttagat aaaaccttaa gtattcaaga ctaattaagt
     1981 atattttgat ataatctagt cttgctttat gcaaaatcct tgctcataaa aatgggcttt
     2041 aatatccata aggagaaaag atgaaacatt atgaggtttt atttatctta aaaccaacac
     2101 ttactgaaga ggaagtgaat gcgaagttgg aattcgttaa agaagtccta accaaaaata
     2161 gtgcagaaat tgaaactgtt gttccaatgg gtactagaaa attagcgtat aaaatcaaaa
     2221 aatacgaaag aggaacttat tttgtgattt atttcaaagc tcctacaaac ttgatcgctg
     2281 agcttgaaag ggtgttaaga atcactgaag aagtaataag atttttaatc gtaaaatatg
     2341 aaaataaaaa agaaattgca gcttgggaaa aactaagcca cgggattaag caatctaaaa
     2401 aagaaattaa acctttagat gctcctgaaa tttaataagg aaaaagatgt ttaacaaagt
     2461 tgttttggtt ggaaatctta cacgtgatat agaaatgcgt tatgcacaaa gcggtagtgc
     2521 tattggagct tccgctatag cagtaacaag aagatttacc gcaaatggag aaaaaagaga
     2581 agaaacttgc tttattgata taagctttta tggtcgcacc gcagaagttg caaaccaata
     2641 ccttgcaaaa ggttcaaaag tactcataga aggacgtttg agatttgaac aatggagtga
     2701 tcaaaatgga caaaatcgct ctaaacatag cattcaagtt gaaaatatgg aaatgcttgg
     2761 caattccaat gttccacaac aaggcggttt tggcaataat agcttttcaa acaacaatta
     2821 tagtggaaac tatgaaaatc aaagctatga tccttatatg agtgaaaatc aaaattttaa
     2881 taaagcaaaa gcaaaccctg ctccacaaag aaaccaaaac ccacaacacg aagaaaaatt
     2941 aaaagaaatt gatatcgatg cttatgatag cgatgatact aatttaccat tttaaaggat
     3001 aaactatggc agaaaaaaga aaatactctc gcaaatattg caaatacact gaagcaaaag
     3061 ttgaatttat tgattataaa gatacagcaa tgttaaaaca tgctttatct gaaagattta
     3121 aaatcatgcc acgccgttta acaggcacaa gcaaaaaata ccaagaaatg gtagaagttg
     3181 caatcaaacg tgcaagacat gtagctctta tcccttatat agtggataga aaagaagtaa
     3241 tcaataatcc ttttgaagga ctataatctt ttaaagcaaa cttgtaaaaa gtttgctttc
     3301 ttatacattt attctcaaaa taaagttaaa ccaaagtata ttctaaaaca tcactgaaag
     3361 tatcaacagc aatgatttcc atattgtctc taacctcact aggaatatct tttaaatctc
     3421 tttcgtaatt ttttcttgga attaaagctg tttttatatc tgctttataa gctgcaatta
     3481 atttttcttt taatccgcct attggtaaaa cttttccttt taaatctatt tcacccgtca
     3541 ttgcaacatc tgctttaacc tttttatcac taaaaataga agcaatagct gtgcttatcg
     3601 taatacctgc acttgggcca tcttttggag tagctccatc tggcacatgt atatgaatat
     3661 tataactatc ataaacatta actttaggat caataattat ttttttaggt atttttattt
     3721 ttccttcatc gattaaaact tttatcatgc taaaagcaat tctagctgat tctttcatta
     3781 catcacccaa acttcctgtg agcgttaatt ctcctttacc tttaattttt acagcctcta
     3841 cttttaaaac atctccacct acgcttgtcc aagccaaacc attgacctga cctacttgat
     3901 tttctccatt atttttttct atttcaaaaa cttttttatc taaaaattca ttcaaatttt
     3961 ttgtattaat aatgactttt ttaatatttt ctaaaagtag ttttttagca ctcttacgac
     4021 acaactctgc cactttgcga cgcaaatttc taactcctga ttcacgagta taatcgctaa
     4081 tgattagctc tatagtttca tcatcaataa ataattcatt ggattttaag ccatgttttt
     4141 taagctcatc tggaattaaa tattttttca ttatatgaaa tttttcactt ggagtataag
     4201 agctaagttc tataaattcc attctatctc ttaaaggtgc aggaatattg ctaatatcat
     4261 ttgccgttgc tataaaaatg actttactta aatcaatatt aaaatttaaa taataatccc
     4321 taaatttaga attttgctct ggatctaaaa tttctaaaag caccgcactt ggatcgcctc
     4381 taaaactgcg atttaattta tcaatttcat ccaatacaat tacaggatta atttgttttg
     4441 cctctatgag tccttgagta atacgtccag gcatagcgcc tatgtaagtt ctacgatgac
     4501 cacgcagctc attaacatct tcaagtccac ctaaggctat acgaataagc tctcttttta
     4561 aagcttttga aacagaattt gccagtgaag ttttacccac gccaggaggc ccataaagac
     4621 aaagtataac tttagcacca tctttttctg ctatttttct tttttctaaa agctccctaa
     4681 ctgcaaaata ttcttctatg cgttcttttg gtttatttaa tgcataatga tcatggttga
     4741 gctgttttga aacttcctta atatcaagtt ttttcttaga aattttttca aaaggaacat
     4801 ctaatgctgt ttctatgtaa gtttgaatca tcgatgcttc ggaattatct tgatgaatgc
     4861 gttcgaattt ttcaatttgt tttttgattt ctttataagc gtcttcgtgc ataaatttct
     4921 tctttaactc cagacgcttt tgatactctc taacctcatc ttctttttgc gtatcagaac
     4981 caagctcttt ttgaatttgt cttaattgtt cttttaaaaa atattcttta tttaccttat
     5041 caatacgaga atgtacttta tttttaattt ctttttgaat tttattagct tctatttctt
     5101 gagcaattaa atctattaat tttactaatt tttgttcaag atctgttaaa acaaaaaact
     5161 cataagcaac ttgtttttta atacgcacag tatttaaaat caaatcgcaa atcctagatg
     5221 catcaaaacc ttcttcaatt gttcttaaaa gatctggaga aaaataatga ctaatatttg
     5281 ccaaattttt tactttctct tttaaaactt caagaagtgc ttctttttta gttccttcta
     5341 aaaagtcttc ttttataagt tctatcttgg cttctaaagg tttattagaa atttgctcta
     5401 taatttttcc cttggcatat ccttgaaaaa gtattttcac tcttccatca ggcaaaggaa
     5461 cttttcgcat gatagtccca atcactccgc aattataaat ttcatcaaaa tttcttccat
     5521 tttccaactt tgaaggtgca acaaaaagca tgctatcatt tttaatcgca agatctaaag
     5581 ctttcatatt ggatgaatcg ttaataaaaa taggagttat cataaaagga tataaaaata
     5641 attcatcttc aaccaatact ggtaaatttg ctggataatt ttgtatctct tcaatctgca
     5701 tttattttcc ttgtttatta aaatctttca aatatacttc tataccaagg aagctcaggt
     5761 ttgataatac tttgctgata aaattcactt tcttgaagtc tttgtttata aatttgtgca
     5821 ctttcatcat gccctatgcg ctggtataga ttttctatag tactattaag ataaaaaacc
     5881 gctaaattaa attttgtaag cattgtttga accaaaggtt catattctgt ataaggataa
     5941 tctttcaaaa aagtatctat ttctttttgg ctttcaagca ttaaagcctg attacgattt
     6001 ggcactgcaa atgcatcaaa ttttgcctta attttaagat aacgaatata atcagcattg
     6061 cgtgaatttc caaatttttt attatattca tctaaataaa attcagctaa cttatattcc
     6121 tcttcatcca tatgagcttg tgctaaaata attaaagtag tttctaataa aggatcggca
     6181 acatgctcac ttgccatacc attataatga tcatcagctt tttccaaatc cttgtcctgc
     6241 aaatctttaa taatttgctt ataccactca ctagcactaa gattgtataa accttcatca
     6301 tttttcgtac tacacgcact a
//
LOCUS       DAPOLW010000099         6166 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.099, whole genome shotgun sequence.
ACCESSION   DAPOLW010000099 DAPOLW010000000
VERSION     DAPOLW010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6166
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.099"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(12..1817)
                     /gene="mrdA"
                     /locus_tag="ROE18_001352"
     CDS             complement(12..1817)
                     /gene="mrdA"
                     /locus_tag="ROE18_001352"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDX3651525.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKTE
                     FLPPVRGQITDRNGTLLAINDLGFSISIKPYLSIKKSNKGILDKELSELTNLFPDLNA
                     SKLAEIYKRNDSYYNQDFIKVVDFIPYDEIISHYSELNLNKTIKIDPVVKRKYPFGKL
                     ASHIIGYVGKANLQDVQENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYKVNALNQE
                     VEQLSYTPAMSNDIELTIDIELQSYLTSLFEGNAGAAIIMNVNDGSILAAGSFPEYDL
                     NPFVTGISFKDWDELSNSLDHPFTNKLINGYYPPGSVVKMGVGLSFLNSKNISPSTHY
                     VCNGSIELGGRFFRCWNRSGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQISETLSRIG
                     FGVKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAIGQGNFLATPMQIARYTA
                     QIAKGGEVIPHFLKSIENNNTTIENQMDENKKEIFTLFEKSQLPYIRDAMYAVANEQG
                     GTSYRYLHNLDVKVAAKTGTAQVVGFSQTDKNRVDEKQFEYYTRSHAWLTSYAPYSKP
                     KYVVTVLLEHGGRNITSGATVAKIYQKMIELGYFK"
     gene            complement(1818..2312)
                     /locus_tag="ROE18_001353"
     CDS             complement(1818..2312)
                     /locus_tag="ROE18_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651526.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFVYTPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWSAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILSYIGDEKIKILGWAYIVSVFIECCLAYVFF
                     KGKI"
     gene            complement(2309..2905)
                     /locus_tag="ROE18_001354"
     CDS             complement(2309..2905)
                     /locus_tag="ROE18_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HDX3651527.1"
                     /translation="MIISAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVICRRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRTSIKLFIHLIDSRHTHLEIDVNLNDYLKRFLRPDQKILKVFTKCDKLNQSE
                     KAKLKNEFKDSILVSNLNKFGLDSLEDIIINQTLGLDK"
     gene            complement(2902..3363)
                     /locus_tag="ROE18_001355"
     CDS             complement(2902..3363)
                     /locus_tag="ROE18_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HDX3651528.1"
                     /translation="MVARQIILLLVCVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNARFKIVLKGKTYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(3345..3860)
                     /locus_tag="ROE18_001356"
     CDS             complement(3345..3860)
                     /locus_tag="ROE18_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651529.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNTSIIKAYYKANSWVRYADRDEFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGSNNVKIISQEVEYQPKDKILHTNTNFKALINGSIINGNTLNYDVKNKILN
                     IQGVNAWLQDK"
     gene            complement(3851..4339)
                     /locus_tag="ROE18_001357"
     CDS             complement(3851..4339)
                     /locus_tag="ROE18_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HDX3651530.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFNVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIKILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIVLSKKGGKAAVAQMIEILVEKNHLEEEWNKL
                     WL"
     gene            complement(4345..5172)
                     /locus_tag="ROE18_001358"
     CDS             complement(4345..5172)
                     /locus_tag="ROE18_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HDX3651531.1"
                     /translation="MQIKTITLELSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGTKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYEGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAASGAFAGAFVVRE"
     gene            complement(5132..>6166)
                     /locus_tag="ROE18_001359"
     CDS             complement(5132..>6166)
                     /locus_tag="ROE18_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HDX3651532.1"
                     /translation="MNVLRNLDINPSFISDLIFVQTQQDIKSKHAQTLIDSMQNFSKV
                     TPMIRKILAQQEVPDEILYLAMVESGLKTHSVSNAKAVGVWQFMQPTARNLGLRIDAY
                     VDERRDPIKSTYAATNYLKELKEEFGKWYLALLAYNCGNGKLRQAIKQAGSDDLSVLL
                     NPDKKYLSLETRNFIRKILTLAFLANDRDFLLDKDASLMNYALSNEFAKVDVPSSASL
                     KEIAKNLNMDLATFKKYNPQFKHNFTPPGKGYYMYIPLNKVAFFDKNFKAEKLAKVDT
                     TIPMTRTYTVKSGDSLYKIAKNYNISVDEIREFNKIAKNHLSINQKLIIPIKENKNAN
                     KNNYTRVVSR"
BASE COUNT         2139 a         1118 c          714 g         2195 t
ORIGIN      
        1 acaactaaaa attatttaaa atatccaagt tcaatcattt tttgataaat tttagctaca
       61 gttgcccctg aagtaatatt tctcccacca tgttccaaaa gaacggtaac tacatatttt
      121 ggcttagaat aaggagcata agaagtaagc cacgcatgag atctagtata atactcaaat
      181 tgtttttcat caaccctatt tttatctgtt tgtgaaaatc ccacaacctg agcagttcct
      241 gtttttgctg caactttcac atcaagatta tgcaaataac gataagaggt tcctccttgc
      301 tcattagcaa cagcatacat tgcatctctt atataaggca attgactctt ttcaaataaa
      361 gtaaaaattt cttttttatt ttcatccatt tgattttcta tagttgtatt attattttct
      421 atgcttttta aaaaatgagg tataacctct ccaccttttg cgatttgagc cgtatatcta
      481 gcaatttgca taggtgttgc aagaaaatta ccttgaccta tagctgtatt taaagtatca
      541 ccttgaaacc aagattgtct atatctttgc atcttccatt ctttgcttgg taaagttcct
      601 acaaattcac taggtaaatc tacccctgtt ttcactccaa agccaatgcg agataaagtt
      661 tcacttattt gatcgattcc aacttgcaaa ctgccattat aaaaataaac atcacaacta
      721 tattttatcg catgttttaa atccacaggt ccatggcctg atcgattcca acatctaaaa
      781 aacctgcctc caagctcaat gcttccattg caaacataat gagtcgacgg gctaatattt
      841 ttagaattta aaaaagaaag ccctactccc atttttacaa cagaacctgg aggataatat
      901 ccatttataa gtttatttgt aaaaggatga tcaagactat ttgaaagctc atcccaatcc
      961 ttaaaagaaa tccctgttac aaaaggatta agatcatatt cagggaaact ccctgcagct
     1021 aaaatagatc catcatttac attcataatt atagcagctc cagcattccc ttcaaacaat
     1081 gaagttaaat aagactgaag ctctatatct atcgtaagtt ctatatcatt agacatagca
     1141 ggagtgtaag aaagctgttc tacttcttga tttaaggcat taaccttata aaccctagtt
     1201 cctttttctc cttgtaaaat atcattataa tagcgttcta taccgctttt tcccgtatag
     1261 ttagaaagtt ttgctatttc attttcttga acatcttgca aatttgcctt acctacatac
     1321 ccaataatat gcgaagccaa ttttccaaaa ggatattttc tttttacaac aggatctatt
     1381 tttattgttt tattaagatt taactctgaa taatgcgaaa taatctcatc atagggtata
     1441 aaatctacta ctttaataaa atcttgatta tagtaagaat catttctctt ataaatttct
     1501 gctaatttac tagcatttaa atcgggaaat aaatttgtaa gttcagataa ttctttatcc
     1561 aaaattcctt tatttgactt tttaatactt aaataaggtt taatagaaat actaaaaccc
     1621 aaatcattaa tagccaataa agttccattt ctatctgtaa tttgacctct aacaggtggt
     1681 aaaaattcag tttttatggc attttgttta gcaagctctt cataatatac atttgatttt
     1741 atactcaaat aatacacacg acttaataaa aatataaaaa acaatagtat aaatccaaca
     1801 actaaacgca ttctcattta aattttacct ttaaaaaaca cataagctaa acaacattct
     1861 ataaaaactg aaacaatata cgcccatcct aaaattttaa ttttttcatc tccaatataa
     1921 gacaatatca tatccaaaaa caaaataatg ccgtaagcac aaagcacaaa aacaacaggg
     1981 ataaatttac caatttttaa atttgtctta atccaatctg cacaaagata ataaaaaata
     2041 aaaaatgccg accaagatga aaaaataaaa aaattataag ttatatcagt aaaaaataaa
     2101 aaaaataaag aaaaatacca tctaaaatca agctttgaaa aagttctttc tctctcttct
     2161 agtaagcaaa acatataaca gaaaaaaatc ccataaagta acggggtata tacaaaagtc
     2221 gaaccaagaa tctgataaat tagaaaaaaa aatcctaaaa agacataagc tccattaaat
     2281 tttgctttat aagcacttaa atttcttctc atttatcaag acctaaagtt tgattgataa
     2341 taatatcttc taaagaatca aggccaaatt tattcaaatt tgaaactaaa atagagtctt
     2401 taaattcatt ttttaactta gctttttcac tttgatttaa tttatcgcat ttggtaaaaa
     2461 cttttaaaat tttttgatca ggtcgtaaaa atcttttcaa atagtcattt aaatttacat
     2521 cgatctctaa atgagtatgt cttgagtcga ttaaatgtat aaataacttt atcgaggttc
     2581 ttaattttaa aaattcatct aagttttgat tccatatttc ttttaaattt ttagaaacct
     2641 ttgcataacc aaaccctggc aaatcgataa aattgatatt aaatttttct tcatttcttc
     2701 tgcaaattac ttcgaaaaaa tttataagct gagtttttcc aggagttgcc gaacttttgg
     2761 ctaaattttt ttgtttacac aaagaattga ttaaagaact ttttccgaca ttagaacgcc
     2821 ccaaaaatgc tacttcacta aaatttgagc tcaaattctc atcaaatttc actaaagaag
     2881 tgataaattt agcactaatt atcatttgtc tttaagatca aacacaaaac gagcaggttt
     2941 ttgatcctta ctctccactc gataaatatt agcttttcta tcgactatta ttttatcacc
     3001 aaaaagtttt tgattgcttc caagctcatt tatataagca tgaccattaa tctcgtaagt
     3061 atctttaata acattataaa taaatttatc tccactacct ttataagttt taccttttaa
     3121 aacaatctta aacctagcat tttgcattgc ttcataacga ataggtttgc gatttttatc
     3181 cgtataaata atcaattttt cagaatttaa aatatcatca cctctaatta cttctacatt
     3241 tccactaaga atactttcac ccttattttc atctgagtaa aaatttaaag cttttacttc
     3301 aatttgagtt gcccaagtta cacttacaca aactaacaat aaaattattt gtcttgcaac
     3361 cacgcgttta ctccttggat atttaaaatt ttgtttttta catcatagtt taaagtattt
     3421 ccgttaataa tacttccatt gatcagagct ttaaaattag tatttgtgtg taaaatttta
     3481 tccttaggtt ggtattctac ctcttgagaa ataattttga cattattaga acctatataa
     3541 gtaacatttc cttcaaacaa aaccttgctc atatctttat tgaaaaactc taaacgattc
     3601 gcgctaagat taaaatctaa atttaaagta ataaaatcat taaattcatc tctatctgca
     3661 tatctcaccc aagaatttgc cttataatat gccttaatta tactagtatt actctcataa
     3721 gctttcaaat ttttagcctc aatattttta aaatttaaag cattagtttg caaattcaaa
     3781 gaatacggat cttgcaaact taaaatcgta aaagtaattg taaaaagagc aattaaaatt
     3841 ccaaaaattt ttatagccaa agcttattcc attcttcttc tagatgattt ttttctacta
     3901 aaatttctat catctgtgct acagcagcct taccaccttt tttgctaagc actatgtcta
     3961 catttaaatc tttatgacca tcttttggct taaaactaag tcctacactt tcaagcaaag
     4021 ccttatcgtt aaaataatct ccaatagccg cacactgaga aaaatctaaa ttaagttttt
     4081 gtaaaatttc ttttgcacaa gctaacttat ccttgatacc ttgatataaa atttttattt
     4141 ttaaatcttt agctcttttt tcaacacaag gacaatttct acctgtaata atagcaattt
     4201 ttttaccaag ctttagccaa gcctcgatag ccgctccatc ttttacatta aattctttaa
     4261 taaattctcc attagaagta taaataatct tcccatcagt taaacagcca tctacatcca
     4321 aaaaaatcaa ttctgtcata atttctactc tcttacaaca aatgcacctg caaatgcacc
     4381 acttgcagca aaatcccttg cttcatcttc acttctaaag cctgttaaga aaacgcgatt
     4441 taacccatcc actgagcttg tgcgtatagt agagctataa gttctataag ttttatatct
     4501 tgctgctatc gtttgtgctc cagctgggtt tttaaaggct ccaatttgaa ccatgaaatt
     4561 tccaccttca taaatttgtc cattatttgc aatctctcca ctatttccat agtttacatt
     4621 agaatgtaca atattattac ccgaattact tgatccaaac cctataacct caagccttac
     4681 tggagctgtt cctgaagcaa tcatatcaat ttgactagca gctccttttg ataaatctat
     4741 aatacgatta tttacaaaag gacctctatc attcacacga acggtaactt gacgattgtt
     4801 atttagattg gttactttta agatggtatt cataggtaaa gttttatgag ccgcggttaa
     4861 agcattttga ttataggttt cgccattaga ggttttcttg ccgtgaaagc ctggcccata
     4921 ccaactcgca ataccatcag cagtttcgcc tactgctaca acagtaggat aataagtttt
     4981 accgttgata gtataaggct tcattgttcc tttagtccct gaagaactag gactgctttt
     5041 aaaatcattt gaaggataat acacttgagc attatccaag ctagaaaaaa aactagtgcc
     5101 taaacaacca ctaaaaaata aagcccctag actaacggct gacaactcta gtgtaattgt
     5161 ttttatttgc atttttattc tccttgattg gtataattaa tttttgatta atgctaagat
     5221 gattttttgc tattttattg aattctcgaa tttcatcaac acttatatta taattttttg
     5281 ctattttata taaagagtca ccagacttaa cggtataagt tcttgtcata ggtatagttg
     5341 tatcaacctt cgcaagtttt tctgctttaa aatttttatc aaaaaatgct actttattaa
     5401 gtggtatata catataatac cctttaccag gaggcgtaaa attatgttta aattgtggat
     5461 tatatttctt aaaagttgca agatccatat ttaaattttt agctatttct tttaaagatg
     5521 cagaagaagg cacatcaact tttgcaaatt cattgcttaa agcataattc attaaagacg
     5581 catctttatc tagtaaaaaa tccctatcat tagctaaaaa agcaagcgtt aaaatctttc
     5641 ttataaaatt tctagtttct aaagaaagat atttcttatc agggttcaat aaaacactta
     5701 aatcatcact tcctgcttgc ttgatagctt gtcttagctt gccatttccg caattataag
     5761 ctaaaagtgc caaataccat ttgccaaatt cttcttttaa ctcttttaaa taatttgtag
     5821 cggcataagt tgacttgatt ggatcacgcc tttcatcaac ataagcatcg attcttaaac
     5881 ccaaatttct agctgttggt tgcataaatt gccaaacccc tacagccttg gcattagaaa
     5941 cgctatgagt tttcaagcct gattcaacca tagctagata caaaatctca tcaggaactt
     6001 cctgctgggc taaaattttt cttatcatag gagtaacttt tgaaaaattt tgcatactat
     6061 ctattaaagt ttgagcatgt tttgatttta tatcttgttg agtttgcaca aaaatcaaat
     6121 cactgataaa acttggatta atatctaaat ttcttaaaac attcat
//
LOCUS       DAPOLW010000100         6071 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.100, whole genome shotgun sequence.
ACCESSION   DAPOLW010000100 DAPOLW010000000
VERSION     DAPOLW010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6071)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6071)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6071
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.100"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            18..725
                     /locus_tag="ROE18_001360"
     CDS             18..725
                     /locus_tag="ROE18_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004274836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651533.1"
                     /translation="MVLSLNAQNLEIDKIRTDLYSKSGANVLKKVEISLEFDGNNLKE
                     NENKLIDAVNTVISGFFYEDIFTEIGKNNFKKTLEKFLDKKYKIKLDDIYIISLSGVE
                     KFDLEEFKRFLESTEAKEKGMGSEVKKALENLEVPKTQVPSVEKIPTPSVPNLEVKQV
                     EQLFKDPDEENKNDNGEINIDNLNTPKMTPDIEEKIKRDLIANPPQIFKENNASKPYH
                     LPQTGYDIKLDENSTQN"
     gene            complement(722..1231)
                     /gene="lolA"
                     /locus_tag="ROE18_001361"
     CDS             complement(722..1231)
                     /gene="lolA"
                     /locus_tag="ROE18_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HDX3651534.1"
                     /translation="MKKTFLIFFIFIGQLFALDLNFNTFSSNFTQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLVAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDVFKAK
                     IPQNYDIVR"
     gene            1331..3919
                     /gene="secA"
                     /locus_tag="ROE18_001362"
     CDS             1331..3919
                     /gene="secA"
                     /locus_tag="ROE18_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HDX3651535.1"
                     /translation="MFLNALKAVFGTKNDREVKKYFKRVAQINALEGNYQNLSDDELK
                     AEFAKFKEQILSGEKNENDVLNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVVLS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKAEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANAKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKSIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDIRAKISQNIAEYSANVMNDYMLDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMLRLEIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEAQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            3916..5121
                     /locus_tag="ROE18_001363"
     CDS             3916..5121
                     /locus_tag="ROE18_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDX3651536.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYLSTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALKDENLSGFDILVGSALTDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGIPKNPN
                     YDGIHVYSDNAFKDVEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPVDVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            5144..5929
                     /locus_tag="ROE18_001364"
     CDS             5144..5929
                     /locus_tag="ROE18_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDX3651537.1"
                     /translation="MSLFTQKNKNFKPLKPLSKSKIITNLILLILFLILFCYCSFSIS
                     AYHFDFSAIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF
                     YIELVRGTPLLVQVLLIYYIIANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS
                     ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQ
                     SAQEINSYTFATLEAYVILAITYLVLTLPISIFSRYLERKCQK"
     gene            5991..6066
                     /locus_tag="ROE18_001365"
     tRNA            5991..6066
                     /locus_tag="ROE18_001365"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6024..6026,aa:Lys,seq:ttt)
BASE COUNT         2127 a          721 c         1125 g         2098 t
ORIGIN      
        1 tatttttaag tgtttttttg gttttgagtt taaatgctca aaatcttgaa atagataaaa
       61 taagaacaga tttgtattct aaaagtggag caaatgttct taaaaaagtt gaaatttctt
      121 tggaatttga tgggaataat ttaaaagaaa atgaaaataa gttaattgat gctgtaaata
      181 cagtaatttc agggtttttt tatgaagata tttttacaga aattggaaaa aataatttta
      241 aaaaaacttt agaaaaattt ttagataaga aatataagat taaactagat gatatatata
      301 tcatatcttt aagtggagtg gaaaaatttg atttagagga gtttaaacgc tttttagaaa
      361 gtactgaggc taaagagaag ggtatgggta gcgaggtaaa aaaagcactt gaaaacttag
      421 aagttcctaa aactcaagtt cctagtgttg aaaagatccc aactcctagt gttccaaatt
      481 tagaagtcaa gcaagttgaa cagcttttca aagatccaga tgaagaaaat aaaaatgaca
      541 atggagaaat caatatagat aatttaaata cacctaaaat gactccagat atagaagaaa
      601 aaattaaaag agatttaatc gccaatcctc cacaaatatt caaagaaaat aacgcaagca
      661 agccttatca tttgccacaa acaggctatg atataaagct tgatgagaat tcaacgcaaa
      721 attagcgaac tatatcataa ttttgcggaa tttttgcctt aaaaacatcg gaattaattt
      781 ttggattttt aatttgattg tttagattga ttataacatc attttcaaat tcatctttat
      841 aggatatgct ttgaatttgc tcttgattga gtttaattgt ataatttata ttatcatatt
      901 ttgctacaag tttatctttg tctataagac ttgctttttt gaaaatttca ttaagatttg
      961 gaatgttatc aagatgagag aaaatgactt gttctagatc gtgctctact atggttactt
     1021 gatttttgtt gatataaatc tcttttttac taggagtatc ataactccaa tatgcttgat
     1081 ctttactcag tataaaatgc ccagaataag aaagtgtaga gtttttggat ttcactattt
     1141 gggtaaaatt gcttgaaaag gtattaaaat taagatcaag ggcaaaaagt tgtcctataa
     1201 aaataaaaaa tatcaagaat gtttttttca tttattttcc ttaaaaaaat atatttttta
     1261 tgtcattcta gctaatttta attaaataat cgttataatg atagcttgaa aaatttataa
     1321 aggtttagaa atgtttttaa atgctttaaa agccgtgttt ggcacaaaaa atgatcgtga
     1381 agttaagaaa tatttcaagc gtgtagcaca aatcaatgct ttagaaggca actatcaaaa
     1441 tttaagcgat gatgaattaa aagctgaatt tgcaaaattt aaagagcaaa ttttaagcgg
     1501 agaaaaaaac gaaaatgatg ttttaaatga tgtttttgct atagtcagag agacaggtaa
     1561 gagaacttta aatatgcgtc attttgatgt gcagttaatc ggtggtatgg ttttgcacga
     1621 tggaaaaatc gcagaaatga aaacaggaga aggtaaaact cttgtagcga ccttacctgt
     1681 tgttttaaat gccatgagtg gcaaaggcgt acatgtcgtt acagtaaatg attatctagc
     1741 caaaagagat gctgagcaaa tgagtgcgat ttataatttt ttaggtttta gtgttggcgt
     1801 ggtgctttct tctcaaaata gtgatataga acacaagcaa gcttatgatt gtgatattac
     1861 ttatggaacc aataatgagt ttggttttga ttatttgcgt gataatatga aattttcaaa
     1921 agctgaaaaa gttcaaagag agcataattt tgttatcgta gatgaagtag atagtatttt
     1981 aattgatgag gcaagaactc cgcttatcat cagtggtcct acaaatcgta ctttagatgg
     2041 ttatattaaa gccaatgaag tagctaaaca aatgcaaaaa ggtgaagcag ttttaccccc
     2101 tgcaaaacct gagggtgatt ttgtagtaga tgagaaaaat cgtaatattt taattacaga
     2161 agcaggtatt gctaaggctg aaaaactttt tggcgtagaa aatttataca gtcttgataa
     2221 tgctatctta gctcatcagc ttgatcaagc cttaaaagca cataatcttt ttgaaaaaga
     2281 tgtgcattat gttttaagaa ataatgaagt tatcattgtt gatgaattta cagggcgttt
     2341 aagcgaagga cgtcgtttta gcgaaggatt gcatcaagct ttagaagcta aagaaaatgt
     2401 aaaaattcaa gaagaaagcc aaactctagc agatattact tttcaaaatt attttagaat
     2461 gtacaataaa cttgcaggta tgacaggaac tgcacaaaca gaagcgactg aattttctca
     2521 aatttatagt ttagatgtta tttctatacc gacaaatatt cctattaaaa gacaagataa
     2581 agatgatctt atctataaaa ctcaaaatga aaaattcaaa gctgtaattg aagagattaa
     2641 aaaagccaat gctaaaggtc agcctgtact tgtaggaacc gcaagtatag agcgcagtga
     2701 agtttttcac aatatgcttg taaaagagaa aatccctcat catgttttaa atgctaaaaa
     2761 tcacgagcaa gaagctttga ttatccaaga tgcaggtaaa aaaggtgctg taactatcgc
     2821 tacaaatatg gcaggtcgtg gtgtggatat aaaaatcgat gatgagatta gggctttggg
     2881 tgggctttat atcatcggta cagaaagaca tgaaagccgc cgtattgata atcaacttcg
     2941 tggtcgtgca ggaaggcagg gtgatcctgg aataagtcgt ttttatctaa gtttagaaga
     3001 taatctttta agaatttttg gtggggatcg tattaaaagt attatggatc gcttgggcat
     3061 agaagagggc gaaagcatag aatcaagaat cgttacaaga gcggttgaaa atgcgcaaaa
     3121 aaaagttgaa agcttgcatt ttgaaagcag aaagcatttg ttagaatacg atgatgtagc
     3181 aaatgaacaa agaaaaacta tttatcgtta tcgtaatgag cttttagatg aaaactatga
     3241 tattagagct aaaatttctc aaaatatcgc tgaatatagc gcaaatgtaa tgaatgatta
     3301 tatgcttgac gaaagcggtt ctaatgtaaa ttttgaaaat ttgaaagcaa aaattttgta
     3361 tgaatgttca actcagatta gtgaaaaaga ttttgagaat ttaagcgtca ttgaaatgca
     3421 agacaagcta agtcaaattc ttgaaaattc ttataatgaa aagatgttaa gacttgagat
     3481 taaagaattg cgtaatatag agcgtatttt atatttgcaa gttttggata atgcttggag
     3541 agagcatttg tatcaaatgg atattttaaa aacaggaata ggacttcgtg gatacaatca
     3601 aaaagatcct cttgtggaat ataagaaaga aagttataat cttttcttgg agttggtcaa
     3661 tcgtattaaa tttgatagta ttaaactact ttttagcgtg caatttaatc aagaagaggc
     3721 gcaaaattta gaaaataaag ccaatgaaga aaatgaaaag ctacttcaaa gctcagtaga
     3781 aatgggcgca agcgaagata atcttggcga agctgaattt aaaaaagttc cacgcaatgc
     3841 tccttgtcct tgcggaagtg gaaaaaaatt taaagaatgc catggaaaaa gtggtcctaa
     3901 gcaaggaatt ttagcttgaa taaaagcgtt ttaaaatatt tactttttaa gtatttaaga
     3961 tttgataaag agcaaccctt tatcaatctt tctatgcttt tggccttttt aggagtttgt
     4021 gtaggacttt gcgttttgct tgtagctatg gcaattatga atggttttga taaagaattt
     4081 gaaaaacgct tttttgtgat gaattatcct attactattt tgcctaaatt ctacgctcct
     4141 gtaaatgatg aatttataga tgagttaaga aaaacatttc caaatttgtt atttagccct
     4201 tatttaagca ctcaagttgt tgtaaaggga gataatcgtt ttgaaggtgg tgtgcttttt
     4261 ggcgttaatt ttaatgatga aaaaaaaata aacgaagtgg ttgctaaagc tttaaaggat
     4321 gagaatttaa gtggttttga tatacttgta ggatcagcac ttactgatga atttggtttg
     4381 cataaaaatg acaaactttc acttattttt tcaaatctta atcctagtgg attttcttta
     4441 gtaccgcaaa ctaaacgttt tgatgttaaa gcgcgtttta cttcagggct tgcattttat
     4501 gataaagctt atatgtacac agatgttgat gcattgaaaa aagtacttgg aatacctaaa
     4561 aatccaaatt atgatggaat tcatgtatat agcgataatg cttttaagga tgttgaaaaa
     4621 attaaatctt atttaaaaga tgattatgct gtggtgggtt ggtgggagca aaataaaaat
     4681 tttttttcag ccttagaact tgaaaaaaga gcgcttttta tagtgttgat gcttattatt
     4741 ttggttgcaa gtttaaatat agtaagttct ttattgatga tagtaatgaa tcgtcgcagt
     4801 gaaatagcac ttttacttgc tctaggtgca agcaaaaatg aggtaaaaaa gagttttttt
     4861 gccttaggta tgcttattgg tggtggtggt atgatagtgg gtgtggtact tgcatttttt
     4921 gctttatggc ttttgggaaa ttttgatatt gtaactttac ctgttgatgt ttatggaacc
     4981 agtaaattac cacttgattt gtctttaatg gatttttctt taaccattgt gggtgcttta
     5041 ataatcatag ctttatcatc tttttatcct gcaaaaaaag caactcaaat taatatttta
     5101 gatactttaa gaaatgaata aattgtaatt ttggagattt ttattgtctt tgtttactca
     5161 aaaaaataag aattttaaac ctttaaaacc tctatcaaag tcaaaaataa tcactaattt
     5221 aattcttttg attttatttt taatattgtt ttgttattgt agttttagta taagtgctta
     5281 tcattttgat tttagcgcaa ttgcaaccta taaagaaaaa tttcttcaag gttttttaaa
     5341 tactttaata atcagttttt tttctttatt gttgagtata attttgggtg gagttttttg
     5401 tgctttttct ttaagttcga ttgttttttt aagattttta tctacatttt acatagagct
     5461 tgtcagagga acccctttac tagtgcaggt attattgata tattatatca ttgcaaataa
     5521 tttaggactt gataatcgat atgtggctgg agttattatt ttatcatgtt tttctgctgc
     5581 ttacttagct gaaatattta gagctggaat tttaagtatt tctatatctc agcttgagag
     5641 cgctagggct ttagggttaa aagagatgca ggtttttgcg tatgtaattt ttccccaagc
     5701 tttaaaaaat attttagcac cgctgagtgg acaatttgca aatttaatta aagatagttc
     5761 cttattaagc gttattgctg taaatgaatt aacccaaagt gcgcaagaga taaattctta
     5821 tacttttgct actcttgaag cttatgtaat tttggctatt acatatcttg ttttgacttt
     5881 acctataagt atattttctc gttatttgga gagaaaatgc caaaaatgat ttaaaaaagc
     5941 ttgacaaata gagctaattt tggcataatc acatttttat ttcagaaaat gtctcgttag
     6001 ctcagccggt agagcatctc ccttttaagg agggggccgt tggttcgaat ccaacacggg
     6061 acaccattat a
//
LOCUS       DAPOLW010000101         6030 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.101, whole genome shotgun sequence.
ACCESSION   DAPOLW010000101 DAPOLW010000000
VERSION     DAPOLW010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6030
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.101"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..336)
                     /locus_tag="ROE18_001366"
     CDS             complement(<1..336)
                     /locus_tag="ROE18_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HDX3651538.1"
                     /translation="MQYLESRGIKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEEKTLQ"
     gene            complement(336..1382)
                     /locus_tag="ROE18_001367"
     CDS             complement(336..1382)
                     /locus_tag="ROE18_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HDX3651539.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYKRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISITEVLKRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDEEIIDHFE
                     HLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALVRLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            1456..2643
                     /locus_tag="ROE18_001368"
     CDS             1456..2643
                     /locus_tag="ROE18_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDX3651540.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLSMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCILILIGISFLVRLSIPDFHQKTQSRFFTMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INDKNLFYMYLGQGLGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     EYHGRVIAYTDMIYLSFSAIISMLMGFLFEIGLSLELITGLLGMIFIFAAFYWKWFYK
                     KYL"
     gene            complement(2659..3747)
                     /gene="nusA"
                     /locus_tag="ROE18_001369"
     CDS             complement(2659..3747)
                     /gene="nusA"
                     /locus_tag="ROE18_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HDX3651541.1"
                     /translation="MEKIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEF
                     FVDPKNLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENL
                     GRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRA
                     FLPRKNRIKGEKFKIGDVVKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDG
                     YVNIIGCARIPGERAKIILQANGTNIDPVGATVGVKGVRINAVSKELHNENIDCIEFT
                     NESEILISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIE
                     LNELSSSQLNNAISNEEAMKNLQDLFKI"
     gene            3875..4117
                     /locus_tag="ROE18_001370"
     CDS             3875..4117
                     /locus_tag="ROE18_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651542.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            4114..5415
                     /gene="miaB"
                     /locus_tag="ROE18_001371"
     CDS             4114..5415
                     /gene="miaB"
                     /locus_tag="ROE18_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HDX3651543.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     TKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETVDVLEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEEIASRRLSTLQNRHSEILDKIVKKQENKTFKVLFEELRAGNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            5399..6028
                     /locus_tag="ROE18_001372"
     CDS             5399..6028
                     /locus_tag="ROE18_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HDX3651544.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKAGVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWKFKSW
                     DKMILPKPFSKITYSLSEPLDILSLDKEKAKEFLMKQFDKISLADQFKE"
BASE COUNT         2022 a          973 c          881 g         2154 t
ORIGIN      
        1 ttgcaaagtt ttttcttcta ttcttggttt taaaagcaat ttttctaaac tctttaaagc
       61 aaaatcaaaa ttttctttca agcaagaaag attgatttcc aaactttcaa aaccactact
      121 tgcctctaaa tttatcgctc taaattctaa atccttaaaa aatttatcat ccacgccttc
      181 atttaaaata cgtgaaaaca tcttagctaa gcctgctatt tcatcataac ttctagcaca
      241 atttctaaaa acaagcttta aaacaacaat aggaaaatca gaattttttt caaaaataaa
      301 agggatttta atacccctac tctctaaata ctgcattaaa acctttctaa aatttcataa
      361 gcggtattgc gtttagctgg attttcgcct aaacttctaa tcagccttat catctcatct
      421 tgattcattc tataacttgc tcctgcagca cttactacat tttcttccat catagttgag
      481 cctaaatcat tggccccaaa ttttaaagca agctggccta taagtgagcc ttgagttacc
      541 caagaacttt gtaaattttt aaaattatct aaataaagtc ttactaaagc taaaagtctt
      601 aaatatttgt tagaactttg tttcataatc tctggatgtt tttggattaa agcagtatta
      661 tcactttgaa agctccataa aataaaagct ctaaatcccc ctgtttcatc ttgtaatttt
      721 ctcaaatgct caaaatgatc gatgatttct tcatcatttt caaccgttcc aaacatcata
      781 gtagctgtac ttttcatacc aattttatga gcttggcgat gtacttctaa ccaagtagct
      841 gtatcacatt tatttggtgc gataatatca cgcaccctat cgcttagcac ctcagcacct
      901 gctcctggta tagaaaataa acctttagct tgcaatcttt ttaacacttc agtgattgaa
      961 attttagatg cttttgcaat ataagcgatc tcaactgctg aaaaaccatg cacagtgata
     1021 tttggataat gttcttttat ccaagaaact aattcttcat accattctat ttttaatttt
     1081 ggatgcaccc cgccttgaaa aagaatttgt gttcccccga tagcttcaag ctcttctatc
     1141 tttttgccta tctcttcaaa gcttaaaata taagcatcat cttctttatg atggcgataa
     1201 aaagcgcaaa aagaacaatc aatacaacaa acattggtat aattaatatt tctatccaca
     1261 acaaaagtgg tgattttttc aggatgaagt tctaattttc ttttataagc catttctcca
     1321 agttctgtta aacttgcatg gtgtaataaa tctaaagctt cttttttatc cagtcttttc
     1381 aaaatttttc cttgtttttt acataattaa aataattata gcatttaaaa tataaattat
     1441 gctatagttt cgcttatgaa ttacattgaa ctattaaaaa ataataaaaa tatcagaata
     1501 ttagcttcgg ttcagtttat agtatatttt ggagcatggt tttctcaaac gggagttttt
     1561 acccttttag tcgaacttaa tgctcctact tgggcaacag ctacaagtgc tatgcttgct
     1621 tttttacctg gagttttact tgctcctatt aatggcgtca tagtagagaa aaataaacct
     1681 aaaaaacttt tactcagtat gattagcata gaattaattt ctattttttg tcttattttt
     1741 gtcacaagtc ttagtatgct ttggctttta tttattttaa ttttcataag actttgtgtt
     1801 gcttcgattt attttcaagc tgaaatgagt ttattggcca aaattttaac tcctcaagaa
     1861 cttaaactcg ctaatgaaat gcacagtgtc atttgggcga tttcttatac agcaggtatg
     1921 gcaagtgcgg gaatttttat ttattttcta ggagttaaaa ccgcttttct atttgactgt
     1981 atacttatac tcataggcat ttctttttta gtaagattaa gcattcctga ttttcatcaa
     2041 aaaacacaaa gtcgcttttt taccatgata aaagaaggat ttttctatgt tttaaacaat
     2101 aagataattt ttcatcttat cttgcttcac gcttttatag gtttaactgc ttatgaaacc
     2161 ttggttacgc ttttagcgca acatcaatat aaagaagttt tatctgctgc tttagtaata
     2221 gggtttttaa atgcagtacg tgcttgttct ttagctatag gacctatggt tttaagcaaa
     2281 tttattaatg ataaaaattt attttacatg tatcttggtc aaggcttggg tattatactt
     2341 tgggctttaa ctcaatttaa tttttatatt tcttttttag gtttaatcgg tgcaggtttt
     2401 tttacctcag cgctttgggc ttacacctac actatgatac aaaaaaatgc cgacaaagaa
     2461 tatcatggta gagtgatcgc ttatacagat atgatttatc ttagttttag cgctattatt
     2521 tcaatgctta tgggcttttt atttgaaata ggcttgagtt tagaactaat tacaggctta
     2581 ttgggtatga tttttatctt tgcggcattt tattggaagt ggttttataa aaaatatttg
     2641 tgaaaattca caaatatttt aaattttaaa caaatcttga agatttttca ttgcttcttc
     2701 attgctgatg gcattattta gctgcgatga gcttaattca ttgagctcta tttcataacc
     2761 acttaacata gaagcaaggc gaatattaat accatttttt cctatagctt tgcttttttg
     2821 ttcgctattt aaacttacaa tagctttttt atcttcaatt tttacagaat ttacaatagc
     2881 aggagccaag gcacgagaaa ttaaaatttc actctcattt gtaaattcta tacaatcaat
     2941 attttcatta tgaagctctt tgcttaccgc attaattctt acacctttaa cacctactgt
     3001 agctcctaca ggatcgatat ttgttccatt ggcctgaaga atgatttttg ctctttcacc
     3061 tggaattcta gcacatccta taatattgac ataaccatct ttgatttctg gaacctcagc
     3121 ttcaagtaaa cattctaaaa atttaggact tgtacgacta agctcgattt taataccctt
     3181 atctgtataa acacggcgta tcacagcttt taccacatca cctattttaa acttttcccc
     3241 tttaatgcga ttttttctcg gtaaaaaagc tcttaattca tctatttcaa taaaagtatt
     3301 ttcttcatta tccactctaa caactgtacc aaaaaccatt tgccctactt tgtttttata
     3361 cttttcaaaa atagtttgtt ctaataattt ttgtatatga tattcaagtt ctttatgcaa
     3421 ggtatttacc gcagttcttc ctaaattttc caaagaacat tcataggtta attcatctcc
     3481 tatttcaaca tctggagctt ctgattttgc cttacttaac gcgataaaac tctcactttt
     3541 attttgcaat ctctcgtcat tatctgctac tatggtaatt ttttgataaa gatttaaatt
     3601 tttaggatcc acaaaaaact catattcttg tccataaatt ctttttgcag tattgattaa
     3661 agcggtagct accttttctc ttacattctc taagtttaaa tttttttcat tagcaataga
     3721 ttcgataata tctgctatct tttccatatt ttataaaacc ttttttgtgg gaaatttaaa
     3781 taatgtagat aaaaattata tccttaataa gtttaattaa aagtaaaatt tgctaaaatt
     3841 atagattaaa atgaaaattc ttaaggattt agctatggaa ttaaaattgg caagaacttt
     3901 gattaatgaa aaacctaaaa atattagcct agaaaaaatc gaagaggcta tagaaaaaga
     3961 aggacaaaag tttttttatt ttgataaaga taatacacac aaacaactca ttgcccttgt
     4021 aaatcatttt gaaaaaaaag gagtaagcat ttatcataga accgtaaaat acggacttga
     4081 tgataatgat tttatgtatg aggtacatat tctttgagtg ctaaaaaact ttttatccaa
     4141 actttaggtt gtgcgatgaa tgtcagagat tctgagcata tgatcgcaga attaacacaa
     4201 aaagaaaatt acgcactaac agaagatatc aaagaagcag atcttattct tattaatacc
     4261 tgttcagtgc gtgaaaaacc tgtgcataaa cttttctcag aagtgggtgg ctttgaaaaa
     4321 gttaaaaaag aaggtgctaa aataggagtt tgtggatgca ctgcatcaca tttgggaaat
     4381 gaaattttca aacgtgctcc ttatgtggat tttgttctag gggcaagaaa tatttccaaa
     4441 atcactcaag ctataaaaac tccaaaattt atgggcgtgg atatagacta tgatgaaagt
     4501 gaatttgctt ttgcagattt tagaaatagt atttataaat cctatattaa tatctccata
     4561 ggttgtgata aacactgcac ttattgtata gtgccacata ctagaggaga tgaaatttcc
     4621 atacctttta acatcatcta caaagaagct caaaaagcta ttgaaaaagg cgctaaagag
     4681 attttcttgc taggacaaaa tgtcaataac tatggcaaaa gatttagaaa cgaacataaa
     4741 aaaatggact tttcagatct tttagaagaa cttagcacta tagaaggttt ggaacgcatt
     4801 cgctttacaa gtccacatcc tttgcacatg gatgataaat ttttagaagt ttttgccaat
     4861 aatccaaaag tttgcaaatc catgcatatg cctttacaaa gcggctcaag tgaaatttta
     4921 aaagctatga agcgtggcta tactaaagaa tggtatttaa atagagcttt aaaacttaga
     4981 gaactttgtc caaatgttag catttctaca gacattattg tagcttttcc aggggaaagt
     5041 gaaaaagatt ttgaagagac tgtagatgtt ttggaaaaag tgcgttttga acaaattttt
     5101 tcttttaaat actccaaacg ccctttaaca aaagccgcaa ccatgcctaa tcaaatcgat
     5161 gaagaaatag cttcaagaag acttagcacc ttacaaaatc gtcatagtga aattttagat
     5221 aaaattgtaa aaaaacaaga aaataaaact tttaaagttt tatttgaaga attaagagca
     5281 ggcaatagca ttgctggaag aacagataat aactttttag ttcaagttga aggtagcgaa
     5341 gaacttttag ggcaatttaa agaagtaaaa ataactaatg caaagcgtat ggttttatat
     5401 ggggaaatcg tttaaaatcc attgcttaac atatataatt ttcatcttac aatggcttat
     5461 ttttttaagc tgtaaaaagc actataaagg tgaaaaagtt gaccgtaaag ctggtgtgat
     5521 acttttttgg catggaaaat tagcactcat gccttttgcg tttagacatt atagacaaaa
     5581 aaataaaaaa gcctatgtca tgatctccca ccataaagat ggagagcaaa ttgcaaaaat
     5641 catcaagctt ttcggtcttg atactgtaag aggaagcact tcaaggggtg ctagcagtgc
     5701 acttagagct gcatttaaag ttttagaaca aaatgacgat atagttatca cgcccgatgg
     5761 tccacgaggg ccttatcata gtatttcaga tggttctatc attttggctc aaaaaaaaga
     5821 actaaagata agaattttaa actatgaagc aaatcgtttt tggaaattta aaagttggga
     5881 taagatgatc ttgccaaaac cttttagtaa gattacttat agtctaagtg aacctttgga
     5941 tattttatct ttagataaag aaaaagctaa agaatttcta atgaaacaat ttgataaaat
     6001 tagcttagct gatcaattta aggaatgaaa
//
LOCUS       DAPOLW010000102         5953 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.102, whole genome shotgun sequence.
ACCESSION   DAPOLW010000102 DAPOLW010000000
VERSION     DAPOLW010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5953)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5953)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5953
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.102"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..837
                     /locus_tag="ROE18_001373"
     CDS             <1..837
                     /locus_tag="ROE18_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651545.1"
                     /translation="QIENQKNLIKNQISDNFFEFENILQECSFCDEFSGGLNDAILFD
                     IEMLGILKETAESAFLTTLEKAEDIELTSSEIAKNLVYNAICEAHFEKERILKISSII
                     LNTAFEIANESMAYAKDLCLGVIKGTRDGIVLAMEKFKASLTYANFEEDVSLKSKELI
                     GIEDDFIALLKKEIQLQNDPCKSIVENLLEHELDNLFAKFRRLAGESREQLILVLNDI
                     KKNPKINDFNKLTQRKLNRFKQEIFELEKIASEKYKDLNSKKAKKLGVRLWEKAKKFV
                     KK"
     gene            complement(856..1614)
                     /gene="xth"
                     /locus_tag="ROE18_001374"
     CDS             complement(856..1614)
                     /gene="xth"
                     /locus_tag="ROE18_001374"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HDX3651546.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEQIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYFNSAKRAGYSGVMSLCNFNSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMQFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
     gene            1732..3270
                     /gene="eptC"
                     /locus_tag="ROE18_001375"
     CDS             1732..3270
                     /gene="eptC"
                     /locus_tag="ROE18_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A/FlgG phosphoethanolamine transferase
                     EptC"
                     /protein_id="HDX3651547.1"
                     /translation="MLRLTWFQFTFFNSLMIVLLNFNLFYFVYEKNTQNWFITFVFIV
                     AYFALVHVICSLLFIKFFTKFFSILFIISSFLSVYFISFYGVLIDSDMIQNVVQTDIK
                     EVKDLLNLKLILFVVLALLLVFYVVKVKIDYYGSFKSHLKIKIINIISGLIVVCAVLI
                     PLSKTFLPFFRNYNEIRMYNTPFYQIYAVYRYYVRFVKAKPEFKTIANDAYRENNHTK
                     KLLVLVVGETARAANYSLGGYAKNDTNFYTKKDNVVFFDNFSSCGTATAVSLPCMFSI
                     SKRENYSSSEFQENAMDVLYKTGVDAVWFDNNSGGCKGVCDRLAYKQKLSSDLDENLL
                     APFKEKLNHLSDQNIIVLHLQGSHGPTYYKRYPSEFKKFTPTCDTNELSKCDSEALIN
                     TYDNTLLYTDYLLSEIIKLLKEQKSYESSLFYLSDHGESLGENGIYLHGMPYAIAPSY
                     QTHIPAIFWSNDKNLMNLAKEYKGLKLSQDNLFSTLLGYFDVKTSVYEPEYDLLNPKL
                     KANP"
     gene            3267..3623
                     /locus_tag="ROE18_001376"
     CDS             3267..3623
                     /locus_tag="ROE18_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HDX3651548.1"
                     /translation="MKPKYHFLNNARYALEGLFALFKNEMAFRIELCIIIPAIVFSFF
                     LKISFLEHLLLISVLILILIVEALNSAIEACVDLITNEWHEKAKIAKDCASAAVFFSV
                     LLALFVWGFILYNIYL"
     gene            3620..3865
                     /locus_tag="ROE18_001377"
     CDS             3620..3865
                     /locus_tag="ROE18_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HDX3651549.1"
                     /translation="MKFENLIREILGKKRFELLKFLCENADENGFIMIKISDLEEKLH
                     QSKPTIIATFKFLEEKKLFKRLKNGFYQLNIGDKNET"
     gene            3855..4862
                     /gene="pyrC"
                     /locus_tag="ROE18_001378"
     CDS             3855..4862
                     /gene="pyrC"
                     /locus_tag="ROE18_001378"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HDX3651550.1"
                     /translation="MKLKNPLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPPLC
                     NLEDLKAYKMRILKACKDENFTPLMTLFFKNYDEKFLYSAKDEIFGIKLYPAGITTNS
                     NGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMDRESNFAKIYEKLAKHFPRLK
                     IVMEHITTKTLCELLKDYENLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDK
                     EALCELAFSGYEKVMFGSDSAPHPKDTKECCGCAAGVFSAPVILPVLAELFKQNSSEE
                     NLQKFLSDNTCKIYDLKFKEDKILTLEEKEWQVPNVYEDKYNQVVPYMAGEILKFQLK
                     H"
     gene            complement(4887..5108)
                     /locus_tag="ROE18_001379"
     CDS             complement(4887..5108)
                     /locus_tag="ROE18_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651551.1"
                     /translation="MVKNLIIKFGRLILDAIAAISFVVALLYSLFMMFSIGFLAGLLS
                     LIVSFIALFLSFFVIYLVIDIRDALVNKA"
     gene            complement(5164..5883)
                     /locus_tag="ROE18_001380"
     CDS             complement(5164..5883)
                     /locus_tag="ROE18_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDX3651552.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLNISFQNKSIIDI
                     GCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKKLNLNNIKCENLSFETWMQNNP
                     NVKFDLAFLSMSPALQNEKDYTNFLNLAKIKIYLGWADYRKSDFLDPIFKYFNTEFKG
                     FYKKDLENYLLEKNIFFHKIVFDETRKVQRTKEEAIENALWHLSMNKITTSKEAVSSF
                     VENDIIETIESKIKLLIINNL"
BASE COUNT         2113 a          765 c          876 g         2199 t
ORIGIN      
        1 cagattgaaa atcaaaagaa tttgattaaa aatcaaatca gcgataattt ttttgaattc
       61 gagaatattt tacaagaatg ttctttttgt gatgaattta gtggtggttt aaatgatgct
      121 attttatttg atatagaaat gcttggaatt ttaaaagaaa ccgctgaaag tgctttttta
      181 actacattag aaaaggctga agatatagaa cttacaagta gtgaaatagc taaaaatctc
      241 gtatataatg ccatttgtga agctcatttt gaaaaagaaa gaattttaaa aatttcaagt
      301 attattttaa ataccgcttt tgaaatagct aatgaatcta tggcttatgc aaaagatctt
      361 tgtttaggcg tgattaaagg cacaagggat ggtattgttt tggcaatgga aaaatttaaa
      421 gcttcattaa cttatgcaaa ttttgaagaa gatgttagtt taaaaagcaa agaactaata
      481 ggtatagaag atgattttat tgctctttta aaaaaagaga ttcaattaca aaatgatcct
      541 tgtaagagta tagttgagaa tttgctagaa catgaacttg ataatctttt tgctaaattt
      601 agacgtcttg caggtgaaag cagagagcaa ctaatattag ttttaaatga tattaagaaa
      661 aatccaaaga ttaatgattt taacaaactt actcaaagaa aattaaatcg ttttaaacaa
      721 gaaatttttg aattagaaaa aattgctagt gaaaaataca aagatttaaa ttccaaaaaa
      781 gctaaaaagc tcggtgtaag actttgggaa aaagcaaaaa aattcgttaa aaaataatat
      841 cccatttttg ggatattaaa tatctatttc tatacctaca ggtgcgtgat cagagccaaa
      901 aatatcatct cttatgaaag cgtttttaag tttatctttt aaaccctttg aaatgaaaaa
      961 ataatcaatc ctccagccta catttctttc tcttgctttc attctatagc tccaccacga
     1021 gtatttttct ttgatttcgc cattaatttc tctaaaagta tctataaaac caagctttag
     1081 caaatcatca atccaagctc tttctatagg taaaaaacct gaagtgttgg cattggcttt
     1141 tggatgagta agatcgattt ctttatgagc ggtattgaca tcaccgcaaa tgataatttc
     1201 aaatccatcc tttaaaagct tatccaaata cactaaaaaa tctgcataaa attgcatctt
     1261 aaaatttaaa cgctcttcat ctttttgacc atttggaaaa tagatattaa aaagtgcaat
     1321 atttttaaag cggtgttcta aaaccctacc ttcttcatca tcaaaaaatt cgcatttttt
     1381 tacttcgcta ttaaaattac aaagactcat taccccagaa taccccgctc ttttagcaga
     1441 attaaaatac atgtgtttaa aaggatattc ataaattttt ttaggaaatt tatcttcatg
     1501 tgctttgatt tcttgaaaac ctataaaatc aatttgttct tgtgctatcc aatcaagtgc
     1561 atttttatca caaatagctc ttaagccatt gacattccat gaaagtagtt tcattatttt
     1621 ccttaaaatt ttcattaaaa gtgtaaatca taacataaaa agatttaaaa ctacaatcca
     1681 tttaaaaaaa ttcaataaaa ttaaaagctt aaatttgaag gtgggattta tatgcttaga
     1741 ttaacttggt ttcagtttac tttttttaat tctttgatga ttgtattgtt gaattttaat
     1801 ttattttatt ttgtgtatga aaaaaataca caaaactggt ttataacttt tgtttttatt
     1861 gtggcctatt ttgcccttgt tcatgtgatt tgctctttgc tttttataaa gttttttact
     1921 aaattttttt ctatattatt tataatatca tcttttttaa gtgtttactt tattagtttt
     1981 tatggggtgc ttatagattc tgatatgata caaaatgttg ttcaaacaga tatcaaagaa
     2041 gtaaaagatt tgttaaattt aaaattaatc ttatttgttg ttttggcttt attgttggtt
     2101 ttttatgttg ttaaagtaaa aattgattat tatggtagtt ttaaatccca tctaaaaatt
     2161 aaaattatca atataatatc aggtttgatt gttgtttgtg cggttttaat ccctttaagt
     2221 aaaactttct tgcctttttt tagaaactat aatgaaataa gaatgtataa tacccctttt
     2281 tatcaaattt atgccgtata tcgctattat gttcgttttg taaaagctaa gccagaattt
     2341 aaaactatag ctaatgatgc ttatagagaa aacaatcaca ctaaaaaact tttagttttg
     2401 gtagtgggtg aaaccgctag agcggcaaat tactctttgg gtggatatgc taaaaatgat
     2461 accaattttt ataccaaaaa agataatgta gtgttttttg ataatttttc atcatgtgga
     2521 acagcaacag cggtaagttt gccttgtatg ttttctattt ctaagcgtga aaattattca
     2581 agttcagagt ttcaagaaaa tgcgatggat gtgctttata aaacaggtgt agatgctgta
     2641 tggtttgata ataattctgg tggttgtaaa ggggtttgtg atagattagc ttataagcaa
     2701 aagctttcta gtgatttgga tgaaaattta ctcgcccctt ttaaagaaaa attaaatcat
     2761 ttaagtgatc aaaatataat agttcttcat ttgcaaggtt ctcatgggcc aacttattat
     2821 aaacgctatc caagcgaatt taaaaaattt actccaactt gtgatactaa tgaactttca
     2881 aaatgtgata gcgaggcttt aatcaacact tatgataata ctttgcttta tacagactat
     2941 cttttaagtg agattataaa actattaaaa gagcaaaaaa gctatgaaag ttctttgttt
     3001 tatctttcag atcatggtga aagtttgggt gaaaatggta tttatcttca tggtatgcct
     3061 tatgctatag caccaagtta tcaaactcat attcctgcta ttttttggag caatgataaa
     3121 aatttaatga atttagctaa agagtataaa ggtttaaaac tttctcaaga taatcttttt
     3181 agtactcttt taggatattt tgatgtaaaa acaagtgttt atgaaccaga atatgattta
     3241 ttaaatccta aacttaaggc aaatccatga agcctaaata tcatttttta aataacgcaa
     3301 gatatgcttt agaagggctt tttgctttat ttaaaaatga aatggcgttt agaattgaac
     3361 tttgcattat tatccccgcg atagttttta gttttttctt aaaaattagt tttttggagc
     3421 atttgttatt gataagtgtc ttaatactta tcttaattgt agaagcttta aattcggcta
     3481 ttgaagcttg tgttgatttg attacaaacg aatggcatga aaaggcaaaa atcgctaaag
     3541 attgtgcgag tgcggcagtg ttttttagtg tgcttttagc tctttttgtt tggggcttta
     3601 ttttatataa tatttactta tgaaatttga aaatttaata cgagaaattt taggaaaaaa
     3661 gcgttttgaa ttgttaaaat ttttatgtga aaatgccgat gaaaatggtt ttattatgat
     3721 taaaatcagt gatcttgaag aaaaattaca tcaaagtaaa cctaccatca tcgctacttt
     3781 taagttttta gaagaaaaaa aactttttaa gcgtcttaaa aatggatttt atcagctaaa
     3841 tataggagat aaaaatgaaa cttaaaaatc ctttagatat gcatttgcat ttaagagata
     3901 accaaatgtt agaacttatt gcacctttga gtgcaagaga tttttgtgca gctgtgatta
     3961 tgccaaattt aatccctccg ctttgcaatt tagaagatct aaaagcttat aaaatgcgta
     4021 tccttaaggc ttgtaaagat gaaaatttca ctcctttaat gacacttttt tttaaaaatt
     4081 atgatgagaa atttctttac agtgctaaag atgaaatttt tggcattaag ctttatccag
     4141 caggaattac aacaaattca aatggtggag tttcaagttt tgatatagag tatttaaaac
     4201 ctactttaga ggctatgagt gatttaaata ttcctttgct agtgcatggt gaaaccaatg
     4261 attttgtaat ggacagggaa agtaattttg ctaaaattta tgaaaaatta gccaaacatt
     4321 ttccacgact taagattgtt atggagcata ttaccactaa aactttatgt gaacttttaa
     4381 aagattatga aaatttatac gcgacaatca ctttacatca tttaatcatc actttagatg
     4441 atgttatcgg aggtaaaatg aatcctcatc ttttttgtaa gcctatagcc aagcgttacg
     4501 aagataaaga agccctttgc gaacttgctt ttagtggtta tgaaaaagtt atgtttggaa
     4561 gtgatagtgc gcctcatcca aaagatacta aagagtgttg cggttgtgcc gcaggtgtat
     4621 ttagtgcccc agtgatttta cctgttttag ctgaattatt taagcaaaat agctcagaag
     4681 aaaatttgca aaaattttta agcgataata cttgtaaaat ttatgattta aaatttaaag
     4741 aagataaaat tttaacttta gaagaaaaag aatggcaagt accaaatgtt tatgaagata
     4801 aatacaatca agtcgtgcct tatatggctg gagaaatttt aaaatttcaa ttaaaacatt
     4861 gatttcccac cttaaagatg gaaaatttaa gctttattta caagagcatc tctgatatct
     4921 ataacaagat agattacaaa aaaacttaaa aataaagcaa taaaactgac tatcagcgat
     4981 aataaaccag ctaaaaatcc aatgctaaac atcataaaaa gagaataaag caaagctaca
     5041 acaaaactta tcgctgcaat tgcatcaaga atcaagcgtc caaatttgat gattaaattt
     5101 ttaaccatta aaaactcctt tgaaataatg agtgaaattg taataaatat cagcttaata
     5161 tttttataag ttatttataa ttaaaagttt tattttagat tctatagttt caataatatc
     5221 attttcaaca aaagaactta cagcttcttt agaagttgtg attttgttca tgcttaaatg
     5281 ccatagagca ttttctatag cctcttcttt tgttctttgg actttgcgtg tttcatcaaa
     5341 aacaatctta tgaaaaaata tatttttttc tagtaaataa ttttctaaat cttttttata
     5401 aaaaccttta aattcagtat taaaatattt aaaaatcgga tctaaaaaat cactttttct
     5461 ataatcagcc caaccaagat aaatttttat tttggctaga tttaagaaat ttgtataatc
     5521 tttttcattt tgtaaagcag gagacatact taaaaatgca agatcaaatt taacattagg
     5581 attgttttgc atccaagttt caaagctcaa attttcgcat tttatattgt taagatttag
     5641 ttttttagca tcttcttgta aaatttcaag catagtattt gcactatcta gggctaaaat
     5701 ttctttagct tctttagcta agtgtaaagt ccaaacccca gttccacatc ctatatctat
     5761 aatgctttta ttttgaaaag aaatatttaa attttgtaaa tattcaaaag tttgcttttg
     5821 tatggtgttt aaagtgtttt gatatcttgc gtaagttttg gcctttttat cccataaatt
     5881 catatatttt ccttgataaa atatataaaa tcatagcata aatttttaaa attcaagccc
     5941 tttttttggg ctc
//
LOCUS       DAPOLW010000103         5933 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.103, whole genome shotgun sequence.
ACCESSION   DAPOLW010000103 DAPOLW010000000
VERSION     DAPOLW010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5933)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5933)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5933
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.103"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..452
                     /locus_tag="ROE18_001381"
     CDS             <1..452
                     /locus_tag="ROE18_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="1-pyrroline-5-carboxylate dehydrogenase"
                     /protein_id="HDX3651553.1"
                     /translation="VNIRGEDNLFSYTKIKNMVLRLCGNESLKDVLGVVLGANIANID
                     LSISYDEQDVSMIERIVQSIGAKVLFLKENKENFIKSIKEYERVRYLAKPDVNDEIYK
                     EAAKLAKIIIREKPLLNGRFELLNYFNEKALSISFHRYGNLGIRAIS"
     gene            470..1939
                     /gene="putP"
                     /locus_tag="ROE18_001382"
     CDS             470..1939
                     /gene="putP"
                     /locus_tag="ROE18_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HDX3651554.1"
                     /translation="MEVVQINTPIAVMFVVYALLMLYIGFYFYKQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGIVSIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHIVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLVASAVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(1955..2182)
                     /gene="yedF"
                     /locus_tag="ROE18_001383"
     CDS             complement(1955..2182)
                     /gene="yedF"
                     /locus_tag="ROE18_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDX3651555.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLKSGEILEVLCDCPQSI
                     NSIPQDVKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(2186..3394)
                     /gene="yedE"
                     /locus_tag="ROE18_001384"
     CDS             complement(2186..3394)
                     /gene="yedE"
                     /locus_tag="ROE18_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HDX3651556.1"
                     /translation="MNSFKQKYLINFWDNPRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKPKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGMIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWTYRAFEGQSHFIIV
                     GIANIIGTMILALSYDFLPKAFKEGIKINLLTEFGNLNGFFINLILFILMFVFVVFYK
                     KHFFKNQLKG"
     gene            3534..3631
                     /locus_tag="ROE18_001385"
     tRNA            3534..3631
                     /locus_tag="ROE18_001385"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3568..3570,aa:Sec,seq:tca)
     gene            3659..4909
                     /locus_tag="ROE18_001386"
     CDS             3659..4909
                     /locus_tag="ROE18_001386"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HDX3651557.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALIK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGALTGLGLNPKEAGNIIGIVKAYATRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            4906..5334
                     /locus_tag="ROE18_001387"
     CDS             4906..5334
                     /locus_tag="ROE18_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FliJ family protein"
                     /protein_id="HDX3651558.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEHEKAYELSRQEC
                     ESLGVLPKSGSIAELRSNLSMAQVGREALARAKEKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKELAKAEEKFLDEIAISRFFKGEKDD"
     gene            5327..5845
                     /locus_tag="ROE18_001388"
     CDS             5327..5845
                     /locus_tag="ROE18_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HDX3651559.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEEQQKILNSIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
BASE COUNT         2087 a          774 c         1146 g         1926 t
ORIGIN      
        1 atgtcaatat tcgtggagaa gataatcttt tttcttatac taaaataaag aatatggttt
       61 taagactttg tggaaatgaa agcttaaaag atgttttagg tgtggtttta ggtgcaaata
      121 ttgcaaatat tgatctaagt atcagttatg atgaacaaga tgttagtatg atagaacgaa
      181 ttgttcaaag cataggagca aaagtattgt ttttaaaaga aaataaagaa aattttatca
      241 agagtattaa agaatatgaa agagtgcgtt atttagcaaa gccagatgta aatgatgaga
      301 tttataaaga ggctgcaaag cttgctaaaa tcattataag agaaaagcca ttattaaatg
      361 gtcgttttga acttttaaat tattttaatg aaaaagcttt aagtatatct tttcatcgtt
      421 atggaaattt aggcattaga gcaatatctt aatgatcaag gagagattga tggaagtggt
      481 tcaaattaat accccaatag cagtgatgtt tgtagtgtat gccttattaa tgctttatat
      541 aggtttttat ttttataagc aaaataaaaa ttcagaggat tattttctag gtgggcgtac
      601 tatggggcct gtgatatctg cacttagcgc aggggcttct gatatgagtg gttggctttt
      661 aatgggttta ccaggagctt tatatgtaag tggttttata gattcttata ttgcaattgg
      721 gcttactata ggagctagtt taaattggat ttttgtggca aaaagactta gaatttatac
      781 cagtgtgatt gcaaattctt tgactattcc tgattatttt gaaactcgtt ttgatgatga
      841 taaacatata ctgcgcattg tatgtgcggt ggtaattttg atatttttta ccttttatgt
      901 ttcatcaggg cttgtaagcg gagcaaaact ttttgaaagt acttttggta tcagatacga
      961 ttatgcttta actactggaa cgattattat tgttgcttat acttttttag gtggatataa
     1021 ggcggtttgt tggacggata tgatacaagg gcttttaatg atgatggctt taattattgt
     1081 acctttggtt atgctttatc atttaggtgg ttttggtgaa gcgatgaata tagtaagaga
     1141 aataaagcca caagctttat ctatgggcga aggagtagga attgtaagca ttatatctgc
     1201 acttgcttgg ggtttgggtt attttggtca accacatatt ttagtgcgtt ttatgtcgat
     1261 tcgttctact aaagatattc ctatggccac ttttataggt attgcttgga tggcggtttg
     1321 tcttttaagt gcttgtatga taggtatttt aggtatagct tatgtgcata aatttgaatt
     1381 aagtttgcaa gatcctgaaa agattttcat cgtgatgtcg cagcttttat ttaatccttg
     1441 gatagcaggt attttactta gtgctatttt agcggctatt atgagtacgg caagttcaca
     1501 attgctggtt tcaagttcta ctatagcgga agatttttat aaaaagattt ttagagaaga
     1561 tgcaccaagt catattgtat taaatttagg taaattaggt gttttattgg tagctgtaat
     1621 agcgtttttg atttctactg ataaaaactc aagtgttttg agtatagttt cttatgcatg
     1681 ggctggattt ggagcttctt ttggttctgt aatgcttttt tctttatttt ggagtaggat
     1741 gacaagagta ggagcgatct taggtatgat aacaggagct gctactgtgg tgctttggaa
     1801 gaattttgca aattcaggtc tttatgaaat agttccaggg tttttagtag cttcggcggt
     1861 gattattatt gcaagtttgt ttacaaatgt aagatctgga actaaagcag cttatgaaaa
     1921 gatgttaaaa gagctttgag aacaaaagcc ttttttaagg cttttgtatt aaaaatctta
     1981 gcgtgggtcc actttgatcg atttcaagca ctttaaaacc acggtttttt acatcttgag
     2041 gtatggaatt gatactttgt gggcaatcgc aaagcacttc caaaatttct ccacttttaa
     2101 gcttaggtaa gacatcaagt gttgctatag caggataagg acaagcttca ccttgtaaat
     2161 ttaaactata agtaattttc actgtttatc ctttaagttg atttttaaaa aagtgttttt
     2221 tgtaaaatac tacaaaaaca aacattaaga tgaataaaat aaggttgata aaaaatccat
     2281 ttaaattgcc aaattcagtt aaaagattga tttttatacc ttctttaaaa gcttttggta
     2341 aaaagtcata acttaaagct aaaatcatag ttcctattat atttgcaatt cctactatta
     2401 taaaatgact ttgtccttca aaggcacgat aagtccaacc acactcgcaa cctccggcaa
     2461 aaactatacc aaaaccaaac aaaaatgctc ccacagctac agcaggagaa agttctatga
     2521 gtttgctagt atgaccttgc aagataaaag caaaagcgat taaagaggcg ataatcatac
     2581 cgattaatgc gccttttata gcattatctc taccaaataa aaataaatct ctaaagcaag
     2641 aagtaaaaca aatttgccct ctagaaataa caaaaccaaa aacaaaacca aaaatcagtg
     2701 ctaaagctag aagactttgt ttgttttgtg tgctgatatt gccatttgta aaaacaagat
     2761 aaaacaccca aactaaaaag gctatgaaaa gcaatatgcc taagttaaaa tataattttg
     2821 tacgcaaact ttgcttgttt aacggcaagt tttctttatt tacacgttct aatttagctt
     2881 taggtttaaa aaaggaagtg ttgcaaattt tcactcctag ataaattcct aaaaccataa
     2941 aaacagtaaa aagccaagtg tgtaaagaaa aataaggtaa acctgtaaaa aaattagcta
     3001 aattgcatcc aaatgcaagt cttgctccat atcctgaaag aattccacct actattgctt
     3061 gaaaaattct tatattgcta gcaggtagac gaaatttgac tttgttagct aaaagtgcgg
     3121 ctactaaaca acctataaac atacctatga gcataatacc atcagttctt gttaaagggg
     3181 ttccatttaa attttgcttt tggtaataag aatatccatc taaattcata cctaaaagct
     3241 ctaaaaactc gccaccccaa cgtgtcattt ctccagtaac agcccaaacg ccaccaaaaa
     3301 tcccaaaata cactgcactt aaaattccaa gtgcaatcat agaacgggga ttgtcccaaa
     3361 aattgattaa atatttttgt ttaaaagaat tcaaagaaag atcctaaaaa tgtaatcatc
     3421 aaaacttgat gctaaaaaag agtgagatta tagcttaaat ttaatatgaa gtcaaaaaga
     3481 atattgataa atttattttg tttttcatta aaaatcgcta taattatcac tttggaagat
     3541 tagcgtatct ggtgatcgcc actgacttca aatcagatga aaggatagtt gactattctt
     3601 tggggagttc gattctctca tcttctcgcc aatattaagt aaaatcaagg aaatttttat
     3661 gagcaaagca gatattattg tcggcattca atggggcgat gaaggaaaag gtaaggtagt
     3721 tgataaatta tgtgaaaatt atgattttgt ttgcagaagt gcaggtggac acaatgcagg
     3781 acatacgatt tgggtaaatg gtgtaagata tgcgcttcat cttatgccaa gtggagtttt
     3841 gcatccaaga tgtattaata ttatcggaaa tggagttgtg gtttctcctg aagtattgat
     3901 tgctgaaatg gctcaatttg aaaatttaaa aggtagatta tatatcagcg atagagctca
     3961 tttaaattta aaacatcatt ctttaataga cattgcaaaa gaaaagctca aaggcaaaaa
     4021 tgccatagga acaacaggta agggtatagg accttcttat gcagataaga ttaatcgtac
     4081 aggacataga gttggagagc ttttagaacc acaaagactt tgcgaggctt tgataaaaga
     4141 ttttgaagct aataaaactt tttttgaaat gcttgaaatt gaaattccaa gtgctgaaga
     4201 attgcttgct gatttaaaac gttttaatga aattttaact ccttatatta cagatactac
     4261 aagaatgctt tggaaggctt tagatgaaga taaaagagta cttttagaag gagctcaggg
     4321 ttctatgctt gatattgatc atggaactta tccttatgtt acaagttcaa gtactatttc
     4381 agcaggcgct ttaacaggac ttgggttaaa tcctaaagaa gcgggaaata ttataggtat
     4441 tgtaaaagct tatgcaacgc gcgtgggaaa tggagctttt cctactgagg ataagggcga
     4501 agatggagaa aaaattgcgc aaattggaaa agagattggc gtaagcacgg gacgcaaaag
     4561 acgctgtgga tggtttgatg cggttgctgt aagatataca gcaaggctta atggtcttga
     4621 tgctttatct ttgatgaagc ttgatgtttt agatggtttt gaaaagataa aaatttgtcg
     4681 tgcttatgaa tataagggta tggaaatcga ctatatacca agtgatttag aaaatgttca
     4741 acctatttat gaagaaatgg atggttggga taaagttttt ggtataaaag attatgattt
     4801 attgccagaa aatgctaaaa aatatatagc aagacttgaa gagcttgcag gggttaaggt
     4861 aaagtatatt tctactagcc ctgaaagaga tgatactatc atcttatgaa aagtaaatat
     4921 aattctgttg taaaggtaag aaaacaacaa cttgataaag cagaatcaaa tcttaatcaa
     4981 gccaaacaaa gacagcttga acatgaaaaa gcttatgaac tttcacgcca agagtgtgaa
     5041 agtttaggcg tattgccaaa atcaggatct atagcagagt taagatcgaa tttaagtatg
     5101 gcacaagtag gacgcgaggc tttggcaaga gctaaggaga aagtagaact ttctaaaaaa
     5161 gaaatgaatc attatcagtt tttatatcaa aaagcacatt tagattatga aaaaatgaag
     5221 gttttagaag ccgaggaaat taaacaaaag caaaaagaac ttgccaaggc tgaagaaaaa
     5281 tttttagatg aaattgcaat cagtcgtttt ttcaaaggag aaaaagatga ttaaaaaatt
     5341 tatattgtta gtttttattt caagtgtagt ttttggagct gaacaagatt gtgagcagta
     5401 ttttgaagct agaaaagctc aaattgaatt gcaaactaga gaatttgatg aagcaagaca
     5461 atctttagaa gcttataaag cctcttttga agctttgcaa aaagaaaggc ttgaaaattt
     5521 agaaaaaaaa gaggctgagg ttaatgcaac tttggcaaaa attgaagaat taaagcttga
     5581 aaacgcaagg cttgtagaag aacaacaaaa gattttaaat tcaatcaatg ataaaacaca
     5641 aggtagggtt aaagaaattt attcccaaat gaaagatgca gccattgcag atgttttaag
     5701 tcaaatggat gcagaggatg caagcaaaat aatgctttct ttggaatcgc gtaaaatttc
     5761 aggtgtttta tctaaaatgg atccaaaaaa agctagcgag cttactttgc ttttgaaaaa
     5821 tttagataat aatgctagta attaggtgat taaaataatg aaaatttttc atttttaaca
     5881 ttcttttacc aaaaataagc tattatttca aacattatca aataaaaggt ttt
//
LOCUS       DAPOLW010000104         5784 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.104, whole genome shotgun sequence.
ACCESSION   DAPOLW010000104 DAPOLW010000000
VERSION     DAPOLW010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5784)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5784)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5784
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.104"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            81..281
                     /gene="rpmE"
                     /locus_tag="ROE18_001389"
     CDS             81..281
                     /gene="rpmE"
                     /locus_tag="ROE18_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HDX3651560.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            284..1108
                     /gene="rsmI"
                     /locus_tag="ROE18_001390"
     CDS             284..1108
                     /gene="rsmI"
                     /locus_tag="ROE18_001390"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HDX3651561.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLL
                     NIKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVVYLSDAGMPGISDPGKTLVEF
                     AQENNIAYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPS
                     IIYESPKRILSLVEQIMILDSQREIFLIKEISKKFEKKFKGNAKELFEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELPLKAKAKLLSKINGKNAKEIYQKLLLSQD"
     gene            1122..1805
                     /gene="rlmB"
                     /locus_tag="ROE18_001391"
     CDS             1122..1805
                     /gene="rlmB"
                     /locus_tag="ROE18_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HDX3651562.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKITFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIAISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            1798..2736
                     /locus_tag="ROE18_001392"
     CDS             1798..2736
                     /locus_tag="ROE18_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651563.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSSNAWPFLIV
                     LIVLVIIGSGIYYFDTLKTFFKDEQNNTSATVIDIIGQAQENLKSLSGNNVVVIDNNK
                     AQETNQTESVLPSQNTSLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTLKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLNKDQLILTGAAALTMFDQENK
                     EQKFPAGISKRFLIKDGKITSISAAEFVKLNKGKEW"
     gene            2730..3536
                     /locus_tag="ROE18_001393"
     CDS             2730..3536
                     /locus_tag="ROE18_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651564.1"
                     /translation="MVKKIIILTFWVNISFAISSLELAKNLVNNPSKNSQLELLFSNN
                     SYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLRLNFKAKADEVMFFKILSDVLTDA
                     GYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYIDNIKRIGAYDYEY
                     DLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVLDLKNATNLIIDANDLDNWFPKIFFLD
                     KNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRGLKITLKK"
     gene            3548..4750
                     /locus_tag="ROE18_001394"
     CDS             3548..4750
                     /locus_tag="ROE18_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HDX3651565.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPD
                     GKTPQHIIDKLCESANKDKTSRYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVAIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPRPKYVVVNFPHNPTTVTCEKSFYERLIATAKKERFYIISDIAYA
                     DLTYDDYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKE"
     gene            4754..>5784
                     /locus_tag="ROE18_001395"
     CDS             4754..>5784
                     /locus_tag="ROE18_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HDX3651566.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALARSP
                     KKNALIPITHSVAEILNADVDVFVELMGGVDEAFKIVSEILKKKKAVVTANKAMLAYH
                     RYELENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFKQALQIAQNLGYAEADPTFDIEGQDAAHKLLVLSSIAYNLKAKPEDILIEGIS
                     EIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLGESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYKLLSKDEIYT
                     KYYLRVKVE"
BASE COUNT         2201 a          738 c         1002 g         1843 t
ORIGIN      
        1 aacttttctt aaattaatct cttttttatg ttaaataatt tataatcacg gcttattgtt
       61 ttaattttta aggaaaacta atgaaaaaag aaattcaccc agaatatgta gaatgcaaag
      121 taagttgtgc ttgtggaaat acttttacaa caaagtcaaa caaagcagaa ttaagagtag
      181 atatttgttc aaattgccat ccttttttta caggcagtga aaaaattgta gatgctgcag
      241 gtcgtgtaga gaaatttaag aaaaaatacg caatgcaata attatgcttt attttattcc
      301 tactcccata ggaaatttaa gcgatatttc ttttagagcc ttagaacttt taaagacttg
      361 cgatcttgtg ttttgtgaag atacaagagt aagtaagtct ttgatttcgt tattaaatat
      421 caaatttcac actgatatac atatttctaa atttatagcc ttacactccc ataatgaaaa
      481 agaagtttta gcgagtattg atttaaagat atttgaaaaa aatgtagttt atttaagcga
      541 tgcaggaatg ccagggatta gtgatcctgg caagactttg gtagaatttg cacaagaaaa
      601 taatatcgcc tatgaaattt taccaggtgc aaatgcagcc ttagttgctc ttgtaagctc
      661 agcattttgt caaaaagaat ttatctttat tggtttttta gcaaataaag gcaaagaaag
      721 acaaaaagat atagaaaaaa ttttaaactt tccttatcca agtattattt acgaatcccc
      781 caagcgtatt ttatctttag tagaacagat tatgattcta gacagccaaa gagaaatttt
      841 tttgattaaa gaaatcagta aaaaatttga aaaaaaattt aaaggcaatg ctaaagagct
      901 ttttgaaatt ttaaaaaagt ctaatttaaa cggtgaatgg gttgtagtac tgcaatcaaa
      961 agaacaaaat tttttgcaaa atactctttg tgaaaaagat attatggatt tagagctgcc
     1021 tttaaaagca aaagcaaaat tattatcaaa gatcaatgga aaaaatgcaa aagaaattta
     1081 tcaaaaactg cttttaagtc aagattaggt aaaattttaa tatgatagtt tatgggaagc
     1141 aaatattttt ttatatttta gaatatcata aagactgtat caatgagctt tatttagcaa
     1201 aagaatgtga taaaattact ttttccaaaa tcgcaaaatc aggttttaaa atcaaaaaac
     1261 ttgattttaa aactgctcaa gcttatgcga aaggtggcaa tcatcaaggt tttttgctag
     1321 atattaaaga aagttctttt gcgaatttaa atgagatcaa aaaaaatgat tttattgtta
     1381 tgctttatgg aattagcgat gtaggaaata taggggctat cacgcgtaca gcttatgctt
     1441 taggggttgg ggctttaatt tttattggtg aaaaattagc catggaagga gtaattcgca
     1501 caagcagcgg agcggctctt gatttaccta ttgcaataag caacgatgct ttaagtgtaa
     1561 taaacgaact aaaacaagta ggtttttatt tttatgcgag cgatggctcg ggaaaagaaa
     1621 ttcacagtgt aaaaataagc aatggtaaaa aagttttagt tttgggtagt gagggttttg
     1681 gtttaagctc taaaattata aaaaaatgcg atgaatgtgt aggcattgcg atgaaaaata
     1741 attttgatag tcttaatgtc agcgctgctt ttgcaatact ttgtgatagg atgttaaatg
     1801 cttaattgga aaaaaataca agaattaaat ttaaaagaag ttgcagcaaa aacgcaaatt
     1861 gaacttgatt ttcttgaagc tttagtagaa aagaattttg ctgttttaag tcgttttaat
     1921 gttaaaggtt ttgttaaaat tttaagcaga gaatacgaac tcgactttag tgattttaac
     1981 gaagagtatg aagcttatct taacgaaaac aatcctactc cacaaacaaa atcaaaaatg
     2041 ataaccccaa aactagatgc ttatagtcaa aaatcctcta acgcttggcc ttttttgatt
     2101 gttcttattg ttttagtgat tataggaagc ggaatttatt attttgatac acttaaaact
     2161 tttttcaaag atgaacaaaa taatactagt gcaacagtta tagacataat aggacaagca
     2221 caagaaaatt taaaatcttt aagtggaaac aatgttgttg ttatagacaa caataaagca
     2281 caagaaacaa atcaaacaga gagcgtttta ccaagccaaa acacctcatt acaagaaaat
     2341 gataaaaaca taagcataga aaataatatc agtgaaaata acacaactct actcgatgaa
     2401 gaaaaaaata cccaaatcca agaagacaca aatacactaa aaactgattc tttaaaagaa
     2461 gcacatttta aaacctctac caagatttgg ataggtttaa tagatttaaa aagtcttaaa
     2521 aaaacaagct ttgttaaaga aaaagatttt aatatttctt taaataaaga tcagttaatt
     2581 ttaacagggg ctgcagcttt aacaatgttt gatcaagaaa ataaagaaca aaaatttcct
     2641 gcaggaattt caaaacgttt cttgattaaa gatggaaaaa ttacaagtat ttcagctgct
     2701 gaatttgtaa aattaaataa aggtaaagaa tggtaaaaaa aattattatt cttacttttt
     2761 gggttaatat atcttttgca atctcaagtc ttgaattagc aaaaaattta gtaaacaatc
     2821 ctagtaaaaa ttctcaacta gaattattat tttcaaataa ttcttacata gataataatg
     2881 gaaattgtga tattgcaaaa atatctcaaa tattaaaaac caattcttta attgccttaa
     2941 cactatcaaa tcctcaaagt ctaagactaa attttaaagc aaaagctgat gaagttatgt
     3001 tttttaaaat tttatccgat gttttaacag atgccggata tatatatttt atccctacag
     3061 atttgatttt aagagaagga aatattgact ataccataca agtagaatct caatatgttt
     3121 tagatcctgg aacgctttac aatctcttaa aagaaaattc tgtctatata gataatatta
     3181 agcgcattgg ggcatatgac tatgaatatg atttaaattt ttccaatgct gtattaaaaa
     3241 ccaatacaaa tgttaattta aatactccaa aatcattaga aaaacccctt aaagactatg
     3301 tgcttgattt aaaaaatgct acaaatttga ttattgatgc aaatgattta gacaattggt
     3361 ttcctaaaat cttcttttta gataaaaatc tgaatctaat taaagcagta aaaagcgaaa
     3421 ataaaaataa tcatttttca gaacttattc caaatggtgc tatatatgct attgtaagcg
     3481 atatgtatag tttagataat atacgcaggg gtttaaaaat cacacttaaa aaataaagga
     3541 ttaagaaatg tttgatgaaa tccgttttaa taccatagaa agacttccaa attatgtttt
     3601 cgcagaagta aatgcgataa aaatggcagc aagacgtgct ggagaggata tcatcgactt
     3661 ttcaatggga aatcccgatg gtaaaactcc acaacacatt atagataaac tttgtgaaag
     3721 tgctaacaaa gataaaacct cgagatattc tacatccatg gggatttata aacttcgctt
     3781 agcaatttgt aattggtata aaagaaaata taatgtcaat ttagatcctg aaaatgaagt
     3841 tgtagctact atgggttcaa aagagggttt tgtaaatctt gcaagagcga ttataaatcc
     3901 tggagatgtt gctatcgtgc caactcctgc ttatcctata catactcaag cttttattat
     3961 agcaggaggt aatgtagcaa aaatgccttt agcttataat gaaaaatttg agcttgatga
     4021 aaatcaattt tttgaaaatt tacataaaac tttaaatgaa agcatcccac gcccaaaata
     4081 tgtcgttgtt aatttcccgc ataatccaac aacagtaact tgtgagaaaa gtttttatga
     4141 aagattgata gcaacggcaa aaaaagaaag attttatatt atttcagata ttgcttatgc
     4201 agatttaact tatgatgact ataaaactcc ttctattttg gaaattgaag gcgcaaaaga
     4261 tgtagcggta gaaacttaca ctctttcaaa atcttacaat atggcaggct ggcgcgtggg
     4321 ttttgtagta ggaaataaac gcttagtcag tgcgcttaaa aaaataaaat cttggtttga
     4381 ttatggtatg tacacaccta ttcaagtagc agctaccata gctttagatg gagatcaaac
     4441 ttgtgtagat gaaatccgtg caacttatga taaaagaatg cacattttac ttgaagcttt
     4501 tgaaaatgca ggctggaaac ttcaaaaacc aagagcaagt atgtttgttt gggcaaaact
     4561 ccctgaaagc aaaagacatt taaaaagttt agaattttca aagcaacttt tacaacgcgc
     4621 tagtgttgca gtaagtcctg gggtaggttt tggcgaagca ggtgatgagt atgtaagaat
     4681 tgctttaatt gaaaatgaaa atcgcatacg ccaagctgca cgcaatatca aaaaatattt
     4741 aaaagagtaa gttatgaaag tagcgattct tggttatggc actgttggaa gtgcggtggt
     4801 taaatttctt ttagaaaatg ataaacttat tcgtgcaaga tgtgggcaaa gcataactcc
     4861 tgtgatcgct cttgctagaa gtcctaaaaa aaatgcttta attccaatta ctcatagcgt
     4921 tgcagaaatt ttaaatgctg atgtagatgt ttttgtagaa ttaatgggtg gggtggatga
     4981 agcttttaaa atagtgagtg aaattttaaa aaagaaaaaa gctgttgtta ctgcaaataa
     5041 agctatgctt gcttatcatc gttatgaact tgaaaattta gctaaaaatt tagcttttgg
     5101 ttatgaagca agtgtggctg gaggaattcc tattatcaag gttttaaaag aaggtttaag
     5161 tgcaaataat attttggcta taaaagggat tttaaatggt acgagtaatt atattttaag
     5221 ttctatgagt caaaaaaata tgagttttaa acaagcctta caaatagctc aaaatttagg
     5281 ttatgcagaa gctgatccaa cttttgacat agaaggacaa gatgcagctc acaaactgct
     5341 tgttttatca agtatcgctt ataatcttaa agctaaacct gaagatattt tgatcgaggg
     5401 tattagcgaa attgcgcctg aagatatgta ttttgctaat gagtttgaat ttaccataaa
     5461 acttttaggt atagctaagg tgcgtgaaaa taaagtagaa ttaagagtgc atcccactat
     5521 gatagataaa gaaaaaatgc ttgcaaaagt tgatggagtg atgaatgcta taagcattaa
     5581 tggagatttg ctgggtgaaa gtttgtatta tggagcagga gcaggaggag aggctactgc
     5641 aagtgctgtg atttcagatc ttatggatat agcaagagat caggtaaaag caccaatgct
     5701 tggttttgtg aatactttag aatacaagct tttaagcaaa gatgaaattt atacaaaata
     5761 ttatttaagg gtgaaagttg aaga
//
LOCUS       DAPOLW010000105         5761 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.105, whole genome shotgun sequence.
ACCESSION   DAPOLW010000105 DAPOLW010000000
VERSION     DAPOLW010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5761)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5761)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5761
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.105"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            160..1341
                     /locus_tag="ROE18_001396"
     CDS             160..1341
                     /locus_tag="ROE18_001396"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HDX3651567.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHP
                     ALREALDKLYAGLGANDLDDIIVTSCATESINWVLKGVYFDYILDKERNEVIISSVEH
                     PAVTAAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
     gene            1351..2322
                     /locus_tag="ROE18_001397"
     CDS             1351..2322
                     /locus_tag="ROE18_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HDX3651568.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     TEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(2346..4229)
                     /locus_tag="ROE18_001398"
     CDS             complement(2346..4229)
                     /locus_tag="ROE18_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HDX3651569.1"
                     /translation="MKKIIFSLCFFILYLGAQEFKFIDANISKEDEGIYALVEKYVDL
                     NNQIKEFKKNNDENSSTFNGILSEFEKDKKTILAKIPDMIVGQKINEEAVARFLKAKE
                     KLLDVQKKNINKPYIYTDATLNLVYFNIVESFYSSLFEVEKLFKNTASSEDLIATVDK
                     AMENLQNSSNVNLDSFKSKITNSEELEKITLKERYISNAVDSYSEILKYLRSNADLLE
                     SNYIFSLLELQVWIDRINEAIGVSFVNIGKIVISALVLVFFISLRRFFANIVYFFLVQ
                     FFYRNKNDVDDIKVIFIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVY
                     AVLIAWLILRMLDGYGVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSDIEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVK
                     DLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYIKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AKK"
     gene            complement(4226..4861)
                     /locus_tag="ROE18_001399"
     CDS             complement(4226..4861)
                     /locus_tag="ROE18_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HDX3651570.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRIGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKVQ"
     gene            5022..5717
                     /locus_tag="ROE18_001400"
     CDS             5022..5717
                     /locus_tag="ROE18_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HDX3651571.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
BASE COUNT         2015 a          895 c          894 g         1957 t
ORIGIN      
        1 tataaaattc acaaaatatt tcactttaaa attttacttt agcattttat ttttgttata
       61 atttttaacc taatttttat aaatttttgt tattatccgt ttttaaataa agataaaaaa
      121 tatcctaatt aaaattaagg ataaattaag gattttaaag tgaaagtata tttagataac
      181 aacgcaacga caatgcttga tcctaatgct tatgagttga tgctaccttt tttaaaggat
      241 atgtatggaa atccaaatag ccttcatcaa tatggtagcg caacacatcc tgccttaaga
      301 gaagctttgg ataaacttta tgcaggactt ggagcaaatg acctagatga cataattgta
      361 acctcctgtg cgacagaaag cattaactgg gtgcttaagg gtgtgtattt tgattatatt
      421 ttagataaag aacgcaatga agtgattatt tctagtgtag aacaccctgc tgttactgct
      481 gctgcttatt ttttaaaaag tcttggagta aaagtcatag aacttcctgt aaatgaagaa
      541 ggagtttcta ctgtagaaga tttgcgtaaa gtgattagcg ataaaacagc acttgtaagt
      601 gttatgtggg caaataatga aacaggtatg atttttgata ttaaagcgat ggcagaactt
      661 gcgcatgaat ttggtgctct ttttcataca gatgctactc aagcagtagg taaaataaag
      721 gttaatttaa ctcaagtagg agttgatttt gcttcatttt cggcacataa atttcatgga
      781 ccaaagggtg tgggtggact ttttataaaa aaaggactta agcttactcc acttttacac
      841 ggtggagaac acatgggtgg tcgtagaagc gggactttaa atgtacctta tatagtggct
      901 atgggcgagg ctttgcgtat tgcaaatact atgcttgatt ttgaagattc tcatatacgc
      961 cgtttaagag ataaactaga agatcaaatt ttagccttgc ctgatacaac agtggttgga
     1021 aaaagagaac accgtgtgcc taatacaatc ttagcaagta ttaaaggagt tgaaggcgaa
     1081 gcaatgcttt gggatttaaa taaaaatggt atagctgcaa gtacgggctc agcctgtgca
     1141 agtgaagctt tagaaagcaa tcctattatg gaagctatcg gtgcggagca tgatttagcg
     1201 catacagctt taaggctttc tttgtcacgt tttaacactg aagaagaaat tgattatgca
     1261 gcaaaacaaa ttaaaaatgc aacacagaga ttaagagcaa tttcttgtac ttatgcttat
     1321 aatccaaata attacaaata aggatgaaaa atgggaaaaa atagtttaat tggtggatcc
     1381 atttgggatg agtattcaca aaaagttcaa gatagaatga ataatcctca acatatggga
     1441 gaatttagtg aagaagatgc taaagcacgc aatgcaaaat tgatcgtagc tgattttggc
     1501 gcagaaagtt gcggcgatgc ggtaagactt ttttggcttg tagatgaaaa aactgataaa
     1561 attatcgatg caaaatttaa aagttttggt tgtggtacag ctatagcaag tagtgatact
     1621 atggtggatc tttgtatagg aaaaactgta gatgaagcag taaaaatcac aaatttagat
     1681 gtggaatttg ctatgcgtga taatccagaa actccagctg ttccacctca aaaaatgcac
     1741 tgttcggtta tggcttatga tgtaatcaaa caagcagcag cgcattataa aggcataagt
     1801 cctgaagatt ttgaagatca aattatagtt tgcgagtgcg ctagggtaag tcttggaact
     1861 attaaagaag tgattaaact taatgatttg catagcgtag aagaaatcac acaatacact
     1921 aaagcgggtg ctttttgtaa atcctgtatc aaaccaggcg gacatgaaaa aagagattat
     1981 taccttgtag atattttagc tgaaactaga gctgaaatag atagagaaaa actcaaaaat
     2041 acaatgaaaa gtgatgtagc ttttgatgaa atgaccgtag tgggacaatt aaaagcagtt
     2101 gaaagtgttt tagatgctga aattcgccct atgcttcata atgatggtgg agatttggaa
     2161 gtgattgata tacaaaagac tgaaggtgca gcaattgatg tttatattcg ttatcttggt
     2221 gcttgtagtg gttgttctag tggaagtggt gcaacacttt atgctattga aacaatttta
     2281 caagaagaat taagtccaaa tatacgcgtt atgccggttt aaaaaaatag caagataaaa
     2341 tcttgctatt ttttagcttt tgcttgcaaa tcaaggggtg gtaaattttc tatataaata
     2401 ctacgacttg ggaaagcaaa ggttaaacca tttttttcaa ttatacgcat aaactcaagc
     2461 attaaacttt gtctagcttc tctaaaatct tttccaccta tttctttgat ataaaaataa
     2521 agctctatat taatactact atctgcaaat tcacttaaag ccacataaca agcattttta
     2581 tagccttcta aatcattaat agatacaaga ttttgacgat attttgttgt atgatcgcca
     2641 tattttaatg cactatcctc atcgtgagct actaaatcac ttgtatgcaa aaattctctt
     2701 agatctttta cacattgttc tagtttttca ggagtagcat cataaccaac acccaaatac
     2761 attctaacat ggcgacccat gcgtcttttg ctccaatttt tgatattagc tcccataata
     2821 gttgaatttg gtaaaaatac aagacaatta tcaaaagttc taatagtagt ttttctaagt
     2881 cctgtttcaa ccacggttcc ttctatgtct gaaacctcta cccaatctcc ttgattaaag
     2941 ctattatcaa aaagtaagag tatagaagca aagaaatttg caatgatatc tttcgccgct
     3001 aaagcaacag ctaaaccacc aattcccaaa gatgcaataa tagccgaaat attaaaacca
     3061 agttgagcaa gaatatataa taaagctata ataataatga caaaatataa aattttaata
     3121 attaaattta caacttcttt ttttccactt ttttgagcaa gtttagaaac caataccacg
     3181 ccataaccat caagcattct taaaataagc catgcaatta aaactgcata aactatatga
     3241 aaaaaattac ttaaatttac actcaaaggt gcaggataag ttgctatagt aagacaaaga
     3301 gaaatagcat agacaatcaa caagaagcct acgggttttt taatattctc aataaaaatg
     3361 actttaatat catctacatc atttttattt ctataaaaaa actgaacaag gaaaaaatat
     3421 actatatttg caaaaaaacg tcttaaagat ataaaaaata ctaaaaccaa agcagaaatt
     3481 actatttttc cgatattaac aaaacttacc ccaattgcct catttatacg atctatccaa
     3541 acttgaagct cgagtaatga aaaaatataa ttactttcaa gcaaatctgc atttgagcgt
     3601 aaatacttaa gaatttcaga ataagaatct acagcattac tgatatatct ttcttttagg
     3661 gtaatttttt ctaattcttc tgaatttgta attttgcttt taaaactatc taaattaaca
     3721 ttagaagaat tttgtaaatt ttccattgcc ttatcaacag tagcaatcaa atcttcactg
     3781 cttgctgtat ttttaaaaag tttttccact tcaaacaaag aagaataaaa actttccaca
     3841 atattaaaat aaactagatt aagagtggca tctgtataaa tataaggctt attaatattc
     3901 tttttttgaa catctagtaa tttttctttt gcttttaaaa atctagccac tgcctcttca
     3961 ttaatctttt gtcctactat catatcgggt atttttgcta aaatagtctt tttgtctttt
     4021 tcaaattcac ttaaaatacc attaaaagtg cttgaatttt catcattgtt tttcttaaat
     4081 tctttaattt gattgttaag atcaacatat ttttcaacta aagcataaat tccttcatcc
     4141 tctttactaa tattcgcatc aataaattta aattcttgtg ctccaaggta taaaataaaa
     4201 aaacataaac taaaaataat tttcttcatt gaactttcct atcctgtatt aaagtaaaaa
     4261 tttttgcttt aaaatcatac tcataaattt cacctgtctc tataatataa taccaagcat
     4321 gtacttctat ttttccttca tctaaagctt cttgcacgcc tggataagta agtatatttt
     4381 gcaaagaatt tactaaattt aatttttctg taagccatga acgcatagcc aaatcgtctc
     4441 ttgcaaaaat cattacatct ttttttatcg gatctaacat agtaagccat tttttcacat
     4501 taggaatttt atttaactct tcatcagaat aataaagagc attgcaacct ccacaattac
     4561 tatggccaca aacgacgata tttttaatat gcaatgaatt taaagcatac tctattgctg
     4621 aagttgtcgc taagtaatct tccccaatgc gataaggtgg aactatattt gcaatatttc
     4681 gtattacaaa aagctcacct ggacccgtat tggtgatcaa atttggaatt actctagaat
     4741 cagaacaacc tataaaaaga gtatggggat tttgcttatt ttttagactt tcaaaaagtt
     4801 cttcatgctc cttaaagtct tcttgcataa acttaatcgc accactaata agattttcca
     4861 taaaaccaac ctgaaactaa aatcttgaaa ttataacaaa atttcagcaa agatttcatt
     4921 taatcataaa gatattatat aaattaactt tttatttagt ctaatatgtt agatttcgct
     4981 caagatttta aaaaatctaa caattttgca aggagaattt tatgagtctt tatgatagag
     5041 actactcaag atcaaaagaa tttgaaaata cacgctcaag cgaattaagt atttttatta
     5101 aacaaactta tcaacttttt gctgcttcat tattagctgc aacagtaggt gcgtatgtag
     5161 gaatttttgc tttagcatca ttttttatac aatcacaagt aactttttgg atcctttttg
     5221 ctgttgaaat cggactttta tttgctttgc aatggaaaaa aagagaggct ccattaaatc
     5281 ttgttttact ttttggtttt actttctgtt caggtttaac tcttacacct ttgcttattt
     5341 cagttttagc tctaccagct ggaggaatta tcatcgctca agcttttgct ttaacaacgg
     5401 ttgcttttgc aggacttagc gtatttgcta tgaatacaaa aaaagatttt accgttatgg
     5461 gtaaagcttt atttatagta ttaatcgtta ttgtagcagc atctttacta aaccttttct
     5521 tccaaagcag tatagttaat ctagctattt cagcagtagc tgcaatatta ttttcatttt
     5581 acattcttta tgatacgcaa aatattatcc gcggaaatta tgaaactcca atcgaaggtg
     5641 cagtagcact ttatcttgat tttgttaatc ttttcgtatc tttacttaat atcttaagaa
     5701 gcttcaatag cagataaatt tttgtgggat ttttctcaca aaaacttttc aagtttcaaa
     5761 a
//
LOCUS       DAPOLW010000106         5593 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.106, whole genome shotgun sequence.
ACCESSION   DAPOLW010000106 DAPOLW010000000
VERSION     DAPOLW010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5593
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.106"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(9..617)
                     /gene="plsY"
                     /locus_tag="ROE18_001401"
     CDS             complement(9..617)
                     /gene="plsY"
                     /locus_tag="ROE18_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HDX3651572.1"
                     /translation="MENLIIYAFIYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNV
                     LRVVKEKNPKLAKKLAIATIILDFAKATIPLLTLKFLHYDQALLWSVAVLAILGHCFS
                     IYLLFEGGKGIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALLAFVVSS
                     FIFNYDLEIHTHAPVFIIAFIIVYKHLPNIKRLIFKEECKVI"
     gene            818..1843
                     /locus_tag="ROE18_001402"
     CDS             818..1843
                     /locus_tag="ROE18_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HDX3651573.1"
                     /translation="MKVKALLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGVSTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
     gene            1937..3274
                     /locus_tag="ROE18_001403"
     CDS             1937..3274
                     /locus_tag="ROE18_001403"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HDX3651574.1"
                     /translation="MRLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPVNLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLINLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEARDIKLLEKEMKNVVEFFKKALNG"
     gene            3267..3737
                     /locus_tag="ROE18_001404"
     CDS             3267..3737
                     /locus_tag="ROE18_001404"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HDX3651575.1"
                     /translation="MAKTFKFIFYFWGAFVLVFALDQWVKSLTLAGFRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIGVLFIYLFWQRTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            3721..4173
                     /gene="hemJ"
                     /locus_tag="ROE18_001405"
     CDS             3721..4173
                     /gene="hemJ"
                     /locus_tag="ROE18_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HDX3651576.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEVVKIQERKLYYYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSTKSGKYFRIYNEFPTIMFIIIALMMVVRPF"
     gene            complement(4170..5516)
                     /locus_tag="ROE18_001406"
     CDS             complement(4170..5516)
                     /locus_tag="ROE18_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HDX3651577.1"
                     /translation="MNLFQNLALKYSHTMMEKSLQKGFNVELLKQPEEKIPKQDKSYM
                     LYAHVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKNKGFDFTSMYVGGGTT
                     LIDEEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDET
                     LKKVARYNKFGSSKELQEKISKALGILPIFSIDLIFNLPGQNEKQLLNDLEIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVSIKDNEFTYYQIIREFFKDYTQNNGWSFSLEKNK
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKE
                     IIKYVFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATEFG
                     QYLFVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSASMEFKAETN"
BASE COUNT         1894 a          732 c          941 g         2026 t
ORIGIN      
        1 ttttattttt atatgacttt gcattcttct ttaaaaatca atcttttaat attaggtaga
       61 tgtttatata ctataataaa agcgataatg aaaacgggtg catgtgtatg aatttctaag
      121 tcataattaa atataaaaga acttacaaca aaagcaagta acgctgctaa agaagctaac
      181 gaagatattt taaaaatttt tcctataact acccatacaa taaatgctgt aagcacttcc
      241 aatggaagca aaactatcat agcacctgct cctgttgcta tgcctttccc tccttcaaat
      301 aacaagtaaa ttgaaaaaca gtgtcccaaa atagccaaaa ctgccacgct ccaaagcaaa
      361 gcttgatcat aatgaagaaa tttcaaggtt aataaaggaa tagttgcttt tgcaaaatct
      421 aaaattattg tagcaatggc aagttttttt gctagtttgg gatttttttc ttttactact
      481 cttaaaacat tggttgctcc tatacttttt gaaccttctt ttttgatatc agttttagca
      541 aaaaatttag ctaggattag cccaaaaggg attgaaccta aaagatatat aaaagcgtaa
      601 attattaaat tttccataat atccttttca aatcatctta aaattttaag atttataact
      661 aaaaattata tcttatgaaa ataaataaac aaaaataatt tttataggat aaaaatagta
      721 ttaattaatt gtaaatattt tttaataata tttatcttta tttaagctct aaataattat
      781 tattttattt taatttatct ttaataggag tttataaatg aaagtaaaag cattgctaat
      841 cgcatcctta gttgcttttt caagcttaaa tgctgcaagt cttatagatg aagctaaaaa
      901 ttcaggtctt gttgccttgc caaaagatca aaaaggtgtt gatgaaattt taaaacaaaa
      961 tggagtaaag gctagtgaat ttactcttga aaaagcagag cttggcaaaa agctttattt
     1021 tgaaccacgc ctttcaaaaa gtggtatcat ttcttgtaat acctgtcaca atgtaggact
     1081 tggtggaaca gatggggtta gtactgcaat aggtcataaa tggacagcaa atccccatca
     1141 tttaaattca ccaacagttt ataatgcggt tttaaataat actcaatttt gggatggtcg
     1201 tgcaggaaca ttagccgatc aagctaaagg tccaatccaa gctgatcctg aaatggcaac
     1261 tcctgctaaa ctcgcagtag aaaaaatttc atcattgcct gaatatgtga gtgagtttaa
     1321 aaaaatctat ggtaaaagtg gtgtaaattt tgacaatatt gctgatgcaa ttgcaaattt
     1381 tgaaagaacc ttgatcactc catctcgttt tgataaattt ttagaaggcg atgaaaaagc
     1441 tttaacaaaa gaagagcaaa aaggcttaaa gctttttata gacaagggtt gtgtagcttg
     1501 tcataatggt gtgaatttag gtggcaatat gcaagcgttt gaagttgctg gtaaatataa
     1561 atttgcaaat ttaggtgatt ttaaaggtga tgcaaatggc atggtaaaaa ctccaacttt
     1621 aagaaatgtt gctgaaactg ctccatattt tcataatggc gctatttgga atctaaaaga
     1681 tgctattaag gaaatgggta gtgtgcaact tggcattaaa atttctgata aagaagcaaa
     1741 aagtattgaa actttcttaa aatccttaac aggaacaaaa ccagcaattg tttatccaca
     1801 acttcctatt tctactgaaa aaactcctaa acctgaacta taaggttcca aacaagctct
     1861 atttttagag cttgtttaaa tttctttatc ttagctttgt tataattgtc tttaaatttt
     1921 gctagaaagg tttgcaatga gactttttgg aactgatgga gttcgtggaa aagcgggtga
     1981 atttttagat agttttttgg ctatgcgttt agcaatggct gcgggtattt attttaaaga
     2041 taaaagtatt actaataata tcttagtagg aaaagataca agaagaagtg gctatatgat
     2101 agaaaatgct attgtttcag ggcttacttc tataggatat aatgttatac aaattggtcc
     2161 tatgccaact cctgcgattg cattcttaac tgaagatatg cgttgtgacg cagggattat
     2221 gatttcagct tctcacaatc cttattatga taacggtatt aaattttttg atgctcatgg
     2281 aaataaactc agtgaagata tagagaaaaa aatagaagaa atttattttg atgataagct
     2341 tatacaagcc tctaaggtag atatggaaaa aattggtcaa gcaaaaagaa ttgatgatgt
     2401 tataggaaga tatattgttt ctattaaaaa ttcttttcca aaagatctta ctttaaagtc
     2461 tttgcgtgtt gttttagatg tggctcatgg ggcagcttat aaggtagcac ctactgtttt
     2521 taaggaatta ggcgctgaag ttatagtaat gagtgataaa cctaatggac ttaatatcaa
     2581 tgaaaattgt ggagctttgc atcctgtaaa cttagctgct gaggtaaagc gtttgcgtgc
     2641 agatgtgggc tttgcttttg atggtgatgc agatcgtttg gtggttgtag atgaaaaagg
     2701 cgaagtggct aatggggata gtttattggg tgtattggca ctttatctta aagaacaagg
     2761 taaattacaa tcaagtgttg tggctactat aatgagtaat ggtgctttaa aagagttttt
     2821 aaataaacat ggtatagaac ttgatacttg taatgttggc gataaatatg tgcttgaaaa
     2881 actaaaagcc aatggtggaa attttggtgg agaacaaagt gggcatatta tttttagcga
     2941 ttatgcaaaa actggagatg gtttgatagc tgccttgcaa tttagtgctt taatgctttc
     3001 taagaaaaaa tctgcaagtt ctattttggg tcaagttaaa ccttatcctc agcttttaat
     3061 caatcttaaa attgcagaaa aaaaagattt agataaaatt aaaggtttaa aagaattaaa
     3121 aaaagattta gaaaataaaa atattaatac cttatttcgc tattctggaa cagaaaattt
     3181 gataagactt ttactagaag ccagagatat taagctctta gaaaaagaaa tgaaaaatgt
     3241 tgtggagttt tttaagaaag ctttaaatgg ctaaaacttt taaatttatt ttttattttt
     3301 ggggtgcctt tgttttggtt tttgcccttg atcaatgggt aaaatcctta actttagcag
     3361 gatttagatg gcagagtgaa tacctagatt taacttatgc tctaaataca ggcgtagctt
     3421 tttcaatgtt gagtttttta gaacataatt taaaatattt acatcttgct ttaattggcg
     3481 tgctttttat ttatcttttt tggcaaagaa cacttttaaa aactcatagc atagcttttg
     3541 gaatgatgct tggtgccggc gtttcaaatt tattggatcg ttttatacat ggaggtgtag
     3601 tggatatgtt tttttggcat aaatggttta attttgctat ttttaatgtt gcagatgtca
     3661 tgataaatat aagtgtggct ttgattttaa tacaagaaat atttaaaaaa aggaaaaaag
     3721 atgacagaat ggattaatga ttattatttt tggattaaat gggtgcatta tttggcattt
     3781 gtttcttgga tggcgggtct tttttattta cctcgtcttt ttgtgtatca tgctgaacat
     3841 aaagacaata aaggttttgt cgaggttgta aaaattcaag aaagaaagct ttattattat
     3901 atacaaactc ctgcaatgat tgtgacttta atcacaggaa gtttaatgtt gcatgctcat
     3961 aaggaagttt taatggtagg tgcgggtttt atgcatgtta aacttacctg tgttacactt
     4021 ttgattattt ttcatataca taattattat tgtttaaaag ctttagcaaa tgatacttct
     4081 actaaaagtg gaaaatattt tagaatttat aatgaatttc caactataat gtttattatc
     4141 atcgctttaa tgatggttgt tcgtcccttt tagtttgtct ccgctttaaa ttccatacta
     4201 gcggagttaa gcggatcaat attttctttc atgatatcga tataatcttt atttttaaga
     4261 cgcttatcat ctctaaatac tgcgcgcaca agatccattc ctgtgtaaaa atctttcatt
     4321 aaaaccacaa aaagatattg accaaattca gttgcgatta aagcattttg atcttttatg
     4381 atggcaccac ttgttttaag tcctaaaagt tctatgaaaa gttctttttc gagattgcaa
     4441 tttagagttt tattaaattt atcaatttct attttccctg aaaaaatttc agttaaaaag
     4501 acatatttga taatttcttt tttatcaaaa caagctttgg ctatattagc attttgtttt
     4561 tcttgtataa atttagcata atcatttaga ttaaatgcat tgattaaaag ctccccatct
     4621 aaaaagctaa aagccccgct gcctactcct aggtattcat gatgagaact gacatattcg
     4681 tcattaagct tgtttttttc taaagaaaaa ctccaaccat tgttttgggt atagtcttta
     4741 aaaaattctc gtatgatttg ataataagta aattcattat ctttaatgct cactcctaga
     4801 cttttagcga tattatcttt ggtaagattt gatttcatta aaggataggt tgtgatttgt
     4861 tgcggggcta aatttttagc aatttctaag tcatttaaaa gttgtttttc gttttgtcct
     4921 ggaagattga aaataagatc tatactaaaa ataggtaaaa ttcctaaagc ttttgaaatt
     4981 ttttcttgaa gttctttaga tgaaccaaat ttattatatc ttgccacttt tttcaaagtt
     5041 tcatcatcaa aactttgaat cccgcaactt aaacgatcaa ttataccttt aaacatagaa
     5101 agcttatttg gatcaatatg atttggatcg ctttcgcatg aaatttcttt tatattaaat
     5161 aactttttac aaagttctaa ggtttttaat aattcctctt catcaatcag tgttgtacca
     5221 ccacccacat acatggaggt aaaatcaaaa cctttatttt tcatgatttt aatttcttct
     5281 ctaagatttt gaaaatatac tttggctaaa ttttcatcat aataatattt atgaaagcta
     5341 caataaggac aaaaagtatg gcaaaaaggt acatgggcat aaagcatata gcttttgtct
     5401 tgttttggaa ttttttcttc gggttgtttt aaaagttcga cattgaaacc tttttggagg
     5461 gatttttcca tcatagtatg agagtatttt aaagctaaat tttgaaataa attcataagt
     5521 ggcctatata ttaaaatatt taagacataa ctttatcaat ttttagctaa aataggagta
     5581 aattttttat ttc
//
LOCUS       DAPOLW010000107         5492 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.107, whole genome shotgun sequence.
ACCESSION   DAPOLW010000107 DAPOLW010000000
VERSION     DAPOLW010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5492)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5492)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5492
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.107"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            26..1045
                     /locus_tag="ROE18_001407"
     CDS             26..1045
                     /locus_tag="ROE18_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651578.1"
                     /translation="MNLKIFSIIVGILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNSYSPSIQTNNSSSDININNNTIQKQETNLLDENQSLNNNTFNTSISE
                     NNQSLNNNTNTSNNINTNENKQILDTDKEKLKQENKQAKIEALKKEISKQQKILERER
                     AVKKELQSNKSNKNKYLNTAREYLSIGKNSRLEPELSTENMKVYILDGKFLSQYRINL
                     LKDMLSVIQDNAKDYYLSIFVKMLPKGEMKLTIYNKEIIFSDMKKAYKYISLDRLSPY
                     LNNPKELNEHVAREEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEIIE
                     ISSIK"
     gene            1068..3680
                     /locus_tag="ROE18_001408"
     CDS             1068..3680
                     /locus_tag="ROE18_001408"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HDX3651579.1"
                     /translation="MYDKNLEKEYYQICEERGYFEIDGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREKFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLVNAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYTKFVDKEVILPISKKAIKIIADKHVEKDFGTGVVKVTPAHDM
                     NDYEVGLRHNLDFISVFDEKGILNEHCLEFQGLERLEARERIVAKLKSLGFIEKIEEH
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSEKDLKDFYPNSLLITGFDILFFWVARMMFQSTNALHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNATNYLLLNESKFEDLENITLHSELAKYIYAKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVSIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIKDEIKAYMNFIIMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKISVELQNLRG"
     gene            3685..4695
                     /locus_tag="ROE18_001409"
     CDS             3685..4695
                     /locus_tag="ROE18_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HDX3651580.1"
                     /translation="MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLENYQEGSLKVFDQEIKDLSQKKSKELRMLRKDIGMIFQNFALMERKNVFENV
                     AMPLRTHYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQ
                     RVAIARALALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVK
                     DIAQKALLLEHGQIIGSGAIDELFLRPNAKMKEFLGESDFLPEHGLNIKLYFPKEVAQ
                     NSVITHMARTLNIDFNIVWGKIEKLNGKALGNLVININEKDKDKVLDYIEKSGVLWEV
                     AS"
     gene            4692..>5492
                     /locus_tag="ROE18_001410"
     CDS             4692..>5492
                     /locus_tag="ROE18_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDX3651581.1"
                     /translation="MNEENISIISAFFSRISQFFNEFSWQDIKEVSLSSITSFSENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLIL"
BASE COUNT         2154 a          757 c          921 g         1660 t
ORIGIN      
        1 actttctgtt tttaagggat agcaaatgaa tttgaaaatt ttttctatta ttgttggcat
       61 attaattgct gttattgtga tattaggtgg aacatattat tatctttttg aatattcaaa
      121 accaaagaat tacaccttaa ataccaacac ttacaccgaa caaaaatcat ataccaataa
      181 ctacgataat tcctattcac cctcgatcca aaccaacaat agttcatcag atataaatat
      241 taataacaat accatccaaa agcaagaaac aaacctatta gatgaaaatc aaagcttaaa
      301 taacaataca tttaatacat caataagcga aaacaatcaa agcttaaata ataacaccaa
      361 tacaagtaat aatattaata caaatgaaaa taagcaaatt ttagatacgg ataaagaaaa
      421 attaaaacaa gaaaataaac aagccaaaat agaagctctt aaaaaagaaa tcagcaaaca
      481 acaaaagatc ttagaaagag aaagagctgt aaaaaaagaa cttcaatcaa acaaatcaaa
      541 caaaaataaa tatctaaata ccgctagaga gtatctaagc ataggaaaaa acagtcgttt
      601 agaacctgag cttagcacag aaaatatgaa agtttacatt ttagatggaa aatttttaag
      661 ccaatacaga atcaatctgt taaaagatat gctaagcgtt atacaagata atgcaaaaga
      721 ttattatcta agtatttttg ttaaaatgct accaaaaggg gaaatgaaat taactatcta
      781 taacaaagaa attatctttt cagatatgaa aaaagcttat aaatatatta gtttagatag
      841 attaagccca tatttaaaca atccaaaaga attaaatgaa catgtagcac gtgaagaaat
      901 tttagaaaga cttaaacttc aaattaaaaa agacggcaaa ggaagtgatt tttctaaaca
      961 tatcaaaagt ttgaaaactg gacttaatac agcacaatat ttcttcccgt tttgtgaaat
     1021 tatagaaatt agctctatta aataagctaa aacaataaag gcaaataatg tatgataaaa
     1081 atttagaaaa agagtattat caaatttgcg aagaacgcgg atattttgaa atcgatggca
     1141 ataaaaccat acaagaaaaa gataaaaatt tctgcattat gatgcctcct cctaatgtca
     1201 ctggagtttt acacatagga catgctttaa cttttactct gcaagatatt atgacgcgtt
     1261 acaaaagaat ggatggctat aaggttcttt atcaaccagg gcttgatcac gcaggtattg
     1321 ccactcaaaa tgttgtagaa aaacaactcc ttgctcaagg cattaaaaaa gaagaactag
     1381 gtagagagaa atttatagaa aaagtctggg agtggaaaga gcaaagcggt ggaaaaattt
     1441 tagaccaaat gagaacacta ggcatcactc ctgcatggag tcgcttgcgt tttactatgg
     1501 atgaaggttt ggttaatgcc gtaaaaaaag cctttgtaga actttatgat aaaagactta
     1561 ttgtacgtgg aaactacatg ataaattggt gtacccatga tggcgcttta agtgatatag
     1621 aagttgaata caaagaaaac aaaggaaaac tttatcatat taaatacttt ttaaaagata
     1681 gcgatgaatt tttagtagta gccacaacgc gtcctgaaac tttttttggc gatactgcag
     1741 ttatggtgca tcctgatgat gaacgctata ctaaatttgt ggacaaagaa gtgattttgc
     1801 ctataagcaa aaaagccatt aaaatcatag ccgataaaca tgtagaaaaa gattttggaa
     1861 caggagttgt aaaagttact cccgctcatg acatgaacga ttatgaagta ggacttagac
     1921 ataatttaga ttttataagt gtttttgatg aaaaaggaat tttaaacgag cattgtttag
     1981 agtttcaagg tttagaacgc ttagaagcaa gagaaagaat cgtagccaaa cttaaaagtc
     2041 ttggttttat agaaaaaata gaagagcata acaatcaaat aggatattgt tatcgttgca
     2101 acaatatagt tgaaccttat atctccaaac aatggtttgt aaaaaaagaa atcgcccaag
     2161 aaagtataga aaaagttgcg cttggagaaa gcaaatttta cccaaatcac tggataaata
     2221 gctttaatgc ttggatgaaa gatttaagag attggtgtat ttcaagacaa ctttggtggg
     2281 ggcatcaaat tcctgtgtat tattgcgaat gctctcatga atgggcaagc caacatacgc
     2341 ctaaaacttg tccaaaatgt caaagtcaaa atttcaaaca agatgaagat gtacttgata
     2401 cttggttttc ttcaggactt tgggctatga gtactctagg ctggggaaat gaaaattggg
     2461 gtaaagataa aatttggtct gaaaaggatt taaaagattt ttaccctaat tctttactca
     2521 ttacaggttt tgatatttta tttttctggg tggctagaat gatgtttcaa agcactaatg
     2581 ccttacatca acttcctttt aaagatattt atttacatgc tcttgtgaaa gatgagcaag
     2641 gtagaaaaat gagtaaaagc cttggaaatg tcatcgatcc aaatgaaagc attaaagaat
     2701 atagtgctga tattttacgc tttactttag cacttcttgc tatacaagga cgcgatatta
     2761 aacttagcaa tgataaactt ttacaagtta gaaattttac aaataaaatt tataatgcta
     2821 caaattatct gcttttaaat gaaagtaaat ttgaagattt ggaaaatatc acacttcatt
     2881 cagaattagc aaaatatatt tatgccaaat ttcaaacttg tgttaaggat gtaagagaaa
     2941 atttagacaa ttatcgcttt aatgatgcag ccaatactct atataaattc ttttgggatg
     3001 atttttgcga ttggggtata gagcttagca aagccgaaaa atcgagcgtt aaagaacttg
     3061 gtagtatttt caaagaagct ttaaaacttt taaatccttt catgcctttt atcagcgagt
     3121 atttatacca caaactaagc gatacagaac ttaaaacaag cccttctatt atgataagca
     3181 aatatccaaa atttaaagaa caagataaaa atatagaaaa aatcttttct ttgctcatag
     3241 aaagcatagt tagtatccgc cgtgctaaaa gtttaatcga tcttggaaat tctaaaatag
     3301 aaaaagctta tatcaaattt aacgataaaa aaatcaaaga tgaaatcaaa gcttatatga
     3361 attttatcat aatgctcgca aagtgcgagc aaatagaatt tagtgaagaa aaattaccaa
     3421 aggcaatatg tgatgttagc gagaatttag aaatttttat tacgcttgaa aatgttgatt
     3481 taagtggtat tttaacaaga cttgaaaatc aaaaaaataa gcttgaaaaa gaaagtttca
     3541 agcttaactc catgctttca aatgaaaaat tcatcgctaa cgcacctaaa gaggtggtgg
     3601 agcaaaataa agaagctcta gaaaatttaa aaattcaact tgaaaaaata tcagttgaac
     3661 ttcaaaatct aagaggttaa aaatttgata aaaataaaaa atttaaaaaa atattatggc
     3721 aaggaactcg tgataaacga tgtttctttg gagattaaaa agggtgaaat ttacgccata
     3781 gtaggtcata gtggagctgg aaaatccact cttttaagat gtattaatgg acttgagaat
     3841 tatcaagaag gaagtttaaa agtctttgat caagaaatta aagatttaag tcaaaaaaaa
     3901 tcaaaagagt taagaatgct tagaaaagat atagggatga tttttcaaaa ttttgcccta
     3961 atggagcgca aaaatgtatt tgaaaatgtt gctatgcctt taagaacaca ctatactcag
     4021 tgtaaatttc atgccaagct ttttaataaa gaatacatga gcgaaaaaga aattgcccaa
     4081 aaagtcaatt ccttacttga aatcgtaggg cttgatcata aaaacaaatc ctacccaaga
     4141 gaactgagcg gagggcaaaa acaacgcgtt gctattgcta gagccttagc tttaaaccca
     4201 aaaattttac ttagtgacga agctacttcg gctcttgatc caaacactac aaaaaatatt
     4261 ttagagctta tatctaaaat caatgctgaa tttgggatta ctgttgtttt agtaactcac
     4321 gaaatggatg tggtaaaaga catagctcaa aaagctttat tacttgaaca tggacaaatc
     4381 ataggaagtg gagcaattga tgagcttttt ttaaggccta atgccaaaat gaaagaattt
     4441 ttaggagaaa gcgacttctt gcctgagcac ggacttaata tcaaacttta ctttccaaaa
     4501 gaagttgccc aaaatagcgt catcactcat atggcaagaa ctctaaatat agactttaac
     4561 atagtttggg gtaaaataga aaaactgaat ggaaaagcct tgggaaattt agttataaat
     4621 ataaatgaaa aggataaaga caaggttctt gattacatag aaaaaagtgg agtattatgg
     4681 gaggtggcat catgaatgaa gaaaacatct ctatcatcag tgcttttttt agtagaattt
     4741 ctcaattttt taatgaattt tcttggcagg atattaaaga agtgagttta agttctatta
     4801 caagtttcag tgaaaattat gaaaacattt taaaacctgc gcttaatgaa acaatttata
     4861 tgagtttaat ggctgtacta tttggatttt tattggctat cattcctgga attttacttg
     4921 ctatttggga taaaaatgga attaaagaaa ataaaatcgc ttatagtatt ttagatttta
     4981 ttaccaatat attacgcgcc tttccatttt taattcttat agttgttctt ttaccacttt
     5041 ctaaaatcat agtaggcaca agcataggta caaatgctgc catagttcct ttagctatcg
     5101 gaatagctcc ttatttggca aagatgcttg aaagcgcttt taaagaaata gacaaaggaa
     5161 ttatagaagc agcaaaaagt tatggtgcta gcaatattca aattatcttc aaggttatct
     5221 ttagtgaagc ccttcctgct ataattagcg gaattaccct aactttgatc tttaccattg
     5281 gtttttctgc tcttgctgga actgtcggtg gtggaggatt aggagatgta gctattcgct
     5341 atggttatga aagatttaac aaagaagtta tgattcaaac tgtagttatt ttacttatat
     5401 tagttcaatt agttcaaatt ctaggtaatt tattttatac ttgggctaaa aatagtaaaa
     5461 ctacatatat cattgccact ctattgattt ta
//
LOCUS       DAPOLW010000108         5228 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.108, whole genome shotgun sequence.
ACCESSION   DAPOLW010000108 DAPOLW010000000
VERSION     DAPOLW010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5228)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5228)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5228
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.108"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(207..338)
                     /locus_tag="ROE18_001411"
                     /pseudo
     CDS             complement(207..338)
                     /locus_tag="ROE18_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857339.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
     gene            complement(314..868)
                     /locus_tag="ROE18_001412"
     CDS             complement(314..868)
                     /locus_tag="ROE18_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HDX3651582.1"
                     /translation="MILFSEDMIENLCTNKIKLFSDIKDYTERKKLIEKEVLFINIPF
                     EAHCINTLYYLIYDGLSQSESSLLELLYKHNPYPCALVGGGSSGNMDFSGAFIFYNGE
                     ILKNQALSIHVQFKPKYRFNLMKSQNFNPQSNITFTILDVSLYDKTVRELINKKPFRL
                     KLYVIILTALLKNLKIKCKNILLL"
     gene            1350..2207
                     /gene="cheP"
                     /locus_tag="ROE18_001413"
     CDS             1350..2207
                     /gene="cheP"
                     /locus_tag="ROE18_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HDX3651583.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE
                     IISSDPLMTAKLLQLANSPYYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKID
                     VSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REKVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLKEAKTQGINFDLNNLLSKLPNK
                     AKENLNKKD"
     gene            2235..2714
                     /gene="cheQ"
                     /locus_tag="ROE18_001414"
     CDS             2235..2714
                     /gene="cheQ"
                     /locus_tag="ROE18_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HDX3651584.1"
                     /translation="MMKSLILPPNEFLDHYILNAEFHRFAGISKNAYKFWKNAEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(2683..3993)
                     /locus_tag="ROE18_001415"
     CDS             complement(2683..3993)
                     /locus_tag="ROE18_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDX3651585.1"
                     /translation="MSKTLNQKDIKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPK
                     DLSSFWQMFNTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAF
                     IPNYESIGFLCIVLLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVV
                     GGILLGSLVFLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMK
                     KDKALEKFPLKEVFKKAKMGIVLSMMITWVLTGCIVVMILLMPSYMAKILQINTSIQT
                     YLQIGGILLICLGCIISGILADKIGVIKSCVFFSVFFGIASLLYFNTLYRQNADFNLV
                     ACLYLLVCFFSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHS
                     FALNNLSNFWRFSLGLYVFFLAIIALLCAFIFSYLNNTQRTYSQ"
     gene            complement(3996..4151)
                     /locus_tag="ROE18_001416"
     CDS             complement(3996..4151)
                     /locus_tag="ROE18_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HDX3651586.1"
                     /translation="MAYEDEEDLNYDDYENEDEEYPQNHHKNYNYDDDDYEYDDDNND
                     DDFYEMD"
     gene            4244..4717
                     /gene="moaC"
                     /locus_tag="ROE18_001417"
     CDS             4244..4717
                     /gene="moaC"
                     /locus_tag="ROE18_001417"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HDX3651587.1"
                     /translation="MKLSHLDEKNHPKMVDVSDKNITLRIATASGIIYMSQEAFDVIK
                     NNTAKKGPVLQTAIVAAIMGVKKTSEIIPMCHPLMLSKVETNIVEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRITDIVLESKEGGKSGKFVRS"
     gene            4695..4958
                     /locus_tag="ROE18_001418"
     CDS             4695..4958
                     /locus_tag="ROE18_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 domain-containing protein"
                     /protein_id="HDX3651588.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHVKASEIFEEILGQREY
                     KFKHSNSSASGKYQSYLLNVYVDSKKDRLDIFDKLKAKAKFVL"
     gene            4948..>5228
                     /locus_tag="ROE18_001419"
     CDS             4948..>5228
                     /locus_tag="ROE18_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651589.1"
                     /translation="MYFKKEGKMKNTLIIFENSLSNLGKDEASDLLEDLSFNLAYKQI
                     SHNPHETKKVLNSLLVEFLTILKKLDFFDDENVTKVIKALVKASIVDAQ"
BASE COUNT         1911 a          719 c          746 g         1852 t
ORIGIN      
        1 actaaacttt ttgcaattcc cactccataa atttctccaa aactagaaaa accaactata
       61 ggaaaatcat taaaatggat ttgatttaaa tgttctttgt tgtgaagcct tcttaagata
      121 caatcgttaa aaattgctcc tagtggtttt ggtttattaa gagaaaattt ttcataatct
      181 ttttttatag cttcaataaa atttgttttt ttaagcaagc ttaattcctg agcgctttct
      241 atatcacaat aactaaataa tgttttattt gggttgattt ccatagggga aataagatag
      301 tcttctccaa tttttaaagc aaaagtatat tcttgcattt tatttttaag ttcttcaaaa
      361 gtgcagttaa aataattaca taaagcttca accggaaagg ttttttatta atcaattcgc
      421 gtacggtttt atcatataag cttacatcaa gtatggtaaa ggtgatattg ctttgaggat
      481 taaaattttg agacttcatt aaattaaaac ggtatttagg tttaaattga acatgtatgc
      541 ttaaagcttg attttttaat atttctccat tataaaatat aaatgctccg ctaaagtcca
      601 tgtttccgct agacccaccc cctactaaag cacaaggata ggggttgtgt ttgtacaaaa
      661 gttctaaaag agaactttcg ctttgactta aaccatcata aattaaataa tacaaagtat
      721 ttatgcagtg tgcttcaaaa ggtatattta taaataaaac ttctttttct atcagttttt
      781 ttctttctgt ataatctttt atatcactaa aaagcttgat tttatttgtg caaagatttt
      841 ctatcatatc ttcactaaaa agtatcaagc ttattccttg gatattttgt ttataaggac
      901 tgttttcaat gtttgagtta gaatcaaggt tgcataataa atcagtagca ctgcttaaga
      961 tgatatcaca ttgctcattt atagaatttt gaatcttatt tcctatgatc gctagattaa
     1021 gttgattgac acaaagccta taattaattt tggcttgatg tttatttttt ttaatttttc
     1081 ttcaagttca ttttattgaa gatatagagc ttctaaaact tttttacttc ttcttttttt
     1141 gttgagcttt tatttttaaa attaaaaaaa catcaatttt actccattaa aactattttt
     1201 taattactag ttaactaaat caagacacca taaattcgac atttatttgt aatttttatt
     1261 ataccttaag tcataaaaaa tgcaataagt aaattaaaat ttagatataa ttgcaaatta
     1321 taataatatt aattaaggat aaattaaata tgattggaga tatgaatgag cttttattaa
     1381 aaagcgttga agtattgcca cctttacctg atactgtaag taagttaaga aaatatgtga
     1441 gcgaggctaa ttcaaatata gaaactatga aagttgctga aatcatttca agcgatccgt
     1501 tgatgacggc taagcttttg caattagcaa attctcctta ttatggtttt acaagagaaa
     1561 ttacaaccat aaatcaagtg attactttat taggcgttgg taatatcatc aatatagtta
     1621 tggctgactc cattagagat aattttaaaa tagacgtttc accttatggt ttaaatactc
     1681 aaaatttttt aaaaacgtgc aatgaagagg caacttttat cgcaaattgg cttaatgatg
     1741 aagataaaaa actttctcat cttttagttc cttgtgcaat gcttttaagg cttggtattg
     1801 ttattttttc aaattttctt atacaaaatc ataaggataa ggatttttta gcttttttaa
     1861 ataaaaatga aaatcttgct ttagcggaga atgaattttt aggcgtagat catatttctt
     1921 tcttgggatt tttgttacat cgttggaatt ttgatgatgt tttgattgaa agtatatgtt
     1981 ttgttcgcac tcctcatgct gctcgcgaaa aagtgaaaaa atccgcttat gctttagcaa
     2041 taacagatca tctttttgct ccgcatgatg gttcttctcc atttaacgca aaagctgcag
     2101 ttgctttact taaagaggca aaaactcaag gaattaattt tgatttaaac aatcttttat
     2161 ctaagcttcc taacaaagct aaggaaaatt taaacaaaaa agattaaaga gcctttttaa
     2221 ggctctaaat tgtagtgatg aaaagtttaa tcttacctcc taatgaattt ttagatcact
     2281 atattttaaa cgctgaattt catcgttttg ctggaatttc aaaaaatgct tataaatttt
     2341 ggaaaaatgc agaaataggt agatatcaag gaacaagaat tatatttttg catagaaatt
     2401 gcattttaga aaaacatcag caagctttaa ggcaatgtag tggtttaaat ggttttgtat
     2461 tggcaagtgc tttttgttct tttactggat tagctccctc tcatttagtg gaaaaaaata
     2521 attcttctat ttataaactt ttagagctta aggaaatttg tgggattaaa tttgttaatt
     2581 taaaaaaatt ttatgatttt ttagggctaa attatcatca gcatatttat atagaaaaat
     2641 gccatttttt tagcccagct ccttttgaaa agcgtattaa aatcactgag agtatgtgcg
     2701 ttgggtatta ttaagataag aaaaaataaa tgcacatagc aaagctataa tagccaaaaa
     2761 gaaaacataa agtcccaaag aaaaacgcca aaaattactt aaattattta aggcaaaact
     2821 atgcaagaaa aaagcaagtt gcggagttaa acctccagct atagcataag caatattata
     2881 tgaaaaagaa agtcctgaaa atttaatttt tgcatcaaat acttcactca ttattaaagg
     2941 gcaaaaattc atcactccgc taaaaaaaca tacaagtaaa tataagcaag ctactaggtt
     3001 aaaatcagca ttttgtctat ataaagtatt aaaataaagc aagcttgcaa ttccaaaaaa
     3061 aacactaaaa aatacacaag atttaataac gcctatttta tccgctaaaa ttccacttat
     3121 aatacaccct aggcaaataa gcaaaattcc acctatttga agataggttt gtatagaagt
     3181 attaatttga agtatttttg ccatataact aggcataagc aaaatcatta caacaataca
     3241 acctgtcaaa acccaagtaa tcatcataga aagaacaatt cccattttag cttttttaaa
     3301 cacttctttt aaaggaaatt tttctaaagc cttgtctttt ttcatttgtt caaaaacagg
     3361 agtttctctt aaaaattttc tcaaataagc agaaataatc ccaaaaattc cacctaaaaa
     3421 gaatggaatt ctccaagccc attcatgaag ttcttcttgg gtataaattt tattcataat
     3481 taaaaaaacc aaactaccta ataaaattcc acctacaacc gaagcggtta aaattcccaa
     3541 ataagttctt ttttgacctt gtggtgcgtg ttcgtataca aaaacccaag ctccagggag
     3601 ttccccgcct atagctatac cttgacaaat gcgtataaaa actaaaagca caatacaaag
     3661 aaaacctata ctttcataat ttggaataaa agctagagta aaagttggaa taaccattaa
     3721 caaaatacta atcataaaca ttcttttgcg tccaaattta tctccaaaat gtgccagtat
     3781 cacaccccct aaaggacgtg ctaaatatcc agctgcaaat attccataag tattaaacat
     3841 ttgccaaaaa ctacttaaat cttttggaaa aaagtttgtt gaaatataat ttgcaaaaaa
     3901 tacaaaaata ataaaatcat aaaattctaa agttccacct aatgatgaaa gtcctaaaac
     3961 ttttatatct ttttggttaa gggttttgct cattcttaat ccatctcata aaaatcatca
     4021 tcattgttat catcatcgta ttcataatca tcatcatcgt aattataatt tttatggtga
     4081 ttttgtggat attcttcatc ttcgttttca taatcatcgt aatttaaatc ttcttcatct
     4141 tcataagcca ttgttttctc cttaaataaa aatacaaagc ttattttatc ttaaatttgt
     4201 ttggttttgc tataattttt ataatttttt aaaaggtgaa tttatgaaat taagtcattt
     4261 agatgaaaaa aatcatccta aaatggtaga tgtaagcgat aaaaatatta ctttaagaat
     4321 agccacagct agtggtataa tatatatgag tcaagaagct tttgatgtaa ttaaaaacaa
     4381 taccgcaaaa aaaggtcctg ttcttcaaac agctattgtt gcggctataa tgggggttaa
     4441 aaaaacaagt gaaattattc ctatgtgcca tcctttgatg ctttctaaag ttgaaactaa
     4501 tattgtggaa tttgttaaag aatgtgcatt taagcttatt gtaacagtta agtgtgaagg
     4561 taaaacaggt gttgaaatgg aagctttaag tggagttagt ataggacttt taactatata
     4621 tgatatgatc aaggctatag ataaatcaat gagaattacg gatatagtgc ttgaaagcaa
     4681 agaaggaggt aaaagtggta aatttgtgcg atcttaaaaa agaacctcag atcaattatc
     4741 ctactttttg ggattataag gtgatttttg aggtgcatgt taaggcaagt gaaatttttg
     4801 aagaaatttt aggtcaaaga gaatataaat ttaaacattc gaattcaagt gcgagtggaa
     4861 aatatcaaag ttatttgtta aatgtttatg ttgatagcaa aaaagatcgt ttggatatat
     4921 ttgataaatt aaaagctaaa gcaaaatttg tactttaaga aagaaggaaa aatgaaaaat
     4981 actttaatta tttttgaaaa ttctttatca aatctcggta aagatgaagc aagtgattta
     5041 cttgaagact tgagttttaa tcttgcgtat aagcaaattt cacataatcc tcatgaaaca
     5101 aaaaaagttt taaattctct tttggttgaa tttttaacta ttttgaaaaa acttgatttt
     5161 tttgatgatg aaaatgttac aaaggttatc aaagctttgg ttaaggcgag tattgtagat
     5221 gctcaaaa
//
LOCUS       DAPOLW010000109         5216 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.109, whole genome shotgun sequence.
ACCESSION   DAPOLW010000109 DAPOLW010000000
VERSION     DAPOLW010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5216)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5216)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5216
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.109"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..462)
                     /locus_tag="ROE18_001420"
     CDS             complement(<1..462)
                     /locus_tag="ROE18_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDX3651590.1"
                     /translation="MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIF
                     NFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINI
                     PIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRS"
     gene            complement(527..976)
                     /locus_tag="ROE18_001421"
     CDS             complement(527..976)
                     /locus_tag="ROE18_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HDX3651591.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAY
                     EEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYL
                     LAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM"
     gene            complement(1106..2326)
                     /locus_tag="ROE18_001422"
     CDS             complement(1106..2326)
                     /locus_tag="ROE18_001422"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HDX3651592.1"
                     /translation="MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNL
                     IDESLQFIQDKEYVKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKLILKNILNS"
     gene            complement(2320..3144)
                     /gene="galU"
                     /locus_tag="ROE18_001423"
     CDS             complement(2320..3144)
                     /gene="galU"
                     /locus_tag="ROE18_001423"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HDX3651593.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGRPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVISGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEIQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            complement(3226..5199)
                     /gene="acs"
                     /locus_tag="ROE18_001424"
     CDS             complement(3226..5199)
                     /gene="acs"
                     /locus_tag="ROE18_001424"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HDX3651594.1"
                     /translation="MLNQNNQELFKPSKEFSRNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQAFEKIEWFSPFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     MGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYTSPTAIRMLHADAPNEPRKYDLSTLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDTIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPGLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSKVVETIVKLAKAEFE"
BASE COUNT         1676 a         1012 c          675 g         1853 t
ORIGIN      
        1 actgcgtcca ctttgcaaaa aaagacctac taaattattt ataggtaaat ttttcttact
       61 tacactaata aattcttcaa aatcaaaata atcaagttca agctcttcaa acccatttac
      121 atttaaatct tttatatttg tacttaagat gatgggaatg ttaatttttt ctaaattagg
      181 gataaaatcc aaattataaa ggcaaagaat tttaatttgt aaattttcat tcagaaaatc
      241 agcaagtctt tctaaacttt gtttttcaaa gcgtgtatca tataaatcta aaaacaaaat
      301 ttcacttgct ttaaattgag ataaaaaatt aaaaataagt gtttttttac cacaaaatcg
      361 tgggcctttt atgataatat ttggttttga aatttgattt tttctttcat aacttacttc
      421 aaatttaggg tggttttcat aaaaaaaatt aagtactttc aattttatcc tttaaaaaag
      481 gatattataa cctagtttgt ataattgggg cataaagccc cttaaattac attttgcaag
      541 caccttgtaa agtagcgcct atcatccaaa gacttttttc atattttgcg atattttctt
      601 gtgcaaaagc agctgttgta gtatcacttt ctttttctgc tgcttcattg agttttttaa
      661 attctgctaa aagatattca taatcttgtt tgatcagttc tatgacttca agcggagtaa
      721 agcaatcttt tgcaactttt ggactttttg cattttccat taaaactttt tggcaagtga
      781 tagctttttc gccaagttgt aaaactcttt cagcacaact atcaaaaagt tctgccattt
      841 cttcataagc tttttctgtg tactcgtgta tagaaaaaaa ttgcaaacct tttacattcc
      901 agtgataatt atgaaattta acccataaat gatgagcatc tgcttgcatt tgtaataatt
      961 gttttgtaac tgacatgatt gactcctttt tttaattttt aaaattataa cataaaattc
     1021 ttaaataata attattatta ttaattaaaa atttttatta taattttaac ttaaaatcat
     1081 tatactcttt tttaatgaat tttgattaag aatttaatat attttttaag atcaactttc
     1141 caacttccac accaggttga tcataagtgt taatccctag cataacaccg caagttgaag
     1201 taaaaagttc ataataatac atcaaatatc ccgcatgcca agcgtcaagt ttttcaagtt
     1261 ctatcacatc aacactcaaa ttttcagcga ttaaagcgtg catagttgca tcacattgag
     1321 cgtttaaaag ttcgtgaaga ttgactttat tacttaaaga atctaaaaat ttaaaatgaa
     1381 tatcagggat aataggtgct ttttgagcgt ctttgatttt taaaaaagtt acagttttat
     1441 ttttaggtcc atccatgatg agttgtaaaa aactatgttg atctcttgcg ccaatgagtg
     1501 caataggagt taaacctatg cgtttatagc cttgcttttt acctaaactt tcagcaataa
     1561 gctggatata ccattcatta aagcctttaa aagcatcgct atatgaaaaa agtacattga
     1621 tattggcatt tttgtgtgta caataatgat aggctttttg taaaatttca tcttttttgt
     1681 gagtaaaaaa atcttcaaaa caagctttag ctccttctaa aagagctttg gcattatagc
     1741 cacaaaaaca aagtggaact atacctacgg ctgaaagtat gctaaaacga cctcctacat
     1801 ttgcagggat aaaaaagcat ttaataccta aattttcacc ttcttgatga agttttgaat
     1861 ccttatcggt aataaaaaca aagtattttt ttaattcttg catatcaagt ttaaaatgtt
     1921 caataagaag tttaaaaagc gatacaactt ctatagtact acctgttttg ctgatgatta
     1981 aaaacaaact ttcttcaagc ttgatttttt ctaaagtctt attaaaagaa tgcgagcttg
     2041 tgttatcgag tataaaaagc tctctttggt tgcttttttc attaaaaagc atatcacgca
     2101 aggcttttac accacaactt gaacctccca ttcccactaa aacgatattt tttacatact
     2161 ctttatcttg aataaattgc aagctctcat cgattaaatt caaacttgtg tcaataagat
     2221 gataataccc tatatctcca ctttttacct catcattaat acgatttgca taagaactta
     2281 tagtgtgaat ttcactttgt ttaaaaaaaa gcgtattgtt taacatttac ttttctcgta
     2341 aaaataattt gtcgcctcta caaagccttc tacacttcca caatcaaagc gtttcccttg
     2401 aaatttataa gctaaaacca taccattggt tgcttgagtt aaaagcgcgt cggtaagttg
     2461 aatttcacca ttttttcctg ctttagtatt ttctaaaatt ccaaaaatat caggagttaa
     2521 aatatatctt cctatgatag caagattact tggagcttca tcaggacttg gtttttctat
     2581 catagaatta accatgataa gattttcttc tacaaaattt ccagaaatta ctccatagtt
     2641 tgaaacttgc tcttttggta cttccatcac agctatgatg gtgcagcgat atttttcata
     2701 aatttttacc atttgagcca taacatttaa gccttcttca ttaacacaca aatcatcagc
     2761 caaaattacg ccaaaagctt catcgccaac caaaggtcta ccttttaaaa ccgcatcacc
     2821 taagcctttc atttgatttt gtcttgtaaa agtaaaggta caacgattga tcaaagagcg
     2881 aatttcatca agtaagtatt ctttttttgt acctgaaatt tgatgttcaa gttcataaga
     2941 aatatcaaaa taatcctcca aagctctttt tccacgccct gtgacaaatc ccatattttc
     3001 cattcctgct tctaaagctt catcaactcc ataatggatc aaaggcttgg ttaagatagg
     3061 taacatctct ttaggtaaag tttttgttgc aggtaaaaat ctcgtcccat aacctgccgc
     3121 agggaaaata caagtttgaa gcataaaaat ttccttttat ttttttatca ttatagctta
     3181 tttttatgaa ttttcatgca acaaggcaaa gttctttttg ccttgttatt caaactctgc
     3241 cttagctaat ttaacaatgg tttctactac tttagaatct tcaagtgttg aaatatcctg
     3301 tttgatttct tcgcctcttg ctatagttct taaaattctt ctcattattt taccacttct
     3361 agtttttggc aaacctggag tataaagaat tttttctatt ttagctatag gtcctatttc
     3421 tactcttaaa atgtcattaa gttcttttaa agtttctata gctccgccaa gatcacaact
     3481 ggatgcagga cttaaaacca caaaagcaaa caatgactcg cccttaatcg tatccaaaat
     3541 actcactaca gctgattctg ctacacttgg atgtttagca atagcgcttt caatttcagc
     3601 cgttcctata cgatgtcctg caacattaac cacatcatct gttcttcctg tgatggtaat
     3661 ataaccattt ttatcataaa aagcaccatc gccactaaaa tatacagctt ttccatcttt
     3721 tttagcttga gaaaaataac tttctatata gcgttcatca ttgccccaaa ttccacgaat
     3781 catcgaaggc caaggtttag ttatacaaag caacccatct tcaccttcat cttttttatt
     3841 gccttcttca tcaataactt ccgcaaaaat ccctggcaaa ggcaaggtgg cacaacctgg
     3901 ttttaaagga gtggcgcctg gtaaaggcgt gatcatatgc ccacctgttt ctgtttgcca
     3961 ccaagtatcg actataggac ttttagttcc ccctatttca tcataaaacc acttccaagc
     4021 actaggattg ataggctctc caaccgttcc aagcacttca agcgtactta aatcatattt
     4081 tcttggctca ttaggtgcat cagcatgaag cattcttatg gcagttggcg aagtgtagaa
     4141 tttgcttatt tgatactctt ctatcattct ccaccaacgc ccagaatttg gataagtagg
     4201 agttccttca tgcattatag tcgttgcccc acatgctaaa ggcccataaa ctacataagt
     4261 atgtcctgta atccaaccca catcagcact acaccaataa ttatcataat ctttaatatc
     4321 aaaaacccat tccatagtca tttgtgccca aagtatatat cctgcacttg catgcataac
     4381 tccttttggc ttgcccgttg atcctgaagt gtaaagcaaa aacaacaaat cctcactatc
     4441 cataatttcg ggttcacact tataagactc atttttcaca agttcgttat aaacatagtc
     4501 ccttccttta atatattcta taggctcatt attgcgtata actataagta ctttttctac
     4561 actttcacac ccttcactta aagccttatc tactgcaggt tttaacatat aaggtttgcc
     4621 acgacgaaaa gcaccatcag ccgttactac aagtttagct cctgcatcta taattctatc
     4681 tcttaaggct tcaggagaaa accctccaaa tactacacta tgaatagccc caatccttgc
     4741 acaagctaac attactatag ctgtttctgg aatcataggc atataaatta caaccctatc
     4801 gccttttttt actccgaatt ttttaagcaa attggccgcc ttgcaagttt catgcaataa
     4861 tcttctataa gtataaactt cataatcccc catttcacct tcaaaaatca aagcagcttt
     4921 attgcgtctt gttttcatat gacgatcaag acattgataa cttacattta aagttccacc
     4981 ttcaaaccat ttataaaatg gagctttatc ctcatttagc actcttgaaa aaggcgaaaa
     5041 ccactcaatc ttctcaaatg cttgtctttt ccaaaaacct tcaaaatctt ccttggcttc
     5101 atcgcataaa tcatagtatt cacataaatt ttttatacga gcattacgag aaaattcttt
     5161 acttggctta aaaagctctt gattattttg attaagcata aaaactcctt tatggt
//
LOCUS       DAPOLW010000110         5182 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.110, whole genome shotgun sequence.
ACCESSION   DAPOLW010000110 DAPOLW010000000
VERSION     DAPOLW010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5182)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5182)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5182
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.110"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            285..780
                     /locus_tag="ROE18_001425"
                     /pseudo
     CDS             285..780
                     /locus_tag="ROE18_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779308.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            794..1582
                     /locus_tag="ROE18_001426"
     CDS             794..1582
                     /locus_tag="ROE18_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651595.1"
                     /translation="MINSLNSNLNYDYNTSNFKQDKNIDFKINKHGVAVITGEGALPY
                     RGKKFEYNPKIFGLDESISKKDMQEFNNFMKSNALKDPNKIEKSPLKDFNPAYTKWDP
                     TTEKMMLGFFVSYSKMFHLGYDIIKKADEFYKEFDALISKDLSLNEFKTKYIDFKQRY
                     DEFVKEYEMAMGDKMLLSSDDEIITQQSEKPFKAIQGESKNKETYKDDSTRNELVKKL
                     LEGKFSTSKELELLFGMKFSDDNTGEFNKIISQNTAQKSIDIKA"
     gene            1703..2308
                     /locus_tag="ROE18_001427"
     CDS             1703..2308
                     /locus_tag="ROE18_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HDX3651596.1"
                     /translation="MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILA
                     QKCVQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
     gene            2308..3324
                     /gene="mnmA"
                     /locus_tag="ROE18_001428"
     CDS             2308..3324
                     /gene="mnmA"
                     /locus_tag="ROE18_001428"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HDX3651597.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEQLKISEFNLKNINLFI
                     DAKELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(3352..3603)
                     /locus_tag="ROE18_001429"
     CDS             complement(3352..3603)
                     /locus_tag="ROE18_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDX3651598.1"
                     /translation="MFFVFLVQLALGAPPLLYAFIMIASGNVMMALTHYAIGTAPVIF
                     GTGCVTLKKWWSIGFVISIVDIVVMIAVGLIWWKILGFY"
     gene            complement(3719..3982)
                     /locus_tag="ROE18_001430"
     CDS             complement(3719..3982)
                     /locus_tag="ROE18_001430"
                     /inference="COORDINATES: protein motif:HMM:NF013132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDX3651599.1"
                     /translation="MKKSCSVFLSRFYFYGLELWACFFGISLDATSVALLGLSLVLIS
                     GVLTFGEVLAEKAAWNTLVWFSALVMMATLLGKLGVTQFLAEA"
     gene            complement(3897..4112)
                     /locus_tag="ROE18_001431"
     CDS             complement(3897..4112)
                     /locus_tag="ROE18_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDX3651600.1"
                     /translation="MFITATAPNPLVLYFLSPLEIKSTPNASTFTKDKLKELVKMKNS
                     EKIMLSVFVSLLLLWAGALGLFFWNFS"
     gene            complement(4055..4399)
                     /locus_tag="ROE18_001432"
     CDS             complement(4055..4399)
                     /locus_tag="ROE18_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDX3651601.1"
                     /translation="MARGVIKTGLGEHLAYHFISILGKKTLGIAYSIAFCETILAPVT
                     PSNTARAGAIINPIVQVIARSFKSTPEDGTQNKIGTYLSLVNYQEPILFHQLCLLQLQ
                     LQILWCFIFSLR"
     gene            complement(4622..4759)
                     /locus_tag="ROE18_001433"
     CDS             complement(4622..4759)
                     /locus_tag="ROE18_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:sulfate symporter"
                     /protein_id="HDX3651602.1"
                     /translation="MEDNSWHFLGLFIAVILQVMPLGPVCMIAIAIVALSGITTTQLK
                     I"
     gene            complement(4987..5084)
                     /gene="ffs"
                     /locus_tag="ROE18_001434"
     ncRNA           complement(4987..5084)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="ROE18_001434"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
BASE COUNT         2001 a          755 c          862 g         1564 t
ORIGIN      
        1 ttgttacaaa agcaaacaaa ccgagaataa aattttaagt atttaaagaa aattcactta
       61 actttcaaag caagattaaa cttttgctag aataagtcga tagtagtttt aaagaactta
      121 caaaaagaat ttatgaaagg attttcaatg aaaaagattt ttgctttatt agctttaact
      181 tctttactga ctagttctgt tttgctgagg attttttagc taaactcaca aaaggtgcct
      241 taagcgatac aagcccgggt gtcaaagaac tcagccttga agagatgaaa gaagtgaagg
      301 gtgggtatat aacctattta aaacgactta gtgataatga agttatagcc tttgccaaac
      361 ctgattggaa tttggaatta actttatttc aagatagtaa cggagatcaa tattattgga
      421 atagagaagg acttgttcga tttggtggaa tgtgcggtat agaaactaca aattgtttgg
      481 ttaatggtaa gcattcctat atcaatcaaa aaagactttg ggaaactatg agtatagtgg
      541 gcgatgaccc ttatcgtaac tttcttggat atactgtgaa aagaaatatt ggtatttcta
      601 atttagggaa aagatttgtg tatttttctt atggagtggc tgtaatcaac gaacaatcag
      661 gttcttggta tagagtaaaa tcaagtcctg tctttgaata attacagagt agttaaggaa
      721 atcagttcaa actataaaga ctttttagaa agatatcttg gtgggtattc tatcaagtaa
      781 agaggaaaaa ctaatgataa atagtctaaa ctcaaattta aactatgatt ataacacttc
      841 aaattttaaa caagataaaa atattgattt taaaatcaac aaacacggag tagccgttat
      901 aacaggagaa ggtgctttgc cttatcgtgg aaaaaaattt gagtataatc ctaaaatatt
      961 cggacttgat gaaagtatta gcaaaaaaga tatgcaagaa tttaacaact ttatgaagtc
     1021 aaatgcttta aaagacccca ataaaataga aaaatcccct ttaaaagatt ttaatcctgc
     1081 ttatacaaaa tgggacccaa ctacggagaa aatgatgtta ggtttttttg tttcttattc
     1141 taagatgttt catttgggct acgacatcat caaaaaagcc gatgaatttt ataaagaatt
     1201 tgacgcactt ataagtaaag atttaagctt aaatgagttt aaaactaaat acatagattt
     1261 taagcaaaga tacgatgaat ttgtgaaaga atacgaaatg gctatgggtg ataaaatgtt
     1321 gctttctagt gatgatgaaa ttatcactca acaaagtgaa aaacccttca aagccattca
     1381 aggcgaaagt aaaaacaaag aaacttacaa agatgatagc acaagaaacg aacttgtaaa
     1441 aaaactatta gaaggtaaat ttagcactag taaagaatta gaacttcttt ttggtatgaa
     1501 atttagtgat gataacacag gagaatttaa caaaattatt tctcaaaata ctgcacaaaa
     1561 aagtatagat attaaagctt aaggatttaa aagtctttaa attcctaatc ttaataaaat
     1621 aaacctatta aaacttatat aataaagaac ttattataaa tttttagcta gaatggaatt
     1681 tattttaact aaaggttgaa aaatgaatga aaaaataagc caagatttag aaaaatttgc
     1741 taacatacca aacctaaaaa atgccgtaac tttttttggt tcagcaagac ttaaagaaga
     1801 taatttttat tatcagcagg ctaaaatttt ggcacaaaaa tgtgttcaaa atggtttttg
     1861 tgtgataagt ggtggaggtg gtggtattat gcgtgcagcc aacgaaggtg ctttttcaca
     1921 aaaaaataat acaaattcaa tgagttctgt agggtttaat atatttttac ctcacgagca
     1981 aaaacttaat gattttgtag aatataatat tacttttgag agcttagcca tacgcaaaat
     2041 ggctcttatt gaaaagagtc tagcttttgt gatcttccca ggcggctttg gaacacttga
     2101 tgaattgtgt gaaattctta cattaaaaca attagaattt aaaaaagatg ttcctattat
     2161 tttgtttggg agtgaatttt ggcgaggttt tgatgagttc gtcagaaatt ctttactcaa
     2221 acttgaagtg atttctaaag gagatgagtt aaagtataaa atcactgacg acttggattt
     2281 tataattaat actttaaagg aaatttaatg aaaattctag tcgctatgag cggtggagtt
     2341 gatagtacag tcactgctta taaacttaaa aatttaggtc atgaagttat aggttgttat
     2401 atgaaacttc atggcaaacc aaattatcac gaagaaaata tcaaaaaagt agaaaaagtt
     2461 gcaaactttt tgcaaattcc ttatcatatt ttagacttac aagaagattt taaaaacaaa
     2521 gtttacatgc cttttgtgga tacttataaa gagggtaaaa caccaaatcc ttgcgcttta
     2581 tgtaaccgtt ttatcaaact tggaaaactt ttagaatttg ctaaaagttt aggttgtgaa
     2641 aaacttgcca cagggcatta tgcaagactt gaaaacaact taataaaaac cgcagtagat
     2701 gaaagcaagg atcaaagcta ttttttagct agcgcagata aagaagcttt aaaatatctt
     2761 atttttccgc taggcgaaat gaaaaaagaa gatgtgaaaa aatttgcttc cactatagag
     2821 gttttaaaat cttttgccac ccaaaaggaa agttctgaaa tttgctttgt tgaagatact
     2881 tatgtgcaag ttttagatca gtttatggat acaaaaattc ctggagaagt attagatagt
     2941 agcggaaaag tggtaggcaa acatgagggc tatatgcact ataccatagg caaaagaagg
     3001 ggctttgaag tgcgtggggc acatgaacca cattttgttt taaaaatcaa tcctaagcaa
     3061 aaccaaatca tcgtaggaac caaagaacaa cttaaaatca gtgaatttaa cctaaaaaat
     3121 atcaatcttt ttatagacgc taaagagctt gattgcgaag tgaaaatccg ctatcgttca
     3181 aaatccacac cttgcaaggt agaaatttat gaagataaaa gtgcaaaaat catcctaaaa
     3241 gatcctgttt atggacttgc tagcggacaa atggcagtct tttatgatca tgataaagtc
     3301 atagcaagcg gttttataga ataatttcta ggaattaatt cctagaaatt attaataaaa
     3361 tcctaaaatt ttccaccaaa taagcccaac agctatcatc actactatat caactatgga
     3421 aatcacaaaa cctatactcc accatttttt aagagttaca cagcctgttc caaaaataac
     3481 aggagctgtt cctattgcat agtgagttaa tgccatcata acattacctg aagctatcat
     3541 aataaaagca taaagaagtg gtggtgctcc taaggcaagc tgcactaaaa aaacaaaaaa
     3601 cattgctgat atatgagctg caatggaagc aaagaaatag tgtgtatata aaaaaagcaa
     3661 ggcttaaaaa tatcataata gaaatttccc caagtcccat agcagaagca aattcacctt
     3721 aagcttcagc taaaaactgt gtaacgccaa gtttgccaag taaagttgcc atcattacaa
     3781 gagctgaaaa ccatactaaa gtattccaag cagctttttc ggccaaaact tccccaaaag
     3841 ttaaaactcc actaatcaac accaaagaca acccaagcaa agccacacta gtcgcatcaa
     3901 gagaaattcc aaaaaaacaa gcccaaagct ccagcccata aaagtaaaag cgagacaaaa
     3961 acactgagca tgattttttc actatttttc atttttacaa gttcttttaa tttatcttta
     4021 gtaaaagtag aagcattagg cgtggattta atttctagcg gagagagaaa ataaagcacc
     4081 aaaggatttg gagctgtagc tgtaataaac atagctgatg aaataggatt ggctcttgat
     4141 aatttaccaa agaaagataa gtgcctattt tattttgtgt tccatcttca ggagtggatt
     4201 taaaacttct tgcaataact tgaactatag gatttatgat agcccctgct cttgcagtat
     4261 ttgaaggagt aactggagct aaaatagttt cacaaaaagc tatagaataa gcaataccta
     4321 aggttttttt accaagaata ctgataaaat gataagccaa atgctctcca agtcctgttt
     4381 taataactcc acgagccaca ataatagaat aactataagc taaataagag aatttgaaaa
     4441 accacttaaa gcgtctttta tacccgtttt agattttaaa tttgatatag cagtatttac
     4501 cttttcatct tatactcttt tgatataaaa aatcaagtac tgaagtattt aaaggaaatt
     4561 ttagtctcat caataagttg ttgcgtagaa gttttcgaag tagctttggt gtaaatttta
     4621 cttagatttt caattgggta gtggtaatgc cactaagagc tactatggca atagctatca
     4681 tacaaacagg ccccaaaggc attacttgta aaatcacagc aataaaaagc ccaagaaaat
     4741 gccaagaatt atcttccaaa cctacaagga gtaggtatag gccaaaacac agctgcaatt
     4801 aaaatacgca gcaccaacaa gggaattttc tttctatcca ttgtttatct tttgatattg
     4861 gtaatgaaat tctagttaac taatatttta ataaatctta aaattataat ttttaaataa
     4921 atttttaatt tataaaaaag ctagcctgat tgaaaaataa atagggaatt ttaaaatgaa
     4981 taaaaccctt ccccagataa ctgcggcaca cactaaaatc aagtgctctg ctgtgttccc
     5041 accctgaagc ggtgcttaaa aatagcattg cacaggtcta agaaaaggct ctaaaattat
     5101 atcacaatat acttaaaaag ccttgagaat tataaaacta aaaaaataat atataaataa
     5161 taaattggtt aaaattttat ac
//
LOCUS       DAPOLW010000111         5139 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.111, whole genome shotgun sequence.
ACCESSION   DAPOLW010000111 DAPOLW010000000
VERSION     DAPOLW010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5139)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5139)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5139
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.111"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..458
                     /locus_tag="ROE18_001435"
     CDS             <1..458
                     /locus_tag="ROE18_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDX3651603.1"
                     /translation="ELRAFCNASDEYFLKDFKELLFRSILELDLFFEKLNLKAFTNYE
                     NATKLSLAFFSRKINESRVLYELDSSEFVLFYPKKSEIYERVLNELNVYEFEALLINK
                     PILTKIAKNFLEQSQILIQEKSKFLDLKKAELRKRRAQILNVRESIKED"
     gene            458..1162
                     /locus_tag="ROE18_001436"
     CDS             458..1162
                     /locus_tag="ROE18_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HDX3651604.1"
                     /translation="MRIFLTLFLFFNSLFALSELEEGLKLYEANKFDKAYEIFKNLCE
                     KDISKACFSLAFMHESAKGVSKDLNQVYKFYDKACKLGLANACSNMALLLQNQGYKNE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGEACYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            1298..2026
                     /locus_tag="ROE18_001437"
     CDS             1298..2026
                     /locus_tag="ROE18_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HDX3651605.1"
                     /translation="MQDNIIDRRSFFKLGLLGGSVVAASTIGGGAVLKAAEFTHSHQA
                     SQGKSNKVRGRMFFQTQTEFDTLSAACERIYPKDEQGEGAIGLGVPYFIDNQLASAYG
                     YNDREYMQGPFIEGKAEQGYQTPMQRKDIFLEGVRALEENAQKRYKKSFSLLKGGDQD
                     KILSDFEKGKIQTTGFKSSYFFTLLRDMTVAGVLADPIYGGNDNKNGWRMMQYPGAQM
                     SYVDKIASDEFFNIEPMGLADMEN"
     gene            2028..3749
                     /locus_tag="ROE18_001438"
     CDS             2028..3749
                     /locus_tag="ROE18_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HDX3651606.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNFIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     EPNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     MGVKFVDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSNIGEQYDPKTGKGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSKEKFLHGAMIYSVQLGTRPI
                     QSAQLPAGAPTWGAEFKKALNYNFTRAITVAGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVPYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
     gene            4038..4230
                     /locus_tag="ROE18_001439"
                     /pseudo
     CDS             4038..4230
                     /locus_tag="ROE18_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857465.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(4308..5012)
                     /locus_tag="ROE18_001440"
     CDS             complement(4308..5012)
                     /locus_tag="ROE18_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651607.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANATKMEFEA
                     RAEAMKLKAEEAKEKEEENKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDFKNLVTRT
                     YQQNSQNNDIKFSIAS"
BASE COUNT         1739 a          678 c          960 g         1762 t
ORIGIN      
        1 gtgaattaag agctttttgc aatgcaagtg atgagtactt tttgaaagat tttaaggagc
       61 ttttatttag aagtatttta gagcttgatt tattttttga aaaattaaat cttaaggctt
      121 ttacaaatta tgaaaatgct acgaaactaa gccttgcatt ttttagtcgt aaaatcaatg
      181 aaagtcgtgt tctttatgag cttgatagtt ctgaatttgt acttttttat cctaaaaaaa
      241 gtgaaattta tgaaagagtt ttaaatgaat taaatgttta tgagtttgaa gctttgctta
      301 ttaataaacc tattttgaca aaaattgcaa aaaatttttt agaacaaagt caaattttaa
      361 tccaagaaaa aagtaaattt ttagatctta aaaaagcaga acttcgaaaa agaagagcac
      421 agattttaaa tgttagagaa agtataaagg aagattaatg agaatatttt taactttatt
      481 tttatttttt aattcattat ttgcattaag tgagctagaa gagggtttaa aactttacga
      541 ggcaaataaa tttgataaag cttatgaaat ttttaagaat ctttgtgaaa aagatatttc
      601 taaagcttgt ttttctttag cttttatgca tgaaagtgct aagggcgtga gtaaggattt
      661 aaatcaagtt tataaatttt atgataaagc ttgcaaatta ggtttagcaa atgcgtgttc
      721 taatatggct ttgcttttgc aaaatcaagg ttataaaaat gaagctcttt tggcttttaa
      781 taaagcttgc actttaggag aatcgttaag ttgtaataat atagctttat tttatgaaaa
      841 agaaaaagat ggacaaatgg cctcaagttt ttataaaaga tcttgtgact taaaaaatgc
      901 aagagcttgt tatcagttag gatctttata tgataaagga gagcttgtta aagcaagtgt
      961 aaaatctgct cttgcttttt attctaaatc ttgcacttta ggttttggtg aggcttgtta
     1021 tttgctagga cgctataatc aactagaaaa acaagatcta acaaaggcaa aaagatattt
     1081 tggtatggct tgtgatcaaa aacatcaaga agcttgtgca gcttataaag aacttaattc
     1141 taaagatata gagctttatt aaaagttcta ttttcattac tttcaaagat atacttaaat
     1201 aaaattaaga ataacacaaa atttatcgct ttttaaagtt aaatttatat taataggact
     1261 aatatagtct tgtttaaatt attatcaagg agaagtaatg caagacaata ttattgatcg
     1321 cagaagcttt tttaaactag ggcttctagg tggttctgta gtagcagcta gcactatagg
     1381 tggcggtgct gttttaaagg cagcagaatt tacgcattcg catcaagctt cacaagggaa
     1441 atcaaataaa gttagaggta gaatgttttt tcaaactcaa actgaatttg ataccttaag
     1501 tgcagcctgt gaaagaattt atcctaaaga tgagcaagga gaaggagcta taggtttagg
     1561 cgtgccttat tttatcgata atcagctagc tagtgcttat ggttataatg atagagaata
     1621 tatgcaagga cctttcattg agggtaaagc tgaacaaggc tatcaaactc ctatgcaacg
     1681 caaagatatt tttttagaag gtgtgcgtgc tcttgaagaa aatgctcaaa agcgttataa
     1741 aaaatctttt tctttgctta aaggtggaga tcaggataaa attttaagtg attttgaaaa
     1801 aggaaaaatt caaactacag gttttaaatc ttcttatttt ttcacacttt taagagatat
     1861 gacagtagct ggagttttag ctgatccaat ttatggcgga aatgataata aaaatggttg
     1921 gagaatgatg caatatccag gcgcacaaat gagctatgtg gataaaattg caagtgatga
     1981 attttttaac attgaaccta tgggtttagc agatatggag aattaaaatg gctgaagtat
     2041 taaaaaaagt agatgtagta acagttggag caggatggac tggaggtata gtggccgcag
     2101 agcttactaa agcaggtttg aatgtactta gtttagaacg cggacatatg caaagtactg
     2161 aaaattttaa ttttatccat gatgagtgga gatatgggat taattatggt ttgatgcaag
     2221 attgctcaaa agacactgtg acttttcgcc atgatcctag tggtttagcc ttaccttatc
     2281 gtaaaatggg ttcgttttta ttgggtaata atgttggcgg tgcaggggtg cattggaatg
     2341 gttggacttt taggtttatg ccttatgact ttgaaattca aaccctaagc aaacaaagat
     2401 atggtaataa attaggtaat gattatacct tgcaagattg gggcgtgact tataaggata
     2461 tggagcctta ttatgataga tttgaaaaaa cctgtggggt atcaggtgag ccaaatcctt
     2521 tagcggaaaa aatgggagct tttagatcca gtccttatcc acaagaacct cttgaaaata
     2581 ctaaaatgct taaacgattt gaaagtgcag caaaaagttc aaatttacac acttatcgtt
     2641 tgccagcttc aaattctaaa ggtggctata caaaccctga tggtcaagat ttagctcctt
     2701 gtcaatactg tgcgtattgt gagcgttttg gttgtgagta tggcgcaaaa gcaagtcctt
     2761 taaacacagt aattccaaag gctatgagca caggtaaata cactatacgc acttatagca
     2821 atgtaacgca aattcttaaa aaagacggaa aagtaatggg ggtaaaattt gtcgatacta
     2881 gaacgatgaa agagtatatt caacctgctg atatagttgt gcttacaagt tatatgttta
     2941 acaatgctaa gcttttaatg gtaagcaaca taggtgagca atacgatcca aaaacaggta
     3001 aaggaacttt aggtagaaat tattgttatc aaatgaacat gggtacaaca gctttctttg
     3061 atgagcaatt taacaccttc atgggttcag gtgctttagg aactacgagt gatgatttta
     3121 acggagataa ttttgatcat tctaaggaaa aattccttca tggagctatg atttatagcg
     3181 ttcagcttgg aactcgccct atacaatcag cccaacttcc agcaggagct ccaacttggg
     3241 gtgctgaatt taaaaaagca ttaaactata atttcacaag agctattacc gtagcaggac
     3301 aaggtgcttc tttgcctcat aagaataatt atttaagtct tgatccaact tataaagatg
     3361 cttttggtat gccactttta cgcttaactt ataatttcac cgatcaagat agagctttgc
     3421 ataaatttat tacagataaa acagctgagg tagcaaaaag aatgcaagga gtaaaatcaa
     3481 tcaaaaaagg cgcttatctt aaggattata gcgttgtgcc ttatcaatct actcataaca
     3541 caggtggaac aacaatgggt gcagatagag aaactagtgt ggttaatact tatttacaac
     3601 actgggatgc ggataatctt tttgttgtag gagcaggaaa tttccaacac aatagtggat
     3661 ataatccaac tgatactgtg ggagctttgg cttatcgctg tgctgaaggt attttaaaat
     3721 atcataaaag tggaaaaagc ttagcttgat aataacttga gagtttttga aaactctcaa
     3781 gattataaat ttttaatttt cttccgatat agtatataat atcaaggaag gcaaaaatga
     3841 ttaatggtat aaattcttat tcaaactaca attatacaaa aaggcaaatg tagtctgctc
     3901 ttggagggtg gtatgcaaga tgattacttt aagttctttt aatagatatt ttggaaataa
     3961 tcctctgcag acacttacta aaattagaga tgaaagtatt gaaaatgcaa aaatttaaat
     4021 tataaaaagg ataaaaaatg ttaaatattt tacatgcaaa ttcaagtcat cgtttccata
     4081 aatgtatgcc taaggaagtt catcaaatat atgatacttt aaagcttatg gaacagcaag
     4141 aaggtacaaa aaaaagtaga agccaaaaaa gaagagcaaa gtaattctac aaatacagat
     4201 aaagcagata ataaaaaaat aaatttttag acatgtccgt ttagttttaa aacaaagctt
     4261 tatttataag gaagattggc ataatttttt tatttaaatt aagaatttta agatgcgatg
     4321 ctgaatttaa tgtcgttatt ttgtgaattt tgttgataag ttctagtgac aagattttta
     4381 aagtctttat caaaatttga atttttatcg ttgttttttg aatctttatc tgttttttct
     4441 aagctatttt ctgaattttt gtcatctttt tctttatttt cttcttcttt ttctttggct
     4501 tcttcggctt taagtttcat tgcttcagct cttgcttcaa attccatttt tgtagcattt
     4561 gctgcaactt tatagtcttg tgggctagga tcagcaggag ccatagctgc tgctgcgatt
     4621 tgtcttgcat tggctatagt ttcttctggt gtgtttcctt tttgcatgct gataggaact
     4681 tcgcccgctg tagcatacat ttgattatca gggcctcttg tgtaagtaaa acttgcagca
     4741 cctgctaagc cgccacccgc tgcttgatgt gcagcttcat gagcctttac atttctatcg
     4801 atactttgga gttcgcgaac ttgagctact tctttttggc ttagctctac gccattaacc
     4861 atttgggttt gttcgccatt tttttcttta tcatctttat tttcactaag atttttttca
     4921 tctttttgag tggaatcaga ttgatttgtt ttatcaaaag aaggtttgct agagtagtaa
     4981 tcataagagt tataacttga actaatttgc atttatcctt ctttttgttt tttaaatttt
     5041 taggaatttt aacgcatttt gacttaaaaa tttgataaat tttgtaaaat aatcataaat
     5101 acaatttcaa aggaatgtaa tgatttatga aaatgattt
//
LOCUS       DAPOLW010000112         5109 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.112, whole genome shotgun sequence.
ACCESSION   DAPOLW010000112 DAPOLW010000000
VERSION     DAPOLW010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5109)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5109)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5109
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.112"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            65..445
                     /locus_tag="ROE18_001441"
     CDS             65..445
                     /locus_tag="ROE18_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651608.1"
                     /translation="MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYDEKLISYLSQN
                     DFEFAILVQNKDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFDSRVLMIVDKLEN
                     FKKFYKLKIDGIILKDNIDNFPKN"
     gene            490..4002
                     /locus_tag="ROE18_001442"
     CDS             490..4002
                     /locus_tag="ROE18_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[ACP]--phospholipid O-acyltransferase"
                     /protein_id="HDX3651609.1"
                     /translation="MQKKSFLKIYGLIPFLLIAFINAFVDLGHKIIIQNTIYKAYEGS
                     EQLFLNAIVNALILLPFILMLSPSGFLADKYPKNIVMKISAIFNVILTLIICICYYSG
                     AFWMAFIFTFIMGAQAAIYSPSKYGFIKELVGKDFLAMGNGVINAVSIVAILAGMALF
                     SLSFESLYSSMYNQTDEILKEVAPLGIVLILFSCIEVFFAWRLPKLKQTNKDLVFNKK
                     DYIRGKLLINNLKLVFKNKTIWLCIIGISFFWAISQLYLVSFPVFAKNELFIENTFYV
                     QISLAFSGIGVILGSLVAGKFSKNYIELGFIPLGALGMFLMAFLMPYFISLLSYSFLF
                     FFFGFCGALFIIPLNTLIQFHAKENELGQILAGNNFFQNIAMLGFLLLATLFVKFEIN
                     VIYLFYFIALVTFIGSFYILLKLPFSLVRILLSIAFLQRYRLLVEGFENIPEKGGALL
                     LGNHISFIDWAVVQMAIPRKIYFVMERSIYSKWYIKIFLDKFGIIPVSSTGSKTSLEL
                     IAKHIKEGNLVCLFPEGTLSRHGQLNEFKAGFELACECLSEDDGKIIPFYIRGLWGSA
                     FSRSDEEFSARNRTLNKRKIAIAFGKAIPLHSKKDEVKAKVFELSFMAWKSQCEAMHT
                     IARAWIDTAKKNLNQIAIIDTLAGDISYRKMLTLSLFLNFFIKRKSKELNINLQRGSY
                     APKEEAIGILLPASFASSLTNLSVLIAEKIAVNLNFTAGEKALKAAIKNAQISQIYTS
                     KTFLEKLANKGINLNFDTNIHLIYFEDIVEDFKMQKTKIFSMMLAVSIIPSFILKSIF
                     TPSKNNLAIAAILFSSGSEGSPKGVMLNNRNILSNIAQISDVLCTRNNDVILSSLPPF
                     HAFGLTVTTFLPLLEGIKSITFSDPTDALGVAKAVAKNNVTIMCGTSTFLGIYARNKK
                     LDALMFESLRIVVSGAEKLKNEVRTTFEMKFKKSIFEGYGATETTPVASVNLPNHFDV
                     DYWLIHRANKEGSVGMPLPGTAVRIVDPNNYENLKTNEDGLILIGGHQVMVGYLNDKE
                     KTDEVVKEIDGIRWYNTGDKGHLDEDGFLYIVDRYSRFAKIGGEMISLGAIEEEIAKF
                     IDTEVVKFCATSLEDEKKGEQIVLLIECNNEIFEGVCEAIKNSNIPTLFKPRYYFQIE
                     KIPLLGSGKVDLKKVKELAKNLAI"
     gene            complement(4010..4921)
                     /locus_tag="ROE18_001443"
     CDS             complement(4010..4921)
                     /locus_tag="ROE18_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDX3651610.1"
                     /translation="MFVFIPLFTIFILLAGGYFAKRIGVLKQKQARTFLDFAIIFALP
                     CLIFDKAYHLNFDFSLIIFIFIGLFSCILAAFFAILIGKVFHFSKVTLVSMFLLSCFG
                     NTIFVGMPIVAGIFNDPQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLLANVK
                     KILSFPPFLALLFGFLCKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSY
                     KPTIVVIFAKMILAPLFFVFCLKLFNLELKDSTIVAIIESAAPTMTLAGAMVMKAKLD
                     SNLAVSAVAFGVLFAFVSMPILIWTLL"
BASE COUNT         1856 a          642 c          822 g         1789 t
ORIGIN      
        1 ttgcttggta acaattttat aagtataatt tacaaaataa taaaaaatag agctaaggaa
       61 aaaaatgctt attattggac ataaattatt aaaaaattta gatttttctt ttattgaaag
      121 tgttgaagaa gttaaagata ataaagttta ttgtattgtt tatgatgaaa aattgatttc
      181 ttatttaagt caaaatgatt ttgaatttgc tattttagtt caaaataaag atgagatatt
      241 tttagccaat gctttaggag ctaagttttt gctttgtaat gataaaaaac ttgcaaaatt
      301 tgctagtaag gttgcagaat tttatgtttt tgatagtagg gttttaatga ttgttgataa
      361 attagagaat tttaaaaaat tttataaatt aaaaatcgat ggaattattt taaaagataa
      421 tatagataat tttcctaaaa actgataaat tcttttgtaa aataagcgct aattgacgag
      481 gtttaaataa tgcaaaaaaa atcttttttg aaaatttacg gattaattcc ttttttactt
      541 atagcattca tcaatgcttt tgtggatttg ggacataaaa ttattattca aaatactatt
      601 tataaggcct atgaaggaag tgagcagtta tttttaaatg ctatagttaa tgctttgatt
      661 ttacttcctt ttattcttat gctttctcct tcgggttttt tagcggataa atatccaaaa
      721 aatattgtaa tgaaaatttc agcaattttc aatgttatac tcactttaat aatttgcatt
      781 tgttactata gcggtgcttt ttggatggct tttattttta cttttataat gggagcacaa
      841 gcagcgattt attcaccaag taaatacggt tttattaaag aactcgtggg aaaagacttt
      901 cttgctatgg gtaatggtgt aattaatgcg gtaagcattg tggcaatctt agcgggaatg
      961 gctttatttt ctttaagctt tgaaagtctt tatagttcta tgtataatca aacagatgaa
     1021 attttaaaag aagtagcgcc tttaggaatt gtgctaattt tattttcttg tatcgaagta
     1081 ttttttgcgt ggcgtttacc taagctcaaa caaacaaata aagatttagt ttttaataaa
     1141 aaagactata ttcgtggaaa acttctaata aataatctta agcttgtttt taaaaataaa
     1201 actatttggc tttgtataat tggaatttca tttttttggg ctatatctca actttatctt
     1261 gtcagctttc ctgtctttgc taaaaatgaa cttttcatag aaaatacttt ttatgtgcaa
     1321 atttcactcg ctttttctgg tataggagtg attttaggct ctttagtagc tggtaaattt
     1381 tcaaaaaatt atatagaact tggatttatt ccacttggtg cattgggtat gtttttaatg
     1441 gcttttttaa tgccttattt tataagttta ttaagttata gttttttatt tttctttttt
     1501 ggattttgcg gagccctttt tatcattcct ttaaatactt taatccaatt tcatgctaaa
     1561 gaaaatgaat taggacaaat tcttgcagga aataattttt ttcaaaatat tgccatgttg
     1621 ggatttttgc tcttggcaac tttatttgta aaatttgaaa tcaatgtgat ttatttgttt
     1681 tattttattg ctttggtaac ctttatagga agtttttaca tacttttaaa actccccttt
     1741 tctttagtgc gtatactttt aagcatagct tttttacaac gataccgttt acttgtggaa
     1801 ggttttgaaa atataccaga aaaaggtgga gctttacttt tgggtaatca tatttctttt
     1861 attgattggg ctgttgtaca aatggcaatt ccaagaaaaa tttattttgt tatggaaaga
     1921 agtatttatt ctaaatggta tattaaaatt tttcttgata aatttggtat tattcctgta
     1981 tcaagtacag gaagtaagac gagtttagaa ctgatagcaa agcatattaa agaaggtaat
     2041 ttagtttgct tatttcctga aggtacactt tcgcgacatg ggcaattaaa tgaatttaaa
     2101 gcaggatttg aattagcttg tgaatgttta agtgaagatg atggaaaaat tattcctttt
     2161 tatataagag ggctttgggg tagcgctttt tcaagaagtg atgaagaatt ttcagcaaga
     2221 aaccgcactt taaataaaag aaaaattgct atagcttttg gtaaagctat acctttgcat
     2281 tctaaaaaag atgaagttaa agctaaagtt tttgaacttt cttttatggc ttggaaatca
     2341 caatgcgaag ctatgcatac tatagcaaga gcttggatag atacagctaa aaaaaatcta
     2401 aatcaaatag ctattatcga tacactagct ggagatattt cttatagaaa aatgttgact
     2461 cttagtttat ttcttaattt ttttattaaa agaaaatcca aagagttaaa cattaacctt
     2521 cagcgtggaa gttacgctcc taaagaggaa gctataggaa ttttactacc tgcttctttt
     2581 gcaagttctt taaccaatct atctgtttta atcgcagaaa aaattgcagt aaatcttaat
     2641 ttcactgctg gagaaaaagc tctaaaagca gctataaaaa atgcgcaaat ttcacaaatt
     2701 tatacttcta aaactttttt agaaaaatta gcaaataaag gtataaacct aaatttcgat
     2761 acaaatatac atttaattta ttttgaagat attgtagaag attttaaaat gcaaaaaact
     2821 aaaattttta gcatgatgct agcagttagt attataccta gttttatact caaaagcatc
     2881 ttcactcctt caaaaaacaa tcttgccatc gcagctattt tatttagtag tggaagtgaa
     2941 ggttctccaa aaggtgttat gctcaataac cgtaatattt taagcaatat agcacaaatt
     3001 tctgatgtgc tttgcacaag aaataatgat gtcattctct catctttacc accttttcat
     3061 gcttttggac ttaccgtaac tacatttttg cctttgcttg aaggtattaa aagcatcact
     3121 ttttcagatc caaccgatgc cttaggggtt gccaaagctg ttgctaaaaa taatgtcact
     3181 attatgtgtg gaacttcaac ctttttagga atttatgcaa gaaataaaaa gcttgatgct
     3241 ttaatgtttg aaagtttaag aatagttgta tcgggcgctg aaaaactaaa aaatgaagta
     3301 agaactactt ttgaaatgaa gtttaaaaaa agcatttttg aaggttacgg ggctacggaa
     3361 accacgcctg tggcgagtgt aaatttacca aatcattttg atgtggatta ttggcttata
     3421 catcgtgcca ataaagaagg aagcgtagga atgcctctac ctggaactgc ggtacgtatt
     3481 gttgatccaa ataattatga aaatttaaaa acaaatgaag atggactcat acttataggc
     3541 ggtcatcaag ttatggtagg ctatcttaat gacaaagaaa aaaccgatga agtggttaaa
     3601 gaaattgatg gcataagatg gtacaacacg ggagataagg gacatttgga tgaagatggt
     3661 tttttatata ttgtcgatcg ttattctcgc tttgcaaaaa ttggcggaga gatgatttct
     3721 ttgggtgcaa tagaagaaga aattgccaaa tttatagaca ctgaagtggt taaattttgt
     3781 gccacatctt tagaagatga gaaaaaaggg gaacaaattg ttttactcat agaatgcaat
     3841 aatgaaattt ttgaaggagt atgtgaggct ataaaaaatt ctaatatacc tacacttttt
     3901 aaacctagat attattttca aatagaaaaa attcccctcc taggttcagg aaaagttgat
     3961 cttaaaaaag ttaaagaatt agctaaaaat ttagccatat aatttgagct tataacaaag
     4021 tccaaattaa aattggcata gaaacaaaag caaaaagaac tccaaaggct acagcactta
     4081 cggctaaatt actatctagt ttagctttca ttaccatagc tcctgctaaa gtcatagtag
     4141 gagctgcact ttctataata gcaacgatgg tagaatcttt taattccaaa ttaaataatt
     4201 ttaaacaaaa tacaaaaaat aaaggagcta aaatcatttt agcaaagatg acaactattg
     4261 taggtttgta agaggtttta atcgccataa agccaagtcc taaacctata gcaaaaagtg
     4321 caacaggggt tgcagaggca ccaaataaac gaataggaga gaaaataaat tcaggtaaag
     4381 taatcaattt acacaaaaaa ccaaaaagca aagctaaaaa aggtggaaaa ctaagaattt
     4441 ttttaacatt agcaagcaaa ctgacttttt ctccatttcc caaagaaagt ataaaaggtc
     4501 caaaaagcga tataggtaaa gttgtggcta aagcatcgta aaatataact tcagcgctaa
     4561 attgtgggtc attaaatata ccagcaacaa taggcatacc cacaaatata gtatttccaa
     4621 aacaagaaag caaaaacata ctgactaaag ttactttaga aaaatgaaaa acttttccaa
     4681 taagaatagc aaaaaaagct gctagtatac agctaaacaa tccaataaaa ataaaaataa
     4741 tcaatgaaaa atcaaaattt aaatgatatg ctttatcgaa aatcaaacaa ggtaaagcaa
     4801 aaataatagc aaaatctaaa aaagtcctag cttgtttttg ctttaaaacg ccaattcttt
     4861 tggcaaaata tccgcctgca agtaaaataa aaattgtaaa taatggtata aaaacaaaca
     4921 ttgaataatc ctttttaagg gatggttttt gaaaacggat agaattatat tctttatact
     4981 taaaaaaaat cttaatattt tttaagtttt ttaaaaaaac caatattttt tattttttgt
     5041 aactttaaga aattgtaagt tgaaatttga ttttgaatag ttagtatttt aagttgaatg
     5101 attataatt
//
LOCUS       DAPOLW010000113         5101 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.113, whole genome shotgun sequence.
ACCESSION   DAPOLW010000113 DAPOLW010000000
VERSION     DAPOLW010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5101)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5101)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5101
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.113"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..204
                     /locus_tag="ROE18_001444"
     CDS             <1..204
                     /locus_tag="ROE18_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HDX3651611.1"
                     /translation="LANQMRYNELKLDKLQNAYLQHENFFNKSKKFICIRKNGKIANL
                     EDLKSDDIVILSSQTSQKEAKIL"
     gene            214..1290
                     /gene="serC"
                     /locus_tag="ROE18_001445"
     CDS             214..1290
                     /gene="serC"
                     /locus_tag="ROE18_001445"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HDX3651612.1"
                     /translation="MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLALNGVCEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFDHIPRVEFSDNADYAYICSNNTIYGTQYQNYPKT
                     KTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQVKTLCEFMKEFQGKYA"
     gene            1287..1637
                     /locus_tag="ROE18_001446"
     CDS             1287..1637
                     /locus_tag="ROE18_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDX3651613.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDALFEKIGANKGDLIQIQIWLANMQDFDAMNEIYDAWIKNYPKPVRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(1634..2608)
                     /locus_tag="ROE18_001447"
     CDS             complement(1634..2608)
                     /locus_tag="ROE18_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HDX3651614.1"
                     /translation="MLKASLKSIASYIPEKILSNADLEKMVDTTDEWIIRRTGIKERR
                     IASENENTSDLGTKAALKAIERANLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIIGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSSLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILAKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGNLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(2601..3587)
                     /gene="plsX"
                     /locus_tag="ROE18_001448"
     CDS             complement(2601..3587)
                     /gene="plsX"
                     /locus_tag="ROE18_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HDX3651615.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALETKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNGNATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLKLGRLKGISRPAIATLMPNIVNKTLLLDVGANTDCKAENLFQFAIMGEVY
                     AREIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKPSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINKFIENELGKYNA"
     gene            complement(3593..3739)
                     /gene="rpmF"
                     /locus_tag="ROE18_001449"
     CDS             complement(3593..3739)
                     /gene="rpmF"
                     /locus_tag="ROE18_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HDX3651616.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            complement(3763..4116)
                     /locus_tag="ROE18_001450"
     CDS             complement(3763..4116)
                     /locus_tag="ROE18_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651617.1"
                     /translation="MKIPFSKINTKEYPFKLNLENIIFEGNLVKINPKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANELSNTIEFFDGHIDLIEVAISEL
                     EAYLSDYFYCINCNN"
     gene            complement(4117..4530)
                     /gene="ndk"
                     /locus_tag="ROE18_001451"
     CDS             complement(4117..4530)
                     /gene="ndk"
                     /locus_tag="ROE18_001451"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HDX3651618.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIEFFFKPNEIC"
     gene            complement(4643..4927)
                     /locus_tag="ROE18_001452"
     CDS             complement(4643..4927)
                     /locus_tag="ROE18_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HDX3651619.1"
                     /translation="MAVKITDICIACGSCIDECPVNAIVDDTNNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVESGQPSRDNIGADMRSGDTPVFA"
BASE COUNT         1695 a          811 c          770 g         1825 t
ORIGIN      
        1 ttggcaaatc aaatgcgtta taatgaatta aaattagata aattgcaaaa tgcttatttg
       61 caacatgaga atttttttaa taaaagcaaa aagtttattt gtatcagaaa aaatggtaaa
      121 atagcaaatt tagaagatct taagagtgat gatatcgtta ttttaagttc tcaaacttct
      181 caaaaagaag caaaaatttt ataaggatag attatgagaa aaatcaattt cagtgcaggg
      241 ccatcgactt tacctttaga aattttagag caagctcaaa aagaactctg tgattatcag
      301 ggtaggggtt attctataat ggaaatttct caccgcacaa aagtatttga agaagtgcat
      361 tttggagcac aagagaaagc taaaaaactt tacgagttaa atgatgatta tgaagtatta
      421 tttttacaag gtggagcaag tttgcaattt gctatgattc ctatgaattt agctttaaat
      481 ggggtttgtg aatatgcaaa tacaggagtt tggacaaaaa aagcgattaa agaagcacaa
      541 attttaggtg tcaatgttaa aaccgtagca agtagtgagg aaagtaattt cgatcatatt
      601 cctagagtgg aatttagcga taatgctgat tatgcttata tttgttctaa caatactatt
      661 tacggcactc aatatcaaaa ttatcctaaa actaaaactc ctttgattgt ggatgcatcg
      721 agtgattttt tttctagaaa agtagatttt tcaaatattg ctctttttta tggcggagtg
      781 caaaaaaatg ctggaatttc gggtttaagt tgtattttta tccgtaaaga tatgttagaa
      841 agatctaaaa ataaacaaat tcctagtatg ttaaattatt tgactcatgc tgagaatcag
      901 tccttgttta acacgcctcc aacctttgcc atttatatgt ttaatcttga aatggattgg
      961 cttttaaatc aaggtgggct tgataaagtg catgagaaaa attctcaaaa agctactatg
     1021 ctttatgaat gtattgattt aagtaatgga ttttataaag gacatgcaga taaaaaggat
     1081 agatctttaa tgaatgtgag ttttaatatt gctaaaaata aagatttaga gcctcttttt
     1141 gtaaaggaag ccgaagaagc tggaatgata ggacttaaag gacatagaat tttaggagga
     1201 attcgtgcaa gtatttataa tgcgcttaat ttggatcagg taaaaacctt gtgtgaattt
     1261 atgaaagaat ttcaaggaaa atatgcatga taaagcgttt tgatgagtgc gatagaatgt
     1321 cgcaaattat tgtttttgat aaatatttta agactgcagg acaagtggct tttgaaccta
     1381 gcggagatat taaaaaacaa actaaagaag cgcttgcaga acttgatgct ttgtttgaaa
     1441 aaataggcgc aaacaaagga gatttgattc aaattcaaat ctggttagct aatatgcaag
     1501 attttgatgc aatgaatgaa atttatgatg cttggattaa aaattatcct aaacctgtta
     1561 gagcttgtgt aggaagtgct ttagcagagg gttatttggt agaaattcaa gcttttggaa
     1621 agctaagaga gaattaaaaa ttctctcctc caaattttaa aagcgcagat ccccaagtaa
     1681 aaccaccgcc aaaagcatct agtaagatca gatttccttt tttaagtcga ccttcttcat
     1741 aggcatcatt cattgccata ggtatagaag cagctgaagt attgccatat ttttgtacag
     1801 tgatcacaca tttttcatcg cttagattga gtttttcttg gacggcttta atgatgcgta
     1861 gattagcttg atgaggaata aaaagatcaa tttcttgtgc taaaatgtta tttttagcta
     1921 aaatttctac aacatcatta ctaagcgtgt ttactgctat tttaaaaact tcattgcctt
     1981 tcatttgcat agaaagtgtt tgacataggc ttgatttttg cgatctttga gtcattaaaa
     2041 gatctccata attaccattg cttgcagtat gtacatcaag gatatgattt tcattatcca
     2101 aacttacaac tccagcacct gcaccgtctc caaagagtat gcaaatactt ctgtcattgt
     2161 aatccataat tgaacttgtt ttttcagctc ctatgattaa aacatttttt ttcaaaccac
     2221 tttctactaa ggctttagct tgttcaagca aatagataaa accagaacaa gctgctgaaa
     2281 tatcaaaagc gctaatattt acaagtccta aatttgaagc aattttacaa gccgttgaag
     2341 gcatagtaaa ataatcagga cttaaagtag ctacaagaat cgcatcaata tcttcaggtt
     2401 ttaaatttgc tctttctatg gcttttaatg cagcttttgt gcccaaatcg ctagtatttt
     2461 cattttcact agcaatgcgc ctttctttaa tacctgtgcg tctaatgatc cattcatcgg
     2521 tggtatctac cattttttca agatcagcat tgcttaaaat tttttctgga atataagaag
     2581 ctatactttt aagactggct ttaagcattg tatttcccaa gttcattttc tataaattta
     2641 ttgatatgag attggctaaa atttatagct tgaaaaattg catttttaat agctctagaa
     2701 tcgctttttc catgacttat gatcacgcag ccattaactc caagaagggg tgctccgcca
     2761 tattcttgcc aatctgtgtg tttttttaat tttttaaaag atggcttcat aagtaaagca
     2821 cctattttag aaataaaaga ttgctttact tcgtttttta gaagttgaaa aatagctgtt
     2881 gccacacctt cacaagcctt taagataaca tttccatcaa aaccatcgca gactaaaaca
     2941 tctatttcac cattgaaaat atctctacct tcagcattac ctataaaatt tggaattttt
     3001 ttcataagct gatgactttc tttggtaagt tcattacctt tgcattcttc ttcaccatta
     3061 gaaagtaaag caaggcgtgg tttttgaatt tgcatgattt ctctagcata aacttcaccc
     3121 attatggcaa attgaaataa attttcagct ttacaatctg tattagctcc aacatccaaa
     3181 agtaaagttt tgttaacgat atttggcatt aaagtggcaa tagcaggtct tgaaatacct
     3241 ttaagtcttc caagctttaa ggtagccaaa gacatacttg ctccactatg acccgctgaa
     3301 actacagcat ctactttttt ttcttttaat aaattaatag ctttgtatat ggttgtttct
     3361 ttatttttta aagcatctgt ggcatttcca ttcatcgaaa aaatttcact agcttcttcg
     3421 tattgtatat attgttctaa tttttttggt attaaaggtt ttagaatttt agaatttccc
     3481 actaagatag cgttaaaagg ttttgtttct agtgccttta aaacgccttc tataatgggt
     3541 ttttctccaa aatcaccacc cattgcatca atggcaatgt taatcattga ttttaatatt
     3601 ccttagttgt tggattcgca cggtgaggca ttttgtagct tccatctttg tcttttatag
     3661 gcataggaag actaacttta tagtgagttc tgcgtttagc tgcacgagtt ttgctcactc
     3721 ttctctttgg tactgccatt ttttctcctt tataaaattt aattaattat tgcaatttat
     3781 gcaataaaaa taatcactca aataagcttc aagctcgctg atagcaactt ctattaaatc
     3841 aatatgtcca tcgaaaaatt ctatagtatt gctcaattcg tttgcttcat ctttaaaaat
     3901 accatcactt gcaaaaagtt ctaaattttc tttaatttca agttctaact cagttccaca
     3961 actatcacaa ggtctataga taaaaccttg cataatagca tttattttaa caagcttagg
     4021 atttattttt actaaatttc cctcaaaaat aatattttca agattaagtt taaaaggata
     4081 ttcctttgta ttaatcttag aaaaagggat tttcatttag caaatttcat ttggtttaaa
     4141 gaaaaattca atttctattt ttgcattttc taagctatcg cttccatgaa cagcattagc
     4201 gtcaatactc tcagcaaaat cagccctaat tgttcctgct ttagcttctt taggatttgt
     4261 tgctcccatt aaatctctat ttttcaatac agcaccttct ccttctagta tagaaacaac
     4321 aacaggaccg ctaatcataa attcaaccaa gtctttaaaa aaaggtcttt ctttatgaac
     4381 agcataaaaa ttttcagctt gttctttact aagttgaact tttttcattg cagcgattct
     4441 taatccattg ctttcaaaac gatctaaaat ttttcctata acaccttttt taacagcatc
     4501 aggtttaatt atagataaag ttttttccat ctttgtaata actccttatt ttaataaagc
     4561 ttaaaattat acttgaattt gtttaaagaa agttaaatta aattaaaaag ctaggaatct
     4621 ctagcttttt aattttttaa aattatgcaa aaactggagt gtccccactt ctcatatcag
     4681 caccaatatt atcacgactt ggttgtcctg attctacagc actccaaact atacatccat
     4741 ctgttgggca agcactagca caagctggtt gatcattatg tcctacgcat tcaacgcatt
     4801 tgtttgcata gacataatat ctatcttcac cttctggatt gttagtatca tcaacgatag
     4861 cattcactgg acactcatca atacaagaac cacaagcaat acatatatct gtaattttta
     4921 cagccatttt ttctccttat ttaatattaa gatttaaaag attttagcat aaaattctta
     4981 aataaagtaa attttgataa tcaaaaattt accttatttg ataataatta taactttttt
     5041 aaatttttaa tattatctta gatatttaaa aaaaaataaa gatttaaacg atataatttc
     5101 g
//
LOCUS       DAPOLW010000114         5083 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.114, whole genome shotgun sequence.
ACCESSION   DAPOLW010000114 DAPOLW010000000
VERSION     DAPOLW010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5083)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5083)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5083
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.114"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            27..1415
                     /locus_tag="ROE18_001453"
     CDS             27..1415
                     /locus_tag="ROE18_001453"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HDX3651620.1"
                     /translation="MRLLDSVTKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLAQGNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVL
                     DPDFKPRATHYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENIS
                     RLSNEVQKRNESDFVLWKFDENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGI
                     DLLFPHHENEAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMG
                     EALRFYLLSSHYRSHFNYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKS
                     EIAKQILEILNDDLNVSKALALLDDFISSANLELDKESKNKILKQNIKEALSELAKIF
                     GFGFMDATLYFQWGVSKEEREEIEKLILERTEAKKNKDFNTADAIREQLNSKKITLLD
                     TPNGTIWEKINA"
     gene            1408..3150
                     /locus_tag="ROE18_001454"
     CDS             1408..3150
                     /locus_tag="ROE18_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDX3651621.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFAKHNDTLCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANAYEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKAIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            3182..4240
                     /locus_tag="ROE18_001455"
     CDS             3182..4240
                     /locus_tag="ROE18_001455"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HDX3651622.1"
                     /translation="MAYEMIKLLLFKLNPEHAHALVEYSLRALSASFPGALSFLAHKY
                     IVDDESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DYFTLFRDFKDLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKITSKPILIKIAP
                     DMKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VTKILFGKTLLIASGGIDSADIAYERIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGFLHISEAVGVNLK"
     gene            4237..>5083
                     /locus_tag="ROE18_001456"
     CDS             4237..>5083
                     /locus_tag="ROE18_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HDX3651623.1"
                     /translation="MIAYEKIQLKNKLEVYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMANLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKKHFEKIKNTKTI
                     PKIHTKEPKQDGVKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILI"
BASE COUNT         1811 a          552 c          976 g         1744 t
ORIGIN      
        1 tttacaagtt ttaaaggagt tttttaatga gattattaga cagtgtaaca aaagagaaaa
       61 taaaacttga taaaaaagat attagtattt acttatgcgg gcctacggtt tatgatgatg
      121 cacatttagg acatgcaaga agtagtgttt gttttgatct tttgcgtagg gttttacttg
      181 ctcagggcaa tagggtaaaa tttgctagaa attatacaga tattgatgat aagattttga
      241 aaaaaatggc tcaaagtggt caaactttag aggaaattac ggaattttat atcaaaagtt
      301 atgaagagga tatgagggtt ttaaatgtat tagatcctga ttttaaacct cgtgcaacgc
      361 attatataac agctatgctt gatttgatta aaaagcttgc taaggatggg tttgtttata
      421 ctctagaaga tggaatttat tttgatacaa gtaaagatga aaaatattta agcctatcaa
      481 atcgcaattt agaagaaaat atctctcgtc taagtaatga agtgcaaaaa agaaatgaaa
      541 gcgattttgt gctttggaaa tttgatgaaa atttttacga aagtgaattt ggcaaagggc
      601 gtccaggttg gcatactgaa tgtgttgcta tgattgattc tatttttgaa aatactcttg
      661 atatacatgc tggagggata gatttgcttt ttcctcatca tgaaaatgaa gctgcgcaat
      721 gtcgttgtgg atgtaagaga aaattagcaa atatttggct tcacaatggt tttgtaaaaa
      781 tcgatggcga aaaaatgagt aaaagtttaa ataatagttt ttttataaaa gatgctttaa
      841 aagaatttat gggcgaggct ttaagatttt atcttttgag ttctcattat agatctcatt
      901 ttaattattc tttatcggat ttagaaaatg ctaaaaaacg tttagataaa ttttatcgtc
      961 ttaaaaaaag attggattta ggtgaaattt ctgattttga tgttttaaat gatattgaaa
     1021 taaaaagcga aattgctaag caaattttag agattttaaa tgatgattta aatgtttcta
     1081 aagccttagc tcttttggat gattttatca gtagtgcaaa tttagagttg gataaagaaa
     1141 gcaaaaataa aattttaaaa caaaatatca aagaagcttt aagtgagcta gctaaaattt
     1201 ttggctttgg ttttatggat gcaactttat attttcaatg gggtgtaagc aaagaagaac
     1261 gagaagagat tgaaaagtta attttagaaa gaactgaggc taagaaaaac aaagatttta
     1321 acacagctga tgcaataaga gagcaattaa atagtaaaaa aatcactctt ttagatactc
     1381 caaatggaac aatttgggag aaaataaatg cataatgaga tgaatttaaa agaggtttta
     1441 atacgcttta agccctttta taaaagatat tggaaacaat ttgctatagc tatttttggt
     1501 atgattttag caagcggagg aactgctgga agtttttatg ctttagagcc tattttaaat
     1561 tatattttcg ttgaaaaaaa tgaagcttta ctttatacag tacctttttt gctagtattg
     1621 atgtattttt ttaaaaatct tggaacttat ttacaaagtt tttatgtttc ctttatagga
     1681 acagatatgt taagagtatt gcgtgctagg gttttaaaaa atgttttacg cttggatatg
     1741 gattttttta aacgctatag aagcggagag cttgtaagtc gttgtactaa tgatattaat
     1801 gcacttcaaa gcatagtatc aaacattatt cctgattttt ttagagagct tttaactgct
     1861 ataggactgc ttgcggtagt cttgtatcaa agtcctactt tggctttttt tgctttagtg
     1921 attttgcctt tagctatttt tcctttggta tggtttgcta aaaaacttaa aaaatatgca
     1981 agaaatatac aagaaacaaa ttcggattta ctttcttatt tgggtgaaat tttttcaaat
     2041 attgaattga tcaaagctaa tgataatgaa aaaaaagaaa gtgataaatt tgctaagcat
     2101 aatgatactt tatgtaaatt aaacctaaaa tccgcacgta ttgatgcact tacaagtcct
     2161 ttaatggata tgatgggttc tgttggggtt gctgtggtga ttattgtagg gggtagagag
     2221 gttatcaatg gttctatgag tgtgggaagt tttatcagtt ttgtttcggc actttttgcg
     2281 atatatactc ctttaaagcg tctttcgtct ttatatggaa aacttcaagg tgctgttgcg
     2341 gcaagtgaaa gaacttttta tttattggat ttagaacctc aaattaaagg tggaagcaaa
     2401 gaattaaaaa acattgaaaa aattagcttt gaaaatgttg aatttgctta tgaaaacccg
     2461 cataaaagtg ttttaaaagg cgtaaatttt gattttgtta aagggcaaat gcttgctctt
     2521 gtagggacaa gtgggggtgg taaatcttct attattaatc ttttgatgta tttttatgaa
     2581 aagcaaaaag gtaaaatttt actcaatcaa gaagatatta gcacttttac catagaaagc
     2641 ttacatgcta aaataggact tgtaacgcaa aatatttatc tttttaatga tagttttgct
     2701 gcaaatattg cttatagcga agagttagaa gaagaaaaag tcatccaagc tttaaaattg
     2761 gccaatgctt atgaatttgt taaagaaatg ggcgggattt gggctgaagt gaaagaacat
     2821 ggtaagaact taagtggagg gcaaaaacaa agaatagcaa tcgctagagc tttatataaa
     2881 aatcctgatg tgcttatttt tgatgaagca acttcagctt tggataatga aagtgaaaaa
     2941 gcaatagtta aaactataga aaatttaaaa caagatagat tgattttagt ggttgcacat
     3001 cgtttaagca ctatagaaaa tgcggataaa atagtagtat tggataaggg taaggtattg
     3061 gcaataggta aagatgaaga gcttttgcaa acttgttctt tgtatcaaaa atttaaaagc
     3121 aaagaaaaaa caaagcccag ctttagttaa ttttagttag aatttcaaaa aggattaaaa
     3181 aatggcttat gaaatgataa aacttttact ttttaagtta aaccctgagc atgcacatgc
     3241 tttggttgaa tatagcttaa gggctttaag tgccagtttt ccaggagctt taagtttttt
     3301 agcacacaaa tatatagttg atgatgagag tttaaggcaa aatttacttg gacttgattt
     3361 taataatcct gtaggtttag caggaggctt tgataaaaat gccactatga taagaccttt
     3421 gagtgcttta ggatttggct ttttagaagt gggaactttt actccaaaac ctcaagaagg
     3481 caatgaaaag ccacgtctat ttagacttgt aaaacaagaa agtatacaaa atgctatggg
     3541 ttttaacaac gaaggtgctg aaaagattgc tttaagactt gcaaaaacct atccttttgt
     3601 tttgccttta ggggtaaata tagggaaaaa taaaatcact ccaaatgata aagccttgga
     3661 ggattatttt actttgttta gagattttaa ggatttgtgt gattatttta tcgttaatat
     3721 ctcatctcct aatactaaaa atttaagaga gttgcaaaat gatgattttt taaatacctt
     3781 gcttgaagaa gccaaaaaaa tcacttctaa gcctattttg ataaaaattg ctcctgatat
     3841 gaaaatagat gatgctttaa atttatgtga aaatgccatt aaaaaaggtg cagatgggtt
     3901 tatattagcc aatactagtg ttgattatag tttattagat aataatcgta cttttggtgg
     3961 tattagtgga agactgatta cggaaaaaag tggtattttt ttcaaagaag taactaaaat
     4021 tctttttggc aaaaccttgc ttattgcaag tggagggatt gatagtgctg atattgctta
     4081 tgagcgtatt aaaaatgggg ctaatttggt gcaagtttat acagctttga tttttaaagg
     4141 tccttctttg gtaaaaaata tcaatcaaaa tcttatagag cttttaagaa aagatggttt
     4201 tttacacatt agcgaagctg ttggggtaaa tttaaaatga ttgcttatga aaaaattcaa
     4261 ttaaaaaaca agcttgaagt ttatgctttg cctgtaaata aaaatagcga tgtgattagc
     4321 gttgatattt tttataaagt gggttcaaga aatgagatca tgggaaaaag tggcatagct
     4381 catatgttag aacatttaaa ttttaaaagt actaaaaatt taaaagctgg cgaatttgat
     4441 gagattgtta agggttttgg tggtgtggat aatgcaagca caggttttga ctatactcat
     4501 tattatatta aatgtgcgaa gaaaaattta gataaagctt tagagctttt tgcagaactt
     4561 atggcgaatt taaatttaaa agatgaagaa tttcagcctg aaagagcagt ggttttagaa
     4621 gagcgtagat ggagaacaga taataaccct ttaggatatc tttattttag gctttttaat
     4681 catgcattta tgtatcatcc ttatcattgg actcctatag gtttttttaa ggatatagaa
     4741 aattggagta ttgaagatat taaagaattt cacagtattt attatcaacc taaaaatgcg
     4801 attttacttg taagtggcga tatagaaagt aaggaagttt ttgagctttc aaaaaaacat
     4861 tttgaaaaga ttaaaaatac taagactata cctaaaattc acacaaaaga gcctaagcaa
     4921 gatggagtaa aaagaatata tttacataaa aactcagata ctgaactatt agcccttgct
     4981 tataaaattc caaatttcaa gcacaaagat atacctgctt taaatgcttt atccgagctt
     5041 ttaggaagtg ggaaaagttc tttaatgagt gaaattttga ttg
//
LOCUS       DAPOLW010000115         5070 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.115, whole genome shotgun sequence.
ACCESSION   DAPOLW010000115 DAPOLW010000000
VERSION     DAPOLW010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5070)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5070)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5070
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.115"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(143..568)
                     /locus_tag="ROE18_001457"
     CDS             complement(143..568)
                     /locus_tag="ROE18_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HDX3651624.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNISKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSSNDEHEVNPSIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLSNKIFIQKIKTIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(568..1149)
                     /locus_tag="ROE18_001458"
     CDS             complement(568..1149)
                     /locus_tag="ROE18_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HDX3651625.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMVNGEQGVTLQSIIVHETRTGYAQGFREDAYSELMPKISLQ
                     DIEFSNGIKAEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(1146..1889)
                     /locus_tag="ROE18_001459"
     CDS             complement(1146..1889)
                     /locus_tag="ROE18_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HDX3651626.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENP
                     EFIEFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
                     KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNA
                     QKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
     gene            complement(1892..2854)
                     /gene="moaA"
                     /locus_tag="ROE18_001460"
     CDS             complement(1892..2854)
                     /gene="moaA"
                     /locus_tag="ROE18_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HDX3651627.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMISDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDVLDSVLSGIDEALNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            complement(2867..3382)
                     /locus_tag="ROE18_001461"
     CDS             complement(2867..3382)
                     /locus_tag="ROE18_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651628.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDSEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            complement(3379..3876)
                     /locus_tag="ROE18_001462"
     CDS             complement(3379..3876)
                     /locus_tag="ROE18_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651629.1"
                     /translation="MELALFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENSLDKNKELIPLKQKGVIESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            complement(3867..4751)
                     /locus_tag="ROE18_001463"
     CDS             complement(3867..4751)
                     /locus_tag="ROE18_001463"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate polyprenyltransferase"
                     /protein_id="HDX3651630.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLANDTAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLLVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKIGLHSIPAKFGSKATLFISSF
                     CHILAVLFWLLFVWEVWGVALGKIALIGVIISGIILALEHKIVHKNFAHIDRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
     gene            4822..>5070
                     /locus_tag="ROE18_001464"
     CDS             4822..>5070
                     /locus_tag="ROE18_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HDX3651631.1"
                     /translation="MFFEIALIGTTASGKTYIANTLAREFNAVVLSLDSLCVYKEINI
                     ASAKPSQDDLASIKYFGVNLLSVNEHFNVELFIREYQKA"
BASE COUNT         1729 a          793 c          630 g         1918 t
ORIGIN      
        1 aaaaataatc gtattctgcg aataaaaatg aattcggttt taaaatttcc ttgtgttagt
       61 ataagataaa aaagcattaa aaaaccgctc gcataaagac tataaagatg taaagctaaa
      121 aagaattcgt aactttgatc cattattttc ctttgtttat aaaatcagct aaattttgaa
      181 tttgttcatc acttaaaaaa ctatggtttt tatcttttat cgtttttatt ttttgtataa
      241 aaattttatt gctcaaggtt ttaatggccg tgctgttttt aggttttaat tccccttttt
      301 ctccatgaca agtggcgcat ttttgtttat ataaagagtt gataatacta ggattgactt
      361 catgttcatc atttgaactt tgtgcttcat catctacagg taaaggcagg ttggagtcac
      421 ttaattctgt tttttcatcg ttttgttcta tttggactac ttcttgatct gtattttgag
      481 tcttggaaat atttttttca tcattagaac aggcagataa aactaataaa aaaaaactta
      541 aggcaattaa aattttagct ttttgcatta aatctccttt ggatttataa aaatttcttc
      601 attttttaat ttgttataaa aatctatatc attccattct gctttaatgc cattggaaaa
      661 ttctatgtct tgaagtgaaa tttttggcat tagctcacta taggcatctt ctctaaaacc
      721 ttgtgcatag cctgttcttg tttcatgaac aatgatgctt tgtaaagtca ctccttgttc
      781 tccatttacc atttttgttt gttttaataa agcatctata agtatgaaaa atacacgaca
      841 aaaattttca gcacttacat taacaggcag gcaaatccaa cgacttgaat attttttcat
      901 ttcttctaaa tattttgcgt catcatattt aaaaagagtg atagcatgat caaaactatc
      961 aataatttgg cgtatatagg tttttaaaag tccaaaatca tagaccattc cagcattatc
     1021 taaatatttg ctttcaagta aaacttcaac tttgtaagaa tgtccatgaa tgctactttt
     1081 gcaacgctta gaagaacaaa atctaacaat gtgtgcgttt tcaaattcaa ataattttct
     1141 tataatcata caccctcttt atcgttccaa agacgaatat gaattctatc agaataatta
     1201 taaccattct taatacaaaa ttcagcaatt ttttgagcat tttttttaag gttttgctca
     1261 ttttcaccca taggcataca aaaaatttga tttggagctt cttttagaat ttcattgatt
     1321 tctaaaaatg aattatcaag agtattggca tctaaaacaa atttataaaa actatctttt
     1381 gcgtaatttt taaatgcttt taaagcttta aaatttaatc gtttatcttt ttttatccca
     1441 ctattttgga gtttaacgct taaagcaaaa atacattctt tgtaaaaagg atatctatca
     1501 aaatcaattt ctatgcttcc attgctttca aagtgtattt cgaatttatt ttttaataac
     1561 atttggataa attctataaa ttcaggattt tcataatgga ttaatggctc tccacctgtg
     1621 ataacaacta taggatcaaa gtcttttttt aattttatca ctctttttaa aagttcatta
     1681 gcatttaaag tttcataact ttctttaaaa tcttttgtga aaacagctct tatcgtgtca
     1741 catccaatga gagttttatc gttttttgat atttttacat taaaacctaa acagttgaaa
     1801 ttgcaaccag caaaacgcat aaaaatagct aattttccat tatatttgcc ttctccttga
     1861 atgcttaaga aactttcaac aagttgcaaa attaacctcc agtttgataa aaagcacgag
     1921 atgaggtttc attatcaaca acactccatt tatttttttc tggtttattt cttaatactt
     1981 cttgtaatat ttctacagcg gctttaatat caccttttcg aaccgcttct tttatgctta
     2041 atgcttcatc aaaataaagg caaggtatta acaagccttc agcacttaag cgtatgcgat
     2101 tgcaagaatc gcaaaattca tggctatgag gatctataat tccaaattca taatcatctg
     2161 ccttgtaaat actcacaggt gctttttcat ctttttttat aagttgaatt tgatattttt
     2221 gactcaaaat ttgtataatt tcatctcttt ttaatccttg taatttacca taagcatgag
     2281 tattttccat aaattctata aagcgaattt gagctttttt tgattttgca aattccaaaa
     2341 gagatatcag ttcatcatcg tttaaatttt taagagctac agtattaagt tttactttca
     2401 aatctagatt taaagcttca tcaattccag ataaaacact atctaataca tctttttgcg
     2461 caagagtttt tgcttttttg tgatctaggg tatcaagtga aatattaagt cgtttaagtc
     2521 cagcattttt taggtcttta gcaaagtctt ttagtaaaaa tccatttgta gttatagcaa
     2581 ggtcaatatc gcttttataa tcgctaatca tttttataaa aatacttaaa tcttttctta
     2641 ataaaggttc cccacctgtt atacggattt tttcaattcc ttcgtctata gctgctttaa
     2701 caaataaaaa aagttcttca aagcttaata aattttcttt tggctgataa tcgaaaggaa
     2761 tttttggcat acaataaagg cagcgaaagt tacatctttg tgtaactgaa attctaagat
     2821 aatttatctt tctaccgaat tgatctataa gcatttattt tccattctat tttattaatt
     2881 tcttaaattt taagacaagt tctacatttc cagtgccaat gcgtaaatct ttagcgattt
     2941 gttctatgct ttttccttct ttgaaaagat tttctatttt ttgttcttct gtatcgtaat
     3001 ttggtgtaag tttagccatg ctttgtgctt tttgttccaa atttaaaaga cgattttgtt
     3061 gttcattttg aaaatcttct atgatatgtt ccatagtttt tagtgttctt aaaacaggag
     3121 tgatttttga actgatttgt ttatcaagtt caatcataat ttcttctttt aaaagagagg
     3181 ttttatagtc ttcatcctct tcgctatcat ctttaactcc taattcttta cgaaaataat
     3241 gaagttcttt ggtaatatct tctatcacat tttgaagttt tgctattttt gcattatttt
     3301 ctctttcttt gatattcatg taggctagca ttgcaattaa aagcacaatt ataaaaacta
     3361 aataaagtac atcatcactc attcttggcc tttcttattt cttatcatat ttctttggat
     3421 ttcaacaaca aaagcatcaa aagccatttt gtcttcaggc ttaattttga taatttttgc
     3481 caatgtttga ctttgagctt tgataaaaat agctattttt tgattattta aatcaaatct
     3541 taaataatat tctttatctt cttctaaaat agtatccaaa aaatttagat actcaaaatt
     3601 taaagattct attacccctt tttgcttaag tggtataagt tctttatttt tatctaaaga
     3661 attttcaagt cttaaaatat cttcttttag acttaaaaga agatcaaaaa taattttttc
     3721 accctcgtca aaatcaatgc gtaaagcaag ttttttccat tttaaaattt gagaaattgc
     3781 tccaagtttt aggtattctc caagaaaacg gttattttct atttcacaac attctaaatg
     3841 agcttcaaat cctgctttaa aaagtgctaa ttccataata aatcaatcca aataaaaata
     3901 aaaaagataa tacttaaata accatttaga gtaaaaaatg ctctatcaat atgagcaaaa
     3961 ttcttatgaa caattttatg ttccaaggct aaaataatac cgcttataat taccccaata
     4021 agtgctattt ttccaagtgc tacaccccaa acttcccaca caaaaagaag ccaaaataat
     4081 accgctaaaa tatggcaaaa agatgatata aataaagtag cctttgaacc aaatttagca
     4141 ggaatagagt gaagtcctat ttttttatca tactccatat cttgtaaaga ataaagcaga
     4201 tcaaacccag ctgtccaaaa agttacacct aaacataaaa taacgctata aatgtgaatt
     4261 tcacccataa ttataacact tcctgcaata ggcgcaagtc ctaaacaaaa tcctaaaact
     4321 aaatgtgcta aagaactaaa gcgcttaaaa gctgaataaa tagccaatac caaaagcaca
     4381 ggaaaagaca aataaaaggc caaggtatta ataaaataag aacatgatat aaaaataagt
     4441 gcattaataa tgataaaaat ccatacgctt tttctaccta tttttccact gacattaggg
     4501 cgatttgcac aacgaggatt atccttatct atatcttcat ccattaaacg atttgtagcc
     4561 atggcaaaat ttcttgcact tactgcacaa ataatgccta aaatcaacgc cttaaaacca
     4621 aaccaagcag tgtcatttgc aagttttgat gctacaatca tagaggaaaa taaaaaaggc
     4681 aaagcaaaaa tagaatgctt aaatactaca agttctaaaa tatctttaaa ttttatccag
     4741 aatgtgttca tttttctact ttaaaatatt ttttgctatg attttactaa aatttttata
     4801 aattttagga taaatattaa aatgtttttt gaaatagcat taataggaac aaccgcgagt
     4861 ggaaaaacat acatagccaa tactttagca agagaattta atgctgttgt tttaagtctt
     4921 gatagtcttt gtgtttataa agagattaat atagcaagtg ccaagccttc acaagatgat
     4981 cttgcgagta taaaatactt tggggtaaat ttattgagcg tgaatgaaca ttttaatgtt
     5041 gagttattca taagagaata tcaaaaagca
//
LOCUS       DAPOLW010000116         5037 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.116, whole genome shotgun sequence.
ACCESSION   DAPOLW010000116 DAPOLW010000000
VERSION     DAPOLW010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5037)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5037)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5037
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.116"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..1110
                     /gene="pseA"
                     /locus_tag="ROE18_001465"
     CDS             <1..1110
                     /gene="pseA"
                     /locus_tag="ROE18_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid biosynthesis protein PseA"
                     /protein_id="HDX3651632.1"
                     /translation="PDTKPDLHFDEEGVCDACRSQEAKNQNINWQEREKEFFELIKKY
                     KKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGRKNLDNLNHLGV
                     DLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPLIIWGESPQI
                     EYGGPASSKNKNILGREWLEEFGGLLGNRASDMLGVNGITEKDLFLYTYPSDEELQRV
                     GVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSNHVHDYLKYC
                     KYGFGRATDNACLDIRLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSGFSEEEFQKI
                     VDSFTNKKIFKRDENGKFIRDYDGSLVRKDECVLK"
     gene            1107..1712
                     /gene="hisH"
                     /locus_tag="ROE18_001466"
     CDS             1107..1712
                     /gene="hisH"
                     /locus_tag="ROE18_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDX3651633.1"
                     /translation="MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLP
                     GVGFFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFI
                     EGEVVKFEEDLNLKIPHMGWNELEILKQVPLYQGIDNKSDFYFVHSFYVKCKDEFVSA
                     KAQYGHKFVASLQKDHIFATQFHPEKSQNLGLKLLENFARL"
     gene            1713..2459
                     /gene="hisF"
                     /locus_tag="ROE18_001467"
     CDS             1713..2459
                     /gene="hisF"
                     /locus_tag="ROE18_001467"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDX3651634.1"
                     /translation="MLKTRIIPCVLLKNGQLVKSIEFKDFRTIGHLTSTMRIYNARNV
                     DELIILDIDASKSGEIDFESIEDLAKECFMPLTIGGGIKTLEDIQKILNLGADKISIN
                     SKALEDMDFISKAANRFGSQCIVCSIDVKRKGGQFCVYDRGNLLEKSPLELALEYEKK
                     GAGELLLTSVDFEGRAKGYDLELLKIFQNKLKIPLIINGGLSNPSDGVEALNLGADAL
                     AGAYIFHFSKYTPKDVKEELARQGFAVRLL"
     gene            complement(2424..2897)
                     /gene="pseH"
                     /locus_tag="ROE18_001468"
     CDS             complement(2424..2897)
                     /gene="pseH"
                     /locus_tag="ROE18_001468"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HDX3651635.1"
                     /translation="MIKLKNFTELNSQEIELIFKWRNHPDINQFMKTKYIDFEEHLRF
                     LKKLHQDSSKKYFLVFQDEQIIGVINFVNITTKSCEFGLYAKPNLKGVGQILMNEIIK
                     YAFENLKVNTLKAYVFKDNRKALKLYQQNHFTIYDEDKDFYHICLKQSDCKALPS"
     gene            complement(2894..3718)
                     /gene="pseG"
                     /locus_tag="ROE18_001469"
     CDS             complement(2894..3718)
                     /gene="pseG"
                     /locus_tag="ROE18_001469"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HDX3651636.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELSSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQEAKENREKKYDF
                     FICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHEN
                     IAKLMNESNKLIISASSLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKY"
     gene            complement(3702..4400)
                     /gene="pseF"
                     /locus_tag="ROE18_001470"
     CDS             complement(3702..4400)
                     /gene="pseF"
                     /locus_tag="ROE18_001470"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HDX3651637.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLISYSIENALNSGIFD
                     EVVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAVVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKDILKQAYEKFIQNQSKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            4479..>5037
                     /locus_tag="ROE18_001471"
     CDS             4479..>5037
                     /locus_tag="ROE18_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDX3651638.1"
                     /translation="MLINQTFEIDSCDDVELNIKRTSKLEYRISYDDEKDIKAIVFVI
                     GGYGANANISFLDFDREYIAKNFDVVVVHVFYHCFCARISNNKKYSASISFMEEDLLS
                     LSKILLDFGINPQNLDCKNSTKYYELLIQHIITLKSQGKLAQNYQAKFTSTFIPPNGD
                     YQNYGIMAAIDHINALKDLVKRFPKF"
BASE COUNT         1712 a          670 c          884 g         1771 t
ORIGIN      
        1 ccagatacta agcctgattt acattttgat gaagaaggtg tttgtgatgc ttgtcgttct
       61 caagaagcta aaaatcaaaa tattaattgg caagaaagag aaaaagaatt ttttgagctt
      121 ataaaaaaat acaaaaaaca tcctgtttat gattgtgtta tcggagtaag tggcggaaaa
      181 gattctactt ttcaagtggt taaaatgctc gaacttggac ttaatccttt gtgtgtgtgt
      241 tttgagccta gcgtacctac gaaaataggg cgcaaaaatt tagacaattt aaatcatctt
      301 ggcgtggatt tgatccatat caagcgtgat ccaaaagttt atcaaaaact tgcccgtgaa
      361 gcttttataa gaacagggga taatgagtgg caaaaccatt tgggaatttt tacttctgtt
      421 ccacgcatag cggtaaattt tggagtgcct ttgatcatct ggggagaaag tccgcagata
      481 gagtatggcg gtcctgcgag tagtaaaaat aaaaatattt taggcagaga gtggcttgaa
      541 gaatttggcg ggcttttagg aaatcgtgct tctgatatgc ttggggtaaa tggtatcact
      601 gaaaaagatt tgtttttata tacttatcca agtgatgaag aacttcaaag agtaggggtt
      661 acggggctat ttttagggta ttattttaaa tgggattata aaaaaattct tgaaatttct
      721 aaaaaatatg gttttttaac tctagatcat cctgttgaga ctacttatga aaattttgaa
      781 aatttagatt gttattctaa tcatgtgcat gattatttaa aatactgcaa atacggcttt
      841 ggtagagcaa cagataatgc ttgtttggat attcgtttag gttatatcag ccgtgaagaa
      901 ggggtgcgtt tggtacaaaa atacgatggc aagcccccta aaaaggctat taaaaaatac
      961 cttgaattca gtggttttag cgaggaagaa tttcaaaaaa tagtagattc ttttaccaat
     1021 aaaaaaattt ttaaacgtga tgaaaatggt aaatttataa gagattatga tggttctttg
     1081 gtaagaaaag acgagtgtgt tttaaaatga tagcgctcat tgattacaag gcgggaaatt
     1141 taaactctgt tgctaaggct tttgaaaaaa taggagctat aaatttcata gctaaaaatc
     1201 caaaagattt gcaaaaagca gataaattgc ttttacctgg agtgggattt tttaaagaag
     1261 cgatgaaaaa tttaaaagaa cttggtttta tagaagcttt aaaagagcaa gttttagtac
     1321 aaaaaaaacc tattttaggc atttgtttag gaatgcagct ttttttagaa aggggctatg
     1381 aaggtggagt ttgcgaagga cttggtttta tagaaggtga agtagtcaaa tttgaagagg
     1441 atttaaattt aaaaatccca catatgggtt ggaatgagct tgaaatttta aaacaagttc
     1501 ctttgtatca aggcatagat aataagagtg atttttattt tgtgcattct ttttatgtga
     1561 aatgcaaaga tgagtttgta agtgctaaag cacaatacgg acataaattt gttgcatctt
     1621 tacaaaaaga tcatattttt gctacacaat ttcaccccga aaaaagtcaa aatttaggtt
     1681 taaaactttt agaaaatttt gcaaggcttt aaatgttaaa aactagaatt atcccttgtg
     1741 ttttgttaaa aaacggacaa cttgttaaaa gtatagaatt taaagatttt cgcactatag
     1801 ggcatttaac ttcaacaatg agaatttata atgcacgcaa tgttgatgag cttattatct
     1861 tagatataga tgcttcaaaa agtggagaaa tagattttga aagtatagaa gatcttgcta
     1921 aagaatgttt tatgccttta actataggtg gcgggataaa aacccttgaa gatatacaaa
     1981 agattttaaa tttaggtgcg gataaaattt ctatcaattc taaggcctta gaagatatgg
     2041 attttataag taaagcggct aatcgttttg gttctcaatg tatagtttgt tctatagatg
     2101 ttaaaagaaa aggagggcaa ttttgtgttt atgacagggg aaatttactt gaaaaaagtc
     2161 ctttagaact tgctttagaa tatgaaaaaa aaggagctgg agagcttctt ttaacttctg
     2221 tggattttga aggaagggca aagggttatg atttagaact tttaaagatc tttcaaaata
     2281 aacttaaaat tcctcttatt atcaatggag gacttagcaa tccaagtgat ggagttgagg
     2341 ctttaaattt aggtgctgat gctttagcgg gtgcttatat ttttcatttt tctaagtata
     2401 cccctaaaga tgtaaaagaa gaattagcta ggcaaggctt tgcagtcaga ttgctttagg
     2461 caaatatggt aaaaatcttt atcttcatca taaatagtaa aatgattttg ttgatataat
     2521 tttaaagctt tgcgattgtc tttgaaaaca taagctttaa gagtatttac ttttaagttt
     2581 tcaaaagcgt attttataat ttcattcatt aaaatttgtc ctacgccctt taaattaggt
     2641 tttgcgtaaa gtccaaattc gcaagattta gttgtgatat tgacaaaatt aattacgccg
     2701 ataatctgtt catcttgaaa aactaaaaaa tattttttgc tagaatcttg atgtaatttt
     2761 tttaaaaatc ttaaatgttc ttcaaaatca atatattttg ttttcataaa ttgattgata
     2821 tcggggtgat tgcgccattt aaaaatcagc tctatttctt gagaattaag ttctgtgaaa
     2881 tttttaagtt ttatcaatac ttatactcca cttcataccc ttttttagca agccaagttg
     2941 ctgtagattc ttgattttta acataacaaa tagctttgaa atttgccttt aaaagcaagg
     3001 cttcattgac taaagaactt gcactaatga tgagtttatt gctttcattc atcaattttg
     3061 caatattttc atgatcgata aataatctaa tattgttatg taattttgca aatttttgca
     3121 attttttaag attaggatta gaagagctgg ttgcaatgct gatgattttt gttttaggta
     3181 attcgctagc aatttgtaaa gaaaggtttt ttatatcagt tccacccatg caaatgaaaa
     3241 aatcatattt cttttctcta ttttctttgg cctcttgata aaattcttcc ctgattaaag
     3301 cataagaaaa accacatctt acttcgcatt taaaaggaac taaaccttca taatcacttg
     3361 cttttgcata ggcattgaca ttgagtaaaa tatcacaatg atgaggcttt atttcatcat
     3421 caaagcttag aattttcacc cctgtttcaa gcttgatcag tttttcatca tctacgctga
     3481 tgccatagtg atcaatgata agaagttcaa atttttcttc tttgatgaga ttgataagct
     3541 cgtagatact ttcgctacta agctcataaa caggataagg aatttcatcg atcaaggagc
     3601 cttctaaagg caagcaagca aaacttacat cgctatattg tttagctaag actagatcgc
     3661 gtttaatgtg tccaaagcct atttgactgg agctatcgct tctaaaaagc actttcatga
     3721 tttaccttat aaagtatttt tgcaaattcc aaatcttgta tggtgtctat atcgcaaact
     3781 aaatttcttg gcaatacaaa cacgctagaa tgaggtttaa atataaaatc ttcctcaagc
     3841 caagctttgc ttgtaccaaa ataaaaagct cctgcatcat gataagcttt tgttagatct
     3901 tgtgaacgac ttttataatg tttttcatca aacatataaa cttgattgtt ttcatttaga
     3961 taaaatgccc tttgtatagg atactcaaac tcagtagcag caaataaaaa cttgctttga
     4021 ttttgtataa atttttcata ggcttgtttt aaaatgtctt tatttaacaa aggagcagta
     4081 gcataaaggc agcagacatg atcataaatt tgattttggc tttgtaaaat ttctatggca
     4141 ttttgcacta cagcagtgct tgaagcataa tcatcgctta aatttttatc acgcacaaaa
     4201 ggagcttttg caccgtattt taaggctact tctatgattt cttcatcatc gcttgaaagc
     4261 accacttcat caaaaatacc tgaatttaaa gcattttcta tgctataaga gattaaaggt
     4321 ttacctagaa aatcaatgat attttttcta ggaattcttt ttgatccacc acgagcaggg
     4381 attatgcaaa gatttttcat agttaagcct tgtttttgtg ttttatttta ctaaaattta
     4441 agtataattg tctttaaaat acaataaaag gcttaaaatt gcttataaac caaacctttg
     4501 aaattgattc ttgtgatgat gtagaattaa atataaaaag aactagcaaa cttgaatacc
     4561 gcattagcta tgatgatgaa aaagatatca aagccatagt ttttgtcata ggaggttatg
     4621 gagctaatgc aaatatttct tttttagatt ttgataggga atatattgct aaaaattttg
     4681 atgttgtagt ggtacatgtt ttttatcatt gtttttgtgc aagaatatca aataataaaa
     4741 agtatagtgc ttctattagc ttcatggagg aggatttgtt aagtctatct aagattttgt
     4801 tagattttgg cattaatcca cagaatcttg attgtaaaaa ttctaccaag tattatgaat
     4861 tgcttattca gcatattatt actttaaaat cacaaggaaa attagcgcaa aattatcaag
     4921 cgaaatttac ttcaactttt atcccaccta atggagatta tcaaaactat ggcattatgg
     4981 cagctattga tcatatcaat gctttaaaag atttagttaa acgctttcca aaatttg
//
LOCUS       DAPOLW010000117         5006 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.117, whole genome shotgun sequence.
ACCESSION   DAPOLW010000117 DAPOLW010000000
VERSION     DAPOLW010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5006)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5006)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5006
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.117"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(189..1397)
                     /locus_tag="ROE18_001472"
     CDS             complement(189..1397)
                     /locus_tag="ROE18_001472"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HDX3651639.1"
                     /translation="MKISLFGYGKTTRAIAENLVDKFGPFDIYDDHFTETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPPKHKLIQKAKNLQSEYDFFYDIMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVMGGNVGTPLAELNPYAKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVVILPKIYANTPTKAHKISYEDEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALAIEKILLDTLSYKLLNSFVMEKNKLEELKDSQNR
                     LWVNDTKATNESAVMAALSRYKDKKIHLIIGGDDKGVDLSNLFDFMKGFDIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYAERG
                     KVFKECVNKI"
     gene            complement(1397..2458)
                     /locus_tag="ROE18_001473"
     CDS             complement(1397..2458)
                     /locus_tag="ROE18_001473"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HDX3651640.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKA
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLFCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKDNHSGLSPRMKLLAQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIAFWILVLISSSNAVNLTDGLDGLATVPGIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALMGFLWYNCYPAQVFMGDSGSLALGGFIGFLAVI
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWVENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            2538..4016
                     /locus_tag="ROE18_001474"
     CDS             2538..4016
                     /locus_tag="ROE18_001474"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HDX3651641.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGSGRIIYQNLVRINKAIENKELEKNENLKKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDVSPKSGLNFIKD
                     LKEFCENLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAAQNENYKGMREEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFENL
                     LTMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKVKTYDEKPQMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNATIKAVEAVDTCLGEILECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQARGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            4088..4831
                     /gene="fabG"
                     /locus_tag="ROE18_001475"
     CDS             4088..4831
                     /gene="fabG"
                     /locus_tag="ROE18_001475"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDX3651642.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKTIVESDGELSYLVNNAGVTNDKLALRM
                     KLEDFSGVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSNEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            4838..>5006
                     /locus_tag="ROE18_001476"
     CDS             4838..>5006
                     /locus_tag="ROE18_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HDX3651643.1"
                     /translation="MMDLKEIAQFLDDNAPAFLATLGTCGNPRVRPIQSPLLVGDKIY
                     FCTANTKGLFKH"
BASE COUNT         1782 a          691 c          913 g         1620 t
ORIGIN      
        1 tgtcttcatt acttacttta tatataaatc ctatgtttat ttttattgtt gttttagatg
       61 atacttagaa tcgtgtttaa aaaagagttt gctgctggtt agggttttta gagagaatag
      121 ggtgttttta ggggtttgaa aatactagaa ggataaaatt taaaattttc tatgaaaagt
      181 aaaataaatt aaattttatt cacacattct ttaaagactt ttccacgctc tgcgtaagag
      241 ttgaactgat ctaaacttgc acaagcggga cttaaaagag ctacttcatt gactcttaag
      301 tgatttgaaa tttcatttac agctttagat aaaacttcgc atttataggc tttcaaattc
      361 gctttttttg cataatcaag cattttttcg gtactaatac ctatagcata gagttctata
      421 tcaaatcctt tcataaaatc aaataaattg ctaagatcta cacccttatc atctccccct
      481 atgataagat ggattttttt atctttatag cgactaagtg cagccattac agcactttca
      541 tttgtagctt tagtgtcatt tacccaaagc ctattttgac tgtctttaag ctcttcgagt
      601 ttattttttt ccattacaaa gctatttaaa agcttatagc ttaaagtatc aagtaaaatt
      661 ttttctatag ctaaagccat gatagcatcg agtaaaaaag gacttttaaa ggaaattttt
      721 tccgtatcaa tgccaaattt aacagctaga tctttttcat cttcatagct tattttatga
      781 gcttttgttg gagtatttgc ataaatttta ggcagtatta ctacatcaca ttcattcatt
      841 ctttttaaaa cgcttagctt atcttgaaca taattatcaa aacttccatg ccaagaaaga
      901 tgatcaggac ttataggtaa aagtgcataa atttcaggtt tagctttatg agtgtagtgt
      961 agggtaaaag atgaagtttc aagtatccaa agttttgcat aaggattaag ctctgctaaa
     1021 ggagttccaa catttccacc cataacagca ccaatgtgtg ataataaatg tgtagccatt
     1081 tgtgtggtgg tggttttgcc attggttccg cttatccaaa cggattttgg catgatatca
     1141 taaaaaaagt catattcgct ttgtaaattt tttgcttttt gaatgagttt gtgctttggt
     1201 ggaaaacctg gactaggaat ttcaatatcg cttaaattat catcaaaatc attaggattt
     1261 aaaagtaaat ttcctagtgt atcttttttt gtttctgtaa aatgatcatc ataaatatca
     1321 aaaggtccaa atttatctac taaattttca gcaatagcac gtgtggtttt tccgtatcca
     1381 aaaagtgaaa ttttcattat cttagcttta ttgatgcaag tgcaagcaaa tttgaaagta
     1441 aggctatcat ccaaaaacgc actataattt tattttccac ccagccaact ttttcaaaat
     1501 gatgatgaat aggcgccatt ttaaatactc ttttattaaa aattttaaaa cttccaactt
     1561 gtaaaattac agaaacagtt tcaagaacaa aaacaaaacc tatgagtaaa agtaaaattt
     1621 catttttgct aataacggct aaaaatccta taaagccacc taaagctaaa cttccactat
     1681 ctcccataaa aacttgtgca ggataacagt tgtaccataa aaatcccatt aaagcaccaa
     1741 ttagcgctgc acaaataatc actacttcac caagtccttg aatttttggc aaaagtagat
     1801 attcactata atttaaattt ccactcaaat ataagaatat ccctaaagta gataaagaaa
     1861 aaatgcctgg aactgtagct aagccatcaa gtccatcggt taaatttaca gcattagagc
     1921 tagaaattaa aaccaaaatc caaaaagcaa tggcaaaaat ttccatatca aaaagagggt
     1981 gtttataaaa aggtataaaa agttccgtgc taagctctga actaaaatat aaaggtaaga
     2041 tgcagataag tccagcgatg atttgtgcta aaagcttcat tcttggacta agtcctgaat
     2101 gattatcttt ttttagaact ttgcctaaat catctatgag tcctatcaaa caaaaaagta
     2161 tcaaacaaag taaagcactt atagcaaaaa tattatcaaa tttgatacaa aataaacttg
     2221 cgattactgc agaactgatg aaaataagcc cacccatggt tggagtatgg catttggttt
     2281 tatgagtttc tggggcgtat tcgtaaatag gttgactagc atttttagct tttgcccaag
     2341 taataaattt aggcattaaa aataaagaca aacataaagc gataaaaaat gcaaatcctg
     2401 cacgcacact aatataagta aaaaaagcat aatgacttaa atctgaaaga taatacaaaa
     2461 cctagccttc tttttggttt ttaaaagttt aattttagta aaatctaacc aaaaaaattc
     2521 ttataaaaga gagaaaaatg aagcaaaaat gcgttttaat tattacagat ggaatagggt
     2581 ataataagaa tagtaagttt aatgcttttg aagcagctaa aaaaccaagt tatgaaaagc
     2641 tttttaagga agtcccaaat tctttactaa aaacgagtgg tttagctgta ggtttgccag
     2701 aagggcagat gggaaatagt gaagtagggc atatgtgtat aggaagtggg cgtattattt
     2761 atcaaaattt agtgcgtatt aataaagcca ttgaaaacaa agaacttgaa aaaaatgaga
     2821 atttaaaaaa acttttagca aaatgtaaaa gagtgcatat tatagggctt tatagtgatg
     2881 gcggggtaca ttctatggat acgcatttta aagccatgct tgaaatttgt gcgaaaaatg
     2941 gcaatgaagt ttttgctcac gcaatcactg atgggcgtga tgtaagtcca aaaagtggct
     3001 taaatttcat aaaagattta aaagaatttt gtgaaaactt aggcgtgcat tttgctacgc
     3061 tttgtgggcg tttttatgct atggatagag ataagcgttg ggatagggta aaagagtatt
     3121 atgagtgctt gttaggtaag gcttataaag tgccaaattt attagaatac ctacaaaaat
     3181 cttacgatga aaatgttact gatgagttta tcaaagcagc tcaaaatgag aattacaagg
     3241 gcatgagaga agaagatggc attatcttta tcaactttag aaatgataga atgaaacaac
     3301 ttgttgaagt gttaaattct aaggatttta aagagtttga acgcgaaaaa atctttgaaa
     3361 atttacttac tatgagtgtt tatgatgata aatttaaact ccctgtgctt tttgaaaaag
     3421 aaaaaattga aaatacttta gcgcaagtga tttctaaagc agggcttagt cagcttcata
     3481 ccgcagaaac cgaaaaatac gcccatgtaa ctttcttttt taatggcgga aaagaagagc
     3541 ttttagaaaa tgaaacaagg gttttaatcc caagccccaa ggtaaaaact tatgatgaaa
     3601 aaccccaaat gagtgctttt gaagtgtgtg atgcagtgaa aaaaggcata gaaaagggtg
     3661 aggattttat agtggtaaat tttgcaaatg gagatatggt tggacataca ggtgatttta
     3721 atgctactat aaaggctgtt gaagcggtgg atacttgttt aggcgagatt ttagaatgtg
     3781 caaaaaagca tgattatgct tttatcatta caagtgatca tggaaattgc gaggctatgc
     3841 aagatgaaaa aggaaatttg cttaccaatc acaccacttt tgatgttttt gtttttgtgc
     3901 aagcaagggg agtttcaaag attaaagata atatggggct gagtaatata gctgcaagcg
     3961 tgcttaaaat tttagactta gaaattccaa aagaaatgaa tgaggcttta ttttagtttg
     4021 tttgcctttt ttataagaaa tttgttaaga ttgcaatttt taaaattaaa cttattaagg
     4081 atagataatg aaatttagtg gaaaaaatgt tttaattact ggagcaagta agggaatagg
     4141 tgcttctatc gcaaaaactt tggcaggttt tgggcttaaa gtttggatca attatcgttc
     4201 aaaacctgaa cttgcagatg ctttaaaaga tgaaattatt gcaagtggtg gtgttgctgc
     4261 tgtgattaaa tttgatgcaa gcaaagaaga tgagtttgaa aacggcgtaa aaactatagt
     4321 tgagagtgat ggagagttaa gttatcttgt aaataacgca ggcgttacaa atgataaact
     4381 tgctttaaga atgaaattag aggactttag tggcgttgtg gatacgaatt taagctcagc
     4441 ttttttaggt tgtagagaag ctttaaaaac catgagtaaa aaacgctttg gtgctgttgt
     4501 aaatatcgct tctattgtcg gagaaatggg caatgctggg caagtaaatt attctgctag
     4561 taagggtgga atgatagcta tgactaaatc ttttgctaaa gaaggagcaa gtagaaattt
     4621 acgctttaat tgcgtaactc caggttttat aaaaagcgat atgactgaag ttttaagcaa
     4681 tgaaatcaaa caaacctatc aagataatat ccctttaaaa cgctttgcag agcctgaaga
     4741 agtagctaat tgtgtagcgt ttttacttag tgattatgcc tcttatgtga caggcgatgt
     4801 gcttaagatc aatggtggtt tatatatgta aggaaaaatg atggatttaa aagaaatagc
     4861 acaattttta gatgataatg caccagcatt tttagccact ttaggaactt gtggaaatcc
     4921 tagagtgcgt cctatacaaa gtccattgct tgtgggagat aaaatttatt tttgcacagc
     4981 aaatacaaaa ggacttttta agcata
//
LOCUS       DAPOLW010000118         4807 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.118, whole genome shotgun sequence.
ACCESSION   DAPOLW010000118 DAPOLW010000000
VERSION     DAPOLW010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4807
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.118"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            95..1168
                     /gene="ispG"
                     /locus_tag="ROE18_001477"
                     /gene_synonym="gcpE"
     CDS             95..1168
                     /gene="ispG"
                     /locus_tag="ROE18_001477"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HDX3651644.1"
                     /translation="MEYKRFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQI
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRI
                     NPGNIGSKENIKEVVKACKERGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ESELVDRFLAEVEDEVKSRVVKE"
     gene            complement(1199..1897)
                     /gene="flgH"
                     /locus_tag="ROE18_001478"
     CDS             complement(1199..1897)
                     /gene="flgH"
                     /locus_tag="ROE18_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HDX3651645.1"
                     /translation="MKKVLFYVLPFVFFGCSATVDPQISMKPPAYVEELAPKQSNNIE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
     gene            1987..3492
                     /gene="pta"
                     /locus_tag="ROE18_001479"
     CDS             1987..3492
                     /gene="pta"
                     /locus_tag="ROE18_001479"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HDX3651646.1"
                     /translation="MMANLYLMRSRSDELNTIISTNLLKNYSKIYKNIAIYCPVIYIH
                     RVPVLQGWLEEFNINQTVKSAYGFTFREAMEEFSKDPHNFFNVILEEYEELKRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINDEDKLIAQKYFDHALDGRNYVLINE
                     NFNFEEVQKLKEYDFITPHRFKYELIKQSVKNKKTVVLPESNDERILKAAEILLKSKV
                     VDLILLGDEEKIKQDATRLSLDLSAMQIMNPLNSEYNQEFTSILYEARKSKGMSLEEA
                     RKLVQDKTYFGTLLIHTGKADAMVSGASTTTAETIRPALQLIKTKEGISSVSGIFFMG
                     LEDQVLAFADCAVNPSPSAEQLATSAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESV
                     DLVKEALKIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            3506..4696
                     /locus_tag="ROE18_001480"
     CDS             3506..4696
                     /locus_tag="ROE18_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HDX3651647.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKIVKASGLVEKIGEQNSKVVLKNT
                     LNNESFERELTINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANAAIFDTAFHRTMPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAYVSSRAAKFLQKDQNELNVISAHLGNGASVCAIEKG
                     KSMDTSMGFTPLEGLIMGTRCGDLDPAILPFVSHLKGLTIEEIDTLMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGSYFAVLPKTDAIIFTGGIGENDSL
                     VRQKVCERLAHLGIELDFELNKQRISGERMINHANSKVKVLVIPTDEELEIARITEEL
                     IGKN"
BASE COUNT         1642 a          654 c          904 g         1607 t
ORIGIN      
        1 tgtcatgaaa tttaaatata ttatcaaaaa taaactttaa ttaaagcaat aaaaagttaa
       61 aatttgatat taaaattttt caaagagtga agttatggag tataaaagat ttaaaaccag
      121 acaaatcaaa gtaggaaatg ttttaatagg cggtgatgca cccatttcag ttcaatctat
      181 gctttttact aaaacaagag atatagaagg ttctttagaa caaatcaatc gtctttattt
      241 tgcaggagca aacatagtgc gtttggcgtg cttggatatg gctgatgcaa gggctttaaa
      301 agagattaaa gctaaaagtc ctctaccttt aatcgtagat attcatttta atcataattt
      361 ggctgtatat tgtgctgaat ttatcgatgg cgtgcgtata aatcctggca atataggctc
      421 taaagaaaat atcaaagaag tggtaaaagc atgtaaagaa cggggtatcc ctatacgtat
      481 cggtgtaaat cacggctcca tagaaaaaca atttagcgat aaatttggct atggtgtcga
      541 tgctatgcta gaaagtgcga tgtataatat caagctttta gaggatttag acttttttga
      601 tattaaaatt tccatgaaga cttcagatgc tcaaaaaact atagaagctt atgagagatt
      661 aagaccgctt tgtgattatc cttttcactt aggggtaact gaagcaggaa ctaaatttca
      721 tagcactgta aaaagttcta tagctttagg aaatttactt cttaaaggta taggcgatac
      781 tatgcgtgtt tctatgactg gcgaacttga agaagaaatt cgtgtagcaa gggcgatttt
      841 acaagatagc ggagtgcaaa aaagcggagt aaatattatt tcatgtccaa cttgcggtag
      901 gattcaaagt gatttgttaa gtgcgattaa aatcgtagag gaaaaaacca agcatataaa
      961 agaaccttta aacatcagtg tcatgggttg tgtggtaaat gctttaggcg aagctaaggg
     1021 cgctgatgtg gctatagcct ttgggaaaaa tcaaggactt gtcataagac atggtgaagt
     1081 tgtagctaaa ttaaaagaaa gtgaacttgt agatagattt ttagctgaag ttgaagatga
     1141 ggttaaaagt agggttgtaa aagaataaaa gcctaaaagc aaggttaaac cttgcttttt
     1201 agaatggcca tatcgcttct ataactttac taccccaagg ttttcttgtg cttctatcca
     1261 cttctccttc tgttttatat agaattttag catctgctat atatttacta tctatagtat
     1321 tgtcttgacc gatgtcataa ggacgaataa caccgcttaa ttgtatgatt tgcttctctc
     1381 cgttgattaa aagctctctt gaaccttcga taaaataatt accatttgat aaaattttaa
     1441 ttacacgtgt tgaaattgta gtattgaaac tttcatttct gctttgcgag cctgttcctg
     1501 tgtagttgtt tgaactattg gtttgaaagc ctatattaga ataagcattg actttattaa
     1561 gagcattagc taccactcct gaacttcctg ttaaagcacc tccgcctaaa tttgaggtat
     1621 tagttctgct tgttgcttta ttagcttgtg tgctttgagt ggtactttct tgtataacaa
     1681 ctgtaactaa atcatttaca ttcatagctt ttttatctga aaataaagga ttatctcctt
     1741 tgccaaaaag cgatcctggc gcactttcta tattattact ttgttttggt gcaagttctt
     1801 ctacataagc aggtggtttc attgaaattt gcggatcaac cgttgcagaa caaccaaaaa
     1861 acacaaacgg taacacataa aataaaactt ttttcatttt cgtcctttaa aatatgaatt
     1921 tttatttttc tttgttaaaa ttagaaaaag caaagagtgt tccacattta taaattcaag
     1981 gagaaaatga tggcaaatct ttatttgatg agatctagaa gtgatgagtt aaatactatt
     2041 attagtacaa atttgcttaa aaattatagc aaaatttaca aaaatatcgc aatttattgc
     2101 cctgtgatat acatacatcg cgtccctgtt ttgcagggtt ggttggaaga atttaatatc
     2161 aatcaaaccg taaaaagcgc ctatggtttt acctttagag aggcaatgga ggaatttagc
     2221 aaagatcctc ataatttttt taatgttatt ttagaagaat acgaagagtt aaaacgcaaa
     2281 tacgattttg tgcttgtaaa tagtttttgc gaatttggaa tacttgatgg atttgatctt
     2341 agtataaaat tggccaaaaa tcttaatacc cctatcgctg ctattattaa cgatgaagat
     2401 aaacttatag ctcaaaaata tttcgatcat gccctagatg gtcgtaatta tgttttgatt
     2461 aatgaaaatt ttaattttga agaagtgcaa aagcttaaag agtatgattt tataactccg
     2521 catcgtttta aatatgaatt gattaaacaa agcgtaaaaa ataaaaaaac cgttgtttta
     2581 ccagaaagta atgatgagag aattttaaaa gctgctgaaa ttttattaaa aagtaaagtt
     2641 gttgatctta ttttattggg cgatgaagaa aaaatcaaac aagatgctac tagattaagt
     2701 cttgatttaa gtgctatgca aattatgaat ccacttaatt cagaatataa tcaagaattt
     2761 acttctattc tttatgaagc aagaaaatct aaaggcatga gtttagaaga ggctaggaag
     2821 ctagttcagg ataaaactta ttttggaact ttgcttatac atactggaaa agctgatgct
     2881 atggttagtg gagcatcaac tactacggct gaaacgattc gccctgcatt acagcttatt
     2941 aaaactaaag aaggtattag ttccgtttca ggaattttct ttatgggact tgaagatcaa
     3001 gttttagctt ttgctgattg tgctgtaaat ccaagcccaa gtgctgagca acttgcaact
     3061 agtgcctatg taagtgctat gactgctaaa tcttttggac ttgaaccaag aatagctttg
     3121 ctttcttatt ctagtggtga tagcggtaaa ggagaaagcg tagatcttgt aaaagaagca
     3181 ttaaagattg ctaaagaaaa atatcctgag ttgaatatag atggtcctat gcagtttgac
     3241 tgcgcttatg atccaaaaac tgcagcaaag aaaatgccaa attctaagat agcaggtcat
     3301 gcaaatgtgt atatttttcc tgatcttaac gcagcaaata tttgttacaa agcagttcaa
     3361 agaactgcta atgctttagc aatcggtcct attttgcaag gtcttaaaaa acctgtcaat
     3421 gatttaagtc gtggatgttt ggtagatgat attgtagata ccgtaatttt aagtgcaata
     3481 caagctcaat agaaaggaat gataaatgaa aattttggtt ttaaattcag gttcttcatc
     3541 gattaaattt aaattttttg ataataaaat cgttaaagcc agtggattgg tagaaaaaat
     3601 tggagagcaa aattcaaagg ttgtattaaa aaatacttta aataatgaaa gttttgaaag
     3661 agaattaaca ataaataatc acgaagaagg ccttagtata gttaatgagc tttttaaaga
     3721 atcaggaatt ttagcagatt taaatgcact tgatggctgc ggtcatcgta tagttcatgg
     3781 gggaagaaat ttaagcgagc attgtttagt ggatgattat gttcttaaag agatagatag
     3841 ggttagtatt tttgctcctt tgcataatcc tgcgcattta gcaggtataa aaacaatgat
     3901 caaagctgca cctagtgttg ctaatgcagc tatttttgat acagcttttc atcgcactat
     3961 gcctgatttt gcttatatgt atgctttgcc ttatgatttt tatgataagc ataatattag
     4021 aagatatggt tttcatggga cttctcatgc ttatgttagt tctagagcgg caaaatttct
     4081 tcaaaaagat caaaatgaat taaatgtcat ctctgctcat cttggaaatg gtgcaagtgt
     4141 atgtgctata gaaaaaggta agagtatgga tacttctatg ggctttactc cacttgaagg
     4201 acttattatg ggaacgcgtt gtggagattt agaccctgct attttacctt ttgttagtca
     4261 tcttaagggt ttaactatag aagaaataga tacactgatg aataaaaaaa gtggagtata
     4321 tggaatttgc ggttataatg attttagaga tatagaaaga gagatagaac aaggtaatga
     4381 taaagcacgc ttggctcttg atatgttttg ttatcgtctt gttaaatata taggatccta
     4441 ctttgctgtg ttgccaaaaa ccgatgctat tatttttaca ggtggtatag gagaaaatga
     4501 tagtttggtt cgacaaaaag tatgcgagag attagctcat cttggtatcg agttagattt
     4561 tgaacttaac aaacaaagga tttcgggcga aagaatgata aatcatgcaa attctaaagt
     4621 taaagtgctt gttattccta cagatgaaga attagaaatc gctagaatca cagaagaact
     4681 tatcggtaaa aattaaattt taaaaactat ataaatcttt catttatata gtttttagca
     4741 aggttatata ttcactttgc ttttcattta aaactttaaa agttcttatc atgtaagaaa
     4801 attcatc
//
LOCUS       DAPOLW010000119         4806 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.119, whole genome shotgun sequence.
ACCESSION   DAPOLW010000119 DAPOLW010000000
VERSION     DAPOLW010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4806)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4806)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4806
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.119"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(23..2788)
                     /locus_tag="ROE18_001481"
     CDS             complement(23..2788)
                     /locus_tag="ROE18_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HDX3651648.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDAKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNRPKILNPTKAYINKAYSELRSYCLGLTHVKNYKNLCD
                     NFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAKRMELINALNTYAIELENY
                     KIANLMNLLNHYSEAKNIFHKDKNTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHL
                     LIDEFQDTSVIQYQILRPLIAELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     LKQEFSQIKSDNLNTNYRSKELLVDFVNETFKEKIKDYKEQFALESKKGGFVRIVESK
                     EQKVKNQAQEIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLREQNI
                     PAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKITLDFSKNAME
                     NVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCALKIVSEQNMGISIMSVHK
                     SKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKEPIYTLFKEN
                     ITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQERGFLE
                     SKEQILSVKKESIQTLQKFEKITLQEIQSEERLDSKELYFGNAFHFFMQNLKLPKGEN
                     FQILTQRCKSKFRHFLDESDFEKLFKRIEILLKNIQFQNLIGDGKLLKEQALSFNGEI
                     KQLDLLALKDEEAFIIDYKTGLAMQDKHKEQVGTYKIAISEILQKDKVRAFIVYCLEN
                     EIQILEI"
     gene            complement(2785..>4806)
                     /locus_tag="ROE18_001482"
     CDS             complement(2785..>4806)
                     /locus_tag="ROE18_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HDX3651649.1"
                     /translation="LEILDEVYKNYLALLEKNSFYDDLSLPKNYTLNKDFLDEYEAIV
                     YDLQGFLSKFEENLLSEISQIKEVVLSFKTSKFNLEYLLKLDFLKIFDLKINTHYEIN
                     LSKQEILKEEIFKTKNSKIKLKSFELRALQCAFVMDEISHFVRKGLKPENIAVITPDE
                     SFCEFLRLFDKDNMLNFASGISIKESLFYQKFQALYESASSASFIYKNQEDYFEDTQM
                     IFDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFEKLLALFLENEKQELIYLIRKELYFI
                     KDLLKNQSLTLKELIHLFFMQISQLSLSDVGGGKVTVMGLLESRGLCFDGVILVDFNE
                     EFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNALEVSICFVENEEKS
                     KSRFLDELDFDFFYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFS
                     RFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHKMLEIYYKNYANNNFDIK
                     VFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEHFSKGFYVAHTELELNNILKLG
                     TDSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSYQLAFYQALYDENASVGFYDLNSM
                     QILHQKAKSLDELRERLKDLVLMSKEEIEFENEQDEYCPYKLIYKKELK"
BASE COUNT         1700 a          791 c          472 g         1843 t
ORIGIN      
        1 ttaatttaag taaaaattaa gtttatattt ccaaaatttg aatttcattt tccaaacaat
       61 aaactataaa agcacgcact ttatcttttt gcaaaatttc actaatggcg atcttataag
      121 ttcctacctg ctctttatgt ttatcttgca tagcaagacc tgttttataa tcaattataa
      181 aagcttcttc atcttttaaa gcaagcaagt ctaattgttt aatttctcca ttaaaactca
      241 aagcttgttc ttttaaaagc tttccatcac caatcaaatt ttgaaattga atatttttaa
      301 gtaaaatttc aattctttta aaaagctttt caaaatcact ctcatctaaa aaatgtctaa
      361 atttactctt gcatctttga gtaagtattt gaaaattttc acccttagga agttttaaat
      421 tttgcataaa aaagtgaaaa gcatttccaa aatatagttc tttactatca agcctttctt
      481 cactttgaat ttcttgcaag gtaatttttt caaatttttg caaagtttga atgctttctt
      541 ttttaacgct taaaatttgt tctttgcttt ctaaaaaacc tctctcttga gaatgtatat
      601 ttaaaaatcc ccccttaaaa taacttggat aatttccatt tacactttct tcatttcttt
      661 ttatgatgat caaactttcc ttagctcttg taaaagccac ataaagttta ttaatatcat
      721 cttcataatt tgctcttgta atattttctt taaaaagagt ataaataggc tctttagtaa
      781 gctctcgaat tttatcttta atatggagtt gccaaccttg attgatatca tattcaagca
      841 tgatatcttc attgtttgaa ttgtttttag ataaactatc aagtaaaatc acatgatcaa
      901 attccaaacc cttagattta tgcacactca taatactaat tcccatattt tgttcgctta
      961 ctattttcaa agcacaaggc tcaaataaaa gctttaaaaa attctcctta gttttagcat
     1021 attcgataaa ttgtattaaa gcgatatcat ttaaatcaag ttttaattct tttattaaaa
     1081 aaagtacatt ttccatagca ttttttgaaa aatcaagggt aatttttctc ggctcaaaac
     1141 ctaaaagttc ctttaaaaat accaagtaaa actcatcacc aaaaatacaa tatttagcat
     1201 attctaaaac aagtcttaca cttgctttat tttcaagtaa aacattgctt tgagtaaatg
     1261 caggaatatt ttgctctctt aaaaaatcca aaaccatatc tgcatcacta tttttccaac
     1321 acaaaataca aatatcatca taagaaatat ttttagatct taaaaaatta atttgctcaa
     1381 ataaagtttc taaagtcttt tccttaattt cttgggcttg gtttttaacc ttttgttcct
     1441 tagactccac aatacgcaca aaaccgcctt ttttactttc taaggcaaat tgttctttat
     1501 aatctttgat tttttcttta aaagtttcat taacaaaatc aaccaaaagc tctttagaac
     1561 gataattagt atttaaatta tcacttttaa tttgactaaa ttcttgtttt aacaaatcaa
     1621 ataattcttt ttttccttta cgaaagcgat aaatactttg ttttttatct cctacataaa
     1681 aaaaagtgcg atttttctta accccttctc ctgaaacaag ctcagcgatc aaagggcgta
     1741 aaatttgata ttggatcacg cttgtatctt gaaattcatc aataagcaaa tgcgaaataa
     1801 aaccatctaa acgaaaataa atcatatcct taaattcact ggttattaac tcataaactt
     1861 ttttactcac atcttggaaa tttaaggtat ttttatcttt atgaaatata tttttagctt
     1921 cactataatg atttaaaaga ttcattaaat tagcaatttt ataattttca agctctatgg
     1981 cataggtatt taaagcattt ataagctcca ttctttttgc actaaaatgc aggttagtac
     2041 tttctaaatc ttgtaaatat tttgtacttt caaattttgt cataaaactt gattgcataa
     2101 acacggataa atctaaaact tcacttttga aattgtcaca caaattttta taatttttta
     2161 catgagtaag acccaaacaa taacttctta actcactata agctttattg atataagctt
     2221 tagttggatt tagaatttta ggacgatttt gaaaataagc attctcataa aatttttcaa
     2281 gctcgttaaa aaaattttct ttctcatcaa ctaaattaat ataataagcc aaatctttta
     2341 attcatcttt tttaagaagt tttaaaaaaa tctctcttac atcaagcctc tcttcactca
     2401 ttgtaaaatc actacttaag cccaaattta aagcaaaaac acgcaaaatt tttccgaaaa
     2461 aagcatcaaa agtactgatt tttaactctg ttcttaaaaa ttcttctttt ttagcatctc
     2521 ttaaagaaat aagctcttct ttatctttac ctaaaagctt gcaaagttca ttgcattcac
     2581 tggttttatt ttctttttct aagtttaaaa aagtctcaat aattcttttt tgcatttcat
     2641 tagcagcttt tttggtaaaa gtcaaagcta aaatttcatt aatcctagct ccttttaaaa
     2701 taagtgctac aaaacgcaca ctcagggcaa aggtttttcc gcttcctgca ctcgcttcta
     2761 atgctaaaaa aggctcaaat tgactcattt taattccttt ttataaatga gtttataagg
     2821 acaatactca tcttgttcat tttcaaactc tatttcttcc ttactcataa gaactaaatc
     2881 tttaagtctt tctcttagct catctaaact tttggctttt tgatgcaata tttgcatact
     2941 atttaaatca taaaaaccca cgcttgcatt ttcatcatat aaagcttggt aaaaagcaag
     3001 ttgataagaa ttacttggca cttttccact tttataatca ataatcaaat taccttcttt
     3061 tgaactatcg atacgatcta tagtaccctt aagttttata ctatctgttc cgagctttaa
     3121 aatattgttt aactcaagct ctgtatgtgc gacataaaag ccttttgaaa aatgctcttt
     3181 ttcattttta gcaaattgta taaattttaa tttaaatact tcaagatcaa gttcactgat
     3241 attgtatttt tgatattctt tatccaataa atttgcaaaa acttttatat caaaattatt
     3301 atttgcataa tttttataat aaatttcaag cattttatgg ataaaatttc cttgattttt
     3361 cgctttgctt tcctcgctta aaaccctagg ttctgctaaa tttaaaatat aacgataata
     3421 ataagttctt ttttgatttt ccaataaatt aaaacgacta aaagaaagcg gaaactcgaa
     3481 aggattatgc tttaaaatag gagcttttat aggagttaga ttaggtttta tgccttcata
     3541 gtctaatttt aaagcattaa gataagcttt ttggtggata tgagtttcat aaaaaaagtc
     3601 aaaatcaagt tcatctaaaa aacgtgattt gcttttttct tcattttcca caaagcaaat
     3661 acttacttct aaagcattct tcatcaagct ttcataataa aatctttgta aattttctct
     3721 tctatcatag ctaatcaatc ctgctttttt acgcacttca ttgtttaaaa aaagctcatt
     3781 aacacttctt ttaggaataa attcttcatt aaaatcaacc aaaatcactc catcaaaaca
     3841 aagcccacga ctttctaaaa gtcccattac cgtaacctta cctccaccta catcactaag
     3901 ggaaagttgt gaaatttgca tgaaaaaaag atggatcaac tctttaagag ttaaagactg
     3961 atttttcaat aaatctttaa taaaataaag ttcttttcgt atcaaataaa taagctcttg
     4021 cttttcattt tctaaaaaca aagcaagtaa tttttcaaaa tattcaaaat cacatttctc
     4081 atcaaaatac tttttaaact ctataaaatc aagttttaaa gaatgtaaaa gcgtattgtg
     4141 ataatcaaaa atcatctgcg tgtcttcaaa ataatcctct tgatttttat aaataaaaga
     4201 agcactacta gcactttcat aaagtgcttg aaatttttga taaaacaaac tctctttaat
     4261 actaattcca cttgcaaagt taagcatatt gtctttatca aaaagtctta aaaactcaca
     4321 aaaactttca tctggagtta taactgcaat attttcaggc tttaaacctt tgcgtacaaa
     4381 atgtgaaatt tcatccataa caaaagcaca ttgcaaagcc cttaattcaa aagatttgag
     4441 tttaattttt gaattttttg ttttaaaaat ttcttctttt aagatctctt gttttgaaag
     4501 attgatttca taatgagtgt ttatttttaa atcaaatatt tttaaaaaat caagttttaa
     4561 aagatattca agattaaatt tactcgtttt aaaacttaaa accacttctt taatctgaga
     4621 aatttcactt aataaatttt cttcaaattt acttaaaaaa ccttgcaaat cataaactat
     4681 agcttcatac tcatctaaaa aatctttatt aagagtgtaa tttttaggta aagaaagatc
     4741 atcataaaaa gaattctttt caagcaaagc aagataattc ttatatacct catctaaaat
     4801 ttccaa
//
LOCUS       DAPOLW010000120         4753 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.120, whole genome shotgun sequence.
ACCESSION   DAPOLW010000120 DAPOLW010000000
VERSION     DAPOLW010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4753
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.120"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(54..812)
                     /gene="map"
                     /locus_tag="ROE18_001483"
     CDS             complement(54..812)
                     /gene="map"
                     /locus_tag="ROE18_001483"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HDX3651650.1"
                     /translation="MIELKKPDEIEKLRIANQIVAKTLNFLENEIKIGMSLKQIDKMA
                     EDYILSLGAKPSFKGLYGFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGEVSPADKALISCAKDALYHAIDIIRDGMRFKELSAALGEFIHVRGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHY
                     NGKWDAGSIDGLNAAHYEHCVAVINGRAEILSMI"
     gene            complement(814..1566)
                     /locus_tag="ROE18_001484"
     CDS             complement(814..1566)
                     /locus_tag="ROE18_001484"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HDX3651651.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENID
                     LKNHKAKLHFYASSDVESLKNTAKIWLNLLRK"
     gene            complement(1568..2026)
                     /locus_tag="ROE18_001485"
     CDS             complement(1568..2026)
                     /locus_tag="ROE18_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDX3651652.1"
                     /translation="MRHIFFIITIIFFISGCSFYQNLNYRPSYNTNKEARLKVIANEW
                     KKTPYVLGGTSKKGADCSGFTQSALAQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLVF
                     FKTGRGPNGMHVGIYMSKGKFIHLSTKDGVKEVELNSSYWKARYIGARRY"
     gene            complement(2035..3204)
                     /gene="nhaA"
                     /locus_tag="ROE18_001486"
     CDS             complement(2035..3204)
                     /gene="nhaA"
                     /locus_tag="ROE18_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDX3651653.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFALVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIAAFVIAGLAILVMLILNLLGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIVTAFFIPMQTKNGEAFLEEIYESLKFWIAFIILPLFAFANAG
                     VNLSNIDIGAIFSGVSIGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFTTRS"
     gene            complement(3201..4349)
                     /gene="nhaA"
                     /locus_tag="ROE18_001487"
     CDS             complement(3201..4349)
                     /gene="nhaA"
                     /locus_tag="ROE18_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDX3651654.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSVIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFIAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEYADKLAILVASFLSAIVGFVYLKIVK"
     gene            complement(4492..4674)
                     /locus_tag="ROE18_001488"
     CDS             complement(4492..4674)
                     /locus_tag="ROE18_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HDX3651655.1"
                     /translation="MVSDVSMGNVNLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASAPQASSSSGLDIYA"
BASE COUNT         1790 a          901 c          581 g         1481 t
ORIGIN      
        1 aattttaaat ttttaggatt ttaagaaaaa aatattattt ttataattta atatcatatc
       61 atagaaagaa tttcagcacg cccattaatc acggcaacac aatgttcata atgagccgca
      121 ttcagcccat caatacttcc agcatcccat tttccattat aatgctttgg tgttccatct
      181 ttttggcata tcataggctc tatgcaaaac accattccat ttttaatttt agggccactt
      241 tttgcactcg cacctttttc taaatagttt aaaatttcag gctctccatg gggctttcgt
      301 cctataccat gcccgcaata tccacgaagc gggacaaaac ctcttacatg gataaattcg
      361 cctaaagcag ctgaaagttc cttaaaacgc attccatcac gaataatatc tatagcatga
      421 tataacgcgt ctttagcaca agagattaaa gctttatcag cgggtgaaac ttctcctata
      481 gcaatagttc ttgctgcatc cccataatac ccatcaatca aacttcccac atcaagacct
      541 aaaatatcac cctctttgat aattttatca tctggaattc catggataca aacttgattt
      601 aaagatgtgc aaatggcacc tggaaaacca taaagtccct taaatgatgg cttggcgcca
      661 aggcttaaaa tataatcttc tgccatttta tcgatttgtt ttaagctcat tcctatttta
      721 atttcattct ctaaaaaatt taaagttttt gctacaattt gatttgctat tcttaatttt
      781 tctatttcat ctggtttttt caattctatc attttatttc cttaataaat ttagccaaat
      841 tttagcagta ttttttaaag attcaacatc gcttgaagca taaaaatgta attttgcttt
      901 atgatttttc aaatctatat tttctctttc tttaagaaat tcaactatag catctcctga
      961 atgaattaat tttgttttat caccaaaata cttacttaaa gaacgtccta gtaaagggaa
     1021 atgagtgcaa gcgagtatca aagcatctgg agttgtgata tttttaaaat aatattccat
     1081 agcactttgc aaaaaatctc cttcaaaaat accttcttca accataggca caaaaagccc
     1141 tgtagctaaa gcatttatat ttgtatatcc ttgagataac aaacgctttt gatattcttc
     1201 tgatttaatg gttgcttttg tcgcaatgac taaaatttct ttatttttat catgcaaagc
     1261 ttttatcgtt gcttcaaccc ctgcatcaat tacgccatat actggaaaat gtgcttttgc
     1321 tcttaaagca tctaaagcat aagcactagc agtattacat gcaatgataa gcatatcaat
     1381 ttgaaattgt tcaaaaaaat ccaatgcttc aagacagaac tttataatag tatctttatc
     1441 tttcactcca taaggaactc ttgcggtatc tccataatag ataatttcat caaaaagcct
     1501 agcttcatag agagatttta aaacactaag ccctcctact ccgctatcaa atacacctat
     1561 tttcacttta ataccttctt gctcctatat aacgagcctt ccaataagaa ctatttagct
     1621 cgacttcttt tactccatct ttagtagata aatgtataaa ttttcccttg ctcatataaa
     1681 taccaacatg cataccattt ggccctctac ctgtcttaaa aaataccaaa tctcctgttt
     1741 gcaattttga tttagaaact tttcttccag aacctaattg agtttttgta gtgcgaggta
     1801 tgcgtatatt aagctgagct aatgcgctct gtgtaaatcc tgaacaatca gcaccttttt
     1861 tactagttcc acctaaaaca taaggggttt ttttccattc atttgcaata accttgagcc
     1921 ttgcttcttt atttgtgttg taactaggac gatagtttag attctgataa aaactacatc
     1981 cacttataaa aaatataatc gtgatgatga aaaaaatatg cctcatcaat ccccttaaga
     2041 tcgagtagta aagaatttaa gataaataaa accccaaatc ccagaacaaa atgaggctat
     2101 gagaatagct aagttatctg cataattaaa aatatcacta acttcatacg ccaatccatc
     2161 aataaacaaa ctcattgtaa aaccaattcc tgtaagtatg caaaccccat aaagttgttt
     2221 caaatttgaa ccttggggca aagctgcaaa tttaaagcgg attgccaaat aagaaaataa
     2281 aaatacaccc acttgtttac ccacaaaaag ccctaagaaa atacctatac ttacacctga
     2341 aaaaattgct cctatatcga tattggataa atttactcca gcgttagcaa aagcaaataa
     2401 aggtaaaata ataaaagcaa tccaaaattt taagctttca taaatttctt ctaaaaatgc
     2461 ttccccattt ttagtttgca tcggtataaa aaatgctgtt acaattccag ctaaagttgc
     2521 atgtactcca ctttttaaaa cactaatcca aagaataact gagcaaataa aataaaaaga
     2581 ctttcttgtt atccctaaaa gatttaaaat aagcattacc aaaatagcaa gtcctgcaat
     2641 tacaaaagca gctattgata attttgtcgt ataaaaaata gctataatta aaatagcacc
     2701 cacatcatca aaaatagcca aagaaagtaa gaaaattttt aaacttgatg gaatgtgctt
     2761 gccgcacatc attaaaatcg ctaaggcaaa cgctgtatct gtagctgtag gtattgccca
     2821 accttttaaa gtataagcat ctcctatatt caccaaagca aacaacattg ctggtataag
     2881 tataccccct aacgcagcca taaaaggcaa aacaatattt ttaggatttt taaaatctcc
     2941 gtgcaaaaat tccttcttaa gctcaagccc tatagcaaag aaaaatatag atataagccc
     3001 atcatttatc caaagtaaaa aaggcttgtt aagctcaaat tcacctacac taaatccgac
     3061 ttttaaattt agaaattctc gataatgttc gctaaaagac ccgttttgca caagcaaagc
     3121 aagcaaagtg caaactataa gtaaaacgcc gccaaaagcc tcatttaaaa ctaaagtttt
     3181 taatttatgt actatattat tcatttaaca atcttaagat aaacaaaacc aacaatggca
     3241 cttaaaaaac tagctactaa aatagcaagt ttatccgcat attcaaaaat atcactattt
     3301 ttataagcca aaccatcaat aaacaagctc atcgtaaaac cgatgcctgt taaaatacat
     3361 ataccataaa attttccata tttaatattt tcaggtaatt ttgcaagttt aagtttgata
     3421 gcaataaaac aaaaagtgaa aacacctaat tgttttccta aaaatagtcc taaaataatc
     3481 ccaagactta caggagaaaa tactgaacca agatgcatat ctctaatatc aattccagca
     3541 ttggcaaaag caaataaagg taaaataaaa taaactaccc aaggatttaa atccttaaga
     3601 acttcatgta aataaggttt tttatttttt gtatcaagag gtataaacaa agaaatgatc
     3661 acaccagcca aagttgcatg cactccactt ttaagcatag ctatccacaa cacaacacct
     3721 accaacacgt acaaagaaag atgggtgatg tgataataat ttaacaaaag cagagcaaat
     3781 atacaaaaca aacaaataat aattgctaaa gctgaaagct gatctgtata aaacaaagca
     3841 ataataacaa tagcacccaa atcatcaaaa atagctaaag agagtaaaaa aagttttaaa
     3901 cttgtaggaa ttttatttcc caaaagcatt aaaataccca ctgcaaaagc tatatcagtt
     3961 gctgtaggta ttgcccaacc tttcatagca aaatcatgag aataattaat agcaataaaa
     4021 attaaagccg gagtaatcat accccctaaa gctccaaata taggtaaaga tacagctctt
     4081 atatttttaa gttgcccacg taaaatttca tattttaact caagccctat acatagaaaa
     4141 aatatagcta tcaaaccatc atttatccat aaatccaacg attttgaaat ttgaaaatga
     4201 tcaaatccta ctgtaaaatt agcatgaaaa aaatctgtat aaataacact taaagaagaa
     4261 tttttacata ataaagctaa aaatgtaaaa aatataagca aaataccagg gaaagtttca
     4321 cttaaaacca tcttctttat catttgcatc cttgctccta agtaaatatt tgtaaaaatt
     4381 taatacgata aataaaatgg taaaattata acgaaaaaat actaaagaaa taattattta
     4441 aaaaaacaag cccaagatac caaaaagttc ttaagcttgt tcttaagata tttaagcgta
     4501 aatatccaaa ccactagagc tagaagcttg tggagcggag gcttgagaga caccttccat
     4561 accttcgatg agttcattca tcaatgcctc gtttgtgtcc atagattttt tcaaaactga
     4621 agtattaaca gcagtcatta aattaacatt acccatagaa acatctgaaa ccatacatcc
     4681 tccttttaga ttgagtctta agactttatt taaatcggat gatattttta aaacttaata
     4741 ttttttacta aac
//
LOCUS       DAPOLW010000121         4731 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.121, whole genome shotgun sequence.
ACCESSION   DAPOLW010000121 DAPOLW010000000
VERSION     DAPOLW010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4731)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4731)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4731
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.121"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            3..689
                     /gene="ung"
                     /locus_tag="ROE18_001489"
     CDS             3..689
                     /gene="ung"
                     /locus_tag="ROE18_001489"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HDX3651656.1"
                     /translation="MTINIDKIKINDDWKEFLRDEFQKKYFLEIKKQYLNAINQNIII
                     YPPANLIFNAFNLCPLKEIKIIILGQDPYHQPNQAMGLSFSVPKNVKIPPSLNNIFKE
                     LQNDLNITPAKSGDLSSWAKQGVLLLNSILSVEANKAASHSSWGWQEFSDAIIHKLSN
                     EKSGLVFMLWGNYAKNKEILIDNTKHLILKAAHPSPLARTGFLGCKHFSKANEFLKKV
                     GKIPIDWKIV"
     gene            805..1500
                     /locus_tag="ROE18_001490"
     CDS             805..1500
                     /locus_tag="ROE18_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HDX3651657.1"
                     /translation="MKTIGIIGGMSFESTITYYKTINQAINDKLKSLNSAKILLYSVN
                     FEEIENLQSQDKWQEAAQILTQCAKKLELAGANFIIIATNTMHKVFDEIQQNINIPIL
                     HIAKSSAKALKQENIQKIGLLGTKYTMTQDFYKKMLIEENISVITPSDEDIKIVNDII
                     FNELCKGEIKQDSKEKYLNIIKKLQEKGAKGVLLACTEIGLLISKNDTNIKIFDTSLI
                     HALDAANEALKDL"
     gene            complement(1694..2818)
                     /gene="cydB"
                     /locus_tag="ROE18_001491"
     CDS             complement(1694..2818)
                     /gene="cydB"
                     /locus_tag="ROE18_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HDX3651658.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFMNNINDENIKIRAMKKLMINSILFL
                     PFFLGFLAWIFLKDGFSVDTNGVVSMSANLYLYNFLNQMIFAVLLVIGVILVLLGMVQ
                     GTKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLSDLQSSLTLKNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(2818..4380)
                     /locus_tag="ROE18_001492"
     CDS             complement(2818..4380)
                     /locus_tag="ROE18_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HDX3651659.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKGFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQSFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQALKDYKLAKENNDTIAMANHKSILETHFKDFGYGYLEKPSDTIPPVALTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIMLTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            complement(4381..4614)
                     /locus_tag="ROE18_001493"
     CDS             complement(4381..4614)
                     /locus_tag="ROE18_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HDX3651660.1"
                     /translation="MYLKHLYFSISQIFNFYKEGFKNLTLGKTLWKIIFIKLFVMFVI
                     LKLFVFDVNFNSIFKSDKEKSTFVLKNLTLEGK"
BASE COUNT         1860 a          767 c          645 g         1459 t
ORIGIN      
        1 aaattacaat aaacatagat aagattaaaa taaatgatga ctggaaagaa tttttaagag
       61 acgaatttca aaaaaaatat tttctagaaa tcaaaaaaca atacctaaat gcgattaatc
      121 aaaatataat tatttatcca cctgcgaatt taatctttaa tgcttttaat ttatgtcctt
      181 taaaagaaat taaaattatt atcctaggac aagatcctta tcatcaacca aatcaagcaa
      241 tggggcttag tttttcggtt ccaaaaaatg taaaaatccc accaagtctt aataatattt
      301 ttaaagaatt gcaaaatgat ttaaacatca ctccagcaaa aagcggagat ttaagctctt
      361 gggcaaaaca aggagttttg ctcttaaatt ctattcttag cgttgaagca aataaagcag
      421 ctagccatag ttcgtggggt tggcaagaat ttagtgatgc tataatacat aaattaagta
      481 atgaaaaatc agggcttgtt tttatgcttt ggggaaatta cgcaaaaaac aaggagattt
      541 tgattgataa tactaagcat ttgattttaa aagcagctca cccaagccct ttagctagaa
      601 caggattttt aggttgtaag catttttcaa aggctaatga atttttaaaa aaagttggta
      661 aaattcctat agattggaaa atagtttaaa aaattatttt aaactttaat aaaaatatta
      721 aaatatattt atttaaaaat aaatcatatt tctatgaaat atattgtaat aaaacgactc
      781 aaaaattaat tcttaaggag aaaaatgaaa accattggta ttataggcgg aatgagtttt
      841 gaaagcacta ttacttatta taaaacaata aatcaagcta taaatgataa attaaaatct
      901 ttaaattctg caaaaatttt actttacagt gttaattttg aagaaataga aaatttacaa
      961 agccaagata aatggcaaga agctgcacaa attttgactc aatgtgctaa aaaattagaa
     1021 cttgcagggg ctaattttat aataattgca actaatacta tgcataaggt ttttgatgaa
     1081 attcaacaaa atataaatat ccctatttta catattgcaa aaagttctgc taaggcttta
     1141 aaacaagaaa acatacaaaa aattggttta ttgggtacta aatacacaat gacgcaggat
     1201 ttttataaaa aaatgctgat tgaagaaaat attagcgtta ttactcctag tgatgaagat
     1261 ataaaaatcg ttaatgatat tatttttaat gagctttgca aaggtgaaat caagcaagat
     1321 tctaaagaaa aatatttaaa tattataaaa aaactacaag aaaaaggggc aaaaggagtg
     1381 cttttagctt gcactgaaat tggtttatta atatccaaaa atgatacaaa tatcaaaatt
     1441 tttgacacaa gccttattca cgcccttgat gctgctaatg aagctttaaa agatttatga
     1501 ttaaaagatg cccaaaaatg ggcaaattgc aatattttga aaagatttat acttatatcg
     1561 gtttaaatct tatcttgctt tatagtttgc tatctttttc taattgattg atatttagca
     1621 ttataaattt atagctcaga taaattacta aaggccaagc caataaaaac aaagcatgta
     1681 acattttttc tccttaatat gcgtgatcat cgtttgcgat ttcttcgcgt gtgattttta
     1741 ctttatccat tgcattccaa acatagataa tataagctaa aacaaaaggt acaagtaaag
     1801 atacataagc catgacgctt agagtataat agcttgaact tgcatttttt aaagttaaag
     1861 aactttgtaa atcacttaaa gatgggtaaa aagcactttg acctaaacca atgcttgata
     1921 ataaagcaaa aactgttaaa accgttccaa gtcctagggt aaaaatagct ttagagcaac
     1981 cttttgttcc ttgaaccata cctaaaagca ctaaaatcac accaataaca agcaaaacag
     2041 caaaaatcat ttgatttaag aaattatata aatataaatt cgcactcatg cttacaactc
     2101 catttgtatc tacactaaaa ccatctttta agaaaatcca cgctaaaaaa cctaagaaaa
     2161 aaggtaaaaa taaaatacta ttgatcatga gttttttcat agctcttatt ttgatattct
     2221 catcattgat attgttcata aaatacgctg cgcctaaaag ccttgctaaa aatactaaag
     2281 ctaagcctaa gagataatta aaaggattaa gtaaaagttc taagccgtgc aaaggatttt
     2341 gccaagaaac aaaattatgc tcatttaaga taaattcaga accgctaaaa aaactactta
     2401 ctgcaactcc gattaaaaac acacctaaat aaccattaat tttaagaaaa atttcatagg
     2461 ttttagagcc ataaacatta ttttcttttt tgcgatattc ataagccaca gcctgtaaaa
     2521 taaaacaaaa taaaatacaa agccaagccc aataagctcc gccaaaactt gtactataaa
     2581 aaagtggaaa agctgcaaaa gctgctccgc caaaaagtac gagagttgta aaaccaagct
     2641 cccatttacg ccctaaagaa ttaactagca tagttttttc aagctcatcc ttgctaagct
     2701 catcgattaa agtctgtcca ccttgaacaa aaaacataaa aactaaaagt ccaccaagta
     2761 aacttaaaat caaccaccaa taaatttgca aaccttcaag ttctaaacca aaaaacatta
     2821 tttttctcct ttgcccataa gtggagtatg tcctgcatgt gcgtcaaaac cttttttaat
     2881 ctgagtaagc atgattttaa cttctgcaat caataatgct gtaaaaagta ctgcaaaaat
     2941 ccaaaatgaa atttgaacat tgacttttcc aagttgtgtt gctgcgatat gtacaggaag
     3001 caagtcttga attgcccaag gttgtctgcc tacttcagca acaatccaac ctgcttcagc
     3061 ggcaatataa cccaatggaa tggataacaa acacacccaa agtacttttc taaatttctc
     3121 aatatcattt gccatggtaa gataaagcgt aacgatgaaa agtaaaaaga aaaaacttcc
     3181 taaagcaacc atgatatgaa agctataaaa agttaaagcc acaggtggaa tagtatcgct
     3241 tggtttttct aaatatccat aaccaaaatc tttaaaatga gtttctaaaa tggatttgtg
     3301 atttgccata gctattgtat cattgttttc tttagcaagt ttatagtctt ttagagcttg
     3361 tatagcgatt tttcctctat cgatacgatt ttgcataggt tctatacctt tgctttcatt
     3421 tccatagatc aaatcttcaa ttcctggaac aaaagaattt ggatcacggt ttcctaatat
     3481 agaaagagcg taaggtatag taatgtcaaa taaaaacaca ctttcgttat tatctatggt
     3541 ttttttagga tttaaaattc caaaaggtac aagtcctgca cgatgttcac cttgataaac
     3601 cccttccata gctgcaagtt tcataggttg agtttgagtt acacggtaag cgctttcatc
     3661 tccgctgaaa aacaaaaaga ttgaacaaac caaaccaaaa ctagctccta caactaagct
     3721 ttttttagcc tcgataatat ggcgtccttt taacataaac caagctgaaa ttcccattac
     3781 aaataaagct gaaattacat aaccactgcc tatggtatgt aaaaattttg aaatagctac
     3841 aggagaaagt gctacttcaa aaaagctttg catttcattt cttgctgtgt cagggttaaa
     3901 gctcattcct acaggatatt gcatccaacc atttgccact aaaatccaaa aagcagaaag
     3961 attacttcct atagccacac accaagttga aagtaagtga aaacccttgc ttactttatc
     4021 ccagccaaaa aacataactg caaaaaaagt agcctctaaa aaaaatgcca taataccttc
     4081 aaccgccaaa ggtgcaccaa aaatatcacc cacaaaccag ctataatttg cccagtttgt
     4141 tccaaattca aattccatta taatgcctgt agctacaccg atagcaaaat ttatagcaaa
     4201 taatgaaagc caaaatttgg tgattttttt ccatctttca tttttagttt ttacatagat
     4261 ggtttccatg atagcgatca taaaagacaa gcctaaggtt aaaggcacaa acaaaaaatg
     4321 ataaagtgca gttaaagcaa actgcgctct tgaccaatca acgctactaa gttcgttcat
     4381 ttattttcct tcgagtgtaa gatttttgag tacaaaagtg cttttttctt tgtcgctttt
     4441 aaaaatagaa ttaaaattta catcaaaaac aaaaagtttt aaaatcacaa acataacaaa
     4501 aagtttgata aaaataattt tccaaagggt ctttccaaga gttaaatttt taaaaccttc
     4561 tttgtaaaaa ttaaaaattt gagagatgct aaaatataag tgtttaagat acatataaat
     4621 tctaccttta aaaacaacaa aataaaacat ttttaaaaag cggaaaatta taatgaaatt
     4681 tatgttatta ttttcttaaa aatttaaata catatcaagg tttttaatgc a
//
LOCUS       DAPOLW010000122         4697 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.122, whole genome shotgun sequence.
ACCESSION   DAPOLW010000122 DAPOLW010000000
VERSION     DAPOLW010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4697)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4697)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4697
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.122"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..324
                     /locus_tag="ROE18_001494"
     CDS             <1..324
                     /locus_tag="ROE18_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651661.1"
                     /translation="LPNKIKNPILTIEKLINLPANGSMEILTKNKPTKGKYILIQSDV
                     GIYDGDNGLLNQQELENLLEKMKNNKNKFNYNKIEKLAKSTLKNVNFSFEVSDDAKII
                     YINIL"
     gene            336..1790
                     /locus_tag="ROE18_001495"
                     /pseudo
     CDS             336..1790
                     /locus_tag="ROE18_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874703.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
     gene            1787..1951
                     /locus_tag="ROE18_001496"
     CDS             1787..1951
                     /locus_tag="ROE18_001496"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651662.1"
                     /translation="MSAGNYKTQAGKVIGDPGISVNNNFSNIYVYHNLENGYIDEGQN
                     FLSLCNIIMK"
     gene            1930..2856
                     /locus_tag="ROE18_001497"
     CDS             1930..2856
                     /locus_tag="ROE18_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651663.1"
                     /translation="MQYNNEVTGKKDFDSAVRKKFNDIKYLDNNSYAFADSFTKATDA
                     VKLSKDDFDPKLLQRILDDLMNGKYTYDFDTKTWTYTDSKGVVGKDEASEITQSLNFL
                     NAFKDTGVEQEFLKLWQGSQEQNYKNYTNLYEKWTQKKTAMDKIKTGEGYFASFKEEL
                     QKYQEALAQLDKENKNYEKIKESGLVSDETLRAIYEKLLEQKEALEKQFADLSGNEGF
                     RYKLENEILNSQGFSIEGKDVDGKVYTGNFNFKGKLASLPEKPNISIYEPDKQGGEDP
                     DKPSVLPPEIPEKVVEAPIKIQTEVDAKKRRR"
     gene            2969..4660
                     /locus_tag="ROE18_001498"
                     /pseudo
     CDS             2969..4660
                     /locus_tag="ROE18_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893445.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
BASE COUNT         1838 a          525 c          880 g         1454 t
ORIGIN      
        1 ttaccaaata aaataaaaaa tcctatcttg actatagaaa aacttatcaa tcttcctgca
       61 aatggaagta tggaaattct tactaaaaat aaaccaacaa aaggaaaata tattctcata
      121 caaagtgatg ttggaattta tgatggtgac aatggattgt taaatcaaca agaattagaa
      181 aatttgttag aaaaaatgaa aaataataaa aataaattta attacaacaa gatagaaaag
      241 ttggctaaaa gtacattgaa aaatgtaaat tttagctttg aagtttcaga tgatgcaaaa
      301 ataatttata tcaacatact ttaaaggaga gtaacatgaa aaagatgagt aaacatatag
      361 ttttatcatt tgcggtgagt tctttgctct tttctcaagc ttatgcttta ctaagtgggg
      421 gtaaatttac tcatggtaca agtgggacta tccatacctc tggcaatact gtaacgatta
      481 caggaaaagg acaaaatcat gttatccaat ggggtggcgg ttttaatata ggacaaaatg
      541 aaagtgtaaa ttttaacggc aaaaatcaaa actacctaaa cattgcttat caaaaagatg
      601 cttctaagat agacggagct ttaaatagag ggaataacaa tatcttttta gttaatccta
      661 tgggagtttt gattggcaaa acaggaacta ttactgcggg aaaatttgta gctagcacaa
      721 cagctttaag tgatgataat gtcaaaactt ttttagagaa aggagctagt ttctctccgg
      781 catttgatgt aagcaaacaa ggaaatatta taaatcttgg aaagatcaat gcagataata
      841 ttgttttaat aggaaataag gttgaaatca ataaaggaaa aattactttg gatgtattaa
      901 aacttgaagg taataaagtt tatgttgatg ctggagtggt aaaagataca aaaaatatcg
      961 tagccaaagc agagcaagaa gctatcattc aacaaagcat aacaagtttt gaagaagatg
     1021 gagctttatt gggtaattct agtagtaaat ttagttttga tgatagtagt aaagttaaaa
     1081 actggactaa atatggaagt attgcggatg caacagaatg gaataaattt gctgattttt
     1141 ggaatgtaaa taaagaaaaa tttagaacag cttttgatca ttttcgtttg attgatgata
     1201 ttgattttag tggcgtgaaa acatacatag taggtgataa tacaagcaat gcttttgcta
     1261 aatctttcga tggttctggt tatgctttaa aaaatgttaa tattaattca tcaaatcaat
     1321 atgtaggaat ttttggagtt gttcaaaata gctatataag aaactttaat attcaaggat
     1381 tgaaaattgc ttcaactggt tatgatgctt agttggaggt atagtagggc aaaatattgc
     1441 aaacagttat acgggttttg aaaatgtgac tgttaatgat ctcgttatta atacagctgt
     1501 aaatactaaa gttggcggaa taataggctg gggaatggta gtggagggaa taacactatc
     1561 aattttacaa atgttgctat taataatata agtatagtag caaagaaggt tcttatgtgg
     1621 gtggcatagg cagacaaatt gatggtggta attttaataa tgttgtggtt aatgacatag
     1681 aaaaacttat aacttctggg aatgatagta aaacaggagg atttactgga aaagttggaa
     1741 atttaaagat taataatgct tacttatttt ataaaatgga gcaattttga gtgctggaaa
     1801 ctataaaaca caagctggaa aagttattgg tgatcctgga attagtgtaa ataataattt
     1861 tagtaatatt tatgtttatc ataatttaga aaatggttac attgatgaag gacagaattt
     1921 tttaagtctg tgcaatataa taatgaagta acaggaaaaa aagattttga tagtgctgta
     1981 agaaagaaat ttaacgatat aaaatatctt gataataatt cttatgcttt tgctgattct
     2041 tttaccaagg caacagatgc tgtgaaatta tccaaagacg actttgaccc taaattgctt
     2101 caaagaattt tagatgattt gatgaatgga aaatacactt atgattttga taccaaaact
     2161 tggacttaca cagatagtaa gggtgtggta ggaaaagatg aggctagtga aatcactcaa
     2221 agtttaaatt tcttaaatgc gtttaaagat acgggagtag aacaagaatt tttaaagtta
     2281 tggcaaggtt cgcaagaaca aaattataaa aattatacca atctttatga aaaatggacg
     2341 caaaagaaaa ctgctatgga taaaatcaaa accggcgaag gttatttcgc tagttttaaa
     2401 gaagaattac aaaaatacca agaagcctta gctcaacttg acaaagaaaa taaaaactat
     2461 gaaaaaatca aagaatcagg cttagttagc gatgaaacat taagggctat atatgaaaaa
     2521 cttttagaac aaaaagaagc tcttgaaaag cagtttgcgg atcttagtgg aaatgaagga
     2581 tttcgctata agcttgaaaa tgaaattcta aattctcaag gtttttctat agaaggtaaa
     2641 gatgtagatg gtaaagtata cactggaaat tttaatttta aaggaaaatt agcctcattg
     2701 ccagaaaaac caaatatatc tatctatgag ccagataaac aagggggtga agatccagac
     2761 aaaccttctg tattgccgcc tgaaattcct gaaaaggttg tagaagctcc tataaaaatt
     2821 caaaccgaag tagacgcaaa aaaaagaaga agatgatgat caagtggaaa taggagaagc
     2881 agatgctaga agtagtggtt tgcgttgtat tgtaagtgat aattttaaga caatgaatat
     2941 ttgtgtaaat gcaaaatagg aaataaaaat gagaaaaatt ttagttgttt tagtcttatt
     3001 gcaagtattt tcacatgctg aagagctaaa taataataaa ataagagagc ttatagaaag
     3061 ctctcctgaa gcaaatgaac cacaaaataa aaatttaaaa aatacattaa aaaatcaaaa
     3121 aagccctgta aattttaaag agcaaaatac tacaaatatt gcaaatttac aaactgatca
     3181 aaatgaagct aaggtttttg taagagagta tgttttgcat atcgataata aagatttgac
     3241 atttaaaaaa ttaagaatta gcgaaaaata aattcaagat gcaatagctg aatatcgcaa
     3301 ccaagaatta agcttacaaa atttaaaaga tataacaaac attatagttt attattgtca
     3361 attaagtggc catccttcgg caactgctta tataccaccg caagatttaa gttctaacaa
     3421 agtgcaaatt aacatagttt ttggaacttt taggaaaagt aattattaaa aacaactcag
     3481 gtgtcagaga ttatgcttta gagagtaaat tgaacaaaaa tcttaaaggg aaagttatca
     3541 caactaaaaa tgtggaaaat gaaatttata aaatcaatga aatatacgga atccaaacca
     3601 atgctaattt acaatcaggt gatggttgtg gagaaagcga tgttattatg gaagtaaaca
     3661 aaggtgagat agtgcaactt taactttata ttctaacaac tatggggcta aagaaacagg
     3721 tcgttttaga gcaggaatga gtcaaagttt aaacaatata gcaagataag gggataactt
     3781 aaatttttat cttcaagata gtgatgaaaa tcaaacagat tataggatta attatagtac
     3841 ttttataggg aatttaaaaa ttactccatt tgcaactcaa ggacattatg ttcctggcag
     3901 aatttataga aatcttagtt tttataggga ctctatgaat gttggagtaa atttttctta
     3961 tcctgtgttt ttatatactg agtattcttt atatcttgtt tcgggtttta ctcataaaaa
     4021 gattaaagat tattatcttg atggtttagt aagcaatgaa aaagcgagaa atagtgtaaa
     4081 tttgggcata gaaagaactt atagaggttt ggagaataat gtcctaagtt atactttaaa
     4141 ttttatatat ggtaatgttg aaaatgatgg tgatttttct ggatttaatg aagtaaattt
     4201 aggaaatttt ggaaaaatga atttaaattt aagcaacaaa tatcaattct aagaacgctt
     4261 aactcacatt tttcaactta attatcaaaa agttatcagc gatgctgttt tagatagtag
     4321 tgaatccgta tctttaggta gaccttgtgg tgtatgtgtt tgtttagaag gtgagggaag
     4381 tgcggataat gttgtttctg gcgccttggg aataagattt caaacacctt tagaagggct
     4441 ttactcgact cctttttatg atatagggta ttcttggtat gaaaataaag aatatcaaag
     4501 tgaaaatcat tatcttatgg atgcaatggg tatacaaata ctctatacaa gaagtgctaa
     4561 tttttatgta aaaatggatg ctgcaagagc tgttcatcgg tttaaacacg atggagaaca
     4621 tcgagcaaga gtttatgcaa gcctagaaaa atacttttaa ctttggggtg attggaaaat
     4681 cccgcccccc cattttt
//
LOCUS       DAPOLW010000123         4649 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.123, whole genome shotgun sequence.
ACCESSION   DAPOLW010000123 DAPOLW010000000
VERSION     DAPOLW010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4649
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.123"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..851)
                     /locus_tag="ROE18_001499"
     CDS             complement(<1..851)
                     /locus_tag="ROE18_001499"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HDX3651664.1"
                     /translation="MKFAILFGGNSYEHEISIVSAVVLKKVINQNLEFIFCDEERRFY
                     HIPSEKMNSKTFSTKAYKKEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDG
                     KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDCTMLRKNQNSKEKLN
                     FPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCII
                     NDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLF
                     KGALIRC"
     gene            complement(861..1412)
                     /gene="ruvA"
                     /locus_tag="ROE18_001500"
     CDS             complement(861..1412)
                     /gene="ruvA"
                     /locus_tag="ROE18_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HDX3651665.1"
                     /translation="MVVGIEGIITKKEPTFIIVKCTSGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKII
                     SVLASAQATGTSELIKEALKKLG"
     gene            complement(1388..3247)
                     /locus_tag="ROE18_001501"
     CDS             complement(1388..3247)
                     /locus_tag="ROE18_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HDX3651666.1"
                     /translation="MALDEKIIAYTENPARELLSVASRTNLSLNELDFSLLAFSTQYR
                     FGDLEWEKISEKELILFDKDEIFLKNDLQIKQEYKIEIFHGINQSKASQAVKLVANKN
                     LTKIVAQIDFTNLDFHEKLALELLQNIYKKMLKLKFLIGIRIFDFKKNLMSFCNQHKN
                     TPLNKTIQITVAQGIDPIESQDESLILTYKEKTKNYTIDEKRSGIIVVDENEVVLKHA
                     KFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAFKQVEQDGYTEYIALKKGYVVQDGE
                     KFDIANELDFNGVDFKNIGIIRAGLDKNVKINIKFLSEVKDAVNSGVGIECEELNVVG
                     SVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKTHRGFAEAEILNIDLLEGGTIKAKE
                     VRIKKSLGGNIQADKIYIENLESNNSCVFFENTTIERINGDNNKFHAKIKTLDKNYDE
                     EFAILGEQISKLNHKINKIRQYILSSKNGILSVEKKITELKNQGQNVPVQYEKALKDF
                     SLQNLELNKLQNEEKELLERKKSLQLELINLQKMLFEATFINKSGKWTDMNEIKFSLL
                     EPKEDIFYSSFVNESAKFIGIKKVIQNNQESIEIHKKLDYEEKDIAWLSASKE"
     gene            3351..>4649
                     /gene="murJ"
                     /locus_tag="ROE18_001502"
     CDS             3351..>4649
                     /gene="murJ"
                     /locus_tag="ROE18_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HDX3651667.1"
                     /translation="MKSLVFKNFIINALGILFSRILGLARDVLIALFLGAGLYSDIFF
                     VALKMPAFFRRIFAEGAFGQSFLPNFVKAKKKGAFCVSVMMQFSLIVFLFCLLVSFFS
                     SFFTKLFAFGFNADTIALAAPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAAL
                     FNLSIVIAAFFVDKNAPQNTLYYFSYATVLSGVAQLILHLLVLKNNPVIRAMALSIKF
                     KKAKAKLQGFYGNFFHGVLGSSATQFSSLLDTTIASFLMSGSISYLYYANRVFQLPLA
                     LFAIALTQVSFPKILKHLKSGQENLALKFMQRALALLSILLIASSIVGSVFALEISKL
                     LFERGNFTHEDSVITAYVLIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAWIAVKSLII
                     SALCSMAFIFLIKDESLKVIAVALSSSISAFYLLGANIKEF"
BASE COUNT         1340 a          706 c          661 g         1942 t
ORIGIN      
        1 tcgcagcgta ttaaagcacc tttaaacaaa ggattgtaga tctttttaaa actgtctttg
       61 agtttttctt ttaattcttc gcttaaatcc gcttctataa gctcattgtg tcctgaaaag
      121 ctaagatatt tttgttcaaa gtctaaaaat tcttttttct ttggctcttc tatgatggaa
      181 aaaacaaact catcattgat tatacatcct gcaagattgt attctttgat attgttttta
      241 aattcttcca ctacaagatc attatcaaat tcaaaaccta catctttggc atattctaaa
      301 tctttttcat cttttactat gctaatgcct atactacttc caagtcttgc aggtttgata
      361 atgcaaggaa aattaagctt ttctttagag ttttgatttt ttcttagcat ggtacaatca
      421 agtgttttta ctccaacgct tttggcataa agtttggtaa gttctttgtt gaaagataat
      481 acactagctt caagcctagg tcctataaat ttaatagaat aaaactcaaa taaagccgca
      541 atttttccat cttctccatc tctaccatgg ataagattga tcacgcattc gcactctagt
      601 ttattttctt ttaaaaagcc tttgctaaaa aaacctcctt gtttgatgaa aagttctttt
      661 tcttttttat aagctttggt actaaaagtt ttagaattca ttttttcact tgggatatga
      721 taaaatcttc tttcttcatc acaaaaaata aattctaaat tttgattgat aactttttta
      781 agtactacag cacttactat actgatctca tgttcataag aatttccgcc aaaaagtatt
      841 gcaaatttca ttttattcct ttatcctagt tttttaagag cttctttgat gagttcgctt
      901 gtgcctgttg cttgagcact tgctaaaaca cttatgattt tttcttgttt aaagcctaga
      961 gtaagaagtg cggctaaggc ttcgctttta tcatcgctta cattttcaag tttggttttt
     1021 gtgtcagaaa gttctactat aatgcgtttt gcactttttg gacctatgcc aggtactttt
     1081 ttaagcacgc tttcatcgcc caaacttaac gctttgtaaa aagaatttac atcaagacta
     1141 gagcataccg ccatagcagt atttgcaccc actccattga cttttaaaag catttcaaac
     1201 attttttgtt catctttatc caaaaagcca taaaatttat tagaatcttc tttgatgatt
     1261 tgagtgataa aaaactcatg cttttcttga gtttgaattt tagcagaaca aaaaagcgaa
     1321 ataaatatcc catagcttaa accactagtg catttaacaa tgataaaagt aggttctttt
     1381 tttgtgatta ttccttcgat gccgacaacc atgctatatc cttttcttca taatctaatt
     1441 ttttatgtat ttctatactt tcttggttgt tttgtatgac ttttttaatg cctataaatt
     1501 tagcactttc attaacaaat gaagagtaaa aaatatcttc tttaggctct agaagtgaaa
     1561 atttgatttc attcatatca gtccatttgc cgcttttatt tataaaagtt gcttcaaaaa
     1621 gcattttttg caaattgatt aattctaatt gtaaagattt tttgcgttca agaagttctt
     1681 tttcttcatt ttgtagttta tttaattcaa gattttgtaa agagaaatct tttagggctt
     1741 tttcgtattg tacaggaaca ttttgacctt gatttttaag ttctgttatc tttttttcaa
     1801 cgcttaaaat tccatttttg cttgataaaa tgtattgtct tattttattt attttatgat
     1861 ttaacttaga aatttgctct cctaaaatcg caaattcttc atcataattt ttatcaagag
     1921 ttttaatttt agcatgaaat ttattgttat ccccgttaat gcgttctatt gtggtgtttt
     1981 caaaaaacac acaagaatta ttactttcta aattttctat atagatttta tcagcttgta
     2041 tatttccgcc taaacttttt ttaattctca cttctttggc tttgattgtt ccaccttcga
     2101 gcaaatctat atttaaaatt tcggcttctg caaatcctct atgagttttt atataggctt
     2161 gtttggcttg aattttggct ttagagtgtg tagtgccttc aattttcatt ttggtggcat
     2221 taagttgagt gttgcttcct acgcttccga ctacatttaa ttcttcacat tctatcccaa
     2281 cgccagaatt tacagcatct tttacttctg aaagaaattt tatattgatt ttgacatttt
     2341 tgtctagtcc agctcttata atccctatat ttttaaaatc taccccatta aaatctagtt
     2401 catttgcaat atcaaatttt tcaccatctt gtactacata accttttttt aaggctatat
     2461 attctgtgta tccatcttgc tctacttgtt taaaagctga agaacaagaa aatttaactt
     2521 tattttcatt tgcggctaaa acttttaagg tgtgcaaatt taagtctttt ccttctttac
     2581 cttgtttaaa tttggcgtgt tttaaaacaa cttcattttc atcaacaaca ataatacctg
     2641 agcgtttttc atcgatagtg tagtttttgg ttttttcttt ataagtcaag atcagggact
     2701 catcttgact ttctatagga tcaatacctt gtgcaacggt gatttgtata gttttattta
     2761 aaggggtgtt tttatgttgg ttgcaaaaag acattaaatt tttcttaaaa tcaaaaatgc
     2821 ggatacctat taaaaattta agtttcaaca tctttttata aatattttgc aaaagttcta
     2881 gtgctagttt ttcatgaaag tctaaatttg taaaatcaat ttgagcaact attttggtta
     2941 aatttttatt tgcaactagt ttgactgctt gagatgcttt gctttggttt ataccgtgga
     3001 aaatttctat tttgtattct tgcttgattt gaagatcatt ttttaaaaaa atttcatctt
     3061 tatcaaaaag aattaattct ttttcagaga ttttttccca ttctaaatct ccaaaacgat
     3121 attgtgtaga aaatgccaat aaactaaaat caagctcatt taagctaagg tttgttcgtg
     3181 aagctacgct taaaagctct cgagctggat tttctgtata ggcaataatt ttttcatcca
     3241 aagccaaaac tttccccttg taaaaaatta agaatgtaat tatagtcaat ttttaatcaa
     3301 ttttagttaa aataattctc tttatatttt gaaatttatg aaaaaattta atgaagagtt
     3361 tagtatttaa aaattttatt atcaatgctt taggaatttt attttcaaga attttagggc
     3421 ttgctagaga tgttttaata gcgctttttt taggagcagg gctttatagt gatatttttt
     3481 ttgtggcttt aaaaatgcct gcttttttta gaagaatttt tgcagaaggg gcttttggac
     3541 aaagtttttt acctaatttt gtaaaagcga aaaaaaaagg agctttttgt gttagtgtaa
     3601 tgatgcaatt tagccttata gtttttttat tttgtctttt ggtaagtttt ttctcctctt
     3661 tttttactaa gctttttgct tttgggttta acgcagatac tatagcttta gcggctcctt
     3721 tggtggcgat taatttttgg tatttgtttt ttattttttt agttactttt ttaggagcta
     3781 ttttaaatta tagacaaaaa tttttcatta cctctttttc tgcggcatta tttaacttaa
     3841 gtattgttat agctgctttt tttgtggata aaaatgcacc gcaaaataca ctttattatt
     3901 tttcttatgc aacggtttta agtggggtgg cacagcttat tttacatttg cttgttttaa
     3961 aaaacaatcc tgtaatccgt gctatggctt taagtataaa atttaaaaaa gccaaggcga
     4021 aattacaagg tttttatggc aatttttttc atggagtttt aggttcttct gcgactcaat
     4081 ttagctcatt gcttgataca actatagcta gttttttaat gagcgggagt atttcttatc
     4141 tttattatgc aaatcgtgtc ttccaacttc cccttgcact ttttgctatc gctctaactc
     4201 aagtttcttt tccaaaaatt ttaaaacatt taaaaagtgg tcaagaaaat ttagccttaa
     4261 aatttatgca aagagcatta gcgcttttaa gcattttgct tattgcttct agtattgtag
     4321 gttctgtgtt tgctttggaa atttcaaagc ttttatttga aagaggaaat ttcactcacg
     4381 aagatagtgt gattacggct tatgttttga ttgcttatct tatagggctt ttaccttttg
     4441 gtttgcaaaa gcttttttct ttgtggcttt atgcaaaatt taaacaaaaa acagcagctt
     4501 ggatcgcggt aaaatcttta attatcagtg ctttatgttc tatggctttt atatttttga
     4561 ttaaagatga aagtttaaag gttattgcag tagcactttc aagctctatt agtgcttttt
     4621 atttgcttgg agctaatatc aaagaattt
//
LOCUS       DAPOLW010000124         4581 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.124, whole genome shotgun sequence.
ACCESSION   DAPOLW010000124 DAPOLW010000000
VERSION     DAPOLW010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4581
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.124"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            176..1214
                     /locus_tag="ROE18_001503"
                     /pseudo
     CDS             176..1214
                     /locus_tag="ROE18_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881065.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
     gene            complement(1249..1890)
                     /locus_tag="ROE18_001504"
     CDS             complement(1249..1890)
                     /locus_tag="ROE18_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HDX3651668.1"
                     /translation="MRKFFCKFVLTLVFCSSFALANNSFITLNPSLPSSENSVIEAFS
                     YKCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEFSKEMNELFAFAQYKDEQNG
                     KDASYSDSLSYKLADVYFVSYFLNKQRNFSNLNEFYDIGLKAMNVNKNEVLNFLNTPK
                     AKEILSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
     gene            complement(1979..3396)
                     /locus_tag="ROE18_001505"
                     /pseudo
     CDS             complement(1979..3396)
                     /locus_tag="ROE18_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315485.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
     gene            complement(3432..4232)
                     /gene="dsbI"
                     /locus_tag="ROE18_001506"
     CDS             complement(3432..4232)
                     /gene="dsbI"
                     /locus_tag="ROE18_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HDX3651669.1"
                     /translation="MSCIKMKDKCRNFSLSKWQDTRKPWLILIIVTIGLTCIAHFLFQ
                     EYLFMKPCEQCVYIRFDMLVMAIGGMIALINPANNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLHEWAPSWFLPTGECGMDTPVVPKNAY
                     NHLNAFQKFFIGTLPDFENGLYSNGWYLIPSLKFMNMAICCLIAFLCCFIVLFAMFIA
                     YVLDKNKPNAKIFALVIVILVLVLKFIGEPKNPNQNIASLNQVVLRYS"
     gene            complement(4229..>4581)
                     /locus_tag="ROE18_001507"
     CDS             complement(4229..>4581)
                     /locus_tag="ROE18_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="protein-disulfide isomerase"
                     /protein_id="HDX3651670.1"
                     /translation="PVKLARSIVVCAFLAGISASALSEGKEYVILKNPIANADNYSVG
                     LKAMNVSKADFENFLKTPEAAELLKSYEIANPISQNYGTPAFVVNGKYQIVPSAINSP
                     EALIEITKELSKQK"
BASE COUNT         1611 a          767 c          665 g         1538 t
ORIGIN      
        1 attatagcga aaaaacttta tttttgcttt aaatatataa gttctatttt aaatataaac
       61 gaatattatt ttaaggttta aagctttttt cttaaaatgt aattaggttt tattgacttt
      121 ttctaaataa agtcttatac tgaatttaaa ttacgcaaaa taaggaggga aattgatgaa
      181 taaattttct atagttttaa ctttgttgtt atgtggaagt tgtgctttag ccttagatcc
      241 aaatttggaa aaaactaaga gtgcaacagg tattgatctg cctactgcca aatggaattt
      301 acctaaggaa ttaaatgaag atggcactat agatgaaact aaaatgccaa aaaattcaga
      361 atatagcaaa atggttattt tgggaaataa aattcttaat gaaacaagca aatatgtggg
      421 tccacaagcc aaagatccta aaaaaagatt tgcgggaaat aatctttctt gttcaagctg
      481 tcatgctaat ggtggaagtg tgcaaaatca atcgggtttt gtaggaattt gggcaagatt
      541 tccacaatat aatgcaagag gagataaagt aattacctta gcagatagga tcaatggctg
      601 taatgcaaga ggagataaag taattacctt agcagatagg atcaatggct gttttgaacg
      661 ctctatgaat ggcaaaagaa tgcctagtga tacacctgaa atgaaagcca tgctaactta
      721 tatgcaatgg ttatctcaag gagttccagt aggagctaag atagaaggat agggacttaa
      781 gaagatagat ttcatcttaa gagcagctga tcctaaaaaa aggtaaggca atttatatgg
      841 ataaatgtgc cgtttgtcat caagaaaatg gcttagggct taaaaatgag gatagcacag
      901 gggcgtatta tctttatcca ccactttggg gtgatgatag ttataataca ggagctggaa
      961 tgtatcgtct tatcaaagct gcttcttata ttaaagaaaa tatgcctcaa ggtgcgcctg
     1021 acttaagtct tgaagatgct tatgatgtag cagcttacat gaattcacaa gctcgtccta
     1081 ttaaagcaaa tagaaataaa gactttccag atagaaaggt taagccttta gatatggatg
     1141 taggacctta tgatgatagc ttttctacaa cccaacatcg ctatggacct tatacaaata
     1201 tgatcaaaaa ataattttta aggcaatttt tattgcctta aaaatttatt atttcatatt
     1261 acttaatttt ttaactagat cttctaaatc ttgcatcgaa ttgattgcac ttgggttaat
     1321 ttgatatttt ccattaacaa caaaagcagg ggtgccatag gttttagcta tatcattagc
     1381 tctttgaaac tcgcttaaaa tttctttagc ttttggggta tttaaaaaat ttaatacttc
     1441 atttttattt acattcatag cctttaaacc tatgtcgtaa aattcattta aatttgaaaa
     1501 atttctttgc ttgtttaaaa aataagaaac aaaataaaca tcagcaagtt tataagataa
     1561 actatcagaa taactcgcgt ctttaccatt ttgctcatct ttgtattgag caaaggcaaa
     1621 aagctcattc atttctttgg aaaattcccc attcattaaa cttacaggat agagtttaaa
     1681 atgtaaattt ggaaaagctt ctctcagttt ttcaagggtt ccaaatttat gatgattgta
     1741 acaatgtata catttataag aaaatgcttc tattacacta ttttcagaac taggtaaact
     1801 tggattaaga gtaataaaac tattatttgc taatgcaaaa cttgaacaaa atacaagcgt
     1861 taaaacaaat ttgcaaaaaa atttacgcat attatatcct ttagttaaat aaaattttca
     1921 aagataattt tatttaaaaa aaataaataa gccgccaaaa tttatttttt ggtaattttt
     1981 attgatcaac actaaaaggc attgcttgat aacccgttcc tgaaccgcta aattgaattt
     2041 gaaccgaagg ctccttggca ccccagttaa attcatcaat ttcaggtttt ggctctccaa
     2101 aacttacacc tttactaaga tcaaaagcca ttcaggctgt tgcactataa accataatag
     2161 aatctttatc tggttcatat tgagttaaag aagttacagg agaaaaccat tcatttccat
     2221 ttttatctac aggttgcaat aaatattttt gaaattcttt attccaccct ttatatgcgc
     2281 ccaattccta cctatacctg ctatatctcc aaatttgtcg ctttcatcca ttttggcaag
     2341 ctcttcatcg cttaaagttt tacccacttt acttgcatct atatttaaac acactgcact
     2401 ttgatctaaa gttttgataa tagtacttct ataaggatct aaaatcttat acaatctcca
     2461 atcatcaaca acattaccat tctcatctac ttctataata gtatcacaca ctgtgcgtac
     2521 atgcttacta tcttggacgc aaagtatttg ttgaagaaat aatgcccatt ttgcatattg
     2581 tccatagcat gagaaaaaat ctatatagac agcaggtaat ttgcgattga aaatttctct
     2641 tcccagacat cgtattttac atatctttga ccaaatcccc aagttaaagc tccatctttg
     2701 ttttgacgaa aactcatcat aattccacga ttgtaaatat tgtcccagtt cattagttta
     2761 ttgttatcat aataccatct gatttcaccc ttggtatctt atgataaaga catttgaatt
     2821 ttcatcccat tccatagcac cacctacaag attattccat acagattatg agtctttgcc
     2881 agattatttt ccaggagcat tatttactaa atatagccta tctgaaaatt ttggatccat
     2941 ttttaatact ttcacatttt caaaaagagt tcctctttga tcagtgcctt ctacttggtt
     3001 ctatactaac ccctggagtt gtaattttat aaatctcatc aatgattttt tgacttttac
     3061 tatttgtaga tttagcataa cttaccttta ctataagaag gataaagtcc aaaaatagga
     3121 attccaccat aagtcttagc cattttagaa ttcacattat taagaaatag tttgaccatt
     3181 tgattttttt atatcgctta agacataacc attattcatg ataatagcgg tcaaaggaga
     3241 caatccataa ggattcattt taatcatacc catttgtcct tgaatttgcc aatctatttt
     3301 cactccatta ggatcaccca tggccattaa agcattaggt gcaagcagga tagaacacgc
     3361 caaaagtgcc atgcaaagag ttttgctaag tctcatgata aatcctttaa aattatttaa
     3421 gccatcctat tttaagagta tcttaaaacg acttgattta aactagctat attttgattc
     3481 ggattttttg gttcgcctat aaatttaagc actaaaacca aaataacaat caccaatgca
     3541 aaaattttag cattaggttt atttttatct aaaacatagg ctataaacat tgcaaaaagc
     3601 acaataaaac aacataaaaa tgctataaga cagcaaattg ccatattcat aaactttaaa
     3661 ctaggaatca aataccaacc attgctataa agcccatttt caaaatcagg tagagttcct
     3721 ataaaaaatt tttgaaaagc attgagatga ttataagcat tttttggaac tacaggggta
     3781 tccatcccac attctcctgt tggcaaaaac caactaggag cccactcatg caaaggtaaa
     3841 ttaaatggat aaataggaat ttcacgacat ccatctacgc ctgcaaaagg attttcagaa
     3901 tgaaccactt catggatatg atttaaagtt agacaatgct ccaagccaag ccaaattcca
     3961 taaaaagcta agctataaga aaaaattttt ataatattat ttgcagggtt gattaatgca
     4021 atcataccac ctatagccat aacaagcata tcaaatctta tatacacaca ttgttcacaa
     4081 ggtttcataa aaagatattc ttgaaataaa aaatgtgcta tacaagtaag tcctatagta
     4141 actataatca aaatcaacca aggtttgcgc gtatcttgcc atttggaaag tgaaaaattt
     4201 ctgcatttat ctttcatttt tatacaactc atttttgctt gctaagttct ttagtaattt
     4261 caatcaaagc ctctggagag ttgattgcac ttggaacgat ttgatatttt ccattaacaa
     4321 caaaagcagg ggtgccataa ttttgcgaaa taggattggc aatttcataa ctttttaaaa
     4381 gctctgcagc ctctggagtt tttaagaaat tttcaaaatc agctttactt acattcattg
     4441 cttttaaacc gacactataa ttatcagcgt tagcaatagg atttttaaga attacatatt
     4501 ctttaccttc acttaatgcg ctagcactta tacctgctaa aaaagcacat acaacaatag
     4561 atcttgctaa ttttactgga a
//
LOCUS       DAPOLW010000125         4563 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.125, whole genome shotgun sequence.
ACCESSION   DAPOLW010000125 DAPOLW010000000
VERSION     DAPOLW010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4563
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.125"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            52..1038
                     /locus_tag="ROE18_001508"
     CDS             52..1038
                     /locus_tag="ROE18_001508"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDX3651671.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNY
                     KQDIKIHLKIDTGMHRNGICVENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLS
                     LYAHRLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFRYNGRGELVLGNGKT
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            1041..1508
                     /locus_tag="ROE18_001509"
     CDS             1041..1508
                     /locus_tag="ROE18_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HDX3651672.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFRNFAS"
     gene            1612..3078
                     /locus_tag="ROE18_001510"
     CDS             1612..3078
                     /locus_tag="ROE18_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HDX3651673.1"
                     /translation="MKLDIMLDFANKASDIIANKIVPNTDIIMVVLLIVCGLYYSFLT
                     RFVQFRMLSSVFKILTEKNEGHAKEHISPFQALMISTASRVGIGNIAGISLALATGGA
                     GALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIKKALGSHFFGAFFA
                     FILIITYAYGFNGLQSQTMTSSFKVYYDMFNPNAAVDFASSSWPMIIGIVLTIFGAWM
                     FFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVVHMILQSAFDFKAIFGG
                     FAGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLIDVVVCTSSG
                     FLVLFSMAYLGLGESKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYY
                     AQANVKYLTNSKFVMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTNIISLLL
                     LGGIVNKVLKDFNTQQKSGIDPKFNASKLGIKNAECWD"
     gene            complement(3106..3834)
                     /locus_tag="ROE18_001511"
     CDS             complement(3106..3834)
                     /locus_tag="ROE18_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDX3651674.1"
                     /translation="MIEVKNLQKKYGELEVLKNINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLELADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKLLLAKVGLADKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNVANRIFFMDKGKIAVDA
                     SPKEVFENPSNERLREFLNKVLNH"
     gene            complement(3827..4555)
                     /locus_tag="ROE18_001512"
     CDS             complement(3827..4555)
                     /locus_tag="ROE18_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009650248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDX3651675.1"
                     /translation="MRIFVFFVIIILWGYFSFPIEILKIQDPSGVVSYGYTENAKAYL
                     KSYLITLLLTACAVIIGVIIGFSLAILHFSKFKTLNFIIDEYIDIIRGTPVILQLMIF
                     AFVIFTFIDNLYAAILALGLNSSAYIAEIVRSGINSVDKGQMEAARAMGLDYKTSMKE
                     IILPQATKNILPALANEFISLFKETSVVGFISVIDITMQSQSLQAVLYNPKPIIFTGL
                     VYYVSVKIFSYFAKKLELRMNKND"
BASE COUNT         1506 a          607 c          768 g         1682 t
ORIGIN      
        1 tacgttaaga tagatagtaa aggtaaaatg aaaattttag cagagcaata aatgtcttta
       61 ataaaaattg atcaaaaagc ttatgaatac aatttaagac atattgctaa aaaaataggg
      121 agttttcaaa gattaatttg tgtttttaaa gataatgcat atggacatgg agctaagctt
      181 ttagctccat tagccaaaaa tttaggagtt tcttttgttg ctgttaagag tgaagaagaa
      241 gctcgagaaa tcgaagaatt ttttgagaat atattaatac tatcacatcg tcctcatggt
      301 aatgaaaatt ctcgatttat ttatgcttta aatgacattt ctcaagtaaa aaattacaag
      361 caagatataa aaatacatct aaaaatagat acaggcatgc atcgcaatgg aatttgtgta
      421 gaaaatttag agcatgctat aaatcttatt caaggtagtg atttaaaact tactggaatg
      481 tttacacatt ttgctagtgc agatgaaatg gatggaagtt tttttgttca aaaagaaaat
      541 tttcaaaaag ctaaaaagat agtaaaaaaa tatttttcaa atttattatt tcattcgtat
      601 aattctgcag cattatttag agggaaaatt cctgaagatg aatattgtag agttgggctt
      661 gttcaatttg gatatgggga ttcaaattta aaaagagttt taagtttgta tgctcataga
      721 ttaagtcaaa ggattttaca aaaaggacag agcataggat atggaggcat ttttactgct
      781 gcaaaggata tggaagtagc aacttatgat ttgggttatg ctgatggtct ttttcgctac
      841 aatggaaggg gggagttagt gcttggaaat ggaaaaacaa tgcttggaaa gatgtcaatg
      901 gatagttttt cttgtgaaaa ttctggcgag gaaatttgcg tgtttaaaga tgctgatatt
      961 tgggctgatt tttttcatac tattaactat gaaattttag taaaattaaa tcctaatatt
     1021 caaagagttc tagtataaat atgtttaata tagttttagt tcaccctaga ataccgcaaa
     1081 atacaggtag tataggtaga atgtgcttta atgctggttt taaacttcat attgttaaac
     1141 caactgtttt tgatatttca caaaaggctg ttagaagggc aggacttgat tactgggata
     1201 aattagagcc tattatttgg gagaatcttg aagaattttt gaatgaaaat atgatttata
     1261 aaaatcgctt ttttttcgca acaactaaga gtcaaaaagc ttattttgat gcagaatttc
     1321 aaaaaaatga tttcttattc tttggaagtg agagttatgg tttgcctatg gaattaatgc
     1381 aattaaattg ggaaaatgct ataactatac ctatgaaatc ttatggaaga agtttaaatt
     1441 tagccacaag cgttggtata atctcttatg aagctttaag acaaaatttt agaaattttg
     1501 cttcttaaaa gttttaaatt tacacaatag cttaaaacaa ataaaatcat aaagtccttt
     1561 ttataaaaat tatgttaaag taaaatttag attatttttt gaggagtttg gatgaaatta
     1621 gatattatgc tagattttgc caataaagcg tctgatatta tagctaataa gattgtccca
     1681 aatacagaca ttattatggt agttttactt attgtttgtg ggctttatta tagtttttta
     1741 actcgctttg ttcagtttcg tatgttgagt tctgtattta aaattcttac agaaaaaaac
     1801 gaaggacacg ctaaagaaca tatttcacct tttcaagcat tgatgatctc aactgcttct
     1861 agagttggta taggaaatat tgctggaatt tctttggcat tggctacagg tggagctggt
     1921 gctttatttt ggatgtgggt tatggcattt tttggtggtg cctcagcatt tgctgaaagt
     1981 accttagctc aagtttacaa atcaaaagat gatacaggcg ggtttaaagg tggtccagct
     2041 tattatataa aaaaagcctt aggctcacat ttttttggag ctttttttgc ttttattctt
     2101 attattactt atgcttatgg atttaacgga cttcaaagtc aaacaatgac ttcgtctttc
     2161 aaagtttatt atgatatgtt taatccaaat gctgctgtag attttgcatc aagttcttgg
     2221 ccaatgatta ttggtattgt tttaactatt tttggtgcat ggatgttttt ttctcaccat
     2281 actaaaatag gtaaaattag ttctttaatt gttcctttta tggctttagc ttatgtttta
     2341 cttgctgtga ttgctgtttt aatgaatttt gataaaattc cttctgtggt tcatatgatt
     2401 ttacaaagtg cttttgattt taaagcgatt tttggtggtt ttgctggttc tgctttggtt
     2461 atagggatta aaagaggact tttttcaaat gaagcgggta tgggctcggc acctaatgca
     2521 gctgcagcag ctttgacaag tcatccagct aaacaaggtg ttatacaagc cttttcagtt
     2581 ttaattgatg ttgttgtttg tacaagttct ggatttttag ttcttttttc tatggcatat
     2641 ttaggacttg gagaaagtaa aattgatggt ggaatgcctt tagttcaaga agctatgcgt
     2701 gagtattacg gtagctttgg aatccatttt attactatag ctattgttct ttttgcaata
     2761 acttctttaa taggaaatta ttattatgct caagctaatg ttaaatattt aacaaattcc
     2821 aaatttgtaa tgaatttgtt tagaattaca gctgtggcta tgatttttat aggctcgcaa
     2881 atgaatttaa aacttgcttg gaatttggct gatttgacta tggctttcat ggcaacgaca
     2941 aatattatat ctttattgct tttaggtggt atagtaaata aagttttaaa agattttaat
     3001 acgcaacaaa aatctggtat agatcctaaa tttaatgcta gcaaacttgg aattaaaaac
     3061 gctgaatgtt gggattaaaa ttcataagcc ttagtggctt atgaattaat gatttaaaac
     3121 cttgtttaaa aattctctca atctttcatt gctaggattt tcaaatactt ctttagggct
     3181 tgcatcaaca gcaatttttc ctttatccat aaaaaatata cgattggcaa catttctagc
     3241 aaagcccatt tcatgagtta ctacaagcat agttaaacct tcttttgcaa catctttcat
     3301 aatgcttaga acctcgccta tcatttcagg atctagagct gaagtaggtt catcaaataa
     3361 aataacatca ggattcatca tcaagcttct agcaatagct atgcgttgtt tttgtccgcc
     3421 agagagctta tggggcatta tattttcttt gtctgctaaa cccaccttag caagaagtaa
     3481 ttttgctttt tttatggctt cttcttgact taaaattcct gttttaatgg gcgttaaaca
     3541 taaattttcc ataacatttt tattagcaaa aagattaaaa tgctgaaata ccatgctaac
     3601 tttttgcctg atcttattaa tatcaatttc tttatcaagt atgttttgct tattgattaa
     3661 aatttcccca ctatcagcta gttctaagcg attgatgcag cgtaaaaatg tactttttcc
     3721 gcctccactt ggacctatga tagctattac atcgcctttt gagattgtag tgttaatatt
     3781 ttttaaaact tctaattctc catatttttt ttgtaaattt ttaacttcaa tcatttttat
     3841 tcatcctaag ttcaagtttt tttgcaaaat agctaaaaat ttttacactt acataataaa
     3901 caagtccagt gaaaataata ggttttggat tgtaaagtac ggcttgcaag ctttgacttt
     3961 gcatggtaat atcaataaca ctaataaatc ctacaacaga agtttcctta aataaagaaa
     4021 taaattcatt agctaatgca ggtagaatgt ttttagtagc ctgtggaaga ataatttctt
     4081 tcattgaagt tttgtaatca agtcccattg ctcttgcagc ttccatttgt cccttatcta
     4141 cactattaat gccacttctt acaatttctg ctatataagc cgagctatta agtcctagtg
     4201 caagaatggc tgcataaagg ttatctataa aagtaaaaat tacaaaagca aaaatcatca
     4261 attgtaaaat tactggtgtt cctcgtataa tgtctatata ttcatctata ataaaattaa
     4321 gcgttttaaa tttagagaag tgtaaaatag ctaaactaaa accaataatc actccgataa
     4381 taacagcgca agcagttaat aaaagtgtaa taagataact ttttaaataa gcttttgcat
     4441 tttctgtata gccatagctt acaactccac taggatcttg aatttttaat atttctattg
     4501 ggaaagaaaa atagccccat aaaataataa taacaaaaaa aacaaaaatt cttatatttt
     4561 tct
//
LOCUS       DAPOLW010000126         4558 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.126, whole genome shotgun sequence.
ACCESSION   DAPOLW010000126 DAPOLW010000000
VERSION     DAPOLW010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4558)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4558)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4558
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.126"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(48..557)
                     /locus_tag="ROE18_001513"
     CDS             complement(48..557)
                     /locus_tag="ROE18_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HDX3651676.1"
                     /translation="MHFTIFHIIAFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVSGKVQNLTKFEIKKCYLILS
                     ILNQQQVGGEIFNDKNIRNAKMQNTSVSYTIEIIDTLPGNTYKEFRASVPFPPTFNNP
                     EFYHTLKCI"
     gene            complement(557..1087)
                     /locus_tag="ROE18_001514"
     CDS             complement(557..1087)
                     /locus_tag="ROE18_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HDX3651677.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKIAITDQKMIQSSNDLIVDFNITNNS
                     KNNFKECKITAKIFADKIPNDNIIEEYKKKFIPFRQKSREIKDLKKNATQVQRIAFEN
                     FNYENNYTIRLVSECF"
     gene            complement(1099..2187)
                     /locus_tag="ROE18_001515"
     CDS             complement(1099..2187)
                     /locus_tag="ROE18_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HDX3651678.1"
                     /translation="MPADLNDYFNKKNGNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FVYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFVQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIATQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDAKKQSAANMN"
     gene            complement(2200..3114)
                     /gene="ilvE"
                     /locus_tag="ROE18_001516"
     CDS             complement(2200..3114)
                     /gene="ilvE"
                     /locus_tag="ROE18_001516"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HDX3651679.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKELENAQIELLKANNFKSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQDTVLKIAHDLGITVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     SVTKKLQDAYFDVVYGRNEKYASMLTYI"
     gene            3291..3497
                     /locus_tag="ROE18_001517"
     CDS             3291..3497
                     /locus_tag="ROE18_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HDX3651680.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITELLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKASK"
     gene            3494..3949
                     /gene="bcp"
                     /locus_tag="ROE18_001518"
     CDS             3494..3949
                     /gene="bcp"
                     /locus_tag="ROE18_001518"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HDX3651681.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSANYDKFGGKNAVIIGISPDSVASHEKFISKFDLKHILLSDSEKEVAKAY
                     GALGLKKNYGKEYEGLIRSTFVIDETGKIAQIYSNVRVKDHALKVLESL"
     gene            3949..>4558
                     /locus_tag="ROE18_001519"
     CDS             3949..>4558
                     /locus_tag="ROE18_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HDX3651682.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECEPYGVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSSVNKQILPVSIEA"
BASE COUNT         1519 a          647 c          751 g         1641 t
ORIGIN      
        1 gtgaataatt aatgtatttt agaatttttg ctagttgatt tcttgaatca aatacatttt
       61 aaggtgtgat aaaattcagg attattaaaa gttggaggaa aaggaacgct agctctaaat
      121 tctttatagg tattacccgg gagtgtgtct atgatttcta tagtataaga aacacttgta
      181 ttttgcattt tagcgttacg gatattttta tcattgaaaa tttcacctcc tacttgttgt
      241 tggtttaata tgctaagtat caaatagcat tttttgattt caaatttagt aagattttga
      301 acttttccac ttactataac gctttcatgt cttagatctc ttgtgtaggt tagtttgcta
      361 agatcggctt gagtggtgaa ttgattgatt gttagaaaaa tagaatatat caaaagtgcg
      421 gtaaaaatag tagctatggt ataagaaatc aaagccattt ctttctgttt gacttttaga
      481 aagattaaaa tacaaatcaa ggcaaagcaa ataagtaaaa tgataaaagc tataatatga
      541 aaaatcgtaa aatgcattaa aaacactccg aaactaagcg tatggtatag ttattttcat
      601 agttaaaatt ttcaaaagca attctttgaa cttgggttgc gtttttcttt agatctttaa
      661 tttctctact tttttgtcta aaagggataa atttcttttt atattcttct atgatattat
      721 cattaggtat tttatctgca aaaattttag ctgtaatttt acattcttta aaattatttt
      781 ttgaattatt tgtaatgtta aaatcaacaa ttaaatcatt tgagctttgt atcatttttt
      841 gatctgtaat agcgattttt cgagttctta cttcattgtc tattagttta tacccataga
      901 tataaactaa aaaacaaata ataatatcaa atgcaataat aaaaagtgct gctataggtc
      961 tatggcgtaa aaatacacaa agaagtaaaa cacaagtgaa gagaaaaaaa actaataaaa
     1021 tcagcatata atctactaaa tataaatgag tagtgtaaaa aagcacgatt tctcttagtt
     1081 tctccacttg tgtatccttt agttcatgtt ggcagcactt tgctttttag catctttggt
     1141 atcaacccaa atgtttggca ctgctccacc tggagttaag aaaattttag catcttgatt
     1201 gacttttaaa gcttcattaa attctttttg agtttcaatt tgttttaaat ttagcaaagg
     1261 ggtgtttagg ctgtttgcga tttctttgtt agaataagct tgtgcatctg cttctatttt
     1321 aacagccata gctttacctt tggcgctgat tatggttgca tttgcttccc cttcagctaa
     1381 agcagctttt tttaaggctt cttgattagc tctttctact tcatatttag ttctttcagc
     1441 ctcttgtttt gcaatttgca cgcgttcgat ttgttctttt acttttgaag gtaaaataat
     1501 ttctctaagt tgtacagcgc gaagttctac aggttcattt ggttgggctt ctatggtttt
     1561 tcttatacct tcttctattt gagtggctat tgtattacga ttagtaggaa gttcttcggc
     1621 tgtgtatttt cctacaacac ttcgcactac atcacgaaca actggatcga taattttatt
     1681 ttcccaattt aagctccaag tagctatagt ttgaggaact tgcaaaggat ttaagcggta
     1741 ttgtactgta acatcaatag atacaggcaa tccacgagag tcaagtacag aaatactatt
     1801 tttattaata acacctgaac ctgaagataa attttcatta cttccctcta tagaagcata
     1861 gttgatttgt cttactctag tatcgattat ggttattttt tgtacaaaag gtaagaaaaa
     1921 gtgaagtcct ggttctaatg gatttgggtc atatttacct gttgttgatt taatccccat
     1981 ttccccagaa tttatcacca taaaaggttt tgcaacgatt aaaaataaga taataataat
     2041 caccccataa acaaatggag agaattttcc aaaaccttta aaattaaatt ctggtgcttt
     2101 gaaattgaaa ttttgacggt tgttgtttcc gttattgtta gaatttccat tttttttatt
     2161 gaaataatca ttcaaatcag ctggcattta tttccttttt taaatataag ttagcataga
     2221 tgcgtatttt tcattgcgtc cataaactac atcaaaataa gcatcttgaa gttttttagt
     2281 tacagatcct cttaaaccat ttcctattat tcttgcatca atattattaa taggtgtgat
     2341 ttcagcggct gttccggtaa aaaatgcttc atcagcagta taaacttcat ctcttgaaat
     2401 tctttggcga agcacagtaa taccaagatc atgagcgatt ttaagcactg tatcttgagt
     2461 aatgcttttt aaagaaaaat catttggagg tgtgattaaa accccatctt ttacaataaa
     2521 gaaacattct cctgttcctt ctgcgataaa accttcttca tcaagcatca aagcttcttc
     2581 atagcctgct tcaatagctt caaattttgc aatttgagag ttaagataat tcgcacttgc
     2641 tttagctttt cccatgcatg atttaacact atttcttgca aaagacgaaa tttttacttt
     2701 tatacctttt tctaaacctt cttctccaag gtaagcaccc cattcccaag ctgcaatccc
     2761 aactcttaca ggagctttta tatgataaag tcccataact ccatcgccta agaaaatcaa
     2821 agggcggata tagacattgc ttttaaaatt gtttgctttt aagagttcaa tttgtgcatt
     2881 ttcaagctct ttttgagaaa aaggacaatt taaaagagta atttttgcag actctaaaag
     2941 tcttttggtg tgatcttcaa gtctgaaaat tgctaagcct ttatctgttt tataggctct
     3001 agttccttca aaaacagcat tgccataatg caaagaatgg gttaaaaagt gcaaagttgc
     3061 atctttaaaa tcaactaatt ttccatccat ccaaatttta tctgctgaga tcattttttt
     3121 accttttata gttgtttatt tcttaaaaaa tattatttta agaataaatc gggattttat
     3181 caaaaatata ctaataataa gcttttatta aattaagctt ttttgttaaa aaaaatatta
     3241 ggtatttttt gaaataatta tgaaaaatta tcgttaaaaa aggagaaatt atgccattag
     3301 taaatatcaa attagcaaag ccgtctttaa gcaaggagca aaaagcggaa cttatagctg
     3361 atattaccga acttttaagc acgaaatata ataaaagtaa agaaagagtt gttgtggttt
     3421 tagaagatgt ggaaaattat gacataggct ttggcggaga aagtgtagaa gctatcaaag
     3481 caaaggcaag taaatgagtt taaatatagg agataaggca cctcaatttg agcttttaaa
     3541 tcaagatggg gtaaaaatag cattaaaaga ttttattggc aaaaaggtga ttttgtattt
     3601 ttatccaaaa gataataccc caggttgcac tacagaagct tgtgatttta gtgcaaatta
     3661 tgataaattt ggtggtaaaa atgcggtgat tattggtatc agtcctgata gcgtggcaag
     3721 tcatgaaaaa tttatctcta aatttgattt aaaacatatt ttacttagcg atagtgaaaa
     3781 agaagttgct aaagcttatg gagctttggg gcttaagaaa aattacggaa aagaatacga
     3841 aggtcttatt cgttctactt ttgttatcga tgaaacaggt aagattgctc aaatttatag
     3901 taatgttcgt gtaaaagatc atgctttaaa agtgcttgaa agtctttaat gctagtacat
     3961 atttgttgta gcgtggatag tcattatttt attgaagaac ttagaaagac ttatcctgat
     4021 gaaaaaatta taggatactt ttatgatcca aatatccatc ctttaagcga atacgaacta
     4081 agatttttag atgtaaaaag atcttgtgat aaacttggta ttaagcttta taaaggtgag
     4141 tatgagtatg aaaaatggct taatgctgtg cgtggttatg aagatgagcc tgaaaagggt
     4201 gcaaggtgtg aaatttgctt tgatgtaaga atgggatcta gtgttaaatt tgctgctaaa
     4261 ataggagaaa aaaagcttac tactacgctt ttaaccagcc ctaaaaaaga tttagaacag
     4321 ttaaaaaatg ctttacaaaa agaatgtgag ccttatggag tagagttttt agctcctgat
     4381 tttcgtaaaa atggcggcac tcaaagacag tttgctttag caaaaaagga aatgctttat
     4441 catcaaaact attgcggctg catttatggg cttaaaaaac aaaaacaaga taagaatttt
     4501 attgatgaat taatgtcttc tgtaaataag caaattttac ctgtaagtat agaagcaa
//
LOCUS       DAPOLW010000127         4558 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.127, whole genome shotgun sequence.
ACCESSION   DAPOLW010000127 DAPOLW010000000
VERSION     DAPOLW010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4558)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4558)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4558
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.127"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..113
                     /locus_tag="ROE18_001520"
     CDS             <1..113
                     /locus_tag="ROE18_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDX3651683.1"
                     /translation="QKRKSFMQENSISYPCGNKVFIFKDVGDKFELVIKD"
     gene            complement(127..348)
                     /locus_tag="ROE18_001521"
     CDS             complement(127..348)
                     /locus_tag="ROE18_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDX3651684.1"
                     /translation="MTKTEFLEELKEAMHRDEDLNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFTLKITAEDLKNCQKVSDLINLAKLD"
     gene            complement(348..1409)
                     /locus_tag="ROE18_001522"
     CDS             complement(348..1409)
                     /locus_tag="ROE18_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HDX3651685.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     VIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACY
                     LHQLLNLSSKTVAFDLGQACAGYLYGLFVAHSLIQSGLGKILLICGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNEAFFELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPTLLCELDTPKEFKASLSAFGAGLSWGSA
                     VLNFKDLYTKNILIYTKEK"
     gene            complement(1399..2961)
                     /locus_tag="ROE18_001523"
     CDS             complement(1399..2961)
                     /locus_tag="ROE18_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDX3651686.1"
                     /translation="MNLFSPHLKRNELIKFAKELDFSKSQDLLINVHRNHAFEGVQSI
                     IAPFLHFANLRAEFNFSSYDDSLSFDNFKEASLELLWLDLTRYKNNMQNFIEERLLEL
                     RKISQNPILVLSLGEFKTDKKILNCEIFNIEKLIKEYFDEEDILDLAKEELTGSKLNN
                     KALIFLAQILGLSLIPALVKPALKALVLDLDNTLYQGILGEEGIDNLNLSPLHKTLQE
                     KIKTFKKQGFLLALASKNEEKDAKKLFEIRKDFILQWDDFDARMINWEPKGENILKIA
                     KKFNINTNAMLFIDDNIAELENTKITGVKTLLCDENILYKIKLFPNLLKLSNTKEDQI
                     RAKDIAANALREELKSLSDEEYFQNLEISLNFSKNDLQNIPRISELLGKTNQFIANYT
                     RLNQEKVAQHMQKELIVSVSMSDKLSDSGIIAIFVFSCKEGNLFIDDLCISCRALGRK
                     LETRMFFKAFELALHFFDLKNNNARLYYQKGERNMPFLSFLEQISKEFEKNSALIPFQ
                     NLNFKGLIIHEN"
     gene            complement(2958..3374)
                     /locus_tag="ROE18_001524"
     CDS             complement(2958..3374)
                     /locus_tag="ROE18_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDX3651687.1"
                     /translation="MLNTTLNLPLHHIGVACKNLEKERECFFKLGFYKESEFIDEKQG
                     VRGEFIIPCNEAFPQYRFELLQNLNDKGPLDSYLKNNTKMYHLAYESKNIAQDLILLE
                     QQGGICIVPIMQASYFAKLCFIMMPNRLLIELVELK"
     gene            complement(3367..4260)
                     /locus_tag="ROE18_001525"
     CDS             complement(3367..4260)
                     /locus_tag="ROE18_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDX3651688.1"
                     /translation="MKENIEKLFQAIAQKNPIHSKYLKKIEFPQEDEEEFDKLISYYI
                     QDGISIKEQCDCYLLILNDTLEETKFFIENGAYRYSSFDEVKDKVYFNESYMKQYMIG
                     LALSSFVWIAHIKVRKYFSQYLKNFTPKTTYFEIGPGHGEYFARAVKSGKFSAFYGLD
                     ISPTSCELTQKMVKQQVGGLITKCDFLCQDFFIYDFDKKADLIVIGEVLEHVEKPLEF
                     LKRSKELLSDGGEIFATIPINAPAIDHIYLFSHPDEVKDLIEKSGLKFKAYECFMAND
                     YSLEKALKFKNAITMAVVLNA"
     gene            complement(4257..4487)
                     /locus_tag="ROE18_001526"
     CDS             complement(4257..4487)
                     /locus_tag="ROE18_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDX3651689.1"
                     /translation="MEKQFYEILENILETKVDENTNLSMENCKNWTSLAHIDIIMSLE
                     EEFEIKFNKEDLSLLKSQSTLLEKIQTLKAEK"
BASE COUNT         1496 a          715 c          636 g         1711 t
ORIGIN      
        1 tgcaaaaaag aaaatctttt atgcaagaaa attccatctc ttatccttgt ggaaataaag
       61 tgtttatatt taaagatgtg ggtgacaaat ttgaattagt gataaaagat taaaacctta
      121 aaggttttaa tcaagctttg ctaaattgat taaatcactt actttttgac aatttttcaa
      181 gtcttcggct gtgattttta aagtaaaaag atttttataa agcaccatca cagatacaaa
      241 agccaaacta tcccactcat ctatatcatc aagtagcata tcttcattta agtcttcatc
      301 tctatgcata gcttctttaa gctcttctaa aaattcagtt tttgtcatta tttctccttt
      361 gtgtaaatta aaatattttt tgtgtataaa tctttgaaat tcaacaccgc acttccccag
      421 ctaagccctg caccaaaagc acttaaactc gctttaaatt cttttggagt atctagttcg
      481 caaagtaggg taggtagtga acaagcgctt aaattagcgt atttttccat gataaaatta
      541 ggaactttat catcattaag ttttaattct tctttgatgc aatcaaccaa atacgcattg
      601 gattgatgaa aaagatgaaa agcaatgtct ttttcatcta ctttagaaaa ttctaaaatt
      661 tctttaaagc ttttaggttc gcattccaaa gccatattga aaatatttgc tccgtccatg
      721 taaaggtttt ctaattgtct aaactcctca gtttgcatga gcgaatcatc gttaaaaata
      781 tctgctttag gtattctcat cgcacctttt ggaatgatga gtttatcaaa atattttcca
      841 tcgcttccaa gctcaaaaaa agcttcgtta aaatccgttt tttcaattaa agttgcactt
      901 actccatcac caaaaatagg agctaaattc atatttttag ggtggatgaa tttgcttaaa
      961 gtatctccac aaatgagtaa aattttacct aagccacttt gtattaaaga atgagcgaca
     1021 aataagccgt ataaataccc tgcacaagct tgccctaaat caaaagctac agttttggag
     1081 cttaaattta aaagttggtg taaataacaa gccgtagaag gcatgaaaaa atcaggactt
     1141 tgagttacta cgatgagtgc atcaaggcta tttttatcta tatttaaacc ttgtaaaagt
     1201 gtattggctg cgtgttttcc aagatcgctt acgcaagtgt tttcatcgca aatataacgc
     1261 gtgtttaaac ctatgacttt tttcattctt ttaagggttt tgatatcgtt tgaaaaaacg
     1321 ctttctaact catcatcaat gcaaatttta tgttcaggta cgcttacgca aatgcctgaa
     1381 attttagctt tatcaaatct agttttcatg gattataagt cctttgaagt ttaaattttg
     1441 aaatggaata agggctgagt ttttttcaaa ttctttggaa atttgttcta aaaagctcaa
     1501 aaatggcata tttctttcgc ctttttgata ataaagcctt gcattattgt ttttaagatc
     1561 aaagaaatgt aaagctagtt caaaggcttt aaaaaacatt ctagtttcaa gttttctacc
     1621 taaagcccta caagaaatgc aaagatcatc gataaataaa tttccttctt tacaagaaaa
     1681 aacaaaaata gcgataatcc cactatcgct taatttatca ctcatactca cacttacaat
     1741 gagttctttt tgcatgtgtt gtgcgacttt ttcttgattt aagcgtgtgt aattagcgat
     1801 aaattgattg gttttgccta aaagttcgct aatgcgaggg atattttgca gatcattttt
     1861 gctaaaattt aagctgattt caagattttg aaaatattct tcatcgctta agcttttaag
     1921 ctcttctctt aaagcattgg ctgctatatc tttggcacga atttgatctt ctttggtatt
     1981 tgaaagtttt aaaagattag gaaaaagttt gattttataa agtatatttt catcgcataa
     2041 aagtgtttta acgcctgtaa ttttggtatt ttcaagctcg gcgatattat catctataaa
     2101 aagcatagcg ttagtattta tattaaattt tttagcaatt tttaagatat tttcaccttt
     2161 tggctcccaa ttgatcattc tagcatcaaa atcatcccat tgtaagatga aatctttcct
     2221 tatttcaaaa agtttttttg cgtctttttc ttcatttttt gaagctaggg caagtaaaaa
     2281 cccttgtttt ttaaaagttt taattttttc ttgtaaggtt ttgtgcaaag gacttaaatt
     2341 aagattatct ataccctctt cacctaaaat tccttgatac aaggtattat caagatcaag
     2401 tacaagagct ttaagagcgg gttttacaag tgcagggatg agactaagtc ctaaaatttg
     2461 tgctaaaaaa atcaaggctt tattattaag cttagagcct gtaagttctt ctttagctaa
     2521 gtctaaaata tcttcttcat caaaatactc ttttatgagt ttttctatgt taaaaatttc
     2581 acaatttaaa atttttttat ctgttttaaa ttctcctaaa ctaagaacta aaatagggtt
     2641 ttgtgaaatt tttcttagtt ctaaaagtct ttcttctata aaattttgca tattattttt
     2701 atagcgggtt aaatctagcc ataaaagttc taaactagct tctttaaagt tatcaaaact
     2761 caagctatca tcataagagc tgaaattaaa ctcagctctt aaattagcaa aatgtaaaaa
     2821 aggagcaatg atactttgca ctccttcaaa agcatgattt ctatggacat taataagaag
     2881 atcttgactt ttactaaagt ctaattcttt ggcgaatttt ataagctcat tgcgttttaa
     2941 atggggtgaa aaaagattca ttttagctcc acaagttcga ttaaaagcct atttggcatc
     3001 atgataaaac aaagtttagc aaaatagctt gcttgcataa taggaacaat acaaatgcct
     3061 ccttgttgtt ccaaaagaat taaatcttgg gcgatatttt tactttcata ggctaaatga
     3121 tacattttgg tattattttt caaatagcta tctagtggtc ctttatcgtt taaattttgc
     3181 aaaagttcaa atctatactg tggaaatgct tcattacaag gaatgataaa ttcgcctctt
     3241 accccttgtt tttcatctat aaattctgat tctttataaa aacctagttt aaaaaaacat
     3301 tccctttctt tttctaaatt tttacaagcc acgcctatat gatgaagggg taaattgagt
     3361 gttgtattaa gcatttaaaa ctactgccat agtgatagca tttttaaatt tcaatgcttt
     3421 ttccaaacta taatcatttg ccataaaaca ttcataagct ttaaatttta agcctgattt
     3481 ttctatcaaa tctttaactt catcaggatg ggaaaataaa taaatatgat caatagcagg
     3541 agcattgata gggatagttg caaaaatttc ccctccatcg ctaagaagct ctttagatct
     3601 tttaaggaat tcaagaggtt tttctacgtg ttctagcact tctccaatca ctatcaaatc
     3661 agctttttta tcaaaatcat aaataaaaaa atcttgacat aaaaaatcac attttgtaat
     3721 caatccccct acttgttgtt ttaccatttt ttgagtaagt tcgcaacttg ttggagagat
     3781 atcaagtcca taaaaggcgg aaaatttacc acttttaact gctcttgcaa aatattctcc
     3841 atggccaggg cctatttcaa aataagttgt ttttggagta aaatttttta aatattgcga
     3901 aaaatacttt ctcactttaa tatgagctat ccaaacaaaa gaagaaagag ctaggcctat
     3961 catgtattgt ttcatataac tttcattaaa ataaacttta tccttaactt catcaaagct
     4021 agaataacga taagccccat tttctatgaa aaattttgtt tcttctaaag tatcgttaag
     4081 gatcaataaa taacaatcgc attgttcttt tatactgata ccatcttgaa tataataaga
     4141 aattaattta tcaaattctt cttcgtcttc ttgtggaaat tcaatttttt taagatattt
     4201 agaatggata ggattttttt gagcgatggc ttgaaataat ttttcaatat tttctttcat
     4261 ttttctgcct ttagggtttg aattttttct agtaaagtgc tttgagattt taagagactt
     4321 aaatcttctt tgttaaattt gatttcaaat tcttcttcta aactcatgat gatatcaata
     4381 tgagctaaag aagtccagtt cttgcagttt tccatgctta aatttgtatt ttcatctact
     4441 ttggtttcaa gtatattttc taaaatttca taaaattgtt tttccattgt ataccacttt
     4501 cttgagaatg ttgaaaatta atatattgta tcataatttt ctattagaat tgtttggt
//
LOCUS       DAPOLW010000128         4415 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.128, whole genome shotgun sequence.
ACCESSION   DAPOLW010000128 DAPOLW010000000
VERSION     DAPOLW010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4415)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4415)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4415
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.128"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            338..913
                     /locus_tag="ROE18_001527"
     CDS             338..913
                     /locus_tag="ROE18_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HDX3651690.1"
                     /translation="MKKIFISFVVLATCLWAKNTAYTDEVVSLYLNKDDTKVIGRLLP
                     TNPFEVLKSENNRVLLKIDGYVNPKAPSVIYFNDSQRIIVAAFSKNTKLNFSQRITGK
                     NGKWDKVSLEIWADKKEFVKDNKEMLNRAKELFVNNCGICHAIHKEKEFTANAWPAIF
                     RSMADRTGIDKKDRWLVIEYLQKNAKDFKTK"
     gene            924..3440
                     /locus_tag="ROE18_001528"
     CDS             924..3440
                     /locus_tag="ROE18_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HDX3651691.1"
                     /translation="MLDRRKFLKIGASLSALPLIPSLSAGKTVEASKVSLGLVKNGEV
                     ITAAHWGILKLTIKDGKIVKSEPWEKVTKMDNPLQHYTADMVYKSRVKYPYVRKSYLE
                     NPDNPKPELRGKDEFVRVSYDEAIKLIAKELKKTRDSKGASAIFGGSYGWKSSGNMQN
                     SRILLHRFLNVTGGFVGATGDYSTGASQVIMPYVVGSIEVYEQQTSWENILSDSKYVV
                     IWGADPLSTLRIAWTSNEQRGLAYFEKLKNSKIKVICIDPVKTTTAKFLNAKWIAPRP
                     NTDVALMMGMASHLITKKKVNYEFLDTYTTGFDKFKDYLEGKEDGVKKDTKWASKICG
                     IDEKTIKNLAETFYDNPTMIMSGWGMQRAHHGEQPHWMLVTLCAMLGQIGTKGGGFGL
                     SYHYSNGGVPTCKGGVIGGMTAGSLGIWKNGKFKGLSKAEASSEGAEWLQNAASYSFP
                     VARITDALLHPGKTIDHNGAKITYPDIDFIYWVGGNPLVHHQDTNTNVKAWRKPRTVV
                     VNEIYWTPTAKMADIIMPVTSSYERDDITMTGDYSNMHIAPMKQAVEPVGESKDDYVI
                     FSDICKIYGKDVFNAYTENGKKAKDFIKEYYNSALKQTQSFGEAFATPMPSFEEFWAK
                     NEPITFEPTAESLEWTRFSEFIEDPILNALGTDSGLIEIYSETIKNYNYDDCKAHPTW
                     FEPIEWLGNATKEAPFHLLTNHPRDRLHSQLCHTSLRDTYAVKDREPILINSKDAKKL
                     GIKNGDVVRVFNKRGEVLAGAVVSDEIMQGVVRLCEGAWYDPNENGLCKCGNANVLTM
                     DIPTSKLANGNISHTGLVNIEKFKGELPKLTAFSAPKGAN"
     gene            complement(3464..4339)
                     /gene="zupT"
                     /locus_tag="ROE18_001529"
     CDS             complement(3464..4339)
                     /gene="zupT"
                     /locus_tag="ROE18_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HDX3651692.1"
                     /translation="MQFTFEQIFIAMLLTLFAGFSTAIGSIIAFFSRKDDLRVLSLGL
                     GFSAGVMIYISFMEILPTALKDFKNHYDSHWAELLGLACFFGGILISLLIDKLIPEDV
                     NPHEPKEDLSELKICPLPQKGQNPPKFHPGEKLHQINTKALKRTGIFTALAIAIHNFP
                     EGFATFISSLDNLTLGIAIAIAVAIHNIPEGLAVSLPIYHATGDKKKAFIYSALSGLA
                     EPLGAFVGALILLPFIGDLTLAISFAVIAGIMVFISLDELLPAAKTYDKAHDSLYGLI
                     VGMAIMALSLNLLGQ"
BASE COUNT         1654 a          716 c          794 g         1251 t
ORIGIN      
        1 aatcaatctt taaatataaa agcactttgc taaatgagag ttaaaaatgg gaggaaaaat
       61 aaagctataa aaagcttata ccttaaaact caacgagatt aaaatgggct cagaagtatt
      121 aatctgagct caaaacaaac tttttttata attgaagttt tatcttttct aaaaaacaat
      181 aagtaaaata taattaactc aaattcatta tatcaataaa gaataatatt aaagcaccaa
      241 aaataagtaa tcttagtaaa aattatacaa ttaagtaata attaaattgc atagtattaa
      301 aatacattta catcaaattt atattaagga attagtgatg aaaaaaattt tcatttcttt
      361 tgttgtccta gcgacatgtt tatgggcaaa aaataccgcc tatactgatg aagttgtatc
      421 gctttatctt aataaagatg atactaaagt cataggaaga cttttaccta caaatccttt
      481 tgaagtgtta aaaagcgaaa ataacagggt tttgctaaaa attgatggtt atgtaaatcc
      541 taaagcacct tctgtgattt atttcaatga ctctcaaaga attattgttg cagctttttc
      601 taaaaataca aaattaaatt tctctcaaag aataactgga aaaaatggca aatgggataa
      661 ggtaagcctt gaaatttggg cagataaaaa agaatttgtc aaagacaata aagaaatgtt
      721 aaatcgagcc aaagagcttt ttgtaaataa ctgcggaatt tgccacgcta tccacaaaga
      781 aaaagaattt acagctaatg cttggcctgc aattttccgt tctatggctg atagaacagg
      841 tattgataaa aaagacagat ggctagttat agaatactta caaaaaaacg caaaagattt
      901 taaaacaaaa taaggagaaa agcatgctag atagaagaaa atttttaaaa attggagcga
      961 gcttaagtgc tttacctctc attccaagct taagtgcagg aaaaaccgta gaagcttcaa
     1021 aagttagcct cggacttgta aaaaatggag aagtgatcac cgcagcacac tgggggattt
     1081 taaaacttac tataaaagat ggcaaaatag taaaaagtga accttgggaa aaagttacaa
     1141 aaatggataa tcctttacag cactacactg ctgatatggt ttataaatct cgtgtgaaat
     1201 acccttatgt gcgtaaatcc taccttgaaa atcctgacaa tcctaaacct gaacttcgtg
     1261 gtaaagatga gtttgttcgc gtaagttatg atgaagcgat caaacttatc gccaaagaac
     1321 ttaaaaaaac aagagatagc aaaggtgcaa gtgcaatttt tggtggaagt tatggctgga
     1381 aatcaagtgg aaatatgcaa aactcacgca tcttgcttca tagattttta aatgtaacag
     1441 gtggatttgt aggagctaca ggggactatt ctacaggagc ttctcaagtg attatgcctt
     1501 atgttgtagg atcgattgaa gtttatgagc aacaaacctc atgggaaaat atcttaagcg
     1561 attctaaata tgttgtgatt tggggtgctg atccgctttc tactttacgc atagcttgga
     1621 cttcaaacga acaaagaggg ttggcgtatt ttgaaaaact taaaaacagt aaaatcaaag
     1681 tgatttgtat agatcctgta aaaaccacta cagcgaaatt tttaaatgcc aaatggatag
     1741 ctccacgccc aaataccgat gtggctttaa tgatgggtat ggcaagccat ttaatcacta
     1801 agaaaaaagt caattacgag tttttagaca cttacaccac tggctttgat aaatttaaag
     1861 actatttaga aggcaaagaa gatggagtta aaaaagatac caaatgggca agtaaaattt
     1921 gtggtatcga tgaaaaaact atcaaaaatt tagctgaaac tttttatgat aatcctacta
     1981 tgattatgag tggttggggt atgcaaagag cacatcatgg agaacagcct cactggatgc
     2041 tagttactct ttgtgcgatg ttaggacaaa tcggcacaaa aggaggtggt tttggactaa
     2101 gctaccatta tagcaatggc ggtgttccaa cttgcaaagg cggagtgatc ggtggtatga
     2161 cagcaggtag cttaggaatt tggaaaaatg gtaaatttaa aggcttaagc aaagcagaag
     2221 cttcaagcga aggtgcagaa tggcttcaaa atgcagcgag ttattctttc cctgtagcaa
     2281 gaatcactga tgctttactt catcctggaa aaaccataga tcataatggt gctaaaatca
     2341 cttatcctga tattgatttt atctactggg taggtggaaa tcctttagtg catcatcaag
     2401 ataccaacac taatgtaaaa gcatggagaa aaccacgcac cgttgtggta aatgaaattt
     2461 actggactcc aacagctaaa atggcagata ttatcatgcc tgtaacttca tcttacgaaa
     2521 gagatgatat taccatgaca ggagattatt caaatatgca tatagctcct atgaaacaag
     2581 ccgttgagcc tgtgggtgag agcaaagatg attatgtaat tttctctgat atttgcaaaa
     2641 tttatggaaa agatgtcttt aatgcctaca cagaaaatgg caaaaaagct aaagatttca
     2701 tcaaagaata ctacaacagc gccctaaaac aaactcaaag ttttggtgaa gcttttgcta
     2761 ctcctatgcc aagttttgaa gaattttggg ctaaaaatga accaatcact tttgaaccaa
     2821 cagctgaaag tttagaatgg actcgttttt cagaatttat agaagatcct atcttaaatg
     2881 ctctgggtac agattcagga ctcattgaaa tttactcaga aacgattaaa aattataatt
     2941 atgatgattg caaagcccac cctacttggt ttgagcctat tgaatggctt ggaaatgcaa
     3001 ccaaagaagc acctttccac ctacttacaa atcacccaag agatcgcttg cactctcaac
     3061 tttgccacac aagcttaaga gatacttatg cagtaaaaga tagagagccg attttaatca
     3121 attccaaaga tgcaaaaaaa cttggaataa aaaatggcga tgtagtgcgt gtgtttaaca
     3181 aacgcggtga agttttagca ggggcggttg taagtgatga aatcatgcaa ggggttgtaa
     3241 gactttgcga aggtgcttgg tatgatccta atgaaaacgg actttgcaaa tgtggaaatg
     3301 caaatgtttt aactatggat ataccaactt caaaacttgc caatggtaat atctctcaca
     3361 caggactcgt aaatatagaa aaatttaaag gtgaactacc aaaacttact gccttcagcg
     3421 cgccaaaagg tgcgaactaa atttaagaaa gccgcaaggc tttctattgt ccaagcaaat
     3481 ttaaacttaa agccattatt gccattccta ctataagtcc atataaacta tcatgagcct
     3541 tatcataagt ttttgcagcg ggcaaaagct catcaaggga tataaaaacc ataattcctg
     3601 caatcacagc aaaacttata gctaaagtaa gatcgcctat aaaaggcaat aaaatcaaag
     3661 ctccaacaaa agcacccaaa ggctctgcta aacccgaaag agctgaataa ataaaagctt
     3721 ttttcttatc tcctgtagca tggtaaattg gcaaactcac agccaaacct tctgggatat
     3781 tgtgtatagc cacagctata gctatagcaa ttcctaaagt aagattatca agacttgaaa
     3841 taaaagtagc aaaaccttct gggaaattat gtatagcaat agccaaagct gtaaaaatcc
     3901 ctgtacgttt taaagcttta gtattgatct gatgcaactt ttctccagga tgaaatttcg
     3961 gaggattttg tcctttttga ggcaagggac aaatttttaa ctcgcttaaa tcctctttag
     4021 gctcgtgagg attgacatct tcggggatta atttatcaat caataaagat attaaaattc
     4081 caccaaaaaa acaagctaat cccaaaagct cagcccaatg cgaatcatag tgatttttaa
     4141 aatctttaag tgcagtaggt aaaatttcca tgaaagaaat gtatatcatt actccagctg
     4201 aaaaaccaag ccccaaagaa agcactctta aatcatcttt tctggaaaaa aaggctatta
     4261 tagaacctat agccgtagaa aaacctgcaa aaagagtcaa tagcattgcg ataaaaattt
     4321 gttcaaatgt aaattgcatt aatattctta aataaataat attttaaaac tctttatatt
     4381 tataaaaagt taatacttga taaaaatata caaaa
//
LOCUS       DAPOLW010000129         4406 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.129, whole genome shotgun sequence.
ACCESSION   DAPOLW010000129 DAPOLW010000000
VERSION     DAPOLW010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4406
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.129"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            109..678
                     /locus_tag="ROE18_001530"
     CDS             109..678
                     /locus_tag="ROE18_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HDX3651693.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRAKELNPDLEVVIASLNS
                     ELLVKGANSISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLTK"
     gene            complement(708..1073)
                     /locus_tag="ROE18_001531"
     CDS             complement(708..1073)
                     /locus_tag="ROE18_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HDX3651694.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKYFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            1196..2188
                     /gene="pheS"
                     /locus_tag="ROE18_001532"
     CDS             1196..2188
                     /gene="pheS"
                     /locus_tag="ROE18_001532"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HDX3651695.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDE
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            2185..>4406
                     /locus_tag="ROE18_001533"
     CDS             2185..>4406
                     /locus_tag="ROE18_001533"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HDX3651696.1"
                     /translation="MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDK
                     VVVGYVKEKIKHENSDKLSICQVDIGSEILQIVCGAANVDAGQFVTVATKGAIMPNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNG
                     LYNYRAIGLKEEIQTNLLLSLRLAQIEGLGKNSIENLLNYATHSTGVLFNAYDLSSFS
                     EKDEEFTINLSKQVHGETKVSYKDKLLSFSGIFQNNESRCKDDSKIIIIEANYTDPLV
                     IADAKIYHKDQDEKMLYRSFRGSEPKLNLGMDFLLGIFEQIPNLVIYSSSQQILTDKE
                     LPIIPISIEGISDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLS
                     DICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNLRKRAVASGYFESLHYVL
                     DNGEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKIIKLFELG
                     AVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKY
                     NILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPKTYICELDLDLIRQDFKIAKPYS
                     KFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFRLVDIYSDENLKEFYSITISF
                     S"
BASE COUNT         1581 a          500 c          808 g         1517 t
ORIGIN      
        1 tttttgtgtt tttaatgatt gttttggtta taggtttcaa tcatcaaatg atgcaaaaaa
       61 acaaagaaag agaagaaaga tttaaaaaat ataaaaaagg agaacaaaat gagtaaaaaa
      121 gtattaattc cattggctca aggttttgaa gaagctgaat ttataggaat tgcggatgtt
      181 ttaaaacgag caaaagaatt aaatccagat ttggaagttg ttatagcttc gttaaacagt
      241 gagttattgg taaaaggtgc taatagcatt agtataaaag cagattgttc tatagaggat
      301 gttgatatag aaaatttaga tgctattgct ttggcgggtg gctttgaagg tatgatgaat
      361 cttaagaatt caaatgttat tttaaatatc attaaacaac ttcatagcaa aaataaaatt
      421 gttgccgcaa tctgtgcttc tcctatagtt ttaaatgaag caggtgtttt agagggcgag
      481 tttgcttgtt atcctagttg tgaagttgga cttaatggaa atcgtgttaa caaggctgta
      541 gttgtaaata aaaatgttat aacttcagca ggtccagcta cggcaattct ttttggttta
      601 gaactagcta aaaagttatg cggtgatgaa atttatcaaa aattatacga gggaatgttg
      661 ctacctttga caaaatagtt taaatggtag tttttctacc atttaaatta aaataaagct
      721 tgaggatttt cttttttagt tttttcctta ggcagttcaa aacctccaag catatgaaaa
      781 tgcaaatgaa aaacttcttg tccactattt tttccacagt ttgttaccaa gcgatatcca
      841 cttttatcta cacctaaaag aacagctaat tcttgtatga aacttgtcat tttggccata
      901 agttcaggat caaattcttg aaagtcttta aaatattttt tagggattat aagtatatgt
      961 atgggtgctt tgggtgcaat atcatgaaat gctagaaaat cgtcactttc aagcacttta
     1021 ttgcatggaa gtttaccttc aactatgagt tcaaaaattg ttttttcttg cattatttat
     1081 ccttttttat tgttggtttg atacaattat atctttaaag tttggttttt atgctgaatt
     1141 taaaatagtt tttaatagaa ttagaacttg aaatatttta tttaaggtaa gaaaattgca
     1201 aaattttata gaacagattc aaaaatgtga gaatttaaat gatttggaag ccattaggat
     1261 ttccgttctt ggaaaaaaag gtattttaac agaaggcttt acaaagctta aagagttaga
     1321 agatgaggcg aaaaaagaat ttgctgctaa attaaatgca caaaaagaaa tatttaatga
     1381 ggcttattta gccaaattta aagatttgga aaatcttgct ttagaagaaa gaatgaaaca
     1441 agatgcttta aattttaact attttgatga aagtattaca acaggtgcct tgcatcctgt
     1501 tatgagcacc atggataaaa tcatagaata ttttatagct ttgaatttta gcatagaaaa
     1561 agggccttta atagaagatg actttcataa ttttgaagcg ttaaatttac ctaaatctca
     1621 ccccgcaaga gatatgcaag atacctttta ttttgatgat aaaaggcttt taagaacaca
     1681 aacttcgcca gtgcaaatac ggacaatgct tgcacaaaaa cctcctatta ggatgatagc
     1741 ccctggtgct gtatttagaa gagattttga tattacgcat actcctatgt ttcatcaagt
     1801 tgaaggcctt gtggtggaag aagggcaaaa ggttagcttt gcaaatttaa aaagtgtatt
     1861 ggaagatttt ttgcgttata tgtttggaga tgtgaaagtt cgttttcgtc caagtttttt
     1921 cccatttaca gaaccttctg ctgaagttga tatttcttgt gtattttgca aaggaaaggg
     1981 ttgtagagtt tgcaaacata caggttggct tgaagtttta ggatgtggaa tagttgatcc
     2041 taatgtttat aattttgttg gttatgaaaa tgtaagtggt tatgcttttg gattgggagt
     2101 agaacgtttt gcaatgcttt tgcatcaaat tccagattta agatctttat ttgaaggtga
     2161 tttgagatta ttggagcagt ttagatgata attactaaaa gttggttgaa tgattggtta
     2221 gaacttgaag aaataagttc agataaaata gctaaaactt taaactctat aggtatagaa
     2281 gttgataggg ttggcgcttt aaaggctcca gataaagttg ttgtaggcta tgttaaggaa
     2341 aaaattaaac atgaaaattc agataaatta agcatttgtc aagttgatat cggaagtgaa
     2401 atcttgcaaa ttgtctgcgg tgctgcgaat gttgatgcag gacaatttgt aactgttgca
     2461 actaaaggtg ctatcatgcc aaacggtatg gaaataaaag aagcaaaatt gcgaggagtg
     2521 gattcttgtg gtatgctttg ttctagttta gaactgggtt ttgaaaaaat caatgaagga
     2581 attatgcttt tagatgagag tatagggaaa ttagaacttg ggagaccttt aaatacttat
     2641 gaaattttta atgatgagct aatagaagtg gaacttactc ctaatagggg tgattgttta
     2701 agtatttatg gtatagctcg tgatttagcc gcagctttaa atttaaattt aaaagaacca
     2761 aaaccattta aagaaagtga aaatgtttta ggtatcggta gaattttgcg cttagcagct
     2821 gagaaagaac ttaatggact ttataattat cgagccatag ggctaaaaga agaaattcaa
     2881 acaaatttat tgcttagttt aagacttgct caaattgaag gtttgggaaa aaattccata
     2941 gaaaatttat taaattatgc aacgcattca actggtgttc tttttaatgc ttatgattta
     3001 agtagttttt ctgaaaaaga tgaagaattt accattaatt taagcaagca agtgcatgga
     3061 gaaacaaaag tatcttacaa agataaactt ttaagcttta gcggaatttt ccaaaataat
     3121 gaaagtagat gtaaagatga ttctaaaata attattattg aggctaatta taccgatcca
     3181 ttggtaattg cagatgctaa aatatatcat aaagatcaag atgaaaaaat gctttataga
     3241 agttttaggg gaagtgaacc taaattaaat ttaggaatgg attttttgct tggtattttt
     3301 gagcagattc caaatcttgt tatttatagt tcttctcaac aaattttaac tgacaaagaa
     3361 ttaccaatca taccaataag tattgaaggt attagcgata taataggaca aaatgttgat
     3421 aaagatgaag tattaaaaat attaaagaaa ttaggttttg agctcatact ttcaggtgaa
     3481 gggcttataa atgttaaagc acctttacat cgtcctgata ttaaaaattt atcagatatt
     3541 tgcgaggaag ttgtaagaat tataggtatt gataatattg cttccaaggg tttagaattt
     3601 atagaaaaaa atcgtttaaa ttctgcatat aaaaattata ttgagttttt aaatttaaga
     3661 aaaagagcag tagctagtgg ttattttgaa agcttacatt atgttttgga taatggagaa
     3721 gaacttaaaa gattaggttt tgactctgtt aaattaaaac taatcaatcc aattacagca
     3781 gaacttaata ctttaagaac aaccctttta aatcatttgt taaatgcagc aagtttaaat
     3841 gcaaaaaatt ctaaaaaaat tattaaactt tttgaattag gggctgtttt caatgttaat
     3901 aatcaagaat taaatcgtat tgcatttatc cattctggct taaaagaaga agctaaaatt
     3961 tccaacaagg ccaaacctga atcggtgcaa ttttatgatt ttcttttaga tattaaaaat
     4021 attataggtg attttaaact aaaatcatca aaatataata ttttaagccc ttatgaacaa
     4081 gcagatattt atctatcgga tattaaagta ggttttatag gccgtttgca tttaaaaata
     4141 gaaaatgaga gagatttacc aaaaacatat atttgcgaac ttgatttaga tttaatcagg
     4201 caagatttta aaatagctaa gccttactcc aaattcccag ctatcactag agatcttagc
     4261 gtgttaatac ctaaaggttt tgaatacaat cagattaaaa attgtatcga agaattgaat
     4321 ttagaaatac ttgaaaattt tcgtttagtt gatatttata gtgatgaaaa ccttaaagaa
     4381 ttttatagca ttactataag tttttc
//
LOCUS       DAPOLW010000130         4389 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.130, whole genome shotgun sequence.
ACCESSION   DAPOLW010000130 DAPOLW010000000
VERSION     DAPOLW010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4389)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4389)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4389
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.130"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(220..510)
                     /locus_tag="ROE18_001534"
     CDS             complement(220..510)
                     /locus_tag="ROE18_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HDX3651697.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKVVLKEHLAHCMVHAVEENDIQSIEELNKAIDMFMK"
     gene            628..1962
                     /locus_tag="ROE18_001535"
     CDS             628..1962
                     /locus_tag="ROE18_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HDX3651698.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIVEQYYVDDQNISDLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDEATLGINLNDA
                     VDKMRGKSKTQITLTIFRKGATKPFDVTLTREIIKIESVYAKMIENENILYLRVTNFD
                     KNVVDVASKELKKYPNVKGVVLDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRIASE
                     NQEYKADPKNKISNASLVVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            1964..2674
                     /locus_tag="ROE18_001536"
     CDS             1964..2674
                     /locus_tag="ROE18_001536"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HDX3651699.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCKISTEIFHLLEKNGIKTHLVEIISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            2683..2928
                     /gene="purS"
                     /locus_tag="ROE18_001537"
     CDS             2683..2928
                     /gene="purS"
                     /locus_tag="ROE18_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HDX3651700.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSVIEDYELIIEKE"
     gene            2930..3577
                     /gene="purQ"
                     /locus_tag="ROE18_001538"
     CDS             2930..3577
                     /gene="purQ"
                     /locus_tag="ROE18_001538"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HDX3651701.1"
                     /translation="MKVAIIRFPGTNCEFDTTYAFEKLGVKTQIVWHEEKEFDADLVV
                     LPGGFSYGDYLRCAAIAKLAPAMQGVFNHAKKGGYILGICNGFQILLESGLLKGAMKH
                     NNNLSFISKNQSLRVVSNDNAFLKNFKKDEIINLPIAHGEGNYYADETTLKELQDKDL
                     IILKYEPNPNGSVFDIAGICDENKKIFGLMPHPERACEKVLGNDVGLKMLKGFLS"
     gene            3574..>4389
                     /locus_tag="ROE18_001539"
     CDS             3574..>4389
                     /locus_tag="ROE18_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651702.1"
                     /translation="MKILLTLIFSIVVLFGRGEISVFSGQDENMQKELQKLPQEEQKI
                     YQNIPPSDENNDFESNVDDPFVAKGSLVLTNDEYPSRVYVGEVFPITIYARTTENIKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     ADINLNPIKFENTLFNKDFSHLVASSLEIKKVKASYFDDANIIMMVELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKDSKKLENINLKL"
BASE COUNT         1648 a          530 c          755 g         1456 t
ORIGIN      
        1 aagatgtaaa ggtacaactt cattattttt agaatgtata gctaaagatg ctgcactttc
       61 aaggtttgaa agcatattat cagttaaaaa atcttgtata tttgccatgt tttatccttt
      121 atttagttta tagacttgct attatataac tttagtcata taatgtcaag ttaattgagt
      181 aaaatttttt aaataatagg acaaatgact aattttagat tatttcataa acatatctat
      241 agccttgttt aattcttcta tactttgaat atcattttct tctacggcgt gtaccataca
      301 atgagctaaa tgttctttta aaactacttt tgcagtattg ttaacttcgg cttttacggc
      361 agcaagctgg attaaaattt cactacagtc tttgtcattt tcaaccattc ttttaatagc
      421 gcttaaatgt cctatggttc tacttagacg attgcaaact gctttaagat gtttttgaga
      481 atgtgtatga gtatgttttt cttggcacat tgtattaact ttctttttga aatttttagt
      541 ctattttaac atatttttaa gaatttaaat ttatttacga atttttaagc aatttttatt
      601 aaaatttact ctttaaacta aaactcaatg atggagctta ttttgaaaac aaaacgattt
      661 tttgcgggtc ttgcaggctt tgccactact ttcattttat gtctattttt aacaagtcat
      721 ttacaagcta aagttgatca aaaagaagag caggttcaaa aacgcctaga agctttagat
      781 aagcttacaa aaactcttgc catagtagag caatactatg tggatgatca aaatatcagc
      841 gatttggtgg ataaatcttt atcaggactt ttaagcaatc ttgatgcgca ttcttctttt
      901 ttaaatgaaa aagattttaa tgatatgaaa attcaaacca atggcgaatt tggtggcctt
      961 ggtataaccg taggtatgaa agatggtgct ttaacagttg tttctcctat agaaggaaca
     1021 ccagcagata aagcagggat aaaatcagga gatattattt taaaaattaa tgatgaggcc
     1081 actttaggaa ttaatctcaa tgatgctgta gataaaatgc gtggtaagtc aaaaactcaa
     1141 atcactttaa ctatttttag aaaaggtgca acaaaacctt ttgatgttac acttacaaga
     1201 gaaattatta agatagaaag tgtttatgca aaaatgatag aaaatgaaaa cattctttat
     1261 cttagggtta caaattttga taaaaatgtt gtagatgtgg caagtaaaga acttaaaaaa
     1321 tatcctaatg ttaaaggagt tgttttagat cttagaaata atcctggtgg acttttaaat
     1381 caagccatag gacttgtaaa tttatttgta gataaaggtg ttattgtttc tcaaaaagga
     1441 cgcatcgcaa gtgaaaatca agaatataaa gccgatccta aaaacaaaat ttctaatgct
     1501 tctttggttg tgcttgtaaa tggtggaagt gctagtgcaa gtgaaatcgt aagcggagct
     1561 ttacaagatc ttaaacgcgg tgttattgtg ggtgaaaata cttttggaaa aggtagtgtt
     1621 cagcaaatca tacctattaa taaaactgaa gctttaaggc ttactattgc aagatattat
     1681 cttccaagcg ggcgtactat tcaagcagtg ggtgtaaaac ctgatattga agtttttcca
     1741 ggtaaagtaa atactcaaga agatggtttt tctataaaag aaagcgactt aaaacaacat
     1801 ttagaaagtg agcttgaaaa aatagataaa aataaaaaag aagataaaca agaaaataaa
     1861 gacaataaaa atctaatcag tcaaaaacaa atcaatgatg acgcacagtt aaaatcagct
     1921 attgatacta ttaaaatttt aaatatcaaa caaggacaat aaaatgacaa aaaaagaaat
     1981 gctttatgaa ggaaaaggta aaaaactttt caaaactgat gatgaaaatt tactaattag
     2041 tgagtttaaa gatgatttaa ctgcttttaa tgcagaaaaa agaggcaatg aaagtggaaa
     2101 aggtgcatta aactgtaaaa tcagtactga aatttttcat ttgcttgaaa aaaatgggat
     2161 taaaacccat ttggtagaaa ttataagcga tacagaacaa gtggttaaaa aatgtaaaat
     2221 tgttcctatt gaagttatag tacgcaatgt tgcaacaggt tctcttacaa aaagactggg
     2281 cattaaagat ggcactgtgc taccttttgc tttggtggaa ttttgtctta aagatgatgc
     2341 cttaggcgat ccttttatca atgatgagca ttgtttgatt ttaaatttag tgcaaaatga
     2401 agctcaaatt agtgaaatta aaaatatggc taggaaaatc aactctattt taactccatt
     2461 ttttgacaat aagaatttaa ggttgattga ctttaaaatc gaactgggtt taactaaaga
     2521 taatgagctt gttttagctg atgaaataag ccctgatagt tgtagattct gggataaatt
     2581 tagtaatgaa aaattagata aagatagatt tcgtcaagat ctaggtaatg taaaaatggc
     2641 ttatgaagaa gttttaaaaa gaatattaaa ttaaggaaaa atatggaagt tattgtaaat
     2701 atttctttaa aaaatggggt tttagatcca caaggcaaag cggtggaaaa agctttgcat
     2761 tctttaaatt ttaatagtgt taaagaagta aaaatagcaa aacaaatcaa aatttctctt
     2821 gatgagaaag atgaaaaatt agccaaagaa caagtaaaaa aaatgtgtga agagttgttg
     2881 gtaaatagcg tcattgaaga ttatgagctt ataattgaga aagaataaaa tgaaagttgc
     2941 tattattaga tttccaggga caaattgtga atttgataca acttatgcct ttgaaaaact
     3001 tggagtaaag acgcagattg tttggcatga agaaaaagaa tttgatgcag atttagttgt
     3061 tttaccagga ggattttctt atggagatta tctaagatgc gcagctattg caaaacttgc
     3121 tcctgctatg caaggtgttt ttaatcatgc aaaaaaagga ggatatatct taggtatttg
     3181 taatggtttt caaattttac ttgaaagcgg tcttttaaaa ggtgcaatga agcataacaa
     3241 caatcttagc tttatctcaa aaaaccaaag tttaagagtg gtttctaatg ataatgcctt
     3301 tttgaaaaat ttcaaaaaag atgaaattat taatttacca attgcccatg gagagggaaa
     3361 ttattacgct gatgagacta ctttaaaaga attgcaagat aaagatctta ttattctaaa
     3421 atacgagcca aatccaaatg gttctgtatt tgatatcgca ggaatttgtg atgaaaacaa
     3481 aaaaatcttt ggactcatgc cccatcctga gcgtgcttgt gaaaaagttc taggtaatga
     3541 tgtaggttta aaaatgctta aaggcttttt atcttgaaaa ttttattaac tttaattttt
     3601 agcattgttg tattgtttgg caggggtgaa atttctgtat ttagcggcca agatgaaaat
     3661 atgcaaaaag aattacaaaa attaccccaa gaagaacaaa aaatttatca aaatattccg
     3721 ccaagtgatg aaaacaatga ctttgaaagc aatgtagatg atccttttgt agccaaaggg
     3781 agtttggttc ttacaaatga tgaatatcca agtagagtat atgttggaga agtttttcct
     3841 attacgatct atgctcgcac tacggaaaat ataaaatttg attttaacat aagcgtagaa
     3901 aaaactaact tatctttttt gaatccagat gcaaaatggg aatttatcaa caatgaatat
     3961 aaaacaactt tatggtttga agccaaaaat tcaaatgcta gtttgagtaa aatttctatc
     4021 aaacttctta gaaataatga agcttttcaa gaggctgata tcaatcttaa tcctatcaaa
     4081 tttgaaaata ctttattcaa taaagatttt tcacaccttg tggcaagttc tttggaaatt
     4141 aaaaaagtta aagcgagtta ttttgatgat gctaatatca ttatgatggt agaactaaac
     4201 gcaaccaata caaatcttaa aagctttttt atagaaggaa ttcaaaagca aggtattgaa
     4261 aatttaaaag gggattttaa tgcttctagt gctttttatt atgctatttt gccattaagt
     4321 aaaacaaatt ttgaattttc gtatttcaat aaggacagta aaaagcttga aaatataaat
     4381 ttaaaatta
//
LOCUS       DAPOLW010000131         4264 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.131, whole genome shotgun sequence.
ACCESSION   DAPOLW010000131 DAPOLW010000000
VERSION     DAPOLW010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4264)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4264)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4264
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.131"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..355
                     /locus_tag="ROE18_001540"
     CDS             <1..355
                     /locus_tag="ROE18_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HDX3651703.1"
                     /translation="YEKVIPKTFKQELSFSTEDFIDSLKKISVVTEKMKLHFNKDKII
                     FEGISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNEPNSAFI
                     VKSQGLSMIIMPMIL"
     gene            384..2693
                     /gene="gyrB"
                     /locus_tag="ROE18_001541"
     CDS             384..2693
                     /gene="gyrB"
                     /locus_tag="ROE18_001541"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HDX3651704.1"
                     /translation="MQENYGASNIKILKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEG
                     GISQFVTDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEANYIFDKIKDRGLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(2719..3060)
                     /locus_tag="ROE18_001542"
     CDS             complement(2719..3060)
                     /locus_tag="ROE18_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HDX3651705.1"
                     /translation="MKKIILILVLFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASRKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAILLQNKTH"
     gene            complement(3063..>4264)
                     /locus_tag="ROE18_001543"
     CDS             complement(3063..>4264)
                     /locus_tag="ROE18_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HDX3651706.1"
                     /translation="LKNIGFGLLGISVLSNFSFENFLGSKALAKELPDFKIEGKKDLI
                     YHGEKPLTAETEIYALDSDFTKPENFFVRNNGLLPSLETIKERLHKGWTLEIDGESII
                     NKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYGAVACGRWTGVRLK
                     DILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDETLIAWAYEGKDIP
                     LVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVPVNPVKPGDFNYKG
                     EMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEVYISNDYGVTWTKA
                     KVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLAQWNPGGYINNACH
                     RVNVYGV"
BASE COUNT         1496 a          655 c          712 g         1401 t
ORIGIN      
        1 ttatgaaaaa gttataccaa aaactttcaa acaagaactc agtttttcaa ctgaagattt
       61 tatagatagt cttaaaaaaa tcagcgttgt aactgaaaaa atgaaacttc attttaacaa
      121 agataaaatc atctttgaag gtataagttt agacaatatg gaagcaaaaa cagaacttga
      181 aattcaaaca ggagtgagtg aagaatttaa tcttactata aaaatcaaat atttacttga
      241 tttcttaact tctatagaag aagaaaaatt cactttaagt gtaaatgaac ctaattcagc
      301 atttatagtc aaatcccaag gactatcaat gattatcatg cctatgattt tgtaataaaa
      361 caagtaaaag ataaaggaaa aatatgcaag aaaattacgg tgcgagtaat attaaaatcc
      421 taaaaggcct agaagctgtt agaaaacgcc caggtatgta tataggagat acaaacatag
      481 gcggacttca tcatatgatt tatgaagttg tggataattc tatcgatgaa gctatggcag
      541 gacattgtga tactatagat gtagaaatca ctactgaagg aagctgtata gttagtgata
      601 atggtcgtgg tattcctgtt gatatgcacc caactgaaaa tatgccaact ttaactgttg
      661 ttttaactgt cctacatgca gggggaaaat tcgataaaga tacttataaa gtttcaggcg
      721 gtttgcacgg tgttggggtt tcagttgtaa atgcactctc taaaaaactt gtagctacag
      781 ttgaaagaaa tggagaaatt tatcgtcaag aattttcaga aggtaaagtt atcagtgaat
      841 ttggtgtgat aggaaaaagt aaaaaaacag gaacaactat agaattttgg cctgatgatc
      901 aaatttttga agtgactgaa tttgattatg aaattttggc taaaagattt cgtgaacttg
      961 catacttaaa tccaaaaatc actataaatt ttaaagataa ccgcgtaggc aaacatgaaa
     1021 gttttcactt tgaaggtgga atttctcagt ttgttacaga cttaaataaa aaagaagctt
     1081 taactaaagc aattttcttt agtgtagatg aagaagatgt gaatgttgaa gtagctttgc
     1141 tttacaatga tacttatagt gaaaatttac tctcttttgt aaataatatc aaaaccccag
     1201 atggtggaac acacgaagct ggttttagaa tgggtttaac tcgtgtgata agtaattata
     1261 tagaagcaaa tgcaagtgct agagaaaagg ataataaaat cacgggtgat gatgtgcgtg
     1321 aaggtttgat cgctattgtg agtgtaaagg tacctgaacc acaatttgaa ggacaaacca
     1381 aaggaaaact tggttcaact tatgtgcgtc ctatagtttc aaaagcaagt tttgaatatt
     1441 tgactaaata ttttgaagaa aatcctatcg aagctaaagc tataatgaac aaagccttaa
     1501 tggcagctag aggaagagaa gcagcaaaaa aagctagaga attaacgcgt aaaaaagaaa
     1561 gtttaagcgt aggaacttta ccagggaaat tggctgattg tcaaagtaaa gatccaagtg
     1621 aaagtgaaat ttatcttgtg gaaggggatt ctgcaggagg ttctgcaaaa caaggtagag
     1681 aaagatcttt ccaagctata ctgcctttgc gtggtaaaat tttaaatgtt gaaaaagcaa
     1741 gactggataa aattttaaaa tctgagcaaa ttcaaaatat gattaccgct tttggctgtg
     1801 gtataggtga agattttgat ctttcaaaac ttagatatca taaaatcatc atcatgacag
     1861 atgcggatgt tgatggatca catatacaaa ccttgctttt aactttcttc ttccgtttta
     1921 tgaatgaact tgtagcaaat ggacatattt atctagcaca accaccttta tatctttata
     1981 aaaaagctaa aaagcaaatt tatttaaagg atgaaaaagc tttgagcgaa tacctgatag
     2041 aaacaggaat agaaggttta aactatgaag gtataggaat gaatgattta aaagattatt
     2101 taaaaatcgt tgcagcttat cgtgcgattt taaaagatct tgaaaaacgt tttaatgtga
     2161 tttctgtgat acgctatatg atagaaaatt caaatttagt taaaggaaat aatgaagaat
     2221 tatttagtgt aatcaaacaa tttttagaaa cacaaggaca caatatctta aatcattata
     2281 tcaacgaaaa tgaaattcga gctttcgttc aaactcaaaa tggcttagaa gaacttgtga
     2341 tcaatgaaga acttttcact catccactat atgaagaagc aaattatatt tttgataaga
     2401 ttaaagatag aggcttggaa tttgataaag atattttaga agttcttgaa gatgttgaaa
     2461 ccaatgctaa aaaaggtgct actatacaac gctataaagg tttaggggaa atgaatcctg
     2521 agcaactttg ggaaaccaca atggatccaa gtgtaagaag acttttaaaa atcactattg
     2581 aagatgcaca aagtgcaaat gataccttta atctctttat gggtgatgag gttgaaccaa
     2641 gacgcgatta tatccaagca cacgctaaag atgtaaagca tttggatgtg taaatttatc
     2701 attgaagaaa tcatttcttc aatgagtttt gttttgtaag agtatagcta gaggaattct
     2761 tcttcttgta tcgtattttt ctccataata tttttcaaga taatttaaaa ttttttcttc
     2821 atcttcaggt tctatttccc aaagtccttc actatcttgc atccatctta tagctgctaa
     2881 ccaagctttt ctacttgcat gcatattagt aatgagattg gatccatgac aagctaaaca
     2941 atttgcttcc actaaaggtg aatcaggatc gataatcaat cctgtatcag ggttaatttc
     3001 aagattttga gcccaacttg cacttaaaaa caatactaag atcaatataa tttttttcat
     3061 acttaaactc cataaacatt aactctatgg catgcattat tgatatatcc tcctggattc
     3121 cactgtgcta aaaccatagg ttgactgtta ccttgactat cgatagctct tgcccaaatt
     3181 tcataatatc cttttgttgg tattgatatt tgagcactcc atttttgcca tgctaatcta
     3241 tttaatggtt tttctacctt tgctttagtc catgttacgc cataatcatt gcttatataa
     3301 acttcactaa cttcaagttc tccagcccaa gctttacctc taacttcaaa ttttttattt
     3361 gcttttattt cagaaccatt tttgatatta gtaattacag atcttatagg cattgattct
     3421 atgattttca tctcgccttt atagttaaaa tctcctggtt ttaccggatt tacaggaact
     3481 ttataagaac cttccatttt ttcaccatca tgaattttat ttcttactga aattttataa
     3541 agccatttac cgcttgtact tgcagggtaa ccaccacaaa caagtctaag tggatagcca
     3601 ttgactaaag gaatatcttt gccttcataa gcccaagcta ttagagtttc atcttgtaaa
     3661 gctttagaaa taggaactcc tctactaata ggtgaagttt cttcaccatt taattttgta
     3721 tctatgccat aatatccgat ataaaccgca tcatttttga tgccacaatc ttttaaaata
     3781 tcttttaaac gcactcctgt ccatctaccg caagctactg caccataacc ccattgagtt
     3841 ccttttgtgc taggtataac ttcggatcta ccatttccac cgcattcaac tgttaaggca
     3901 taagtatagg ttttaaattt cttttttaaa tcttctatgg tgtaagattt tttattgata
     3961 atgctttctc catcgatttc taaagtccaa cctttgtgaa gtctttcttt tatcgtttct
     4021 aggcttggta gtaagccatt atttctaaca aagaaatttt caggtttggt aaaatcagaa
     4081 tcaagagcat aaatttcagt ttctgctgtt aatggttttt cgccatggta gataagatct
     4141 tttttacctt ctattttaaa atcaggcaat tcttttgcca aagccttact tcctaaaaaa
     4201 ttctcaaaag aaaaatttga caatacactg atgccaagca aaccaaatcc tatatttttt
     4261 aaga
//
LOCUS       DAPOLW010000132         4247 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.132, whole genome shotgun sequence.
ACCESSION   DAPOLW010000132 DAPOLW010000000
VERSION     DAPOLW010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4247)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4247)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4247
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.132"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            74..358
                     /gene="gatC"
                     /locus_tag="ROE18_001544"
     CDS             74..358
                     /gene="gatC"
                     /locus_tag="ROE18_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HDX3651707.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIAQLSEIVNFVEKLNELD
                     LDSQEITVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            426..989
                     /locus_tag="ROE18_001545"
     CDS             426..989
                     /locus_tag="ROE18_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HDX3651708.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSTFYKIENQSLAGFAGFLAILIIFWIACLLAGNFLSKLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHASEKLQDIVSDLNNTQKGE"
     gene            991..1464
                     /locus_tag="ROE18_001546"
     CDS             991..1464
                     /locus_tag="ROE18_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HDX3651709.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCGDCNNQKAKVKI"
     gene            1465..2970
                     /gene="lysS"
                     /locus_tag="ROE18_001547"
     CDS             1465..2970
                     /gene="lysS"
                     /locus_tag="ROE18_001547"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HDX3651710.1"
                     /translation="MFDNILEQQRIEKAKELKNLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFSKDSVGEELYTIL
                     KKNLEVGDIVLVKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNVEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLIVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMINFSKPFERITYKDALCKYGGLDRDLI
                     EDKEKILTKLKADGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            2967..4211
                     /locus_tag="ROE18_001548"
     CDS             2967..4211
                     /locus_tag="ROE18_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HDX3651711.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDVNNEKLQ
                     ENIKQELKKLASNFIIYERAMF"
BASE COUNT         1503 a          478 c          835 g         1431 t
ORIGIN      
        1 aatatcctaa acaatttaaa gctttttatg atataatttt caaaatttta acttttttat
       61 taaggtttaa gaaatgcaaa tagatgagaa attattaagc aagcttgaaa aattaagtgc
      121 tttacaaata acaaaaaaca gaaatgaaac cattgcacag ttaagtgaaa ttgtgaattt
      181 tgttgaaaaa ttaaacgaac ttgatctaga ttcccaagag attactgtga gtactataaa
      241 aggtggagct cctttgagga ttgatgagat aagaaatagc aatgttattg atgaggtttt
      301 ggattgtgct ccaaaaaaac aagaacattt ttttgttgtt cctaaaatca tagaatgatt
      361 aacttagcat ttagtgctta tttgtagaat aaatttaaaa caaaaaaaat cagagagtga
      421 ttgaaatgaa tttttattgg tttgatgctt ttattttagg atttaccttg cttttagggc
      481 ttaagggtat tatcaatggt ttgataaaag aaatttttgg gcttttgggt attattggtg
      541 gtgtttttat tgcttcaaaa tatgcaactc aagcagctga atttatacaa agtacttttt
      601 ataagataga aaatcaaagc ttagctggat ttgctggatt tttggccata ttaattattt
      661 tttggatagc ttgtttgttg gcaggtaatt ttctttctaa gttgattaaa ttaagtggcc
      721 taggtttttt agatcgtatt ggtggcttta tatttggcgg ggcaaaaatc tttttaattt
      781 ttgcaatttt agttttttgt gtagcaagaa tcgatttttt aaatgataaa ttagataatt
      841 ttgctaaaaa tagctatact ttgaatttgc ttaaagaaac tggatctttt attatgaatc
      901 aacctttaac agaaaatagt ctagatcatg ctagtgaaaa gttgcaagat attgtaagtg
      961 atttaaacaa tactcaaaaa ggggagtgat atgctgatag aaaatgtgga atatgatgtt
     1021 ttacttgaga gatttaaaaa aatattaaga caaggcggac ttaaatatac taagcaaaga
     1081 gaagtgcttt taaaaactct ttatcacagt gatactcatt acacacccga aagtttatat
     1141 atggaaatca aacaagctga acctgattta aatgtaggaa ttgcaactgt ttatcgtact
     1201 ttaaatttgc ttgaagaagc agaaatggta acttccattt cttttggttc agcaggtaaa
     1261 aaatacgagc ttgccaataa acctcaccat gatcatatga tatgtaaaaa ttgcggaaaa
     1321 attatagaat ttgaaaatcc tattatagaa agacagcaag ccttgattgc aaaagaacat
     1381 ggttttaaac ttacagggca tttgatgcag ctttatggtg tttgtggtga ttgtaataat
     1441 caaaaagcaa aggtaaaaat ataaatgttt gataatattt tagagcagca aagaatagaa
     1501 aaagctaagg aattaaaaaa tttagggatc aatccttatc ctcatttttt agaaaaagaa
     1561 atgtctttaa agacttttaa ggataaattt tcttatattt tagagcaagt tgaaaaaaga
     1621 gatgaaagtg tcaatgctgt tgttgcagga cgtttgaaac ttttgcgtat agctgggaaa
     1681 tcgatttttg caaacattga agatgaggat acaaatttac aaatttattt tagtaaagat
     1741 agcgtaggcg aagagcttta tacgatttta aaaaagaatt tagaggtggg tgatattgtt
     1801 ttggttaaag gttttccttt tgtaactaaa acaggtgagt ttagtttaca tgcaagtgaa
     1861 gtaaaactcg ctacaaaagc tattgttcct ttacctgaaa aatatcatgg attaacagat
     1921 attgagcaaa gatatcgtaa acgttatgtt gatatgataa tgaatgtcga agttagaaaa
     1981 gattttttag tgcgttctaa agtggtgagt ttaatccgtc atttttttga aaataaaggc
     2041 tttttagaag tagaaactcc tatgatgcat ccgattgcag gtggagcaaa cgctaagcct
     2101 tttgtaactt ttcataattc tttaggcgta gaaagatttt taagaattgc tccagaactt
     2161 tatcttaaaa gacttatagt aggtggtttt gaggcggttt ttgaaatcaa tcgttgtttt
     2221 agaaacgaag gtatggattt aactcataat cccgaattta caactataga attttattgg
     2281 gcctatcata attataaaga tttaatggat ttaaccgaag aactttttgc tttacttttg
     2341 gataaactta atttaggaaa aacaatagaa tttgatggaa aaatgataaa tttttctaaa
     2401 ccttttgaaa gaataaccta taaagacgca ctttgtaagt atggtggttt agatagggat
     2461 ttaatcgaag ataaggaaaa aattcttact aaattaaaag cagatggttt tgaagcgaat
     2521 gaaaagcttg aacttggaca tttgcaagct gaactttttg acaattatgt ggaagaaaaa
     2581 ttgatcaatc ctacttttgt gattgatttt cctatttcca taagtccttt atcaagacgt
     2641 agcgatgagg attctcagat tgctgagaga tttgagttgt ttatttgcgg aagagaattg
     2701 gcaaatggtt ttaatgagct taatgatcct cttgatcaat atgagagatt tttaaaacaa
     2761 attgaagcta aaaatgcagg cgatgaagag gcttgtgaaa tggatgaaga ttttgtaaat
     2821 gctttgggtt atggaatgcc tccaacggca gggcagggca taggtataga tagacttgtt
     2881 atgcttttga caaataaaaa atccattcgt gatgtgatat tgtttcctgc aatgcgtcca
     2941 ttaaaatcag aactaaagga gaaagaatga gtttagaaat gtttgataaa gaaatttttg
     3001 atttaacaaa caaagagtta gagcgtcaat gtgaaggtct tgaaatgata gcgagtgaaa
     3061 atttcacttt acctgaagta atggaagtta tgggaagtat cttgacaaac aaatacgcag
     3121 aaggttatcc gggtaaaaga tattatggtg gttgtgaatt tgttgatgag attgaaactc
     3181 tagctattga aagatgtaaa aaacttttta attgtaaatt tgctaatgtt cagcctaatt
     3241 caggttctca agctaatcaa ggtgtttatg cggctttgat taatccaggt gataaaattt
     3301 taggaatgga tttaagtcat ggcggacatt taactcatgg tgcaaaagta agttcttcgg
     3361 gcaaaatgta tgaaagctgt ttttacggcg tagaacttga tggaagaatt gattatgaaa
     3421 aagtaagaga aattgctaaa aaagaaaaac caaaacttat agtttgtgga gctagtgctt
     3481 atgcaagagt gattgatttt gctaaattta gagaaattgc tgatgaaata ggtgcctatc
     3541 tttttgctga tatagcacat attgcaggtc ttgttgtggc aggtgagcat ccaagtcctt
     3601 ttccatacgc tcatgtagta agctcaacta cacataaaac tttgcgtggc ccaagaggtg
     3661 gtattattat gacaaatgat gaagagcttg ctaaaaaaat taattctgcc atttttccag
     3721 gtattcaagg tggtcctttg atgcatgtaa ttgctgcaaa agcagtagga tttaaattta
     3781 atcttagcga tgagtggaaa gtttatgcaa aacaagtaag aactaatgct caagttttag
     3841 ctaatgtttt aatggataga aaatttaaac ttgttagcga tggaacggat aatcaccttg
     3901 ttttaatgag ttttttagat cgtgaattta gtggaaaaga tgcagattta gctcttggaa
     3961 atgcaggtat tactgcaaat aaaaataccg ttccaggaga gattagaagt ccttttatca
     4021 caagtggatt aagacttgga actccagccc ttactgccag aggttttaaa gaaaaagaaa
     4081 tggaaattgt gtcaaattat attgcagata ttttagatga tgttaataat gaaaaattac
     4141 aagagaatat taaacaagaa ttaaaaaaac ttgcaagtaa ttttattatt tatgaaaggg
     4201 ctatgttttg atttcaccaa tggatatgtc gctaattaaa ataattg
//
LOCUS       DAPOLW010000133         4181 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.133, whole genome shotgun sequence.
ACCESSION   DAPOLW010000133 DAPOLW010000000
VERSION     DAPOLW010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4181)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4181)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4181
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.133"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(22..405)
                     /locus_tag="ROE18_001549"
     CDS             complement(22..405)
                     /locus_tag="ROE18_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651712.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQIEDYSSSGDSDFMDMLNK
                     ADEKSSGDALNSSSSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLTQQGANEQSKNNTLLNDLLNAI"
     gene            complement(480..815)
                     /locus_tag="ROE18_001550"
     CDS             complement(480..815)
                     /locus_tag="ROE18_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651713.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            complement(805..2382)
                     /locus_tag="ROE18_001551"
     CDS             complement(805..2382)
                     /locus_tag="ROE18_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HDX3651714.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLFLGADALFLDEPTNNLDLEAISWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEIKGIGKAYDKQLFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIAHAISPDSGSIHLGATIELGYFPQDTSNL
                     ICENLKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGK
                     LTDFRGTYQEFLGENDG"
     gene            complement(2512..2928)
                     /locus_tag="ROE18_001552"
     CDS             complement(2512..2928)
                     /locus_tag="ROE18_001552"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651715.1"
                     /translation="MFKKVILFFLMGFALLQANSLDKCDNTAVVSNLKEKIPSEIFKN
                     LYELSGLKAQGIDYEDYAKGLKEIAKHDGMVNYTDMIEINSISNFDLNFDSCMATINA
                     ALKGEQRKGLWSVVYKVSNINQVKITDITYINGDFQ"
     gene            complement(2941..3573)
                     /locus_tag="ROE18_001553"
     CDS             complement(2941..3573)
                     /locus_tag="ROE18_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system YwqK family antitoxin"
                     /protein_id="HDX3651716.1"
                     /translation="MTKFLSICSLIAMLLSGCGSDFPGQPSDVARVQQNKYPNGNLKE
                     EIPYNKDSRIHGLKRAFYDNGQLRAEENYKNGKKDGISREYSRNGQLLEEVHFKDNRG
                     YGDFASYYENGNMRAKGKLLGYNEDGMPEFEGNYKEYYENGTLMCDYNFDNKGKFDGV
                     QKRYDENGALEDEENYKNGLKNGVFREYKKGEIVREEEYKNGILVAKPKN"
     gene            complement(3582..3809)
                     /locus_tag="ROE18_001554"
     CDS             complement(3582..3809)
                     /locus_tag="ROE18_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superinfection immunity protein"
                     /protein_id="HDX3651717.1"
                     /translation="MEGASGGSIFVTILLFILYMLPAIIGLSRKHSNWLIISLLNLFF
                     GWTIIVWLVCLIWSFTGSFKQTIIIKEKNEK"
     gene            3978..>4181
                     /locus_tag="ROE18_001555"
     CDS             3978..>4181
                     /locus_tag="ROE18_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDX3651718.1"
                     /translation="MTKKSKRDMAYELDIDVSTLYNWRKYKPNLYRIVMLGFKFDELL
                     DNSKKTHEELLHIEQTIQDEIAKF"
BASE COUNT         1384 a          812 c          484 g         1501 t
ORIGIN      
        1 gctccaaaat ggagcttttg attaaattgc gttcaataaa tcatttaaca aagtattatt
       61 cttactttgt tcatttgcac cttgttgtgt aagatcatta tgaacgctag cactttgagc
      121 tctcatagac agctcgcctt cattttgtct aaaacgataa gcgtaaacat ttgacatttg
      181 agcataatta cttaaatttg aatttgagtt ttgcgcattg ctttgaaaac tactgctaga
      241 atttaaagca tctccgcttg acttctcatc cgccttattt aacatatcca taaaatcaga
      301 atctccagat gaagaataat cttcaatctg tttatccacc tgtttatact gaccactaat
      361 agcatcgtat tcatacgagc taatcgttct ataatttacc tgcatagttt tctcctttca
      421 aaatatgcaa aaactataca agcaaaaagc gttccttttt atgtaaaaat taatgttttt
      481 taatcatggt gagtaggcaa atgctccaca tcaagctcat tgttggctat aaattcctcc
      541 ttggcttttt tacagttttc atcacgcatt ttgcggtatt cattgcgaat ggtgatttct
      601 ttatcgctta gaggtctatc ttctaaaaaa ctgatatgaa aataagtatc atcgctcttt
      661 gaataagttt tataaaaatc tatatagtca aaataatcct tgccattatc aaactctacg
      721 acctcttcta tataaatcgt aggtccaaaa cccttgtgat tttgcgtata gtgcccaaaa
      781 cctgcgctgt attgaattct aaatttagcc atcattttct cctaaaaatt cttgataagt
      841 tccacgaaaa tccgtaagct taccattttc taaatgccaa attctattag caaaagcaga
      901 aactaactcc ctatcgtggc tgatacaaag cactacacct ttgaaattat acaaagcttc
      961 acctagtgca ataatacttt caagatctaa atggttatca ggctcatcta aaagcaagaa
     1021 atttggacgc tctagcatta aacgagaaag cattaaacgg tgtttttcac ccccacttaa
     1081 acttgctgcc atcttttctt gatcactgcc actaaaaagc attctaccta aacacttacg
     1141 gatttcatct agatctttaa atttttcact catcaaccat tcataaagtt tcaaattttc
     1201 acaaattaaa ttacttgtat cttgaggaaa atatccaagc tctatagttg ccccaagatg
     1261 tatggatcca ctatctggac ttatagcatg ggcgatgatt tttgccaaag tacttttgcc
     1321 cacaccattt gccccaatca aagcgatttt atcatttttt tctattttta gctccaaatt
     1381 tgaaaacaat tgtttatcat aagccttgcc tataccttta atttctaaaa cttcattacc
     1441 tatttcacga ttagttctaa atactatact aggatctcta cggcttgaaa ttttaatctc
     1501 ttcaagctct agtttttcaa gcgccttagc acggcttgtg gcttgttttg ctttagaagc
     1561 atttgcacta aaacggcgaa tgaaattttc taattcttct ctttctttta aggttttatc
     1621 gcgtttaagc tcagcttgtt ttgccaaaag cgttgaagcc atataccaat catcataatt
     1681 tcccgcaaaa tcacgaattt gtttaaaatc cacatccaaa atccttgtgc aaattttatt
     1741 taaaaaatgc ctatcatgag agatgacaac caaagttcct tcatgtctta aaagttcatt
     1801 ttcaagccaa gaaatcgcct ctaaatcaag gttatttgta ggctcatcta aaaaaagcgc
     1861 atcggcacct aaaaacaaaa cttgagctaa caaaacttta aatttatccg cactttgtaa
     1921 ggtgctcatt aaagcatcga aatctttaat ctttaaagaa cttaaaattt tttcacaacg
     1981 tgtttcacaa tcataatttg gatcttcttc agccgttatt atctcaagct cacctaaacg
     2041 ctcattgatc tcatcagtaa attcctcgct catataaagc ttttcttttt cttttaaggc
     2101 ctcatataaa cgcttatttg cacacatcac tgcatctttg atggtgtagt tttcaaaagc
     2161 aaattgatcc tgtcctaaaa ctgcgatttt caagccttca tcaaatacta tttcaccact
     2221 acttgactca atttctcctg aaagaatttt caaaaaagtc gattttcccg caccattagc
     2281 accgataagt ccgtatcttt gtcctcgaac aagttttaaa ttaacatttt caaataaaag
     2341 ctgatttgca aaacgcatag taagattttt tacttcaacc atgattttcc ttaaattttt
     2401 tacttataaa aatttttaag aaattgtatc aaaaaaagac ttgaaattaa ttgagtataa
     2461 aatattagta agtcatgaaa ttaattctat tgacttactt taataaaaat attattggaa
     2521 atctccattg atataagtta tatctgtaat tttcacttga tttatgttag aaaccttata
     2581 aacaacactc caaagacctt ttctctgttc cccttttaat gcagcattaa tcgtagccat
     2641 acaagaatca aaattaagat caaaatttga aatggaatta atttcgatca tatcagtgta
     2701 atttaccatt ccatcatgct tggctatttc cttgaggcct tttgcataat cttcataatc
     2761 aatcccttgg gctttaagtc cggataattc ataaagattt ttaaaaattt cactaggaat
     2821 tttttcttta agatttgaaa caactgccgt attatcacat ttgtctaatg agttggcctg
     2881 aagcaaggca aaccccatta agaaaaataa aattactttt ttaaacatat ctaaactcct
     2941 ctaattttta ggttttgcta ctaaaatacc atttttatat tcttcttctc ttacaatctc
     3001 ccctttttta tattctctaa agactccatt tttaagtcca tttttataat tttcttcgtc
     3061 ttctaaggcg ccattttcat cataacgctt ttgtactcca tcaaatttac ctttattatc
     3121 aaaattataa tcacacatta aagttccatt ttcataatat tccttgtaat taccttcaaa
     3181 ttctggcata ccatcttcat tatagccaag taattttccc tttgctctca tatttccatt
     3241 ctcataatag cttgcaaaat caccatatcc gcgattatct ttaaaatgca cctcctcaag
     3301 taattgccca tttctagaat attccctgct aattccatct ttttttccat ttttataatt
     3361 ttcttcagct cttagctgac cattgtcata aaaagctctt tttaacccat gtattcttga
     3421 atctttatta tagggaattt cttcttttaa atttccattt ggatatttgt tttgctgaac
     3481 tctagccaca tcactaggtt gtccaggaaa atcacttcca caaccactta acaacatcgc
     3541 aattaaacta caaatgctta aaaattttgt cattttttct cctatttctc atttttttct
     3601 ttaataataa tagtttgctt aaaacttccc gtaaaagacc atattaaaca aacaagccaa
     3661 acaataatag tccaaccaaa aaacaaattt agcaaagaaa ttatcagcca attagaatgc
     3721 tttctgctca aaccaataat agcgggcaac atgtataata taaacaataa tattgttaca
     3781 aaaatagacc cgccacttgc accttccatg taattctcct taaataaaaa ttttataaaa
     3841 actattattc catactataa cttaattaat attgaaatat taaatatatt ttatataaaa
     3901 gattgaatat ttcaagtgtt tttaataaag aaattttaat gtaaaatttt ttaaaggcta
     3961 aatttttaag gtaaaaaatg acaaaaaaga gcaagcgtga tatggcatat gaactagaca
     4021 ttgatgttag cactttatat aattggagaa aatataaacc caatttatat cgtattgtta
     4081 tgcttggctt taaatttgat gaacttttag ataatagcaa aaaaactcat gaagaattac
     4141 tccatataga acaaaccata caagatgaaa ttgctaaatt t
//
LOCUS       DAPOLW010000134         4117 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.134, whole genome shotgun sequence.
ACCESSION   DAPOLW010000134 DAPOLW010000000
VERSION     DAPOLW010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4117
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.134"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..189
                     /locus_tag="ROE18_001556"
     CDS             <1..189
                     /locus_tag="ROE18_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651719.1"
                     /translation="INLNDNEKNINSNEILTIDEYVKYVIINYQNIFPDTDLSKKLGI
                     SRKSLWEKRKKYEISKKK"
     gene            167..1327
                     /locus_tag="ROE18_001557"
     CDS             167..1327
                     /locus_tag="ROE18_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HDX3651720.1"
                     /translation="MKSARKNKNIIIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLMLDEKVVGHIDFKSQFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIYNSQIEKIKENFQQIKNNLNAQKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVIFLVESFDVNGFEFELKEAYLKKFIQNYLPPDRIFIFP
                     LKNINIFHAHLNPGLESIIAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYG
                     IEVIVLPEFVFCDQCRMIVSTRSCPHGCHHHLHYNSQSLKDLLRAGIIPPAIFIRKEV
                     SSVILTSLFPNRLKNMQKIYNELFPTDGILEYKNDEEFYQKLLEIHQMSYMV"
     gene            1332..1832
                     /locus_tag="ROE18_001558"
     CDS             1332..1832
                     /locus_tag="ROE18_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HDX3651721.1"
                     /translation="MQKLFLTFFYSGSVKKASGTFGTIAALIPAFFILKYLGINTLFL
                     LSILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGVFLACAIAASVENSIVNFILAFV
                     LFRLFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDI
                     NLKDLF"
     gene            1911..2174
                     /gene="rpsT"
                     /locus_tag="ROE18_001559"
     CDS             1911..2174
                     /gene="rpsT"
                     /locus_tag="ROE18_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HDX3651722.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGNK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            2193..3260
                     /gene="prfA"
                     /locus_tag="ROE18_001560"
     CDS             2193..3260
                     /gene="prfA"
                     /locus_tag="ROE18_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HDX3651723.1"
                     /translation="MLASKLDPFFKRFEELNSLLSSSDILNDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGTGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(3274..4029)
                     /locus_tag="ROE18_001561"
     CDS             complement(3274..4029)
                     /locus_tag="ROE18_001561"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HDX3651724.1"
                     /translation="MNFESIISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGL
                     DLVYNDKENLRVEFPKKADENTIKDAIISLCMSAKSEQNFSGVEKELNEFMLSFNSVA
                     LATLNANGEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAVS
                     VILRKRLRYRVNASFLERGERFDQIYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKG
                     RFVKGFGQAYDIENGNVAHVGASGNPHKFLHKH"
BASE COUNT         1520 a          618 c          624 g         1355 t
ORIGIN      
        1 attaatttaa atgataatga aaaaaatatc aatagcaatg aaattttaac tatagatgag
       61 tatgtaaaat atgttattat aaattaccaa aatatatttc ctgatactga tctttcaaaa
      121 aaattaggca tttcacgtaa atctttatgg gaaaaaagga agaaatatga aatcagcaag
      181 aaaaaataaa aacattatca tagatcaaaa tgaatttggc atcttatcac ttattaaaga
      241 aggtttgcta ggcacttgca ctcatttaat gaatgaaaaa gaagtcaatg aaatcattaa
      301 atcaggaaaa tttaaaggag aaagctttcc ctatccctta agctttgcac caaaaaatgc
      361 cgaagaagca ctaaatgata taaaatctgg cgatagaatc gatctcatgc tagatgaaaa
      421 agtagtagga catatagatt ttaaaagcca atttaaaaat aataaaaatt tttctgatat
      481 tttcagtcct aacacttgct ctttagaaga catgggaaca acttgcataa gtggaaaaat
      541 agaaatttat aattctcaaa ttgaaaaaat aaaagaaaat tttcaacaaa tcaaaaacaa
      601 tcttaatgca caaaaaatta ctgctatagt ttcaagtttt gatcctttgc atcgtgccca
      661 tgaaagaatg tttcgttgga ctattgataa agcagattta gttgtaattt ttcttgtaga
      721 atcttttgat gtaaatgggt ttgaattcga acttaaagaa gcatatttga aaaaatttat
      781 tcaaaactat cttccaccgg atagaatttt catttttcca ttaaaaaata ttaatatttt
      841 tcacgctcat ttaaatcctg gcttagaaag tattatcgca aaaagtctag gttgtaccaa
      901 actagtagta ggacaaaatc atacaggact tggaatgttt tatgatgata accaaccaaa
      961 aaccatactt gatgattttt ccaaggacta tggcatagaa gtgatcgttt tgcctgaatt
     1021 tgtattttgc gatcaatgtc gcatgattgt tagcacaaga tcttgccctc atggttgtca
     1081 tcaccatttg cactataatt ctcagtcttt aaaagattta ctaagagcgg gtatcattcc
     1141 tccagcaatt ttcatacgca aggaagtatc tagtgttatt ttaacttctc tttttccaaa
     1201 tagattaaaa aatatgcaaa aaatttataa tgagcttttt ccaactgatg gaattttaga
     1261 atacaaaaat gatgaagaat tttatcaaaa acttttagaa attcatcaaa tgtcttatat
     1321 ggtgtaataa aatgcaaaaa ttatttttaa ctttttttta ttcaggttct gtaaaaaagg
     1381 caagtgggac ttttggtact atcgctgctt taatacctgc tttttttata cttaaatatc
     1441 tcgggattaa tactttgttt ttactaagca ttttaatttt tgttgcaagt attcgtgtta
     1501 tagatgatta tgaaaaaaaa acaggaattc acgatgacaa acacatagtt atcgatgagg
     1561 ttgctggagt ttttcttgct tgtgctattg cagcaagtgt tgaaaactcg atagtcaatt
     1621 ttattttggc ttttgtttta ttcagactct ttgacattac aaaaccttct attattggta
     1681 agatagataa aaaagtcaaa ggcggactag gtgtaatgct tgatgatatg ttagcaggat
     1741 tgtttgctgg acttttaagt gcggtaattt atggattttt acttaaattt aatttagttt
     1801 tttgggatat aaatttaaaa gatttatttt gaaattttgc ttaaattaat taaattttaa
     1861 attttattct tatataattt agtctttaat ttcaaaaaag gaaaatataa atggcaaacc
     1921 ataaatctgc tgaaaaaaga gcaagacaaa ctattaaaaa aacagaaaga aatagattct
     1981 atagaacaag acttaaaaat ataactaaag ccgtaagaga agctgcagca aatggaaata
     2041 aaaatgctgc taatgaagct ttaaaagtag ctaataaaag cattcatgct atggtaagtc
     2101 gcggtttcat taaaaaacaa actgcttctc gccgtgtaag ccgcttagcc cttttagtaa
     2161 ataaaatcgc ataattttct atatagtttt taatgttagc tagcaaacta gatccttttt
     2221 ttaaacgctt tgaagagtta aattctcttc ttagcagttc tgatatactc aacgatatca
     2281 gtaaaatgac tacactctct aaagaacaaa aaaatttaga acctatcgtt ttaaaagcta
     2341 aagagtattt aaaaacttta gacaatatag aagaaaataa agctttgcta aacgatccag
     2401 aacttgggga acttgcaaaa gaagaactaa aaactttaga agaattaaaa ccgaaacttg
     2461 aagaagagat taaaatttta cttcttccta aagatcccaa tgatgaaaga aatatttttc
     2521 ttgaaattcg tgcaggcaca ggtggcgatg aggcatcttt atttgtggga gatcttgtaa
     2581 aagcttatgc aagatatgct gaaaatcgcg gctataaact tgagattgta agctctagtg
     2641 aaggaagcgt aggtggattt aaagaaatca tcatgcttgt taaaggaaca ggggcttatt
     2701 caagacttaa atatgaaggt ggaacgcacc gtgttcaaag agttcctcaa acagaatccc
     2761 aaggacgcgt gcatacttct gctatcaccg tggcagtaat gccagaagtt gatgatatag
     2821 aaatcgaaat caatccaaac gatcttaaag ttgatgttat gcgatcttca ggacatggtg
     2881 gacaaagtgt aaatactact gattcagctg ttcgtatcac tcatatccct acaggtatag
     2941 ttgtagtcaa tcaagatgga aaaagccaac acaaaaataa agaaagtgcg atgaaagtcc
     3001 taaaagcaag gctttatgaa atgcaagaga gtgaaagact agcaaaagaa agtgaagcaa
     3061 gaaaatcaca agtaggaagc ggagatagaa gcgaacgcat tcgcacttac aattttccac
     3121 aaaatcgtat cagcgatcat agaataaatc ttactttata tcgcttagat gccattatgc
     3181 aagatgggct ttttgatgaa atcatagaac ctttaatcac tcatcatcaa gcccaagctt
     3241 tacaagaaca aaatttataa gattttatat aaattaatgc ttatgtagga atttatgtgg
     3301 atttccacta gcacctacat gtgcaacatt tccattttct atatcataag cttgaccaaa
     3361 accttttaca aagcgtcctt ttttaaattc aagctttact agatgaaaat caagcatctt
     3421 gcgtatagtt ttaatgcctc cttctcctcc ggtttgtttt tcaaactcat cataaatttg
     3481 atcaaatctt tcacctctct ctaaaaagct tgcatttact ctatagcgca atcttttacg
     3541 aagtataaca gaaacagctt tactctcatc ctctaaaaac attatttcta tattgtttgg
     3601 atttactttg atgttgttaa aatgttcact tacttcactt atataaatat aatttcccca
     3661 ttgtgtgctt acaaaaggtg catacgagca aacaacttct ccatttgcat ttaaagttgc
     3721 caaagctaca gaattaaaac ttagcataaa ttcatttaat tctttttcta caccactaaa
     3781 attttgctcg ctctttgcac tcatgcaaag ggatattata gcatctttaa tcgtgttttc
     3841 atcggctttt ttaggaaatt ccactcgtaa attttcttta tcattgtaaa caagatctaa
     3901 gccattaaaa tcaacacttt ttagaaaaac atcttgtact tgctcaatac caccaaattt
     3961 tttacaaaga tcgactaaat ttgatttatg atgatcattc atatgagaaa taatgctttc
     4021 aaaattcatt tttatccttt cttgatttta aaataaaata ttaaaaaaaa tggtatcaat
     4081 tatcaaatta aaaagcactt aaaatatata aattatc
//
LOCUS       DAPOLW010000135         4042 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.135, whole genome shotgun sequence.
ACCESSION   DAPOLW010000135 DAPOLW010000000
VERSION     DAPOLW010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4042)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4042)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4042
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.135"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            49..1323
                     /locus_tag="ROE18_001562"
     CDS             49..1323
                     /locus_tag="ROE18_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HDX3651725.1"
                     /translation="MYLQISDLKKELILKKGILHFDFTASALALKCVEKEISKILPTY
                     ANTHSDSSLNSFKTQQIYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIY
                     IPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFL
                     EKTLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISC
                     QYYDALFISSHKLIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEA
                     LEEGGTPGILQLIRASLAFKIKDSIGIKNIEKKEEILKDYFFKKLKTIPNLILYAKNL
                     KTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKP
                     GWLRISLHYTHEKEDIDYFFNALNKTIIKLSH"
     gene            complement(1320..2144)
                     /gene="purU"
                     /locus_tag="ROE18_001563"
     CDS             complement(1320..2144)
                     /gene="purU"
                     /locus_tag="ROE18_001563"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HDX3651726.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEGMFFF
                     RALLEGEFDKEAFIGTLEAMLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSN
                     ELEANIKAVISNHNSLKDLVEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVL
                     AKYMRILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATTHFVNNNL
                     DEGPIITQAVSPVNHEFTWQDMQQAGRNIEKDVLSKALDLAFEDRIFIYNNKTIIF"
     gene            complement(2141..3259)
                     /locus_tag="ROE18_001564"
     CDS             complement(2141..3259)
                     /locus_tag="ROE18_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HDX3651727.1"
                     /translation="MQISKISLKNNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKI
                     CDYDIELYDIKPKDFEKIMQKLGAQGFGRSFFVYKFKNYDLALARTENKISHGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGVGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKIASESLKLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQ
                     ELDLEKQIFGFESIFKSLEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRTKL
                     KKEYLKYANQAFYLDDISDFELAKIAFEMPLKEWLGLWSKKRIEQAKRLGLYENKFES
                     KILAKDFINAGFCGKILGLKLQEARENELKEYIKGLAK"
     gene            complement(3228..3719)
                     /locus_tag="ROE18_001565"
     CDS             complement(3228..3719)
                     /locus_tag="ROE18_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HDX3651728.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMEFVCEELDTPQDLEDKISMAKFEEEQKIQNNIEISTQENKEFKKEEPFLQNEILNP
                     SVMTEVQTLNEDIFLKHLRERILVLFEGLNSIKKDDLENRLNLTINFLEFLLANIEDK
                     LKK"
     gene            complement(3716..3964)
                     /locus_tag="ROE18_001566"
     CDS             complement(3716..3964)
                     /locus_tag="ROE18_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDX3651729.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPNNQNAIDAVRR
                     LSGFRSKHKDLNTQMLDFFINMKSDEEINEFKRWLIKI"
BASE COUNT         1384 a          684 c          498 g         1476 t
ORIGIN      
        1 ttttataaag catttttata gtataatttt agcaaatttt tataaggatt gtatttgcaa
       61 atttcagatt taaaaaaaga attgatctta aaaaaaggta ttttgcattt tgacttcaca
      121 gcaagtgctt tagctctaaa atgtgtagaa aaagaaattt caaaaattct cccaacctat
      181 gcaaatacac attctgatag ctctttaaat tcttttaaaa ctcaacaaat ttacgaacaa
      241 gcaagaaaag atataaaaaa aagtttatca ttggatgaaa attttgccct tatagcttgc
      301 ggaacaggat caagcagtgc tattaaaaaa tttcaagaat tgatcggcat ttacattcct
      361 cctcttgtaa aagaaagata ttttacgcaa attgataaaa atactttacc tttagttatt
      421 gtagggcctt atgagcatca ttctaatgaa ctttcatttc gagaaggctt gtgcgaatgt
      481 attagaattc ccttagataa aaatggagaa attgattttg attttctaga aaaaacttta
      541 caaaaaaata aaaaaagaaa aataatcgct agcttttctt tagcttcaaa tgttactggg
      601 atattaagtg attacaaacg catttctgaa atggttcgta aatttaaagg gatagttgct
      661 tttgatgcat ctagtttcat tccttataaa aacatatctt gtcaatacta tgatgcgttg
      721 tttataagtt ctcataaatt aatcggtggc attggcggtt ctggactttt agccatcaaa
      781 aaagatcttt gtggaaacaa gcctagcttt gcagcaggtg gaactgtggg ctatgtttct
      841 cgcacttcac aatgctacct ttgcaatgaa gaagctttag aagaaggagg aacacctgga
      901 attttacaac tcattcgcgc tagcttagct tttaaaatca aagattctat agggattaaa
      961 aatatagaaa aaaaagaaga aattctaaaa gattattttt ttaaaaaact aaaaactata
     1021 cctaatttaa ttttatacgc aaagaattta aaaacccgat tgcctatttt tgctttcaat
     1081 atcaaaggaa tttctccttt tgatatcgct tatgaactta gtaaaaaata ccacatagaa
     1141 acacgcgctg gatgtgcttg tgctgggcct tatggtcatg atttactagg cttaaaagac
     1201 aatcaaaaac ttaaaacaaa accaggctgg ttaagaataa gcttgcatta tacgcatgaa
     1261 aaagaggata ttgattattt ttttaatgct ttaaataaaa ctataataaa attatcgcat
     1321 taaaatatta tagttttatt attatatata aaaattctat cttcaaaagc caaatcaagt
     1381 gcctttgaaa gaacatcttt ttctatattt ctacctgctt gctgcatatc ttgccaagta
     1441 aattcatggt ttacaggcga aacagcttga gtgataatag gaccttcatc aagattatta
     1501 tttacaaaat gtgtcgtagc tccaattatt ttaacccctc tttcaaaggc ttgtttataa
     1561 ggatttgctc ctataaatgc aggtaaaaaa gaatggtgaa tatttataat cttgccttca
     1621 aaatgcctaa caaaatcagg agataaaatt cgcatatatt ttgctaaaac caaataatca
     1681 aatttatatt gttcaagaca ttttaaaatc tgattttctt gctctttacg atctaaattt
     1741 tcagcgctga taaaatgata aggaatttca aatttctcaa ctaaatcctt taaagagttg
     1801 tgatttgaaa tcacagcttt gatatttgct tcaagttcgt tactataatg ctttattagc
     1861 aaatctccca aacaatgact ttctttagta gcaaaaacaa caatatcttt ttttctcttc
     1921 tcgcaaagct ctatcaaggc ttcttgtcca agcatagcct caagcgttcc tataaaagct
     1981 tctttatcaa actcaccttc taaaagagca cgaaaaaaaa acattccttc gcctacaaat
     2041 tcatcgtttt tcactatatt gatatgatat ttaaaaataa catcagaaat tctatagatt
     2101 aaaccttttt gatctttggt gcaaattttt aatacagaaa tcatttagct aaacctttta
     2161 tatattcttt taattcattc tctcttgctt cttgaagctt taggccaaga attttaccac
     2221 aaaatccagc atttatgaaa tcttttgcta aaattttact ttcaaactta ttctcataaa
     2281 gccctaatct tttagcttgc tcaatacgct ttttactcca aagtccaagc cattccttca
     2341 aaggcatttc aaaagcaatt tttgctagct caaaatcact tatatcatca agataaaaag
     2401 cttgatttgc gtattttagg tattcttttt taagtttagt tcttttaaaa aatatatctt
     2461 tttctaaatt aaaaaaattc aaatacaaat acaagaataa agcatcgctt tttacaaatt
     2521 ctctactttg tctgagcaaa ttttgaaatt ccaaactctt aaaaatactc tcaaagccga
     2581 aaatctgttt ttctaagtca agttcttgca aatatctata gccaacatca agtctagggc
     2641 ttttaaagaa tttataaagc tccgcattga tcctatcttt gctaagatca gttatatcca
     2701 tactttgcat caatttcaag ctttcgctag ctatcttaaa gttaaacctt gaagcaaata
     2761 ctactgctct taacactctt aaactatcct cttgaaagct ttgtttatca atatgcctta
     2821 aaaagcctac tcctagatct tttaatcctc cataaaaatc taaaaactca tcgttaaaaa
     2881 gattaatcat catagaattt atggtaaaat cgcgtctttt ggcgccaagt ttttcatcat
     2941 tgcaaatttg aacttcaaaa cctttatgtc catggcttat tttgttttcg gttctagcaa
     3001 gagctaaatc ataattttta aacttataca caaaaaaact tcttccaaaa ccttgtgcac
     3061 ctaatttttg cataatcttt tcaaaatctt taggttttat atcataaagc tctatatcat
     3121 agtcgcaaat ttttaaacct aaaaacaaat ccctaacgct acctccaacc aaatacgctc
     3181 gtttggtata aggctttaaa aactcagcga taaactgtaa atcgggatta ttttttaagc
     3241 ttatcttcga tatttgcaag caaaaactct aaaaaattta tggtcaagtt taacctattt
     3301 tcaagatcat ctttttttat gctatttaaa ccttcaaaaa gaactaaaat tctctctcta
     3361 agatgtttta aaaaaatatc ctcattaagc gtttgaacct ctgtcataac actaggattt
     3421 aaaatttcat tttgtaaaaa aggctcttct tttttaaact ctttattttc ctgagtagaa
     3481 atttcaatat tattttgtat tttttgctct tcttcaaatt ttgccataga aattttatct
     3541 tctaagtctt gcggagtatc aagctcttcg catacaaact ccataggtgg taattcatct
     3601 tttatttcag tttttctatt taattcttgt tcttttaaaa tttcattttg tcttctttgc
     3661 tcttccatga tagagctaac ttcgctaatg gtttttttag ctaaatcttc caaattcata
     3721 tttttatcaa ccacctttta aattcattaa tttcttcatc gcttttcata ttaataaaaa
     3781 aatccaacat ttgagtgttt aagtctttat gcttggatct aaaaccacta agacgacgaa
     3841 ccgcatcgat agcgttttgg ttattcggat cttcttttaa gatattttta taaatttcta
     3901 aagcttcgtc ttttaaccct tgagcctcat agatagaagc ttcagtgact gtatttttca
     3961 tcactgtttc ctaaaatttt tctttaattc tagcaaaaag ctttttaatt tatctttaag
     4021 aaaataatat gatttttaat gc
//
LOCUS       DAPOLW010000136         4027 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.136, whole genome shotgun sequence.
ACCESSION   DAPOLW010000136 DAPOLW010000000
VERSION     DAPOLW010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4027)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4027)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4027
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.136"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..1078
                     /locus_tag="ROE18_001567"
     CDS             <1..1078
                     /locus_tag="ROE18_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HDX3651730.1"
                     /translation="PKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSI
                     LNAQAKEELILQSIKKMQKSGIGTIGEISSFGSDLDPCLKASHKGMRIVFFNEILGTN
                     ENQVEDKKQEFLKRFENSLKFKNDFFIPAISIHSPYSTHPSLAHFALDLAKKQNLLAS
                     THFLESKAENIWLRESKGGFKKWLENFTLHPKPLYTPKDFVKLFKGVRTLFTHCVYLK
                     EYEWLDKNLHSITHCAFSNRLLSQKSLDLKTALKSGLNIHLGTDGLSSNISLSLLDEM
                     RANLLIHKNFDLLELASKLLQMVTLYPARALNLNLGELKKGKIADFNVFELGECDKKQ
                     APLQFILNAKEVDKLFIKGKECKF"
     gene            1066..1962
                     /gene="sppA"
                     /locus_tag="ROE18_001568"
     CDS             1066..1962
                     /gene="sppA"
                     /locus_tag="ROE18_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HDX3651731.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIVIWILIPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVIDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDELSNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQTS
                     SLISKSLIEIAYKTNSSFINAR"
     gene            2041..3072
                     /locus_tag="ROE18_001569"
     CDS             2041..3072
                     /locus_tag="ROE18_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HDX3651732.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLCADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGDSLPLNTKIKCTEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYDLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
     gene            complement(3314..3664)
                     /locus_tag="ROE18_001570"
     CDS             complement(3314..3664)
                     /locus_tag="ROE18_001570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651733.1"
                     /translation="MSYLIQNIKTTNDLKEKLYTVSKKWLLEHILYKDVKVEQYRRSS
                     LTSEDDGEVSFEEVKEEKDDENTVYLYTCECVEQMHDVPFGIHQKIQLKGVKFKCKKC
                     KEAIQFYKKYSENF"
     gene            complement(3640..3936)
                     /locus_tag="ROE18_001571"
     CDS             complement(3640..3936)
                     /locus_tag="ROE18_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HDX3651734.1"
                     /translation="MLLDKLIPTWNEKYSIHDTMIDIQHQKLCELASKVESAVYKFVK
                     REELKEILTELFNYMKEHFSNEEDYMQEIHYPYLNEHKIMHKISFVICLILYKT"
BASE COUNT         1369 a          498 c          704 g         1456 t
ORIGIN      
        1 acctaaaaat tcggttattt tacctgcttt tataaatcct cacacacatt tagaatttag
       61 tgcaaattca acaactttac attttggaga atttttaatt tggcttaaaa gtgttataaa
      121 ttctcgttcc atattaaatg cacaggccaa agaagaatta atacttcaaa gcattaaaaa
      181 aatgcaaaaa agtggtatag gcactatagg tgaaatttca agttttggga gtgatttaga
      241 tccttgctta aaggctagtc acaagggtat gcgtatagta ttttttaatg aaattttggg
      301 tacaaatgaa aatcaagttg aagataaaaa acaagaattt ttaaaaagat ttgaaaattc
      361 tttgaaattt aaaaatgatt tttttatccc ggcaatttcg attcattctc cttattcaac
      421 tcatcctagt ttggctcatt ttgctcttga tttagctaaa aagcaaaatt tactagctag
      481 tacgcatttt ttagaaagta aggctgaaaa tatctggctt agagagtcta aagggggttt
      541 taaaaaatgg cttgaaaatt tcacacttca tcctaagcct ctttatacac caaaggattt
      601 tgttaaactt tttaaaggag taaggactct ttttacgcat tgtgtttatc taaaagaata
      661 tgaatggtta gataaaaatt tacattctat tacacattgt gcattttcaa atcgcctttt
      721 aagtcaaaaa agcttagatt taaaaacggc tttaaaaagt ggattaaata tccatttagg
      781 aaccgatgga cttagctcaa atatttcatt gtctttactt gatgaaatgc gcgcgaattt
      841 gcttatacat aagaattttg atttattaga gttagcctct aagcttttgc aaatggtaac
      901 actttatcct gcaagggctt taaatttaaa tttaggagag cttaaaaaag gtaaaattgc
      961 tgattttaac gtatttgagc taggagaatg tgataaaaag caagctcctt tgcagtttat
     1021 tttaaatgct aaggaagtgg ataaattatt tataaaagga aaagaatgca aattttaaaa
     1081 tcatttttta aggctttagg atgcggtata aaatttatca atacttattt taaaaccttt
     1141 gttttattgt tgattgttat atggatttta atacctagtg caaattcaag ctctaatctt
     1201 gcaaatttag aacgcattga tttaaagggt gaaatttttg acagctctgc ggttttggaa
     1261 aaaattatca atgctaaaaa tgatagcaat atcaaaggag tgctttttgt tatagactct
     1321 cctggtggag cttttgctcc tagcatggaa ctagctctag ctataaagga tttaaaaatt
     1381 aaaaagcctg tgcttgttta tgcaagcgga actatggcaa gtggaagtta tttagcagga
     1441 gttggagcaa ataaaatttt agccaatccg gcaagtttta taggctctat cggtgtgatt
     1501 atgcaaggag ctgatttaag cggattggct aataaactcg gtattaaaga acaaactatt
     1561 caagcgggtg aatttaaaag tgctggaact tttgcaagag cttggaatga gaatgaaaga
     1621 aattttttac agggtttaat tgatcaaagt tatgatcttt ttacaggttt tgttgccaag
     1681 gaaagagcat tagatcttaa caaaaaagat caatgggcaa atgcaagagt gtttttagct
     1741 gccaaggcta aggagcttgg tcttatagat gagcttagta attatgaaaa tgctaaaaag
     1801 gagcttgaaa aacttgctaa tgtttcaaat cctgtttgga aagaagaaga taagattgat
     1861 aaatttctta accgcctaga aggacaaaca tcaagcttga taagtaaaag cttaatcgaa
     1921 atcgcttata aaactaatag cagttttata aacgctagat aaaatatata aatattttta
     1981 tttaattttt gtaatatttt tatgcaataa ttatttatat cttagataag gagtaaaata
     2041 atgaaaaaaa atattgtttt tttcgaagtt aaaggtggga gtgataaagg tgaagatggc
     2101 tatagaaaag ataccatgcc tatggtaaat gccttaaaag ctaagggttg gaatgctgag
     2161 gtgatttttt ttgaagtggg taaaaaagat gaaatttaca aatatgtgaa agaaaatttt
     2221 gatggttatg tttctcgcat caatcctggc aatcttaaag aagaaaatga gtattttgat
     2281 atgttaagaa aactttgtgc cgataagctt gtaggtatgc ctcatcctga tgctatgata
     2341 ggttatggtg ctaaagatgc acttacaaaa ttagcagata ctgatcttgt tccaagcgat
     2401 acttatgctt actatgatat taagactttt aaagaaaatt ttccaaaaag tttggctaaa
     2461 ggtgaaaggg ttttaaaaca aaatcgtggc tctacaggag agggaatttg gcgtgtgagt
     2521 gtagagggta atgttagtgg agatagtttg cctttaaaca caaaaatcaa atgtacagaa
     2581 gctaaggata atcatgtaga acatagagag cttggggaat ttatggattt ttgcgagcaa
     2641 tatatcatag gtgataatgg tatgcttgtg gatatgactt ttttaccgcg cattaaagaa
     2701 ggtgaaatca gacttttaat gctttataac acccctgtaa atgtagtgca taaaaaacca
     2761 gccgaagatg ctgatgcttt ttctgctacg ctttttagtg gggcaaaata tcgctatgat
     2821 aagccagaag attggaaaac tttggtggat atgtttttag gcgagcttcc taaggtaagg
     2881 gaaaaattag gcaattacga cttaccattg atttggacgg ctgattttat tttagatact
     2941 gatgaaaagg gcaatgataa atatgtttta ggcgagatta attgttcttg tgtaggtttt
     3001 acttctcatt tagaacttgc tgatgaagta gcttcaaata ttattaatat tgtaagtaaa
     3061 actaaggctt agtctttaag cttaatgtcc attttattat tgtaaaatgg acattctttt
     3121 tctattgttt ttaagtttga gctatattct atcgagaaaa aattttcaca aaatgagcat
     3181 tttgtatctt tggttagtat aggataggaa tagtcaaatt tatccaaaat aaaatatttt
     3241 atttttttat ccttaaattt ccttctttgt ctaacttata ctttatttat tattttaacg
     3301 cataaatagt taattagaaa ttttctgaat attttttata aaactgtatg gcttctttgc
     3361 attttttaca tttaaatttt acgcccttaa gttgaatttt ttgatgaatt ccaaatggta
     3421 catcatgcat ttgttctacg cattcgcatg tataaagata aactgtattt tcatcatctt
     3481 tttcttcttt gacttcttca aagcttactt ccccatcatc ttcagaagtt aaagaagatc
     3541 ttctgtattg ttcaactttc acatctttat agagtatatg ttctaaaagc cattttttag
     3601 aaactgtgta aagcttctct tttaaatcat tagtggtttt tatgttttgt ataagataag
     3661 acatatcacg aatgatattt tatgcatgat tttgtgttca tttaaataag gataatgaat
     3721 ttcttgcata taatcttctt cattactaaa atgttctttc atatagttaa aaagttctgt
     3781 taaaatttct ttgagttctt ctcgttttac aaatttataa acagcacttt caaccttgct
     3841 tgcaagttca caaagttttt ggtgttgaat gtcaatcatt gtgtcatgaa tactgtattt
     3901 ttcattccaa gttggaatta gtttatctaa aagcaccttc tttaattttt atatttaaaa
     3961 ttaatttaat atatttgagt gaaatattac ataatatttt attaaaatat tattaattag
     4021 aaattat
//
LOCUS       DAPOLW010000137         3939 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.137, whole genome shotgun sequence.
ACCESSION   DAPOLW010000137 DAPOLW010000000
VERSION     DAPOLW010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3939)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3939)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3939
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.137"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..2533
                     /locus_tag="ROE18_001572"
     CDS             <1..2533
                     /locus_tag="ROE18_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002917300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDX3651735.1"
                     /translation="NNGMSVSFVNFLNYLNLNEYNVYVAIDSWQVRQSPTCMKYINQI
                     RDKVYILGNPNILSQTQEENWLLSNPVYKNKRANQEQENIFARCFERDFRCLYGDSKF
                     NSLISFDGYGELWVYRFAYAKTNAKKIIYLHNDMKGEFDVRFPYLEKIFNVYKYFDHI
                     LSVSRELSDLNRDNLSDTYQVECDKFDFMNNIIDYKNILFKSGFVLEYLEDESIFNDG
                     GKVFINIARLSPEKNQLMLIKAFQKISSEFNNIKLMILGDGPLKEDLKLYILKNNVKN
                     VYLLGNRNNPYPYLRKADCFILSSLHEGQPMVLLESLVLKKPIIATNITGNRSVLNSR
                     GGLLVNPDIDSLSKAMIKYLKESIQTCNFDFVEYNNIILEKFNYLFGVSFEGYKNDRC
                     ILSPCIIMAKPDGFGMRLFAMMAGLLLSEKTNLPFYFKWGKIEDVIGNTHEMFNSIKH
                     IPFALGKVGDIFSEEFIQKYYIDDCKDISSNHGFGIHQEKKTFNDIKNGPFEQKWGWY
                     APGIEGGALSNWIEGYNEEQCYKDFAEIYKKIKFSNKYQNIIKYAEQTASKLGEFIAI
                     HIRGADIVYSSTYKKASLYAFVGDKYFPYEIAIEIIKNKIKDYKIVIFSQDIIASKKL
                     IDYFNNEKIILADQFASEFLDVTERAFFEMNFLSYAKLIYTPGISLQKSAFSQCPSFF
                     SGIKKDISFHEIFSKEKQYQIIEENINKLQLDSMYKSMAFFRLYQLSLDLKKDFKISL
                     QFIEKAMLEDASNTAWIIHWIHLNLRYDHYDIVEKYLDKNLVKIQHDLLVTLLLFRGK
                     IYKNICFDLMKIKKRCEKYSNLLFLINEISRSMKKQKKGIAWKKN"
     gene            2518..3792
                     /locus_tag="ROE18_001573"
     CDS             2518..3792
                     /locus_tag="ROE18_001573"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651736.1"
                     /translation="MEKKLAVHLFGALRTYEQTYKSFFDNIIDANEQDGWKIDIFLHT
                     WDQFDTGSAHSHLKYPGLTGVKIGIHDLEEIIGIYQPKKYLIESPISDGNKSGMVVTL
                     EKVNSLKLDYEKECGVKYDYHLYTRPDIMFFKPLRLDEYIKVYNPVRKPQNGWEGVFR
                     EFPLPPKTNFCSSNAFRFGLLDSRMPNEGDLVWFSNFGLVKHPHKAYLEDESIYNIFI
                     KYRWEYEFRPWRSGMQQINQYMFVDIKKSDLDALNQKILILNEEKLSLQKSLDSLPIK
                     KQNMELICLEQDIEIKDLQLYQLRKKIGLNHKDNVIYSNSAKFIIYNHLSYKLGRILI
                     KYNSFFGYIKLPFILWAVFIVHKTVDFKFKSLPLKNYTDYDEAIIEKNSTTYQLGEKF
                     IKACKSWYKGGLIKFFFQIRNINKVKQNARKY"
     gene            3776..>3939
                     /locus_tag="ROE18_001574"
     CDS             3776..>3939
                     /locus_tag="ROE18_001574"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651737.1"
                     /translation="MQGNIKNALEEWNFDIIQDIYKEDLAKQQSKEYIDFLYQIGNVD
                     ELILLFKNTP"
BASE COUNT         1506 a          384 c          635 g         1414 t
ORIGIN      
        1 taataatggc atgagtgtat cttttgtaaa ttttttaaat tatttaaatt taaatgagta
       61 taatgtctat gttgctattg attcatggca agttagacaa agtccaactt gcatgaaata
      121 tattaatcaa ataagagata aggtttatat tctaggtaat cctaatattt taagtcaaac
      181 tcaagaagaa aattggttgc taagtaatcc tgtttataaa aataaacgag caaatcaaga
      241 gcaagaaaat atttttgcaa gatgctttga acgtgatttt agatgtttat atggggattc
      301 gaaatttaat tctttgatta gttttgatgg ttatggggag ttatgggttt atagatttgc
      361 atatgctaaa acaaatgcaa aaaagattat ttatcttcac aatgatatga aaggcgaatt
      421 tgatgtaaga ttcccgtatc ttgaaaaaat ttttaatgtt tataaatatt ttgatcacat
      481 tctttctgtt tcaagagaat taagtgattt aaatagagat aatttatctg atacttatca
      541 agtagagtgt gataaatttg attttatgaa taatattata gattataaaa atatattatt
      601 taaaagtggt tttgttttag agtatctaga agatgaaagt atttttaatg atggtggaaa
      661 agtttttatt aatattgcta gattatcacc agaaaaaaat caattaatgc ttattaaagc
      721 ttttcaaaaa attagctcag aatttaataa cattaagcta atgatattag gcgatggacc
      781 tttaaaagaa gatttaaaat tgtatatttt aaaaaataat gttaaaaatg tatatcttct
      841 tggaaataga aataatcctt atccttattt aagaaaagct gattgtttta tattgagttc
      901 attgcatgaa gggcagccta tggttttact cgaatcactg gtgttaaaaa aaccaataat
      961 agcaacaaat ataacaggca atagatcggt tttaaattca cgtggaggat tattggtaaa
     1021 tcctgatatt gatagtttgt caaaagctat gataaaatat ttaaaagaat ctattcaaac
     1081 ttgtaatttt gactttgtcg agtataataa tattatttta gaaaaattta attatctttt
     1141 tggagttagt ttcgaagggt ataaaaatga caggtgtata ttgtctccat gtatcattat
     1201 ggcaaagcct gatggctttg gtatgagact gtttgcgatg atggcagggt tattgttatc
     1261 cgaaaaaact aatttgccat tttattttaa atggggaaag attgaagatg tgatagggaa
     1321 tacacatgaa atgttcaatt ctataaagca tattccattt gcattaggta aagttggtga
     1381 tatatttagt gaagaattta tacaaaaata ttacattgat gattgtaaag atatatcaag
     1441 caatcatgga tttggaattc atcaagagaa aaaaactttt aatgatataa aaaatggtcc
     1501 tttcgagcaa aaatggggtt ggtatgctcc aggaatagaa ggtggagcat taagtaattg
     1561 gatagaaggc tataatgaag aacaatgtta taaagatttt gcagagattt acaagaaaat
     1621 aaaattttca aacaaatatc aaaatataat taaatatgct gaacaaactg ctagtaaatt
     1681 gggcgaattt atagcaatac atatcagagg tgcagatata gtttattctt caacatataa
     1741 aaaggcttct ttatatgctt ttgtgggaga taaatatttt ccatatgaaa ttgctataga
     1801 aattataaaa aataaaatta aagattataa aattgtgatt tttagtcaag atattattgc
     1861 tagcaaaaaa ttaattgatt attttaataa tgaaaaaatt attttagctg atcagtttgc
     1921 ttctgaattt ttagatgtta ctgaaagggc gttttttgaa atgaattttc tttcttatgc
     1981 aaaattgatt tatactccag gaatttcttt gcagaaatct gcattttctc aatgtccttc
     2041 ttttttctct ggtatcaaaa aagatatttc atttcatgaa attttttcca aagaaaagca
     2101 gtatcaaatc attgaagaaa atattaataa attgcagtta gattctatgt ataaatccat
     2161 ggcatttttt agattatacc aattatcttt agatctaaaa aaagatttta aaatatcctt
     2221 gcagtttata gaaaaagcta tgcttgaaga tgctagcaat acggcttgga taattcattg
     2281 gattcattta aatttgcgtt atgatcatta tgatattgta gaaaaatact tagataaaaa
     2341 tttagttaaa atacaacatg atttattggt aactttgtta ttgtttaggg gtaaaattta
     2401 caaaaatata tgttttgatt taatgaaaat aaaaaaaaga tgtgaaaaat attcaaatct
     2461 tttattttta attaatgaaa ttagtagatc tatgaaaaaa caaaaaaaag gtattgcatg
     2521 gaaaaaaaat tagcagttca tttgtttggt gctttaagaa cttatgaaca aacttataaa
     2581 agtttttttg ataatattat agatgcaaat gagcaagatg gttggaaaat agatatattt
     2641 ttacacacat gggatcaatt tgatactgga agtgctcatt ctcatttaaa gtatccagga
     2701 ttaacaggtg taaagatagg aattcatgat ttggaagaaa ttataggaat ttatcaacca
     2761 aaaaaatatc ttatagaatc ccctatttcg gatggcaata aatctggaat ggtagttact
     2821 ttggaaaagg taaattcttt aaaattggat tatgaaaaag aatgtggcgt gaagtacgac
     2881 tatcatttgt atacaagacc tgatattatg ttttttaaac ctttaagatt ggatgagtat
     2941 attaaggttt ataatcccgt tcgaaaaccg caaaatggtt gggaaggcgt atttcgagag
     3001 tttcctttgc cacctaaaac aaatttttgt tcatccaatg cttttaggtt tggcttattg
     3061 gattctagaa tgccaaatga aggtgattta gtatggttta gtaattttgg cttagttaag
     3121 catccacata aggcatattt agaggatgaa agtatatata acatatttat caagtataga
     3181 tgggagtatg aatttaggcc ttggcgttct ggaatgcaac aaatcaatca atatatgttt
     3241 gttgatatta aaaaatcaga tttagatgct cttaatcaaa aaattttaat tctaaatgaa
     3301 gaaaaattat ccttgcaaaa aagtttagat tctcttccga taaaaaaaca aaatatggaa
     3361 ttaatttgtt tagagcaaga tattgaaatt aaagatttac agctttatca attgcgaaaa
     3421 aaaattgggt taaatcataa agataatgtt atttattcta attcagctaa atttataata
     3481 tataatcatc tgtcttataa attaggaagg attttaataa aatataattc tttttttggc
     3541 tacattaaat taccttttat attatgggct gtttttattg tccataaaac agttgatttt
     3601 aaatttaaat ctttaccttt aaaaaattat acagattatg atgaagctat aatagaaaaa
     3661 aatagcacaa catatcaact tggagaaaag tttataaaag cttgtaaatc ttggtataaa
     3721 ggaggattaa ttaaattttt cttccaaatt cgtaatatta ataaggttaa acaaaatgca
     3781 aggaaatatt aaaaatgcac ttgaagaatg gaattttgat ataattcaag atatctacaa
     3841 ggaggattta gctaagcaac agtctaaaga gtatatagat ttcttatatc agattggaaa
     3901 tgtagatgaa ttaattttat tatttaaaaa tacaccaca
//
LOCUS       DAPOLW010000138         3752 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.138, whole genome shotgun sequence.
ACCESSION   DAPOLW010000138 DAPOLW010000000
VERSION     DAPOLW010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3752
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.138"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..971
                     /locus_tag="ROE18_001575"
     CDS             <1..971
                     /locus_tag="ROE18_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDX3651738.1"
                     /translation="FLYLKELLILNNTRFENTLFLLSFLIITSILNLPLSIYESFIKD
                     KAHGFSNMTVKLFIKDTMKSLILTLIFGFLILYALLFCYDFFGTFWWIAAFIFAFCII
                     VIINLIYPTLIAPIFNKMEKLDDENLLKKISSLMKQCGFSANGVYVIDASKRDKRLNA
                     YFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFVHKDIIKALFNGAITMFLLFF
                     VFANLPEFVYLESHLEGVNGGVFALLFIFANIFSFLISPMLNALSRKNEFAADQHGAK
                     VTSKEDMKNALIALARENKAFIKTSKIYAFFYLSHPSISDRIKALS"
     gene            968..1783
                     /locus_tag="ROE18_001576"
     CDS             968..1783
                     /locus_tag="ROE18_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDX3651739.1"
                     /translation="MTIKNALMEAKSSLKGYENEAVFILCEYLKKDKAWLFLNQDIQI
                     DHEPYFKLIRHFKSGEPFEYIFEKVDFWGLEFKIKKGILIPRYDSEILLFQILNLCKK
                     NTFNGILEIGFGSGILSIVLAKELGLKITACDINPKALELALENAKLHKVDHLIDFKL
                     CNFKQIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDK
                     KVKFLACEFGYDQKEILEKILYQNNFIVDFFKDEQGYNRAFIAKFTNMRYDKK"
     gene            1796..2266
                     /locus_tag="ROE18_001577"
     CDS             1796..2266
                     /locus_tag="ROE18_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HDX3651740.1"
                     /translation="MKAVNLFLLASIIGVELILGIVVAPTIFFPQNLIGEGVLSHFQS
                     GLMMTQIFIKMGYLLIFVSVVNFLYEIYSLIKDEMKFQIKFSKFMLSLLILILSLIFV
                     FYFTNTIIELQNLGENATKTQEFISIHNASEVVIKIILIMQVFLYFLSFKIAKK"
     gene            2305..3054
                     /gene="flaC"
                     /locus_tag="ROE18_001578"
     CDS             2305..3054
                     /gene="flaC"
                     /locus_tag="ROE18_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HDX3651741.1"
                     /translation="MMISDATMMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATDGLSID
                     SQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNANYLKENAAAFVAAQSNMQLQSKIANLLQ"
     gene            3089..3721
                     /locus_tag="ROE18_001579"
     CDS             3089..3721
                     /locus_tag="ROE18_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HDX3651742.1"
                     /translation="MTLEQILEKTKNVRLVAASKYVDASIIEKLFDQGIVEFGENQVQ
                     ALAQKKENLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKENIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
BASE COUNT         1409 a          496 c          583 g         1264 t
ORIGIN      
        1 gatttttata ccttaaagaa ttacttatct taaacaacac tcgttttgaa aatactttat
       61 ttttattatc ttttttaata atcacaagta ttttaaatct acctttaagt atttatgaaa
      121 gttttatcaa agataaagcc catggttttt caaatatgac tgtaaaactt tttatcaaag
      181 atactatgaa aagtcttatt ttaactttaa tatttggatt tttaatcctt tatgctttgc
      241 ttttttgcta tgattttttt ggaacttttt ggtggattgc agcctttatt tttgcctttt
      301 gtattatagt gattataaat ctcatctacc ctaccttaat agcacctatt tttaataaaa
      361 tggaaaaact agacgatgaa aatttactga aaaaaatcag ctctttgatg aaacaatgtg
      421 ggtttagtgc aaatggggtt tatgttattg atgcaagcaa aagagataag cgtttaaatg
      481 cttattttgg tggacttttt aaaagcaaaa gagtggtgct ttttgataca ttattaaaag
      541 ccttaaatga aagagaactt ttagctgttt taggacacga gcttggacat tttgttcata
      601 aggatattat caaagcttta tttaacggcg ctataactat gtttttactt ttttttgttt
      661 ttgcaaattt acctgaattt gtttacttag aaagtcatct agaaggagta aatggcggtg
      721 tgttcgctct tttatttatc tttgcaaata tttttagctt tttaatctct cctatgctta
      781 atgccttaag tagaaaaaat gaatttgcag ccgatcaaca cggagctaaa gttacaagca
      841 aagaagatat gaaaaatgca ttgatagctc tagcaagaga aaataaagct tttatcaaaa
      901 caagtaaaat atatgcattt ttttatctca gtcatccaag tattagtgat agaatcaagg
      961 ctctttcttg actataaaaa atgctcttat ggaagctaaa tctagcttaa aaggttatga
     1021 aaatgaagca gtatttatac tctgtgaata tctaaaaaaa gataaagctt ggttattttt
     1081 aaaccaagat atacaaatag atcatgaacc ttattttaag cttataaggc attttaaatc
     1141 tggagaacct tttgaatata tatttgaaaa agtggatttt tggggcttag aatttaagat
     1201 aaaaaaaggc attctaatcc ctcgctacga tagtgaaatt ttactttttc aaattttaaa
     1261 tttatgcaaa aaaaatactt ttaatgggat tttagaaata ggatttggaa gcggaatttt
     1321 aagcattgtt ttagccaaag aacttgggtt aaaaatcaca gcctgtgata tcaatcccaa
     1381 agccttagaa ttagctttag agaatgccaa attacacaaa gtcgatcact tgattgactt
     1441 taaactttgt aattttaagc aaattaaaga aaattatgat tttatttttt caaatccacc
     1501 ttatattaaa aattcatatc ctatagatat ttgggtgcaa aaagaaccca aagaggcttt
     1561 atttggcgga gaaaaaggat atgaaattct agaagaaatc atacattttt cccttgataa
     1621 aaaagttaaa tttttagctt gcgaatttgg ctatgatcaa aaagaaattt tggaaaaaat
     1681 tttatatcaa aataatttca ttgttgattt tttcaaagat gaacaaggtt ataatcgtgc
     1741 ttttatagct aaatttacaa atatgcgtta tgataaaaaa taaaaggaga aactcttgaa
     1801 agctgttaat ttatttttac ttgcctccat cataggggtt gaactcatac taggaatagt
     1861 tgttgcacca acaatttttt ttcctcaaaa tcttatagga gaaggagtgt tgagccattt
     1921 tcaaagtggc ttaatgatga cgcaaatttt tattaagatg ggatatttgc tgatttttgt
     1981 ttcagtggtt aattttttat atgaaattta ttctcttata aaagatgaaa tgaaatttca
     2041 aataaaattt tcaaaattta tgctgagttt gcttattttg attttaagct taatatttgt
     2101 tttttatttt actaatacca taattgaact ccaaaactta ggcgaaaacg ctacaaaaac
     2161 tcaagaattt atcagtatcc ataatgcaag tgaagtggtg attaaaatca tcttgataat
     2221 gcaagttttt ttatatttct taagctttaa aatagcaaaa aaatgataaa atattaaata
     2281 aatccaaaag agaaggagta ggccatgatg atctctgatg caactatgat gcaacaaaat
     2341 tattatttaa ataatgcaca aaaagctagc gataaagctt tagaaaatat tgcagctgtt
     2401 cgcgcaataa gtggagttga tagtgctaat ttagctattg ctgattcttt aagatctcaa
     2461 tcaagcacta tagatcaagg tgtcgcaaat gcttatgatg ctataggggt tttacaaatt
     2521 gcagatgcta gccttaccaa tatctctcaa agcgcagata gacttaatga actttcagta
     2581 aaaatgaaca atgctgcact taatgattct caaaaaggaa tgctaagaac agaagcaaca
     2641 cgcatacaag aatccatcaa tgattctttt aataatgcaa cttataatgg aaaaaatgtc
     2701 tttcaaacta tgaattttgt agtaggtagc ggaactgaaa ctacaaattt aaatccatta
     2761 gcaacagatg gattaagcat agatagtcaa gatagtatta caaattttat ggatcaactt
     2821 ggaagtttaa gaagtgaaat aggctcaggt atcaatgcca tcacatcaaa tattaatgca
     2881 agtgttcaaa atagcatcaa ctcaaaagca gctgaaaata atttactaaa taatgacatg
     2941 gcaaaaaatg tcaatgattt taatgccaat tatctaaaag aaaatgctgc tgcttttgtt
     3001 gctgcgcaat ccaacatgca gcttcaaagc aaaattgcta atttattaca ataaaataag
     3061 ccctaaatag ggcttatttt ttatcaaaat gactttagag caaattttag aaaaaaccaa
     3121 aaacgttcgt cttgtagccg caagcaagta tgtcgatgca agtataattg aaaagctttt
     3181 tgatcaaggt atagtagaat ttggagaaaa tcaagtccaa gctctagcac aaaaaaaaga
     3241 aaatcttgat gaaaaaaaac tagacataaa gtggcatttt ataggaacgc tacaaagcaa
     3301 caaaatcaat ctcttaatca aacaaaaacc tatattatgg cactcttgca atggtattaa
     3361 aatagctaaa gctatggaca aaagacttga ttataaatta aatactttat tagaaatcaa
     3421 tagtgcaaat gaaaatagca aaagcggtct agatccaaat caagccgtag aagaatattt
     3481 acaaatacaa gaagaatgct ctaatttaaa tctttgtggc gtaatgagca taggatcaca
     3541 cagccaagat aaagaaaata ttataaaaag ctttgaaact acatttaaaa tttatgaaat
     3601 tcttcaaaaa catggggcta agatttgctc tatggggatg agtaatgatt ttgaaattgc
     3661 tataaaatgc ggatccaact tggtaagact cggaagcatt ttatttaaaa atcttaagta
     3721 aaacaatctt acttaagcat atttattaga aa
//
LOCUS       DAPOLW010000139         3721 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.139, whole genome shotgun sequence.
ACCESSION   DAPOLW010000139 DAPOLW010000000
VERSION     DAPOLW010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3721)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3721)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3721
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.139"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(84..1019)
                     /locus_tag="ROE18_001580"
     CDS             complement(84..1019)
                     /locus_tag="ROE18_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HDX3651743.1"
                     /translation="MKKIDLIVVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQ
                     FYKDGKRVDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKERNIEVEFGSEVESVK
                     NENGVFLVSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLANEKI
                     LVVGGGNSAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     INEVEDDNGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDENK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILSVL"
     gene            1090..2322
                     /locus_tag="ROE18_001581"
     CDS             1090..2322
                     /locus_tag="ROE18_001581"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HDX3651744.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKEKIILKLAQILRENFKIILEA
                     NKKDMANFTKSGAMKDRLLLDEKRILALCEGLEKIAYIEDPIGKISKGWKNYAGLSIQ
                     KMSIPLGLICVIYEARPSLSAEIAALMIKSSNACVFKGGSEAKFTNKAIFTLVNKALK
                     EFDLQDCFAMFTQRDEILQILAFDDLIDVIIPRGSSNMIQEIANNTKIPLIKQNKGLC
                     HAFVDQSANLDMALKIILNAKCQRVSVCNALETLLIHEKIAKNFISLLIPEFEKFKVK
                     IHAHENALVYFNNSNLEIFKANENTFDTEWLDFALSVKLVKDCDEAIEHINKHSSLHS
                     ETIISNDASNIAKFQRLINSSCIYANASTRFSDGGEFGFGGEVGISTSKLHARGPMGI
                     EDICTYKYIINGEGQIRE"
     gene            2319..3404
                     /locus_tag="ROE18_001582"
     CDS             2319..3404
                     /locus_tag="ROE18_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HDX3651745.1"
                     /translation="MNKIEILKQHFKEIAKLNSSEQVWQMPFFAALGVGIVLGLSVFF
                     GKLNYGLIAMIGALSFLYVPNTPLYHRMAVMMCCSFGIVSSFFLGILTHFLPAIFAFI
                     PIGIMAMGSSILIRYYNIGAPGYFFFVFSCILGAYSPFEAKDFIFLVGLVFLGAMVAN
                     LMALLYSIVVIYGFKNALPSEIPPREYIGFDAVFVDSLIMGSFVAFSIFIGTFLELER
                     SYWIAISCTAIMQGVTLNSIWIKQIQRIIGTALGVCFAWWLLSKQFHDIELILLMMSL
                     FFIGQFLVNRNYALAMIFFTPYATYLSEAANFMSENADKLILARLIDVVIGSILGLLG
                     GFVIYKPYLRVHFERIAKYIFRIKQKA"
     gene            complement(3401..>3721)
                     /locus_tag="ROE18_001583"
     CDS             complement(3401..>3721)
                     /locus_tag="ROE18_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HDX3651746.1"
                     /translation="NANLTNLEDLICLKNSRIFFKISGFYRAKIDYANNEQAVKFAKK
                     IYEILKEHFPLSNFVFGSDWPHTNFEANINFSSALVAFNEVVVSKKEQEQILGDNACA
                     LFGF"
BASE COUNT         1210 a          580 c          565 g         1366 t
ORIGIN      
        1 ataagtttat taatatttat tttattttgc atatgaattt tctagattaa actaaaataa
       61 aaatttagcc caaaggctaa attttaaagc acagaaagaa ttttcacagc gtcatttaac
      121 cctgtaacta tacttgctcc atttttagta gcaatatctc ctgctacaaa gatgccttta
      181 acattgcttt gtttgttttc atccattaaa ggcacgcctt tatcatcaac attaatccca
      241 catttttgta aaaaatcaag tggagtagaa ccaccaatag cataaatgat tctatcataa
      301 atatcgcttg taccatcggt aaaatttact ttagctttgc cgttatcatc ttctacttca
      361 ttaatgtcaa ttcctaattt taactctacc ttacccgaat ttccagcttc gtgaatatct
      421 ttaagattta tatcatttaa tcttgtaaat tcttttttac gataacaaag gctaacttga
      481 tttgaatttg ccaaatccac agcgtattct gctgctgaat ttccgccacc tacaacaaga
      541 attttttcat ttgctaaaac tgaattggca ttaaaattaa tgatttttgt taaagtcata
      601 ggaagtttgt aatcaggttt attaggttta cccattctac ctatagcaac aataatgttt
      661 ttacactcat aaacaccttt agctgtactt actaaaaaaa ctccattttc atttttaacg
      721 ctctcaactt cagaaccaaa ttcaacttct atattgcgct cttttaaagc gttttgaaaa
      781 gtttctatag tgctttcttt ggtgccatct tcaaaaggaa catgtccgtg attggttcct
      841 tcgcatccct tataagcttt atctactctt ttgccatcct tataaaattg cattaaagtt
      901 tgacaaatgt tatttgattt ttctagtatc aaaacttctt tgtttttaag cttggcttca
      961 actgcacagc ctatccctgt tggacctgca cctactacaa ttaaatctat ttttttcatt
     1021 tatatttacc tttcaattct aaattttttt gtataattta tcaagttttt tgtaaataaa
     1081 ggattaaaaa tgcgaaattt gcttgaaaat attaagaaaa attctcaaaa actacttaac
     1141 ttaacaccca aagataaaga aaaaattatt ctaaaattag ctcaaatttt aagagaaaat
     1201 ttcaaaatta tcctagaagc aaataaaaaa gatatggcaa atttcacaaa aagcggagca
     1261 atgaaagata ggcttttgct agatgaaaaa cgtattttag ctctttgcga aggcctagaa
     1321 aaaatcgctt acatcgaaga tcctataggc aaaatttcta aaggctggaa aaattatgcg
     1381 ggtttgagca tacaaaagat gagcattcct ttaggactca tttgtgttat ttatgaagca
     1441 aggcctagtc ttagcgctga aatcgcagct ttaatgataa aaagttccaa tgcttgtgta
     1501 tttaaaggcg gaagtgaagc aaaatttaca aataaagcca tatttactct tgttaataaa
     1561 gcacttaagg aatttgattt gcaagattgt tttgctatgt ttacccaaag agatgaaatc
     1621 ttgcaaattc tagcctttga tgatttaatc gatgtgatca tacctcgcgg aagttcaaat
     1681 atgatacaag aaattgcaaa caataccaaa attcctctca ttaagcaaaa taaaggcttg
     1741 tgtcatgctt ttgtagatca aagtgctaac ttagatatgg ctttaaaaat aatccttaat
     1801 gcaaagtgtc aaagagtaag tgtttgtaac gctttagaaa cgcttttaat ccatgaaaaa
     1861 attgctaaaa attttataag tcttttaata cctgaatttg aaaaatttaa ggtaaaaatt
     1921 cacgcccatg aaaatgcttt ggtttatttt aataactcaa atttagaaat ttttaaagca
     1981 aatgaaaata cctttgatac agaatggctt gattttgctt taagtgtaaa attagtaaaa
     2041 gattgcgatg aagctataga gcatatcaat aaacacagct ccttgcactc tgaaaccatt
     2101 atctcaaatg atgcttcaaa tatcgctaaa tttcaacgcc ttataaactc atcttgtatt
     2161 tatgctaatg cttcaacgcg ttttagcgat ggaggagaat ttggctttgg tggagaagtt
     2221 ggaatttcaa ccagcaaatt gcatgcaaga ggtcctatgg ggattgaaga tatttgcact
     2281 tataaatata taatcaatgg ggaaggacaa attcgagagt gaataaaata gaaatactaa
     2341 agcaacactt taaagaaatt gctaaattaa attcaagcga acaagtttgg caaatgcctt
     2401 tttttgcggc tttaggcgtg ggtatagttt tagggcttag tgtatttttt ggaaaattaa
     2461 actatggact cattgccatg ataggagctt tgtctttttt atatgttcca aacactcctt
     2521 tatatcatag aatggctgtt atgatgtgct gttcttttgg catagtttct agttttttct
     2581 taggaatttt aactcatttt ttgcctgcaa tttttgcctt catccctata ggaattatgg
     2641 ccatgggaag ttctatttta attagatact ataacattgg tgcacctgga tattttttct
     2701 ttgtattttc ttgtatttta ggagcttatt ctccttttga agctaaggat tttatctttt
     2761 tagtaggtct tgtttttctt ggagcaatgg tagctaattt aatggctttg ttatattcta
     2821 tcgttgtgat ttatggattt aaaaatgctt tacctagcga aattccacct agagaataca
     2881 taggttttga tgcagttttt gtggattctt tgatcatggg ttcttttgtg gctttttcta
     2941 tatttatagg aactttttta gaacttgaaa gaagttattg gatagccatt tcttgcacag
     3001 ctattatgca aggtgtaact ttaaattcta tatggattaa acaaattcaa cgcatcatag
     3061 gaacggcctt aggagtatgt tttgcatggt ggcttttatc taaacaattt cacgatatag
     3121 agcttatttt acttatgatg tctttgtttt ttataggaca atttttagtc aatcgaaact
     3181 atgctttagc tatgattttc tttactcctt atgctactta tctttcggaa gcagctaatt
     3241 ttatgagtga aaatgcagat aaattaatac tcgctcgttt aattgatgtt gtaataggaa
     3301 gcattttagg gcttttaggt ggttttgtga tttacaaacc ttatctaaga gtgcattttg
     3361 aacgcattgc aaaatacatc tttaggataa aacaaaaagc ttaaaagcca aataaagcac
     3421 aagcattatc ccctaaaatt tgctcttgtt cttttttaga tacgacaact tcattaaaag
     3481 ccactagagc cgatgaaaaa ttaatatttg cttcaaaatt tgtatgtggc caatcgcttc
     3541 caaaaacaaa attgctaagt ggaaaatgtt cttttaaaat ttcatatatt ttctttgcaa
     3601 attttacagc ttgttcatta ttagcatagt ctatttttgc tctataaaaa ccgctaattt
     3661 taaaaaatat tctagagttt tttaagcaaa ttaaatcctc taaatttgtt aagtttgcat
     3721 t
//
LOCUS       DAPOLW010000140         3635 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.140, whole genome shotgun sequence.
ACCESSION   DAPOLW010000140 DAPOLW010000000
VERSION     DAPOLW010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3635)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3635)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3635
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.140"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(11..940)
                     /locus_tag="ROE18_001584"
     CDS             complement(11..940)
                     /locus_tag="ROE18_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 domain-containing protein"
                     /protein_id="HDX3651747.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSHNADNSDSSFIPFIGAELYYGNLIDNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYVIGNREETDVDRYGFKISQLYESDFGKFTTSY
                     LFSKNKYDKDTIAQSSLKREGYYHEFELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAVGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQIVLTGIGYKF"
     gene            1094..2470
                     /locus_tag="ROE18_001585"
     CDS             1094..2470
                     /locus_tag="ROE18_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDX3651748.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYASIAGDISPKDFSLKAHQD
                     IFKAVIACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKILRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
     gene            2533..3135
                     /locus_tag="ROE18_001586"
     CDS             2533..3135
                     /locus_tag="ROE18_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651749.1"
                     /translation="MFYTFFVILKQGEKMLKQIAFGSIALTATGYGIKKLYEKLSKPE
                     RKFDTHAIVPSCKDVINTEEYKLKRELEIEQKKNQIQEFLCECMECYSGFSKYFNSKE
                     FLEFEQNFTSKNNHKIEFLLSSYKDQMIKVIDYAKKFKCLSAFLETQSEKNDLAVVKM
                     ISESMERKTQRFYLQTKFQTFPQYIFPSVWSSPMWDKQWE"
     gene            3126..3332
                     /locus_tag="ROE18_001587"
     CDS             3126..3332
                     /locus_tag="ROE18_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651750.1"
                     /translation="MGIILGILSLIAGFVAIVLMCGLYFIAFMVFVGIAILIFLSMQP
                     YPYNIIFCAIYLITILALVLWRKT"
     gene            3411..3476
                     /locus_tag="ROE18_001588"
     CDS             3411..3476
                     /locus_tag="ROE18_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001862547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3944 domain-containing protein"
                     /protein_id="HDX3651751.1"
                     /translation="MAYRYDKDLEFLKELSSPELD"
BASE COUNT         1302 a          488 c          612 g         1233 t
ORIGIN      
        1 tttataattt ttagaattta tatcctatac cagttaggac aatttgatag gtttcatcat
       61 aaaatcctat atcgctattt cttttttcta tgccataatt tgcaaaacca taaagtccgt
      121 tataacccaa aaattgattt ttaacaactt ttaaattaag cttaactata ttaccatctt
      181 gttttttgtg aaagatagga tcagttccta ctgcttcata tttgctaaga tttaaatttg
      241 gagtgaagat gtaatcatta gcaaaagcca aatttgttcc tatgctaaaa ccatatcttg
      301 aatagctttg agcttttccg tctgcatcat tgtaatcata atttaaccct aggtttaata
      361 agctataatt atagtttaat tcaaattcgt gataataccc ctcccttttt aaagagcttt
      421 gtgcgatagt gtctttatca tatttgtttt tgctaaataa atatgaagtg gtaaatttcc
      481 caaaatcact ttcataaagt tgagagattt taaaaccata tctatcaaca tcagtttctt
      541 ctctatttcc tattacataa ggatttgcat aagctttttc tcttaaagag gaaattacag
      601 aaaaagaagt gctaaaacgc tctaaataag ctctttcgta gcctaaagct ataccgctga
      661 tatctcttcc attgtagttt ttaataaaaa ttctatcatt atctataaga ttaccatagt
      721 aaagttctgc accgataaaa ggaatgaaag aggagtctga attatcagca ttgtgactgc
      781 ttagataatc actgtttgcc aaggttgaaa tattactttt aatatccctt gcacccacac
      841 ctatgcttaa atttccacta aaaccttctt gaaattctac agccgtagct gattgggtta
      901 aaatggaggc taaaacacag gaaaataaat attttttcaa atgttctcct tgaaatgttt
      961 gttgtttgta atgaaattac atttataatt gtaactaata ttacattaaa tatttataaa
     1021 aaaattaagt tttataattt aagttttttt agatagaatt tttagaatta atttatattt
     1081 ataaggaaat ttagtgcagc aagagtatta tgacttggat ttagaacgag ctattttaag
     1141 cagttgtatc atgagtgaag aagcttatgc tagtatagca ggtgatatta gcccaaaaga
     1201 ttttagtctt aaagctcacc aagatatttt taaagccgtt atagcttgta gtaataacaa
     1261 agagcccatt tctgtaagtt ttttaagaaa acataaaaaa atagatgagc aaattttagc
     1321 agaaattctt gccactcctt ctatgataga tttgcctgct tatgtaaatg aacttcacga
     1381 aaagtccgta aaaagacaac tcttgagttt tgcacatctt ttgccaactc gtatcaatga
     1441 agatcgtgct gtaagtgaaa tcgcagatga aattggtaaa gaaattttta gcattacaaa
     1501 tcgtgtgaat tctagagata ttaaagatgt tgatatggta atatcagaac tttttgaaga
     1561 atttaaaaag caaaaaactt tagaaaataa aggtattata gggcttgata caggttttga
     1621 aggtctaaat aaaatgacaa aaggttttaa agggggtgaa cttataataa tcgctgcgcg
     1681 cccaggtatg ggaaagacaa ctctttgttt aaatttcatt gacaagattt taagacaaaa
     1741 aaaaggcgtg gctttgtttt ctcttgaaat gcctgcaact caaatcatgc aaagaatgct
     1801 atcttccaaa acttccattc ctttgcaaaa aattttaact gcagatttaa atgatgatga
     1861 atgggagcgt ttaggagatg cttgtaatga ttatagtcaa aagaaattat atatttacga
     1921 tagtggttat gcaactattg ctgatgtaag ggctatttta aggcgtttaa aatctcaaga
     1981 tgaaagtata ggactttgtg tgattgacta tatagggctt atgatgagta attcaaattt
     2041 taatgataga catttgcaag ttagtgaaat ttcaagagga cttaagcttt tggctaggga
     2101 gcttgatatg cctattatcg cactttcaca acttaatcgt ggcttagagc aaagggcaaa
     2161 taagcgtcct ttgatgagtg atttgcgaga aagtggagct atagagcaag atgcggatgc
     2221 tattttgttt gtatatcgcg atgaggttta tagagaacaa gaagaaaaag aaagagagaa
     2281 taaagctaaa gctgaaggca aagcttatca aagacttttt ataccaaatc ctatgcaaga
     2341 aaatgctgaa attattgttg gaaaaaatag aaatgggcct gttggaacta tagaagttgt
     2401 atttttaaaa gaaaaatctt gttttgtaga taaacctata ggctatgaaa ctactgaatt
     2461 tacaggctag ctttaataaa ataagttttt aatattttaa agttattttt tacgacacaa
     2521 cctgtcgcaa gggtgtttta tactttcttt gttattttaa aacaaggaga gaaaatgtta
     2581 aaacaaatcg catttggtag tatagctctt acagctacag gatatggtat aaaaaaatta
     2641 tacgaaaaat tatccaagcc agaaagaaaa tttgatacac atgctattgt tccaagctgt
     2701 aaggatgtaa tcaataccga agaatacaaa ctcaaaagag agcttgaaat cgaacaaaag
     2761 aaaaatcaaa ttcaagaatt tctttgcgaa tgtatggagt gttatagcgg cttttcaaaa
     2821 tattttaatt ctaaggaatt tttagaattt gagcaaaatt ttacctctaa aaataatcac
     2881 aaaatagaat ttcttttgtc gtcttataaa gatcaaatga taaaagtgat cgactatgct
     2941 aaaaaattta aatgcttgag tgcttttttg gaaacacaaa gcgaaaaaaa tgacttagcg
     3001 gttgtaaaaa tgataagtga aagtatggag agaaaaacac agagatttta tctgcaaaca
     3061 aaatttcaaa cttttcctca gtatattttt ccttctgtgt ggagttctcc tatgtgggat
     3121 aaacaatggg aataatactt ggaattttaa gccttatagc tggctttgtt gccatagtgt
     3181 tgatgtgtgg tttgtatttt atagcgttta tggtttttgt tggcatagcg atacttattt
     3241 ttctttctat gcaaccttat ccttataata taatattttg tgctatatat ttaatcacaa
     3301 ttttagcgct agtgctatgg cgtaaaactt aaaaatttca cttccccctt gactgggggg
     3361 ggggatttga taaaatacaa agttaaaaat tttaaaaaca aggagaaaat atggcctaca
     3421 gatatgataa agatttagaa ttcttaaaag aattaagcag tccagaactc gattagcttg
     3481 taaaaatttt aacccatgat aaagacggga aagttcgttt tactgaagag ttaaccaata
     3541 atgatcttta taaaaaacat tatccagatc ataaagaata tatcgaactc attttagaag
     3601 aatttcaaaa atttggagga aatagtattc ttaat
//
LOCUS       DAPOLW010000141         3612 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.141, whole genome shotgun sequence.
ACCESSION   DAPOLW010000141 DAPOLW010000000
VERSION     DAPOLW010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3612)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3612)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3612
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.141"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            89..220
                     /locus_tag="ROE18_001589"
     CDS             89..220
                     /locus_tag="ROE18_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDX3651752.1"
                     /translation="MSMKKIILFLLCVGFAFACSEHSHTDFKDLNKTEYNSQLKDKI"
     gene            217..1221
                     /locus_tag="ROE18_001590"
     CDS             217..1221
                     /locus_tag="ROE18_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HDX3651753.1"
                     /translation="MKKIFFMFLTAVSFLGASELNIYSARHYNADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYEDLAKAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR
                     "
     gene            1221..2837
                     /locus_tag="ROE18_001591"
     CDS             1221..2837
                     /locus_tag="ROE18_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDX3651754.1"
                     /translation="MYKTLKYYKLGAILLALFLALPIFGIFAELFYILFQNFNTSDLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISMGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRIDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     ALFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALITALITTFLAYFLMFSSRIVKNHFFNLFILKISSLGYSIPAAALGISIIVLFV
                     FLDKFFHMSLLGNSLLVLVFAYIIRFLASAIYSLEGGYNKIHLNIDEASLNLRTSYFI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLFIVFLSLMVVVWMDKITRKDDVRN"
     gene            2821..>3612
                     /locus_tag="ROE18_001592"
     CDS             2821..>3612
                     /locus_tag="ROE18_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDX3651755.1"
                     /translation="MMLEIKNLSKNFGKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAMARGCKLLLLDEPFSNLDQNLKQDLRRE
                     LKKMIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEEKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAKILQKE"
BASE COUNT         1224 a          417 c          578 g         1393 t
ORIGIN      
        1 aaatatttat cagttataaa attattaagt tactttatat ttacttttta atattaatat
       61 ttcttatcaa aatatctaaa aggaattaat gtctatgaaa aaaataattt tatttttact
      121 atgcgttggc tttgcttttg cttgctctga acattctcat accgatttta aagatcttaa
      181 taaaaccgag tataattctc aattaaagga taaaatatga aaaaaatctt ctttatgttt
      241 ttaacagctg tttcattttt aggtgctagt gagcttaata tttactcagc aagacattat
      301 aatgctgatt ttgaaatcat aaaaaaattc gaagaaaaaa caggtattaa ggtcaatcat
      361 actcaagcca aagcttcaga acttattaaa agactttctc ttgaaggaag taattctcct
      421 gctgatattt tcatcacagc tgatatttca aatcttacag aagctaagaa tttaggactt
      481 ttatcccctg tttcatcaaa atatttagaa gaatttatac ccgctcattt aagagataag
      541 gataaagaat ggtttgcgat tacaaaaaga gcaagaatta ttgcttacaa caaaaacaca
      601 aatatcgata ttagcaaaat gaaaaattat gaagatttag caaaagctga atttaaagga
      661 gaaattgtta tgagaagtgc tacagctcct tatagcaaaa ctcttttagc atctattata
      721 gctaatgacg gaaataaaga ggctaaagca tgggctaaag gtgtgcttga aaatcttgcg
      781 acaaatccaa agggtgggga tagagatcaa gccagacaag tatttgcagg cgaagctaaa
      841 tttgcagtta tgaatactta ttatataggg cttttaaaga attctaaaaa tccaaaagat
      901 gtagaagtgg ggaattcttt gggtattatt tttcctaatc aagacaatag aggaacgcat
      961 attaacatta gcggtattgc tatgacaaaa tcaagtaaaa atcaagatgc ggctaaaaaa
     1021 tttatggaat ttatgttaag tcctgaaatt caaaaaattc ttactgatag taattatgaa
     1081 tttcctataa gaaatgatgt agaattaagc caaacggtaa aagattttgg aactttcaaa
     1141 gaagatcaaa tccctgtgag taagatagca gaaaatatta aagaagcggt taaaatttac
     1201 gatgaagtcg gttttagata atgtataaaa ccttaaaata ctataaactc ggggcaattt
     1261 tacttgccct ttttcttgct ttacctattt ttggtatttt tgctgaactt ttttatattt
     1321 tatttcaaaa ttttaataca agtgatttaa cccaattttc atctattaaa gaaaatttga
     1381 gtcatttttt tgattattta tttttaaaat tcatcaaaga tacttttata attagcatgg
     1441 gagtattgtg tttaagcttg attttgggtg tgagttctgc ttatttgatt gcaaattatg
     1501 atttttattt ctgtaaaatt ttagaaaaat tactcatttt acccttagcc atacctgctt
     1561 atattttagc ctttgtttat gtgggaatta tggattttca aggatttttt cacgaaaatt
     1621 ttggctttag gatagatttt ttcaatcatt atggtgttat ttttgttttg gctatttctt
     1681 tatatcctta tatttattta tttgctaaaa cagcttttaa aagtgaagct aaagaggctt
     1741 atgaagtagc taaaatcatg aaatattctg aatttagaat ttttacacgc gtggcacttt
     1801 tgagtgcaag acctgccatt ttttctggag ctttattggt tttaatggaa actttgagtg
     1861 attatggtgc aagtgcttat ttgggagtgg atactttttc ggctggaatt tttaaactct
     1921 ggtatgattt gaatgattct tattcttcta gtgttttatc gggtatttta atgctttttg
     1981 tatttttgat tatgtatgtg gattattatt ataaaaataa acatcattat agttttaatc
     2041 aaaatttagc tctttttatc aaaaaaagaa aattaaatcc tattaaacaa attctatcct
     2101 gtatttattg ttttatgatt gcttttgtag gttttatttt accttttatt tggctagttt
     2161 attgggggct aaaagatcat aagctttttg aatcgcaatt ttatattatc agttttcaaa
     2221 ctataatctt agctttaatc actgctttaa ttaccacttt tttagcttat tttttgatgt
     2281 ttagctctag gatagttaaa aatcattttt ttaatttatt tattttaaaa ataagttctt
     2341 tgggttattc tatacctgct gctgctttag ggattagcat tatagtgctt tttgtatttt
     2401 tggataaatt ttttcacatg agtttattgg gaaattcttt acttgttctt gtttttgctt
     2461 atataattcg ttttttagcg agtgcaattt attctttaga gggaggatat aataaaattc
     2521 atctaaacat tgatgaagca agtttaaatt taagaacgag ttattttatt ttatttttta
     2581 aaattcacac acctttaatg aaacattttt tatttttggc ttttattatt gtttttattg
     2641 atacgattaa agaacttcct ttaagtagaa ttttagcgcc ttttggcttt gaaactttaa
     2701 gtgttaaagc tttctggttt gcaagtgatg aaagaattta tgatgcagct ttgccttcct
     2761 tgtttatcgt ttttctttct ttaatggttg ttgtttggat ggataaaatc acaaggaaag
     2821 atgatgttag aaattaaaaa tttatctaaa aattttggaa aaatacaagc tttagaaaat
     2881 atcaatcttc atgtcaaaga aggagaattt ttaagcattt taggaggtag tggaagcgga
     2941 aaaagcacgc ttttaaggat tattgctaag cttgaacaag ctagttctta tgatttgttt
     3001 tcttgcaaag gtgaagtggc tttgatgttt caaaattatg ctttatttcc tcatttaaat
     3061 gttgagaaaa acatactttt tgcactttat gataaaaaag ataaaaatca aattttaaat
     3121 catttgctta aaacttttga aattgaagat ttaagatata aaaaaatcga tgaaatttca
     3181 ggaggacaag cgcaaagagt ggcttttgct agagctatgg caagaggatg taagcttttg
     3241 cttttagatg aacctttttc taatttggat caaaatttaa aacaggattt aagaagagaa
     3301 ttgaaaaaaa tgatagaaaa tcaaggcatt acggctatta tggtaactca tgatattgaa
     3361 gatgcttatt gtatgtctga tcaaatcgct tttttagaaa aaggaaaaat tttagctcat
     3421 gcaaatccta aagagcttta ttttaaacct gattttaaaa gtgcacaaat tttacctgat
     3481 ttaaatatca tagaagaaaa acttgattta gaagatgaat tttttgcttg gatagcttca
     3541 aaaaattata tttttggtta tgcagagctt aaaataggaa atcgctttga ggctaaaatt
     3601 ttacaaaaag aa
//
LOCUS       DAPOLW010000142         3595 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.142, whole genome shotgun sequence.
ACCESSION   DAPOLW010000142 DAPOLW010000000
VERSION     DAPOLW010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3595
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.142"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..3543)
                     /gene="dnaE"
                     /locus_tag="ROE18_001593"
     CDS             complement(<1..3543)
                     /gene="dnaE"
                     /locus_tag="ROE18_001593"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HDX3651756.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGIEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLELNLGNPTPPNFKFTREYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGLEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGVIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGAKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLY"
BASE COUNT         1134 a          729 c          426 g         1306 t
ORIGIN      
        1 ataaagcaag caagatcccg cactaataac ttttaaaaca agttttttat tatttttttc
       61 attaggatta tgtgcatttc tagcaatttc atgaatttca tagattaatt ctctattcaa
      121 tcttgtcaaa tctagctcta tgatattttt ttcaaattcc ttaggttctg cggtaaaatg
      181 attttcttct ttatttttaa aatctttttt tgctccaaat ttttttatag ctttaatctc
      241 gccatcttca agactttgca aatctttaat tgcttttaaa aaaaagctag gcttctcccc
      301 tccttcagct ttaaatccca atacaaaacc ataggcatta ttttttaaat tttcatcttt
      361 gatgatgttt tctatttctt ctacattgct ttcaaataca gtagcatcaa acgaagaata
      421 ataatccaaa atttcaattc taccataacg cttattattt ttactcatca tggatttgaa
      481 atcttcaatt ttacctatac ttaaaatttc tccattgttt tttaaacttt caaaatctaa
      541 acttttaaca taatctatgg cattaatttg ttcataaaat cgatctaaag gatggcctga
      601 aacataaatt cctaaaattt ctttttcata tcctaatttt tccatcactt caaattcttc
      661 atttttggga gtaaaattta cttgaacacc tgaagttaat tcctcttcac caaaaagaga
      721 acttgcagca ttttttctta cttcagccat tttacgcgat gcttcgctaa gattttccat
      781 attatcaaac aaagcttttc tagtaaaacc aaactcatca aaagcccctg ccttaataag
      841 actttctaat gttctacggt ttattttggt gggatctatc ttacctaaga aatcattaat
      901 atccttaaat tctccatctt gtcttgcttc aagtaaattt tcaactgcag gaatacccac
      961 actttttata gccccaagtc cgtatataat agcatccttg ccatcttgct ctaaagcact
     1021 aaattcacgg atcgctttgt taatcgatgg aggtaaaagt ttaatattca tttttttcat
     1081 ctcatcaata taaacagcaa ttttatccac attgttttct tcgcttgtta aaagcgctgc
     1141 cataaattca ctaggataat aagtttttaa ataagctgtt tgaaaagtaa tcaatgcata
     1201 agccgcagag tgagatttat taaaaccata tcctgcaaat tttacgataa gctcccataa
     1261 atcctcagct tttgctctat catatccttg tttttctgct ccatctgcaa aatcagtttt
     1321 aagctttttc atcttctcag gatctttttt acccatagca cgacgcacta catcagcacc
     1381 tcctaaagaa aagccaccta taatttgaac aatttgcata acctgttctt gataaacaat
     1441 aaccccataa gtaggctcta aaaccttttc taaactgtca aaaggatatt ctatactttt
     1501 taaaccatgc tttctgtcga taaaatcatc aagcattcct gattccatag ggcctggacg
     1561 ataaagcgca agaaccgcaa tgatatcttc aaaacgctct ggttttaagc gtgcatttaa
     1621 gctttgcata ccgcctgatt cgatttgaaa aattcccaaa gtatttccac tttgtatggt
     1681 tttataaact ttgctatcat ttacatctat agtttcccaa ataatgtctt tattgtaacg
     1741 ctttttaata agcttgatcg cattattgat tactgttaag gttttaagac ctaaaaagtc
     1801 aaattttatc aaatccacat cttctaaatg atctttagaa tactgcgtta ccaaatgtct
     1861 ttcatcattt ttactttgtc taaaaagcgg agttttcttc cataaacttt cattagaaat
     1921 tacaacacct gctgcgtgca tacccgcatt gcgatttaat ccttctaaag ctcttgcata
     1981 ctcccaaact tcaagacctt taggatgacg atcgataaat tctttgattt taggttcttt
     2041 ttcataagca gcatcaagag tgattttaag ctcttcaggc acaagtttag caagctcatc
     2101 agcatcttga atactcatat cacaaactct agccacatca cgaatcaccc ctttagccaa
     2161 aagtttacca aaggtaatca cctgtgcaac cttatccgct ccatatttat caatcacata
     2221 atcaatcact tcagcacgtc tgtcttgaca aaaatccaca tcaatatcag gcatgctcac
     2281 acgctcagga tttaaaaaac gctcaaaaag tagactataa ggaataggat ctaaatccgt
     2341 aatccttaaa caataagaaa ccaaacttcc tgcagctgat cctcttccag ggcctactgg
     2401 aataccttta tccttagcca ctttaataaa atcatgaaca ataagcatat aacctgaaaa
     2461 tttcatattt ttaatgatgt taatttctac ttcaagtctt tgtttgtatt cttcatgctt
     2521 actttcatcg ataaatttta atctctcttc aagtcccttt ttgcaaagtt cttcaaaaac
     2581 catgtcatca ttatcaaagc taaattcttt tgtttcttca ggtaagataa tattatgatc
     2641 tttagcatat tctcttgtaa atttaaaatt cggtggagtg ggattgccaa gattaagctc
     2701 taaattacat ttttgtgcga tttcttgtgt attttctata gcttctggaa tatctgcaaa
     2761 aagctcactc atctgctcag gacttttaac ataaaattca tgcacactat gacgcattct
     2821 atcaggatcg ttaagttttt ttcccatggc tatacacata aaaacctcat gggcagccgc
     2881 tctttcttta aaagtataat gcgtatcatt tgtagcaatg atttttatat ttaattcttt
     2941 agaaagtctg ataatatcat catctatcat tctttgatcg cctataccat gacgcatgat
     3001 ttcaaaataa aaatcatctt taaaaacttt tttataccat aatgccgctt cttttgctgc
     3061 ttcatagcct tttgcaccaa aacgcacatt tctttcacta taagtattta agtgccaatt
     3121 tacttcacct tgcaagcaag cagaagagca aataagacct tcgctataat cttccaaaag
     3181 ctttttattg atacgcggat aataatacaa acctttaata taactttgag aacttaaata
     3241 cattaaattt tgatatccaa tctcattttt tgcatacaaa caaaggtgaa aacgctgacg
     3301 agaactttta tcatctaact catcatgatt atgcaaatac gcttctatac caatgatagg
     3361 ttttaaacct tgtgctttca ttgtttgata aaaatcaatt gccccaaaca tatttccatg
     3421 atctgtcata gccacacttg tagcaccctg ctcttttaaa gtcaaagcta attctttaag
     3481 cttattggct ccatcaagca aagaatattc tgtatgtaaa tgcaagtgtg taaattgact
     3541 cattttcttc ctttagtttt ttaaggctta ttttaatttt gataaaaatt ataaa
//
LOCUS       DAPOLW010000143         3594 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.143, whole genome shotgun sequence.
ACCESSION   DAPOLW010000143 DAPOLW010000000
VERSION     DAPOLW010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3594)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3594)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3594
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.143"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            63..842
                     /locus_tag="ROE18_001594"
     CDS             63..842
                     /locus_tag="ROE18_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlgG"
                     /protein_id="HDX3651757.1"
                     /translation="MSIFSINDNSNYNSILSQAKANKESKENSKISFANAFLKQNASK
                     LNEIQNANSQTLARSEALNSTNTTNTSNNTNFSISSKTSSPNYDISSEFKNSIYTLKY
                     KQADLNTNTAYGYSVDKDGYMGSDFNKAAGLPEDFKIHKSTLDEIKKAAENDPVVSST
                     KEYLGVSSYYSNIDIANTIKQYYNLFSNALGQSFPNDKTSFSEADINSMPSGYGVSGT
                     QWMDFNEPSNRMNITGLKDFSNSLISNVYKTPEQAKEADEI"
     gene            858..1382
                     /locus_tag="ROE18_001595"
     CDS             858..1382
                     /locus_tag="ROE18_001595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651758.1"
                     /translation="MIKGLSSETLGLSLEEIKNVSRGEDWQFNPDMSVYPQNEDGSYS
                     KETLFMSFLKAQGGQPVESLKTTLNPKLEAYKRAMAKESFSGPAINIDSIMTGKSDFK
                     SFFRYWAERGIEGDLYMYENNISKESAMGNWALDAEIKQALANGWKAKPSTIDSYADS
                     IMDRLNNLLGQTRV"
     gene            1477..2247
                     /locus_tag="ROE18_001596"
     CDS             1477..2247
                     /locus_tag="ROE18_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HDX3651759.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDKRKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDTTRAILAPFQENPEFWGIAVRKGDEALKDK
                     LDNFIDESRKNGFLDFLGNKYLKDIKEVFKQNNITFFL"
     gene            2340..2567
                     /locus_tag="ROE18_001597"
     CDS             2340..2567
                     /locus_tag="ROE18_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDX3651760.1"
                     /translation="MKKVAFFLLFLFLSCTVLNAAREYCKYAYQEDRAIPLILNYGIR
                     LGVVGAGVANAPAPGGSTYNSKIDMMAARCH"
     gene            2593..2817
                     /locus_tag="ROE18_001598"
     CDS             2593..2817
                     /locus_tag="ROE18_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651761.1"
                     /translation="MLEFIFTLILDFTFYSIKTLEKVFLGRTALVILFVVFIALFCVK
                     GLFLYILLALELFLLLYLFLGILFLRFYKS"
     gene            complement(2814..3548)
                     /gene="fliP"
                     /locus_tag="ROE18_001599"
     CDS             complement(2814..3548)
                     /gene="fliP"
                     /locus_tag="ROE18_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HDX3651762.1"
                     /translation="MKKILLFLLLSMSLFAAEATIPTVNLSLSAPNTPNQLVTTLNIV
                     IVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
BASE COUNT         1299 a          453 c          625 g         1217 t
ORIGIN      
        1 ttgcttatat tattttaata tatttaggtt gaaggcagaa aaatctaaat caaggaatta
       61 atatgagtat ctttagtatc aatgataatt caaactataa ttctatactt tcacaagcaa
      121 aagctaataa agaaagtaaa gaaaattcta aaataagttt tgctaatgct tttttaaaac
      181 aaaatgctag taagttaaat gaaattcaaa atgcaaattc acaaactcta gcaagaagtg
      241 aagcattaaa ttctactaat acaacaaata ctagcaataa tactaatttt agtataagta
      301 gtaagacaag ttctcctaat tatgatatat ctagtgaatt taaaaactct atttatactc
      361 taaaatacaa acaagctgat ttaaacacta atacagccta tggttatagt gtagataaag
      421 atggttatat gggaagtgat tttaataaag ctgcgggact tcctgaagat tttaagatac
      481 ataaatctac tttggatgag attaaaaaag ctgccgaaaa tgatcctgtt gtttcaagta
      541 caaaagaata cttaggcgta agcagttatt attctaatat agatatagca aatactataa
      601 aacaatatta taatcttttt tctaatgctc taggtcaaag ctttccaaat gataaaacaa
      661 gttttagtga agcagatata aattctatgc ctagtggtta tggtgtaagt ggaacgcaat
      721 ggatggactt taatgagcca agcaatagaa tgaatattac aggtttaaaa gatttttcaa
      781 attctttaat ttcaaatgtt tataaaaccc ctgaacaagc aaaagaagct gatgaaattt
      841 gacttgattc aggatgtatg atcaaaggat tatcatctga gactttaggt ttatccttag
      901 aagaaatcaa aaatgtttct agaggtgaag attggcaatt taatcctgat atgtcagttt
      961 atccacaaaa tgaagatgga agctattcta aagaaacttt gtttatgagt tttttaaaag
     1021 ctcaaggtgg acaacctgtt gagagtctaa aaaccacact taatccaaaa ttagaagctt
     1081 acaagagggc tatggctaaa gagagtttta gtggtcctgc aattaacatt gatagtatta
     1141 tgacaggtaa aagtgacttt aaaagctttt ttagatactg ggcagagcgt ggcatagaag
     1201 gtgatttata tatgtatgaa aataacattt ctaaagaatc tgctatgggt aattgggctt
     1261 tagacgctga gattaaacaa gctcttgcta atggttggaa agcaaaacct agcactattg
     1321 attcctacgc tgattctata atggatagat taaataatct tttgggacaa actagggttt
     1381 aggaagtatt aattttttaa gtttgaaata aattgctaat aacaaaataa gataaaacta
     1441 gtataatttt tttacaaaaa aaattgaaag gaaattatga aaaaaattat tttgattttt
     1501 atctcttttt ttgctttaaa tttgagtgca aaagatttgg ttgtaggaat ggagcttgga
     1561 tatccgcctt ttgaaatgag cgataaaaca ggcaaagcaa gtggaattag cgtggatttt
     1621 ttagaagctt ttgcaaagaa aaacggctat aaacttgtag taaaaaatat cgcttgggat
     1681 ggtttaatac ctgctttaaa aacagccaag atagatctta ttatgtcctc tatgacaatt
     1741 accgataaga gaaagaaagt ggtggatttt agcattcctt atgctaaggc aaatttggct
     1801 attttaactc ctttgaactc tgatattaca aatatcaaag atttagataa aaagggcaaa
     1861 gttttggctt taaagcgtgg ttctacaggg catttatatg cggttaaaaa tttaaaaaat
     1921 gcaactatta atttatttga taaagaaaat gctgctattt tggaagtgat tcaaggcaag
     1981 gctgatggat ttttttatga tcaacttacg atttatcgga cttggcaaaa gcatcaagat
     2041 acaaccagag ccattttagc gccttttcaa gaaaatcctg agttttgggg tatagctgta
     2101 agaaaaggtg atgaagcttt aaaggataag cttgataatt tcattgatga gagtaggaaa
     2161 aatggctttt tagatttttt gggcaataag tatttaaaag acattaaaga agtttttaag
     2221 caaaataata tcactttttt cttgtaggct tttaataaaa tattgataat taatattaat
     2281 tttatgaatt ttgatataca atatcattat ctaaatttta aataaaagga tttaagataa
     2341 tgaaaaaagt tgcatttttt ttgttatttt tgtttttatc ttgcactgta ctaaacgcag
     2401 ctagggagta ttgcaaatat gcttatcaag aagatagagc tataccttta attttaaatt
     2461 atggaataag attgggggta gtaggtgctg gggttgcgaa tgcacctgca ccgggcggaa
     2521 gtacttacaa ttcaaaaatt gacatgatgg ctgcaagatg ccactaagct tagtttttgg
     2581 gtgtatttta caatgctaga atttattttt actcttattt tagattttac tttttattct
     2641 atcaagaccc tagaaaaagt ctttctaggg cgaacagcct tagtaattct ttttgttgtt
     2701 tttatagctc ttttttgcgt taaaggcttg tttttgtata tacttttagc tttagaatta
     2761 tttttgcttt tgtatctttt tcttggaatt ttgtttttaa gattttataa atcttaggtt
     2821 acaaagcttt ccacaagcct ttgcactagc aaattccatc catccactaa tacaaaaatt
     2881 aagagtttaa aaggtaaaga gatcatagta ggaggtagca tcatcatacc catagccatt
     2941 aaaactgagc ttacaaccat atctatgact aaaaagggta ggtagattaa aaaccctatt
     3001 tcaaaagcgg ttttaagctc tgaaatcata aaagcaggaa ctaaaaccgt aaggggaaca
     3061 tcatctatgg ttttgggatt gggtagattg cgtatgcgat aaaaaagggc taaatctttt
     3121 tcgcgagtat ttttaagcat aaaatcttta aaaggctttg ctccttttat aaaagcctct
     3181 tcatagccta ttttttctgc taaataaggt tttatacctt cattatagga ttttgtagct
     3241 acaggttcca tgataaaaaa agttaaaatt aaagccaagg ttactaaaat ggtattaggt
     3301 ggcatacttt gcgtccccat agcttgtcgc aaaaatgaaa atactacaat aagacgcaag
     3361 aaagaagtca taacaaaaac tatacttgga gcgagcgcaa gtatggttaa aacaatcact
     3421 atatttaaag tagtaacaag ctgattaggt gtattgggtg cacttaagct taaatttact
     3481 gtagggatag ttgcttcagc agcaaataag ctcatgctta aaagtaaaaa taataatatt
     3541 tttttcaaaa tttaaaaacc tttttttgtt ttttactaaa gaaatttaaa tttt
//
LOCUS       DAPOLW010000144         3458 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.144, whole genome shotgun sequence.
ACCESSION   DAPOLW010000144 DAPOLW010000000
VERSION     DAPOLW010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3458)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3458)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3458
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.144"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..482)
                     /gene="pgsA"
                     /locus_tag="ROE18_001600"
     CDS             complement(<1..482)
                     /gene="pgsA"
                     /locus_tag="ROE18_001600"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HDX3651763.1"
                     /translation="MNLPNILAIFRMVLAPLLFFLLIHHFENIHQSWINYFAALTFSL
                     AALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAFLGLLLTGKANEWVIYIILVR
                     EFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFLIMEWIGGEILLYIALILTLY
                     S"
     gene            complement(607..1212)
                     /locus_tag="ROE18_001601"
     CDS             complement(607..1212)
                     /locus_tag="ROE18_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDX3651764.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLKKEDLNSILEIARLSPSSLGLE
                     PWKFIVVQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSETE
                     IQKRLDAYMPFLKSLNQEEKISYAREQAHIALASILYSANALNIASCTIGGFDKQKLN
                     SYLSLDIQKERSSLVVALGYCNDEKNPQKNRFSFDEVVKFI"
     gene            complement(1212..1831)
                     /locus_tag="ROE18_001602"
                     /pseudo
     CDS             complement(1212..1831)
                     /locus_tag="ROE18_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
     gene            complement(1895..2320)
                     /locus_tag="ROE18_001603"
     CDS             complement(1895..2320)
                     /locus_tag="ROE18_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDX3651765.1"
                     /translation="MKEIKLKEDLEKIYPLIKQLRNNLSLKDFLDKFQLATQTQHYKL
                     FAYENEGSYKAACGVMPFNVLYHNHCLYICDFVVDETLRGKGIGQAFLKKIQIWVKNQ
                     GYEELELSSSFFRTQAHEFYIQKMGFEKSGFVFKKNIKL"
     gene            complement(2332..3420)
                     /locus_tag="ROE18_001604"
     CDS             complement(2332..3420)
                     /locus_tag="ROE18_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HDX3651766.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDK
                     DLPFLLENLLNQYDFITLFTSPLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPDLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
                     SIKSTKFLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIISYSNRIKHEWLGISESILENQGEYSE
                     RCVYFMLKGIFKTAKPDFALAISGVTGEQDEGLVKSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
BASE COUNT         1194 a          544 c          446 g         1274 t
ORIGIN      
        1 gaataaagag ttaaaatcaa agctatgtaa agtagaattt caccgcctat ccactccatg
       61 attaaaaatc ctatcgcagt catttgaaaa gcggttttaa gtttgcctgc aaaagaagca
      121 ttgacattta aattttcgct aatcattaca actctaaaac ctgtgataaa aaattccctt
      181 actaatataa tataaattac ccattcatta gcttttcctg taagtaaaag ccctaaaaaa
      241 gctgctaaaa caagcatttt atcggctaat ggatctaaga ttccaccaag ttttgtagtt
      301 tgtttccaag ttcttgcgat gtatccatca aaaaaatcac ttaaagctgc taatgaaaaa
      361 gttaaagcag caaaatagtt aatccaactt tgatgaatat tttcaaaatg atgaattaat
      421 aaaaaaaata gcaaaggcgc taaaaccatt ctaaaaatcg ccaagatatt gggtaaattc
      481 ataacaagcc ttgtgaaatt aaatgtaaaa ttataatcaa aattgtataa aatttaagca
      541 aagacttagt aaaaatacaa aaaagaatca gtttattttt atttaaattt tgcttttaag
      601 caaaatttaa ataaatttta caacttcatc aaaactaaaa cgattttttt gaggattttt
      661 ttcatcgttg caatatccta aagccaccac caaacttgat ctttcttttt gaatatcaag
      721 tgataaataa gaattaagct tttgtttatc aaaaccacct atagtgcagc ttgctatatt
      781 taaagcatta gcactgtaaa gtatgctagc tagagctata tgagcttgtt ctcttgcata
      841 agatattttt tcttcttgat ttagagattt taaaaaaggc atataagcat ctaagcgttt
      901 ttgaatttct gtttcactca tatctctttt tctaagtttt tcttcaaaat aatccaaaaa
      961 atcaagtctt gaaatgatga taattaacgc agcgcaatct tttacatgtt tttgctggtt
     1021 gcaaatttta gaaagttctt cttttctttt ctcatcttgc actactataa atttccaagg
     1081 ttctagtcct agggagcttg ggcttaatct tgctatttct aaaatagaat ttaaatcctc
     1141 ttttttgagt ttttcatttt taaaatttct acaagaatat cttgtgctaa aaatttcaag
     1201 ttcttttttc attatttttc cttgtaaaat tcgacgactt cattaaaatt taagcgttga
     1261 gtagaatatt ttggttcatg ggctttatat cctaaggata aaattacagc agtttcaaaa
     1321 ggataagtta aattaagaaa atcatcaact ttaacttttt caaagccacc tatcatacaa
     1381 gaatcaatac ctaagctcat tgcagctagt gacatttgca tcatagcaag atagcattga
     1441 agttgtgcat aatgatagag ttcattatca ttcattgcat tggttttatg agtataaatt
     1501 tctaaaattt tttgaaaatt ttcttcgcta gaacctgaga aacgacgcac ttgtttttgt
     1561 gcaaattcat ctttgctttg aagatctttt cttgctagaa aaataatatt atgactcgca
     1621 cttgctacgt tttgttgatt gtaacataga gttgagagct taagattatg ttctttttgt
     1681 tctaatacta caaatttcca aggctcaaat ccatgcgagc ttggggctaa gactccgctt
     1741 tctaagataa aatgcaaatc cttttcattg attttttatc attaaaaagt ttacaagctc
     1801 tgcgttttga aattagttct ttaaaattca ttttattcct taaaatcaaa aataataata
     1861 ttaattataa aatgcaaagc ttaatcaaaa aatattatag tttgatattt ttcttaaaaa
     1921 caaaaccaga tttttcaaaa cccatttttt ggatataaaa ttcatgagct tgtgttctaa
     1981 aaaaacttga acttagttct aattcttcat atccttgatt ttttacccaa atttggattt
     2041 ttttcaaaaa agcttgacct ataccttttc ctcttaaagt ttcatctacg acaaaatcac
     2101 aaatataaag acaatgatta tgataaagta cattaaaggg catgactcca caagctgctt
     2161 tgtagcttcc ctcattttca taggcaaaaa gtttataatg ttgagtttgt gtagcaagtt
     2221 ggaatttatc taaaaaatct ttcaaagata ggttatttct taattgtttt atcaagggat
     2281 aaattttttc caagtcttct tttagcttaa tttctttcat ttttaaatcc cttaaatttc
     2341 aaaaatctca ggttttaatt ttaaaagtag gcaaaaagtt gccaaaacag cttgttcttg
     2401 cataaattca cgatctccat ctaaataaag cgtttcttgg ataaaagttc catctctaaa
     2461 cattgcacct atataaatag tgcctgattt taccaaccct tcatcttgct ctcccgtaac
     2521 accgctaata gctagtgcaa aatcaggttt tgcggtctta aagatacctt taagcataaa
     2581 atacacacaa cgctcgctgt attcgccttg attttctaaa atgctttcgc taattccaag
     2641 ccattcgtgt ttgatgcggt tggaataact tataatagat ccttcaaaaa tttcacttac
     2701 acctgaaatt ttggttaagg tgcttgcaca aagtccacct gtgcaacttt cagcaaaaga
     2761 aatttttaat tttttttcta aaagtttaga gcttataaaa tgtataggat ctttacctaa
     2821 aaataccttt tgtccaaaaa gattttttac gctatttaaa aaaccatcaa gttttccaaa
     2881 attagcgcaa gtggccttaa taagcacaag attatctaaa aacttggttg attttatact
     2941 tatctcataa gattttgtta gggtttgcag tagtaatata gcgctttcat catccatgcc
     3001 aaaaatgcaa aaatatgcaa aatttaattt tatatgccca agaagatcag gtaatttttc
     3061 gcttggattt attttaacga cattaatttt tgaatttgaa aaattacata caaagctatt
     3121 tttactaaat tctgctttat ctggaaccaa ggtatcatct tttaagataa gattatcatc
     3181 atttaaagtt gctaaaattt tagcaacagt cgcataatgc aaagggcttg taaataaagt
     3241 gataaaatca tactgattta agagattttc aagcaaaaag ggtaaatctt tatcggtttt
     3301 attttgtatg cgaatttcgt taatttcttt aaatttttct tcataagttc tataaatata
     3361 atttttgaat ttttcgttta tagtaagctc atctcctata agataaagca aatgtttcat
     3421 aaattttcct ttttttctta taattatagc caaaaaca
//
LOCUS       DAPOLW010000145         3456 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.145, whole genome shotgun sequence.
ACCESSION   DAPOLW010000145 DAPOLW010000000
VERSION     DAPOLW010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3456
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.145"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..432)
                     /locus_tag="ROE18_001605"
     CDS             complement(<1..432)
                     /locus_tag="ROE18_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651767.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYAANKNKNDEKLSKNSYLELSKGEFKNCFKDK"
     gene            571..2106
                     /gene="guaA"
                     /locus_tag="ROE18_001606"
     CDS             571..2106
                     /gene="guaA"
                     /locus_tag="ROE18_001606"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HDX3651768.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLNLPVLGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEIKKDNALFKNLPKKQTVWMSHSDKVENLPQGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESIWNMGSFAKTQAEKIREEVGNDKV
                     LCAVSGGVDSSVVAALLASAIKEQVIVVFVDNGLLRSGEKEQVEFMFKNTLGIDLISI
                     DASEIFLSHLANVTDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGSSKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRASLELLRKADVILLEELKSTGWYDKTWQAFCVLLNVKSVGVMGDNR
                     TYDNAVCIRVVDASDGMTATFSHLPYEILENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            2193..>3456
                     /locus_tag="ROE18_001607"
     CDS             2193..>3456
                     /locus_tag="ROE18_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651769.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKLVQTSKTITGIKPSKFQEFKEGDFITEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMMADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRKNRLASLEAQMKTLQSEINLKSNATDADPEKLKA
                     RQERLAKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLK"
BASE COUNT         1290 a          511 c          563 g         1092 t
ORIGIN      
        1 tttatcttta aagcaatttt taaattcacc cttagaaagc tccaaataag aatttttaga
       61 gagtttttca tcatttttgt ttttatttgc cgcataagtg tatttttgag aaaagatttt
      121 tatatctttt atatcaacaa atccacttaa aggatatttc tgtccatatg cttttatgag
      181 aaatttaata taaattttgc tatcatcatg atttaattct tgataagctg ctggatgtaa
      241 ggttattata tttaaaatat gattttttac ataaatttta gcaatcaaac gttgcttagc
      301 aagcggaaaa gaacttaaaa aatctttgca aaaaaataag gtttttaaag gcttataatg
      361 aggtttatcc atcaattcat taataacagc actagcattt ttagtcatct taatattatt
      421 tctttttccc ataagatgat tttagcattt cttttcttaa ttttcttctg tgcttgcgga
      481 tataaaggca accctcaata cacaagctat gaacaaaatg gttcagtaaa aaccattaaa
      541 aaatacgaac aattacatag gtggtaaata atgaaaaaag cagatatttt agttttagac
      601 tttggctctc aatacactca gcttatagca agacgcttaa gggaacaagg agtttatgca
      661 gaaattttac cttttaatgt aagcttagct gatattaagg cgaaagaacc aaaaggtatt
      721 attttaagtg gaggtccagc aagtgtatat gcaactgatg cgtatttttg cgataaaggt
      781 atatttgact taaatctacc tgttcttgga atttgttatg gtatgcaact tatggcacat
      841 cattacaaag ctacagtagc acctgcagga cataaagaat acggcaaagc aaacatagaa
      901 attaaaaaag ataacgcttt gtttaaaaat cttccaaaaa aacaaaccgt ttggatgagt
      961 cattctgata aagtagaaaa tttacctcaa ggttttgaag ttttagccac aagtgaaaat
     1021 agcccttttt gtgtttttgg aaacgaagat aagaaattct ttgctctaca atttcaccca
     1081 gaagtacaac acagcgaatt tggcaaaaat atcttaaaaa attttgctaa atatgcttgc
     1141 aattgtgaaa gtatttggaa tatgggttct tttgcaaaaa ctcaagcaga aaaaatccgt
     1201 gaagaagtag gcaatgataa agtgctttgt gctgtaagtg gcggagtaga tagtagcgta
     1261 gttgctgcac ttttagctag tgctataaaa gagcaagtta tagtagtttt tgtagataat
     1321 ggacttttaa gaagtggaga aaaagaacaa gttgaattta tgtttaaaaa cactttaggc
     1381 atcgatctca tcagcattga tgcaagtgaa attttcttaa gtcacttagc taatgtcaca
     1441 gatcctgaac aaaaaagaaa aatcatagga aataccttta tagaagtttt tgaagaagaa
     1501 gcaaaaaaac ataaagatgt aaaatatctt gctcaaggca cactttatac tgatatcata
     1561 gaaagttctg ttgtaggttc aagcaaaacc attaaaagcc atcataatgt agggggctta
     1621 cctgaaaaaa tgaatcttaa actcatagag cctttaaaag aaatttttaa agatgaagtg
     1681 cgtgccttag gacttgagct tggacttagc aaagaagtag tttatcgtca tcctttccct
     1741 gggccaggtc ttgctatacg cattatggga gaagtaaatc gcgctagctt agaactatta
     1801 cgcaaggctg atgtaatttt acttgaggaa cttaaaagta caggttggta tgataaaact
     1861 tggcaagcat tttgcgtact tttaaatgtt aaaagcgttg gagttatggg ggataaccgc
     1921 acttatgata atgcagtttg tatacgcgtt gtagatgcaa gtgatggtat gacagctacc
     1981 ttctcgcatt taccttacga aattttagaa aacataagtc gccgtatcat caatgaagta
     2041 gaaggtataa atcgcgttgt ttatgatatc tcaagcaaac cacctgcaac tatagaatgg
     2101 gaataatcca ttttttctag ctcttatttt taatataaaa atttttataa aaataaggct
     2161 agaatttatt taagaaattt caaggaagaa atatgcatgg aaaaatagct atttatatgg
     2221 attctacagg acgtggaacc gttacaaact cagcaaatac cttttttgac tttaatcgcc
     2281 aaatttggaa tgataaaaaa agtatgccaa gtgttggtat gcttgtggaa tttagaactc
     2341 tttctagcga aaaaaaagca gaagacggca aactcgttca aacaagcaaa accataacag
     2401 gtataaaacc ttcaaaattt caagaattca aagaagggga ttttatcact gagcatgatt
     2461 tttggaaaac tgataatgat gatgaattag aagacttgca aaactcaaga agaagtgctt
     2521 atataacaga actctataga acaacagact ttgacactat agaaaaaatt cctctttctt
     2581 ttactatacc tcaagctata caaaaatatt ttgcccatga aattttatcc gtagaaacgc
     2641 ttcaagccaa tctacaagat gaaaaggaaa ttccttgtat acttgattat cttatactta
     2701 aaagattttt atttaaagct tatgatactt taatttttat ggataatagc atagaccaaa
     2761 cccaatttag cgcattaaaa agcatcatga tgcatttaga gaattcgtat aagcaaatga
     2821 tggctgatca aaaaccaaat atcactaaaa tttttaacga aactttttta tctttgcagt
     2881 gtcattacca agctttagta gccaccatag atacaagaaa aaatcgtcta gcctcacttg
     2941 aagcacaaat gaaaacttta caatctgaaa taaatcttaa aagcaatgcg accgatgcag
     3001 accctgaaaa acttaaagca cgacaagaaa gattggctaa actacaaaaa gaagcagaat
     3061 actacagaac aacactaaaa agacttgatg ctataaggga agatttttat aagaaaaatt
     3121 acaatatttt cgaaaatgct tttaaacttt cacgagaaaa actctttaaa aaaattgtca
     3181 caggtttaaa tctatgtgca accataatgg atgtcaaaat ttggcactta tctttaaaat
     3241 catcaggggt taaaaattct tattttacta tgagtaatat agaaaattct ttctgttctc
     3301 tttcttttgc agaacattac ttaagtcgct taaataaatc cgctctaaat ccttttgatc
     3361 aaaaactttt agtgtatatt caaaaaatca caaaagaaca aagaaaaaaa tttttagttg
     3421 tcacatcgga tttagattta ttatgcaaat taaaaa
//
LOCUS       DAPOLW010000146         3381 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.146, whole genome shotgun sequence.
ACCESSION   DAPOLW010000146 DAPOLW010000000
VERSION     DAPOLW010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3381
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.146"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            96..311
                     /locus_tag="ROE18_001608"
     CDS             96..311
                     /locus_tag="ROE18_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HDX3651770.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPIMEKLKKSESGKIVILKNNKFEA
                     VMLSMKEFERLQNAMQLLENIYKNQKA"
     gene            313..1032
                     /locus_tag="ROE18_001609"
     CDS             313..1032
                     /locus_tag="ROE18_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDX3651771.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLSLPQILILHGWGANKELMKQS
                     FCPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLNVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSLKVRFKIRIFKILKLFGLGKFYRYFASKDGANL
                     SPIMYETFKKVVDEDFSEIFAKQKAKSLIFWGKSDEATPLYCGEKMHQFLKNSTFYPL
                     EGDHFFFLKHSAFIAQKIKEI"
     gene            1033..2460
                     /locus_tag="ROE18_001610"
     CDS             1033..2460
                     /locus_tag="ROE18_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HDX3651772.1"
                     /translation="MLINTLYFINSLFFNFCIAFYLMSALQWYSYKFKRVFFHYHKPL
                     WHLYFLFIPYFLFLAFPLYSLVYFALIHTPILYFWNKGIDKKLVFTSKVKWFFVFVFV
                     YNAIFTILALRFSFLFNLFSLPFALLSLKIYEFFTNLYYKKQAKAKLRANENLKIILI
                     TASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINANLSQDTQIYIAEAGAR
                     LKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLEALNSERLEKAFLHSST
                     QKEEDKLISLYDDKLSLIHSSLEGLEFKVDIENKSYDFKSQILGDFNAQNLCVCILCA
                     HYLGIKLEKIQKQVLNINSVEHRLQVLSREPKFIIDDGFNGNFKGMSTSYKLCKSYKG
                     RKVLVSPGIVEVSEEENIKLAKIINECFDLAIISAQINAEIFKKELKIKTIILKEKSQ
                     LVQTLAKETKHGDLILFSNDAPSFM"
     gene            complement(2518..>3381)
                     /locus_tag="ROE18_001611"
     CDS             complement(2518..>3381)
                     /locus_tag="ROE18_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651773.1"
                     /translation="ERKAENNSYTSDIKKYLGIDKYYTNIDMAETIKQYYNQFNQIVN
                     YAFNDTNKTSFTEADINSMPKGISELSSDKTIGIMPKNYDKLTITNYYNTQEQYNEAE
                     QLGMFGHINIGLQPLNFTPQSMQTQNLDKDTAIDTFNPDMSVYPQNEDGSYSKEALFM
                     SFLKSTGVSPREGSATLNPIAKSYAEAMAKESFDGSLASLDDIMTGKVDFASLLKGYA
                     QEGWLDADIYAMDKGVAWQNTSIGYGGAWFDREFNQVKANGWKASSESINSYVGSIMD
                     RLNNLMGQTRV"
BASE COUNT         1165 a          523 c          479 g         1214 t
ORIGIN      
        1 cttcactcca tcaacggaca aaaaggaaaa ttataagctt ttaagtcaaa atacgctaaa
       61 ttatacataa aatttagcgt attttaggaa gaaaaatgct ctcttttaaa caagatgaaa
      121 tttacactgc caccgaggtg gtaagaaatt ttagccccat tatggaaaaa ctcaaaaaaa
      181 gtgaaagtgg aaaaatagtt attttaaaaa ataacaaatt tgaagctgta atgcttagta
      241 tgaaagaatt tgaacgctta caaaatgcca tgcaactttt agaaaatatc tacaaaaatc
      301 aaaaggctta aaatggctca aactcaactt tcttataaaa acaaaactta tcaaatttct
      361 tatgaaattt taggcgatct ttccttaccg caaatactta tcttacacgg ctggggagct
      421 aataaagaac ttatgaagca aagtttttgt ccttttttaa aagatttttg tcaaatttat
      481 atggatttag caggttttgg aaattcaagc gtggaagaaa ttttaaacac tcaagattat
      541 gccaatatca cagaactttt tttaaaacaa aaaaaactca atgtctgttt tttcatgggg
      601 cattcttttg gtggaaaagt aagtacccta ctcgcaaaag aaaaagacac cctaatctta
      661 ctttcaagtg caggaatttt ggctaaaaaa tccctaaaag tgcgttttaa aatccgtatt
      721 tttaaaattt taaaactctt tggtttggga aaattttatc gctattttgc tagtaaagat
      781 ggagcaaatc ttagtcctat aatgtatgaa acctttaaaa aggttgttga tgaggatttt
      841 agtgaaattt ttgccaagca aaaggctaaa agcttgattt tttggggaaa aagcgatgaa
      901 gctacgcctt tgtattgtgg tgaaaaaatg catcaatttt taaaaaatag tactttttat
      961 cctttagagg gggatcattt tttcttttta aaacactctg ctttcatagc tcaaaaaatc
     1021 aaggaaattt aaatgcttat caatactctt tattttatca attctttatt ttttaatttt
     1081 tgtatagctt tttatcttat gagtgcttta caatggtatt cttataaatt taaacgcgtg
     1141 ttttttcatt atcataaacc tttgtggcat ttgtattttt tatttattcc ttatttttta
     1201 ttcttagctt ttcctttata ctctttggta tattttgcat tgatccatac tccgattttg
     1261 tatttttgga ataaaggcat agataaaaag cttgttttta caagtaaggt taaatggttt
     1321 tttgtttttg tttttgttta taatgctatt tttaccatcc ttgctttgcg tttttctttt
     1381 ctttttaatc tttttagtct tccttttgct ttattgagtc ttaaaattta tgagtttttt
     1441 acaaatttat attataaaaa acaagccaaa gccaaactaa gagccaatga aaatttaaaa
     1501 atcatactca ttaccgcaag ttttggaaaa acaagtatta aaaatttttt atacgaactt
     1561 ttaaaagatg actttaaaag ctacaaaaca ccacgctctg tcaatacctt actaggtata
     1621 gttgctgata tcaatgctaa tttaagtcaa gatactcaaa tttacatagc tgaagcaggc
     1681 gctagactta aaggcgatat cgatgaaatc acgcattttt tacaacctca aatcagcata
     1741 gtaggagaga taggcaatgc acatttagag tattttaaaa gtgttgaaaa tatccgctca
     1801 accaaacttg aagccttaaa ttccgaaaga ctagaaaagg cttttttaca ctctagcacc
     1861 caaaaagaag aagataaact catcagcctt tatgatgata aattaagtct tattcattca
     1921 agtcttgaag gtttagaatt taaagtcgat atagaaaata aatcctatga ttttaaaagt
     1981 caaattttag gggattttaa tgcgcaaaat ctttgtgttt gtatactttg tgctcattat
     2041 cttggcataa aactagaaaa aattcaaaag caagttttaa atataaattc cgtagaacat
     2101 cgcttgcaag tgctttcaag agagcctaaa tttatcatag atgatggttt taatggaaat
     2161 tttaaaggta tgagcacaag ctataaactt tgtaaaagct ataaaggacg caaagtttta
     2221 gtaagtcctg gtatagtaga agtaagcgaa gaagaaaata taaaacttgc caaaatcatc
     2281 aatgagtgtt ttgatcttgc tatcattagt gcacaaatca atgctgaaat tttcaaaaaa
     2341 gagttaaaaa taaaaaccat tatacttaaa gaaaagagtc aactagttca aactctagct
     2401 aaagaaacaa aacacggaga tttgatactc ttttcaaacg atgcacctag ctttatgtga
     2461 ttcgcataag tatttgcaaa tgtcatcatt tttaatttga cttcgtgcaa atacttccta
     2521 aaccctagtt tgccccataa gattatttaa tctatccatt atagatccaa cataagaatt
     2581 gatactttca ctgcttgctt tccaaccatt agcttttact tgattaaatt ctctatcaaa
     2641 ccaagctcca ccataaccta tgcttgtatt ttgccaagca acccctttat ccattgcata
     2701 tatatctgca tcaagccaac cctcttgtgc atagcctttt aacaaacttg caaaatcaac
     2761 tttacctgtc ataatgtcat ctaaagaagc taaagagcca tcaaagcttt ctttagccat
     2821 agcttcagca taagacttag ctataggatt taatgttgca ctaccttctc ttggcgatac
     2881 acccgttgat tttaaaaaac tcataaacaa agcttcttta gaataacttc catcttcatt
     2941 ttgtggataa actgacatat caggattaaa agtatctatt gcagtgtctt tatctaaatt
     3001 ttgagtttgc atactttgcg gagtgaaatt taatggttgt aagcctatat taatatgtcc
     3061 aaacattcct aattgttctg cttcattata ttgctcttgt gtattataat agtttgttat
     3121 tgttagcttg tcataatttt tcggcataat acctatagtt ttatcagatg ataattcact
     3181 aattccctta ggcatagaat ttatatctgc ttcagtgaaa cttgttttat tggtatcatt
     3241 aaaagcataa ttaacaattt gattaaattg attataatat tgttttatgg tttcagccat
     3301 atctatgttt gtataatatt tatctatacc taaatatttt tttatatctg aagtataaga
     3361 gttattttca gccttcctct c
//
LOCUS       DAPOLW010000147         3332 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.147, whole genome shotgun sequence.
ACCESSION   DAPOLW010000147 DAPOLW010000000
VERSION     DAPOLW010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3332)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3332)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3332
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.147"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(20..1360)
                     /locus_tag="ROE18_001612"
     CDS             complement(20..1360)
                     /locus_tag="ROE18_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HDX3651774.1"
                     /translation="MDKFKNIFLNKVFNKNQEQYALIYEEQKYTYNDLYNNIINKINL
                     LTKLKDINIVGITGDYDFESISLFLACIELNKIIIPFINESEIDNKLAEVNCDILFKN
                     NQYELQKKHCNNHDLIQKLIDDNKPGLILFSSGSTGKPKAMVHNLDKILNAYLNKKSK
                     KLNILLFLMFDHIGGLNTLFNCLSMNACAIAIKERKNIEALAQTIEKYQISLLPASPS
                     LLSLMLVANVIEKYNLSSLKIISYGTEKMPEALLVKLKQTFPKVKFHQTFGTSEVGIA
                     QTKSFGNYFKLENIAYKIINNELFLKSNMQSLGYLNADNSVFTNDGYFATGDLVEVIN
                     ENGEEYIKIIGRNKEVINVGGEKVLPQEVEGILMQIPFIQDCLVYGQNNPLTGQSVCV
                     KIVLEQNENPANLEAKKEIRLFCKDKLASYKIPTKVEIVQKLEISERFKKIRNS"
     gene            complement(1353..2075)
                     /locus_tag="ROE18_001613"
     CDS             complement(1353..2075)
                     /locus_tag="ROE18_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006656008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDX3651775.1"
                     /translation="MQKIIIITGTRKGIGKELSEYYLAKNHIVCGCSRGKASINHKNY
                     RHFELDVCDEKTVVSMVRSIKKEFGKIDILINNAGIAAMNHILTTPFKSLDNIFKTNV
                     YGSFLFIREVSKIMSQTYKKEQVAMPYRIVNFSTVAVALRLEGEAIYAASKAAICNLT
                     QVCAKELSSFGITCNAIGPTPVPTDLIKNVPKDKIQDLLNKQAIKRFGNFQDLANVID
                     FFINEKSDFITGQIIYLGGVNG"
     gene            complement(2075..2374)
                     /locus_tag="ROE18_001614"
     CDS             complement(2075..2374)
                     /locus_tag="ROE18_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651776.1"
                     /translation="MKNKIQQHIIQTLRSSADEYEVDELKIADEHTKLYNGFGGCLDS
                     LALVNLVADLEELLSREFNKEIILADEKMMSARNSPFKDVESLTNYIVKKLQEQE"
     gene            2482..>3332
                     /locus_tag="ROE18_001615"
     CDS             2482..>3332
                     /locus_tag="ROE18_001615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651777.1"
                     /translation="MRKNKILIMGASNSILPGGLRAGLSQSNVDFDNLSIGGSIASSK
                     IYTILKYKQRIKEADLVILECNLADVDRVVFDDIGFEECIRNTCWLYEELYKINEKVL
                     NLLLVNTHKNEVEKYIRNIHKLLCNKYGFNSIDMHSYYESREILNFFLSHPDPTHQIS
                     TIMYNLGKNIVTNIENFKKSKINIKQHNPLFLYLTPLDLDLIEGNLQYSLKKHPLFQE
                     CQTYRIELNTKLKFPTKYSNFILIGMHTYNEELKIKNWMKKRQSYGNIAITNDTCCIV
                     KAAACYNT"
BASE COUNT         1164 a          462 c          419 g         1287 t
ORIGIN      
        1 tacaaaaaat aagaaagagt taagaatttc ttattttttt aaaccgttcg ctgatttcta
       61 acttttgaac aatctctact ttggttggta ttttatagct agctagttta tctttgcaaa
      121 atagtcttat ttcctttttg gcttctaaat tagcaggatt ttcattttgt tctaatacaa
      181 tctttacaca gacactttgg cccgttagag gattattttg tccatagact aaacaatctt
      241 gtataaatgg tatttgcatt aatataccct ctacttcttg gggtaatact ttttctccgc
      301 caacattaat aacttctttg tttcttccga taattttaat atattcttca ccattttcat
      361 taatcacttc aaccaaatcg ccagtagcaa agtatccatc atttgtaaaa acagagttat
      421 cagcatttaa ataacccaaa ctttgcatat tgctttttaa aaatagctcg ttgttgataa
      481 ttttatatgc tatattttcc aatttaaagt aatttccgaa gctttttgtt tgagctatgc
      541 ctacttcgct tgtaccaaag gtttgatgaa atttaacttt tggaaaagtt tgttttaatt
      601 ttacaagcaa agcttctggc attttttctg tgccatagct aataatcttt aaagagctta
      661 aattatattt ttcaattaca tttgctacca acattaaact aagtaaagaa ggtgaagcag
      721 gtaagagtga aatttgatat ttttctatgg tttgagctag agcttcaata ttttttcttt
      781 cctttatagc aattgcacaa gcattcatac taagacagtt aaacaaagta tttaaaccac
      841 ctatatgatc aaacattaaa aacaataaaa tattaagttt ttttgatttt ttattaagat
      901 aggcatttaa aatcttatca agattatgca ccatagcttt aggtttacct gtgctgccac
      961 ttgaaaataa aattaaacca ggtttgttat catctatgag tttttggatt aaatcatgat
     1021 tgttacaatg ttttttctgt agctcgtatt gattgttttt aaataaaata tcgcaattaa
     1081 cttcggcaag tttgttgtca atctcacttt cattgataaa tggaatgatt attttattaa
     1141 gctcaataca tgctaaaaat aaacttatac tttcaaaatc ataatctcct gtaataccca
     1201 caatatttat atctttaagc tttgttaata aattgatttt attgatgatg ttattataca
     1261 aatcattgta agtatatttt tgttcttcat agattaaagc atattgctct tgatttttat
     1321 taaaaacttt atttaaaaag atatttttaa atttatccat ttactccacc tagatatatt
     1381 atctgccctg ttataaaatc acttttttca ttaataaaaa aatcaatcac attagcaagg
     1441 tcttgaaaat ttccgaatct ttttatagct tgtttattaa gtaaatcttg tattttatct
     1501 tttgggacat ttttaattaa atcagtagga actggggtag gtcctatggc attgcaagta
     1561 atgccaaatg aacttaattc tttagcacaa acttgagtta aattgcaaat agctgctttt
     1621 gatgcagcat atatagcttc cccttccaac cttaaagcaa ctgcaacagt agaaaaattt
     1681 acaatcctat aaggcatagc aacttgttct tttttataag tttgactcat aatctttgaa
     1741 acttctctta taaacaaaaa actaccatag acattagttt taaaaatatt atctaagctt
     1801 ttaaatggag tggttaatat atgattcata gctgctatgc cagcattatt aattaaaata
     1861 tcaatttttc caaattcttt ttttatactt cttaccatag aaactacagt tttttcatcg
     1921 caaacatcta attcaaaatg tctataattt ttatgattta tacttgcttt acctcttgag
     1981 caaccacaaa ctatatgatt ttttgctaaa taatattcac ttaattcttt gcctatgcct
     2041 tttctagttc ctgtgataat gataattttt tgcatcattc ttgctcttgg agttttttaa
     2101 ctatataatt ggtcaagctt tcaacgtctt taaatggaga atttcttgca ctcatcattt
     2161 tttcatctgc taaaatgatt tctttattaa attctctact taaaagttct tccaaatcag
     2221 caactaaatt tactagagct agcgagtcta aacaaccacc aaaaccatta tataattttg
     2281 tatgttcatc tgctattttt aattcatcta cttcatattc atctgctgat gatcgaagtg
     2341 tttgtataat atgttgttga attttatttt tcatctaaca aatcctttgt tgtgtgtttg
     2401 attaaataat ttatatttta ttatatatga gatataatta tacttaaaaa gtataacaaa
     2461 ttatcaatat gggaaaatgt aatgagaaaa aataaaattt taataatggg tgcaagcaat
     2521 tctatattac ctggcggact tagagctggt ttaagtcaaa gtaatgttga tttcgataat
     2581 ttatcaatag gtgggtcaat tgcttctagt aaaatttata caatattgaa atataaacaa
     2641 cgtataaaag aagcagattt agtgatttta gaatgtaact tagcagatgt tgatagggtt
     2701 gtatttgatg atattggttt tgaagagtgt attagaaata cttgttggct atatgaagaa
     2761 ttatataaaa ttaatgaaaa agttttaaat cttttgttgg taaatactca caagaatgaa
     2821 gttgaaaaat atataagaaa tattcataag ttgttgtgta ataaatatgg atttaatagt
     2881 atagatatgc atagttatta cgaaagtaga gaaattttaa attttttctt atcgcatcca
     2941 gatccaactc atcaaatttc tacaattatg tataatcttg gaaaaaatat agtaaccaat
     3001 atagaaaatt tcaaaaaatc aaaaataaat ataaaacaac acaatcctct atttttgtat
     3061 ttaacacctc ttgatttgga tttaatcgaa ggtaatttac aatactcttt aaaaaaacat
     3121 ccattgtttc aagaatgtca aacatataga atagaattaa atactaaatt gaaatttcca
     3181 acaaagtata gtaatttcat tttaataggg atgcacacat ataatgaaga attaaaaata
     3241 aaaaattgga tgaaaaaaag acaaagttac ggaaatattg caataactaa tgatacatgt
     3301 tgtattgtaa aagcagcagc atgctataat ac
//
LOCUS       DAPOLW010000148         3277 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.148, whole genome shotgun sequence.
ACCESSION   DAPOLW010000148 DAPOLW010000000
VERSION     DAPOLW010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3277)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3277)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3277
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.148"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            129..1160
                     /gene="pseI"
                     /locus_tag="ROE18_001616"
     CDS             129..1160
                     /gene="pseI"
                     /locus_tag="ROE18_001616"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HDX3651778.1"
                     /translation="MQIGNFNTDKKVFIIAELSANHAGSLEMALQSIKAAKKAGADAI
                     KIQTYTPDSMTLNSNKEDFIIKGGLWDKRKLYKLYESAKTPYEWHSQIFETAQNEGIL
                     CFSSPFAKEDLEFLKRFDPIAYKIASFEANDENFVRLIAKEKKPTIVSTGIATEEELF
                     KICEIFKEEKNPDLIFLKCTSAYPTAIEDMNLKGIASLKEKFNVEVGLSDHSFGFLAP
                     VMAVALGARVIEKHFMLDKSIESEDSKFSLDFDEFKAMIDAVRQAESALGDGKLDLDE
                     KALKNRVFARSLYASKDIKKGEMFSEENVKSVRPSFGLHPKFYQELLGKKATKDIEFG
                     DALKQGDFT"
     gene            1157..2128
                     /gene="legB"
                     /locus_tag="ROE18_001617"
     CDS             1157..2128
                     /gene="legB"
                     /locus_tag="ROE18_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HDX3651779.1"
                     /translation="MKNILVTGADGFIGSHLCESLVKKGFKVRALSQYNSFNFWGHLE
                     KSPFLKDMEVVSGDLRDSFFCEKITKNIDAIFHLGALIAIPYSYTAPQSYVDTNVNGT
                     LNMLEAAKKNEISHFIHTSTSEVYGTAFYVPIDEKHPLQPQSPYSASKIAADMMALSY
                     YNSFNLNVNIARPFNTYGPRQSARAIIPTIITQILSGAKEIKLGDLSPKRDLNFVLDT
                     CEGFISLLNLKHFGEVYNIGSGVEYSMQEVLNLIQKILDSKVKIIQDEQRLRPKNSEV
                     FRLCCDANKLKKATNWQSKISLEEGLRQSIEYFKENLENYKSELYNV"
     gene            2121..3275
                     /gene="legC"
                     /locus_tag="ROE18_001618"
     CDS             2121..3275
                     /gene="legC"
                     /locus_tag="ROE18_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase LegC"
                     /protein_id="HDX3651780.1"
                     /translation="MFEKEISFIKSLFNKENIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVTRFEEALKEKTKARFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AIAYTGAKPVFLDIDENTLSLSPKALEHFLENQTYQKDNLSYNKTTHKPIKACVIMHT
                     FGLSAHIKAIKELCEKYHILLIEDAAEALGSTYENKALGTFGKCGILSFNGNKIITGG
                     CGGAILSDDENLAKLARHLSTTAKIPHPYEYDHDRIAYNYRLCNINAAILLAGLENLE
                     LFLENKRELAKIYKDFFKNHDKCKFIDEKSNEKSNFWLNTLLFKDENLRNIFLEECLK
                     NNIFVRPVWKSLPSLKAFQNCQSNELINTKKLEKRLINLPSSVRIANKKE"
BASE COUNT         1230 a          509 c          570 g          968 t
ORIGIN      
        1 tttgaatgaa accaagcaaa atcataacaa agttgtaata tttatataat ataaatatat
       61 aaattgaaga aatatataat ataattatat atcattttag tcaggaaatt taccaaagaa
      121 agaaaagtat gcaaatagga aattttaaca ccgataaaaa ggtttttatc atagcagaac
      181 ttagtgcaaa tcacgcagga agtcttgaga tggcacttca aagtataaaa gctgccaaaa
      241 aagcaggtgc tgatgcgata aaaattcaaa cttacactcc agatagcatg actctaaata
      301 gcaacaaaga agattttatt attaagggtg ggctttggga taaaagaaaa ctttataagc
      361 tttacgaaag cgcaaaaact ccttatgaat ggcattctca aatctttgaa accgcacaaa
      421 atgaaggcat actttgtttt tcaagtcctt ttgccaaaga agatttagaa tttctaaaac
      481 gctttgatcc tatagcctat aaaatcgctt cttttgaagc taatgatgaa aatttcgtgc
      541 gtttaatcgc caaagaaaaa aaacctacta tcgtttcaac gggcattgct acagaagaag
      601 aactttttaa aatctgtgaa atttttaaag aagaaaaaaa tcctgattta atctttttaa
      661 aatgcacttc ggcttatcct actgccatag aagatatgaa tttaaaaggc atagcaagtt
      721 taaaagaaaa atttaatgtt gaagtgggac taagtgatca tagctttggt tttttagccc
      781 ctgttatggc agtagcactt ggagctagag tgatagaaaa gcattttatg ttagataaaa
      841 gcatagaaag tgaagacagt aaatttagtc ttgattttga tgaatttaaa gctatgatag
      901 atgcagtaag acaagctgaa agtgctttag gcgatggtaa gttagatcta gatgaaaagg
      961 cgcttaaaaa ccgtgttttt gcaagaagct tatatgcaag taaggatatc aaaaaaggtg
     1021 aaatgttcag cgaagaaaat gtaaaatccg tgcgtccttc ttttggacta catcctaaat
     1081 tttatcaaga acttttagga aaaaaagcta ctaaagatat agaatttggt gatgctttaa
     1141 aacaaggaga ttttacatga aaaatatttt agttacaggt gctgatggtt ttataggctc
     1201 tcatctttgt gaaagtttgg tcaaaaaagg ttttaaagtc agagctttaa gtcagtataa
     1261 ttcttttaat ttttggggac atttagaaaa aagtcctttt ttaaaagaca tggaagttgt
     1321 aagtggggat ttaagagata gttttttttg cgaaaaaatc accaaaaata tagatgcgat
     1381 ctttcatctt ggcgccttaa tcgccatccc ctactcctac acagccccac aaagctatgt
     1441 ggataccaat gtcaatggca ctttaaatat gctcgaagca gctaaaaaaa acgaaatttc
     1501 gcattttatc cacacctcaa caagcgaagt ttatggcacg gccttttatg tgcccatcga
     1561 tgaaaaacac cctttacaac ctcaaagccc ttattctgca agcaaaatcg ctgcagatat
     1621 gatggcgctg agttattata attcttttaa tttaaatgtc aatattgcac gcccttttaa
     1681 cacctatgga ccaagacaaa gcgcaagggc tatcatacct accatcatca cacaaatttt
     1741 aagcggagca aaggaaatca aactaggaga tttaagccct aaaagggatt taaattttgt
     1801 gctagatact tgcgagggtt ttatctctct tttaaattta aaacattttg gagaagttta
     1861 taatataggc tcaggagtgg aatactccat gcaagaagta cttaatctca tacaaaaaat
     1921 tttagattct aaggtaaaaa tcatccaaga tgagcaaaga ttgcgtccta aaaatagcga
     1981 agtttttaga ctttgttgcg atgcaaacaa gcttaaaaaa gctacaaatt ggcaaagcaa
     2041 aataagtcta gaagaaggtt taagacaaag catagagtat tttaaagaaa atttagaaaa
     2101 ttataaaagt gagctttata atgtttgaaa aagaaatttc ttttataaaa agtcttttta
     2161 ataaagaaaa tatcgcccta catgagcctt gctttatagg caatgagaaa aaatatctct
     2221 tagaatgtat cgatagcggt tttgtttcaa gcgtaggaga atttgtaacg cgttttgaag
     2281 aagctttaaa agaaaaaacc aaagcacgct ttgtcatcgc tacaaataca ggtacagcag
     2341 cccttcatat cgctttatta gctaatggta tcgatgaaaa ctgcgaagtc atcactcaaa
     2401 gcataagctt tgtcgctacg gccaatgcta tcgcttatac aggtgcaaaa cccgtttttt
     2461 tagatataga tgaaaacact ctaagtttaa gtcctaaggc tttagagcat tttttagaaa
     2521 atcaaactta tcaaaaagat aatcttagct ataacaaaac cacacacaaa cccatcaaag
     2581 cttgtgttat tatgcacacc tttggtttaa gcgctcatat aaaagccatc aaagagcttt
     2641 gtgaaaaata ccacatcctt ttaattgaag atgctgcaga agccttagga agcacctatg
     2701 aaaacaaggc cttaggcact tttggaaagt gtggaatttt aagctttaat ggtaataaaa
     2761 tcatcacagg tggatgcggt ggggcgatat taagcgatga tgaaaattta gccaaacttg
     2821 caagacacct tagcaccaca gctaaaatcc cccatcctta cgaatacgat catgatagga
     2881 tagcttataa ttaccgtctt tgcaatataa acgcagcaat cttgcttgca ggacttgaaa
     2941 atttagaact ttttttagaa aacaaaagag aacttgctaa aatttacaag gattttttta
     3001 aaaatcacga taaatgtaaa tttatcgatg aaaaaagcaa tgaaaaaagc aatttttggc
     3061 tcaatacctt gctttttaaa gatgaaaatt taagaaatat ctttttagaa gaatgcttga
     3121 aaaataatat tttcgtccgt cctgtatgga aaagcttacc gagtttaaaa gcttttcaaa
     3181 actgtcaaag caatgagctt ataaacacta aaaaattaga aaaacgcttg attaatttac
     3241 ctagtagcgt tagaatagca aataaaaagg aatgatg
//
LOCUS       DAPOLW010000149         3242 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.149, whole genome shotgun sequence.
ACCESSION   DAPOLW010000149 DAPOLW010000000
VERSION     DAPOLW010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3242)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3242)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3242
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.149"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(30..752)
                     /locus_tag="ROE18_001619"
     CDS             complement(30..752)
                     /locus_tag="ROE18_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002917465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDX3651781.1"
                     /translation="MIIIFPMAGLSSRFTKAGYDKPKYMLDLKGNSVFFHAVNSFKKY
                     FKDFKFLFIYRDIENTSNFIKEECKKLGIKSYESVRLEQETLGQAHTVRLGLERANIK
                     DDESVLIFNIDTFRPNFSLPTILDFCKIDGYLEVFEADGEQWSFVLADENDNVIKTAE
                     KERISNLCSSGLYYFKKIKDFKEIFDRMKAENDFSKGELYIAPMYNYLIKKGLHIKYH
                     KISLDEIIFCGTPEDYERLISI"
     gene            complement(749..2272)
                     /locus_tag="ROE18_001620"
     CDS             complement(749..2272)
                     /locus_tag="ROE18_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004313391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HDX3651782.1"
                     /translation="MILITSAKYSSSDFTLEFGKIPPSFLPLGNKRLYEYQIELFKNC
                     NQKVFLSLPSDFKLSKFDEKKLKELNVEILFVPNNLSLGESVVYCLNVCCAFDEKLYI
                     LHGDTFFKELAFKENSLQVAKVKENYDWAYLDNEFHTPLKTIEDDLILAGAYSFSHPQ
                     FLIKCIVESSYSFVDGIKSYSKAYAFDIIKNDTWLDFGLITSYFHSKKAVSTQRNFNN
                     IDISNGYIKKSSSWQEKIKAEINWFDNLPKELFIYTPKVITYEDSYEIEYICNNTLAE
                     LYVFGKLPSYVWKRIFKSLKEFLDKLHSFKSNDKDINFNCKEKTLKRLQEFSMQSGID
                     LHKNIVINSKSYPSILTLVDKLDFYMNDIDEFSLIHGDFCFSNIMYDFRAGAIKTFDP
                     RGFDFNGKITPYGDKKYDFAKLVHSVFGLYDFIIAGFFECKVNNDNIEFFIEEDKNIL
                     DIQKEFLDVFDIDDNIKALTLHLFLSMLPLHNDFKEKQMAFLANTFMLYDNFFKESK"
     gene            complement(2269..2667)
                     /locus_tag="ROE18_001621"
     CDS             complement(2269..2667)
                     /locus_tag="ROE18_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIC family phosphatase"
                     /protein_id="HDX3651783.1"
                     /translation="MKTLLIDLDGTLTIDEENVDYIDKKPNFDLIQTLKEYKKQGFKI
                     NIFTSRNMRTFNGDLEKIKFHTLPIIISWLKKHDVPYDEIIIGKPWCGYEGFYVDDKA
                     IRPSEFISLNYEQIKELLKKENPHKDGGNK"
     gene            2786..3242
                     /locus_tag="ROE18_001622"
                     /pseudo
     CDS             2786..3242
                     /locus_tag="ROE18_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895302.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
BASE COUNT         1228 a          495 c          341 g         1178 t
ORIGIN      
        1 aaataaagtc aaatggtaaa atgttaattt tatattgaaa ttaatctttc gtaatcttct
       61 ggagttccgc aaaatataat ttcatctaat gaaattttat gatattttat atgtaagcct
      121 ttttttataa gataattata cataggagct atatacaatt ctcccttgct gaaatcattt
      181 tcagccttca ttctatcaaa aatttcttta aaatctttta tttttttaaa ataataaagt
      241 ccgctgctgc aaagatttga aattctttct ttctcagcag ttttaatcac attgtcattt
      301 tcatcagcta aaacaaaact ccattgttct ccatctgcct caaatacctc taaatagcca
      361 tcaattttac aaaaatctag aatagtaggt aaagaaaaat ttggcctaaa ggtatcgatg
      421 ttaaaaatta aaacactctc atcatcttta atatttgccc tttctaatcc aagtcttact
      481 gtatgggctt gacctaaagt ttcttgttct aatcttacac tttcgtaaga ttttattcct
      541 agttttttac attcttcttt tataaaattg ctagtattct caatatctct atatataaaa
      601 agaaatttaa agtctttaaa atatttttta aaactattta cggcatgaaa aaaaacacta
      661 tttcctttta aatcaagcat atatttaggt ttatcatagc cagcctttgt aaaacgacta
      721 ctaagtcctg ccataggaaa gattataatc atttactctc cttaaaaaaa ttatcataaa
      781 gcataaaagt atttgccaaa aaagccattt gtttttcttt aaaatcatta tgcaaaggta
      841 acatagataa aaacaaatgc aaagtcaaag ctttaatatt atcatctata tcaaacacat
      901 ctaaaaattc tttttgaata tccaaaatat ttttatcttc ttctataaaa aactctatat
      961 tatcgttatt aactttacac tcaaaaaatc ctgcaataat aaaatcataa agcccaaaaa
     1021 cagaatgaac taattttgca aaatcatatt ttttatctcc ataaggggta atttttccat
     1081 taaaatcaaa ccctcttgga tcaaaggttt ttatggcacc agctctaaaa tcatacataa
     1141 tatttgaaaa acaaaaatct ccatgtatta atgaaaattc atcaatatcg ttcatataaa
     1201 aatcaagctt atctactaaa gtcaaaatac ttggataaga ttttgaattg ataacaatat
     1261 ttttgtgcaa atcaattcca ctttgcatgc taaattcttg caatcttttt aaagtttttt
     1321 ccttacaatt aaaatttata tctttatcat tgcttttaaa agaatgcaac ttatctaaaa
     1381 attcttttaa agacttaaat attcttttcc aaacataact aggtaatttt ccaaaaacat
     1441 acaattctgc taaagtatta ttgcaaatat attctatttc ataactatcc tcataagtta
     1501 taactttagg ggtatagata aatagttctt tgggcaaatt atcaaaccaa ttaatctctg
     1561 cttttatttt ttcttgccaa gaagaagact tttttatata gccatttgaa atatctatat
     1621 tgttaaaatt tctttgtgtg cttacagctt ttttagagtg gaaataactt gttataagac
     1681 caaaatcaag ccaagtatca ttttttataa tatcaaaagc ataagcttta gaataagatt
     1741 ttataccgtc tacaaaagaa taactacttt caactataca ttttatcaaa aactgaggat
     1801 gagaaaaact ataagctcct gctaaaatca aatcatcttc tattgttttt aacggtgtat
     1861 gaaattcatt atccaaataa gcccaatcat aattttcctt aacttttgca acctgtaaag
     1921 aattttcttt gaatgcaagt tctttgaaaa aagtatcccc gtgtaaaata taaagttttt
     1981 catcaaaagc acaacaaaca tttaaacaat aaaccacaga ttcacctaaa gataaattat
     2041 ttggcacaaa taaaatttca acattaagtt cttttaattt tttctcatca aatttactta
     2101 acttaaaatc gctgggtaaa gataaaaaaa ctttttgatt acaattttta aaaagctcta
     2161 tttgatattc atacaatctt ttattaccaa gcggtaaaaa agatggagga atttttccaa
     2221 attctaaagt aaaatcagaa gatgaatatt tcgcagaagt tatgagtatc atttattacc
     2281 gccatcttta tgaggatttt ctttttttaa aagttcttta atttgctcat aatttaaact
     2341 tataaattcg gacggacgaa tggctttatc atcaacataa aatccttcat acccacacca
     2401 aggtttacct atgattattt catcatacgg tacatcatgt tttttaagcc aagaaataat
     2461 gataggcaaa gtatgaaatt taattttttc aagatcgcca ttaaatgtac gcatgttacg
     2521 acttgtgaaa atattgattt taaagccttg ttttttatac tcttttaaag tttgaattaa
     2581 atcaaaattt ggctttttat caatataatc aacattctct tcatcaattg ttaaagttcc
     2641 atccaaatca ataagtagag ttttcatgat tttacactta gttttttata atttcatatt
     2701 tattttctat acaaaaagaa caatattaac atattttata taatatatgg aaaaatctaa
     2761 aagaatttta taaaaaagga aaattatgca ctgtccatta tgtcaaaaca aaaacaatca
     2821 aaaagaactt tttaagactt taaatgcttt tacttcaact gtaaagtttg atactaaaca
     2881 atttattaac aaccttgatg atagcaatag tagctgcggg gggggggtat tgtaaaggta
     2941 acaatattat aactctagtg caatgtcaaa attgtggcta tgtatttaat tctacatttg
     3001 acttaaataa aatctcacaa gaatatcaaa acaaaaccta cctttctaga aaaatagtat
     3061 caaaagctat gaataatacg acaaaattaa tcaaagaaaa tttgttaaaa tatatcgaca
     3121 aaaacagtac ttgcttagaa atcgctccag gaagcggaga tatggtaaat gctctcatac
     3181 atgatataaa atttatgtac accattgacc catctttaat ttctttagaa atggaaaata
     3241 ta
//
LOCUS       DAPOLW010000150         3202 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.150, whole genome shotgun sequence.
ACCESSION   DAPOLW010000150 DAPOLW010000000
VERSION     DAPOLW010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3202)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3202)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3202
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.150"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..1270
                     /gene="ciaB"
                     /locus_tag="ROE18_001623"
     CDS             <1..1270
                     /gene="ciaB"
                     /locus_tag="ROE18_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HDX3651784.1"
                     /translation="NLWKFVPYARFFENEILKLEFAFENMIDQLKIFASSEEEKAYIE
                     YFEKLKLAFCEKDEDRVIKAWQEAEFAWMKVKSPLQVGHPLEYYEDNYTHAVALEWDI
                     RIEDENDFDVLKFGNEIKESFEHVYKNIGLEDCELEKEVLSNIEKTQLYICTPMIFYG
                     AELKGLFSAQVVPNDEFVSSKAGKKIFAFINFVYENAKTKPFMKISSEVFDKEFLDFG
                     RNILFYQEKIWKRVYEVSTIGHEFGHIFFIANDTEKTMNQSGFFKNIEEYKATTGGLI
                     NFFYHEQDDLIMPVFHELIKRAIGLISWQRVDEVRPYYTEGLIHLSLLFESEVLIFEN
                     NNLKINFDLGYYEKFKELTLKNYHELAKHYALRLDAKEFLSRFCEIEDNIFLPIMPKC
                     KEFVKFYYDLYEKIGNEIDNSGEFERYKKK"
     gene            1372..1668
                     /locus_tag="ROE18_001624"
     CDS             1372..1668
                     /locus_tag="ROE18_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HDX3651785.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
     gene            1795..2694
                     /gene="cysM"
                     /locus_tag="ROE18_001625"
     CDS             1795..2694
                     /gene="cysM"
                     /locus_tag="ROE18_001625"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HDX3651786.1"
                     /translation="MKVHEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMI
                     TLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEVIDEVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(2701..>3202)
                     /locus_tag="ROE18_001626"
     CDS             complement(2701..>3202)
                     /locus_tag="ROE18_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HDX3651787.1"
                     /translation="FIKNHQNSYDFILKSDLKEETTLKDFKGDKLIIYFGYTYCPDVC
                     PATLSLVGKALKQINNPKAHLLFISLDPNRDNNLSNTNEWLRYFYPKADALIAKDEKT
                     LQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEKGHFYKEINDLNPQEILRELR
                     IFLNSQ"
BASE COUNT         1188 a          345 c          561 g         1108 t
ORIGIN      
        1 aaatttatgg aaatttgttc cttatgcgag atttttcgag aatgaaattt taaaattaga
       61 atttgctttt gaaaatatga ttgatcagct taaaatattt gctagcagcg aagaggaaaa
      121 agcttatata gaatattttg aaaaattaaa attagcgttt tgtgaaaaag atgaagatag
      181 ggttataaaa gcttggcaag aagctgaatt tgcttggatg aaagtaaaat cacctttaca
      241 agtgggacat cctttagaat attatgaaga taattatact catgcggtgg cattagaatg
      301 ggatataaga atagaagatg aaaatgattt tgatgttttg aaatttggta atgaaattaa
      361 ggaaagtttt gaacatgttt ataaaaatat aggacttgaa gattgtgaat tagaaaaaga
      421 agttttatct aatatagaaa aaactcaact ttatatttgc actccgatga tattttatgg
      481 tgctgaactt aaaggtttat tctcagctca agtcgttcca aatgatgagt ttgtaagttc
      541 taaggcggga aaaaaaatat ttgcctttat aaattttgta tatgaaaatg ctaaaacaaa
      601 gccttttatg aaaatttcta gcgaggtttt tgataaagaa tttttggatt ttggaagaaa
      661 tattttattt tatcaggaaa aaatttggaa aagggtttat gaagtatcaa ctataggcca
      721 tgaatttggt catatatttt ttattgctaa tgataccgaa aaaacaatga atcagagtgg
      781 tttttttaaa aatatagaag aatataaagc tactacaggt ggacttataa atttctttta
      841 tcatgaacaa gatgacttga taatgcctgt ttttcatgaa cttataaaaa gagctattgg
      901 acttatttct tggcaaaggg ttgatgaagt tagaccttat tatacggaag gacttattca
      961 tcttagcttg ctttttgaaa gcgaagtatt gatttttgaa aataataatt tgaagataaa
     1021 ttttgattta gggtattatg aaaaatttaa agagctaact ttaaaaaatt atcatgaatt
     1081 ggcaaaacac tatgctttaa gacttgatgc aaaagagttt ttaagtagat tttgtgaaat
     1141 tgaagataat atttttcttc ctattatgcc taagtgtaaa gaatttgtta aattttatta
     1201 tgatttatac gagaaaattg gtaatgaaat tgataatagt ggagaatttg aaagatataa
     1261 gaaaaaataa taaagttttt tgaaaaaaac ttaaaaaaag ctgtttttta cttgatattg
     1321 ttttttaaat atgctaaaat taggcgtttc aattaaaaca aaggagcttt tatgactaaa
     1381 gcagatttca tttcattagt tgctcaaaca gctgggctaa caaaaaaaga cgctactact
     1441 gctactgatg cagttatttc tactattact gatgttttag ctaaaggtga tagcatcagt
     1501 tttattggtt ttggtacttt ttcaactcaa gaaagagctg ctagagaagc tagagtacca
     1561 agcacaggaa aaacaatcaa agttcctgct acaagagttg caaaatttaa ggtaggtaaa
     1621 aaccttaaag aagctgttgc aaaagcaagc ggcaaaaaga aaaaataaaa cttcggctag
     1681 ataaattcta gccttctttc ttaattaatt cagatatttt gtatctttta tttactttat
     1741 ttttttaaac ttttataaaa ctatcattat taaacaaaaa aggatattaa aattatgaaa
     1801 gtacatgaaa aagtaagtga gcttatagga aatactccta ttatacattt gaaaaaattt
     1861 ggtatcaatg tttttgctaa atgtgaattt ttaaatccta gtcattctat aaaagataga
     1921 gcagcttttg aaatgattaa agatgcttta gatagtaaaa aaattaatca agatactaca
     1981 atagttgaag caactagtgg aaatactgga atttctttgg ctatgatttg tgcagatttg
     2041 ggacttaaat ttattgctgt aatgcccgaa tctatgagtt tagaaagaag aaaaatgata
     2101 acactctttg gcgctaggtt agaattaact cctgcaaatt taggaatgaa aggagcggtt
     2161 gataaagcaa atgaaatatt attaaatact ccaaattctt ttatggtttc tcaatttgaa
     2221 aatatttcaa ataaaaatgc gcatcgtaag aatacggctt tagaaatttt aagagatttg
     2281 gataatgaac ttgatatttt tgtagctggt tttggaactg gcggtactat tagtggagtt
     2341 ggggaaatac taaaagaaaa attagaaaaa gtgcatattg ttggagtcga gcctctaaat
     2401 tctccattgc ttagcaaagg tgaagcggga agccataaaa tacaaggaat aggggcgaat
     2461 tttatacctg ctattttaaa taaagaagtt atagatgaag tgatcacagt aagtaatgaa
     2521 gatgctataa atacagccaa agaacttgcc aaaagtggtt taatggtagg tatatcaagt
     2581 ggagcaaatg tatttgccgc aagtatgcta gcaaagaaat ttccagataa aagaatttta
     2641 actatgctaa acgatacggc tgaaagatac ctctcaaccg atctttttgc ttaagtataa
     2701 ttattgagaa tttagaaaaa ttctaagttc tcttaaaatt tcttgtggat ttaaatcgtt
     2761 aatttcttta taaaaatgac ctttttcatc aataagataa agcatattgc tatgtgctat
     2821 agaataaccc ataaaagaat catttagatc tattttttga tattgaacat tatattgttt
     2881 tgttattttt tgaagagttt tttcatcttt tgcaattaag gcatctgctt ttgggtaaaa
     2941 gtatcgtaac cattcgtttg tattgcttaa gttattatct ctatttggat ctaaagaaat
     3001 aaaaagaagg tgagccttag gattattgat ttgctttaag gctttgccta ctaaactaag
     3061 agttgccgga caaacatcag ggcaataagt atatccaaaa tagataataa gcttatctcc
     3121 tttaaaatct tttagggtgg tttcctcttt taagtctgat tttaagataa aatcataaga
     3181 attttgatga tttttaataa aa
//
LOCUS       DAPOLW010000151         3183 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.151, whole genome shotgun sequence.
ACCESSION   DAPOLW010000151 DAPOLW010000000
VERSION     DAPOLW010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3183)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3183)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3183
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.151"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..2048
                     /gene="ccsA"
                     /locus_tag="ROE18_001627"
     CDS             <1..2048
                     /gene="ccsA"
                     /locus_tag="ROE18_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HDX3651788.1"
                     /translation="LRDFVLDRYPGSMSPASYASEITVKNNNENFDYRIFMNNVLDYD
                     GYRFYQSSYDQDEKGTVLSVNKDPGKIPTYIGYFLLCLGMFMNFLNPHSRFRTLARLI
                     NKDTLKHTSVIIFILLLSFGSEKTFAQDLNSTLPVVNTNHAKALATLIVQKSADGRMV
                     PFDTLSREILEKIHQSDSYKGQNSNAVMLSMLVDVDKWQLEPFILMPQNQAVRDAIAN
                     ILEIPSAKYIAYKDFFDENNRYKLQKYVENANRKNPNARGVFDKEIIKLDERANVVNL
                     VFSGELFKFIPVQNNPNNVWLAPFSAVTTLKGDEGHIVLALIQNYFSAVENAFKDGNW
                     IRADEGLKFIKEYQEKIGYKVMPSKTKVEMEIFSNKAEIFVKLAPVYLIAGFLLLILV
                     FSKMVVPNLKISFIFKVVYVLNVLAFVIHTVGLGLRAYLSGHAPWSNGYESMVYIAWA
                     LSLSGIFFSRKSPIALSLTSILSGVVLMVAHLSEMNPQITNLVPVLNSYWLSIHVSVI
                     TASYGFLGLCALLGIFTLFLMCFLKKDGKYNLNILRNITEATRINEMAMIFGLCLLTV
                     GNFLGAIWANESWGRYWSWDSKETWALVSILVYAAILHLRMIPKYCNQFVFALWSMFA
                     YWVIIMTYFGVNYFLTGLHSYAAGEAAQIPNYVYWGFALMVVLAFFARRKRNFVGKL"
     gene            2064..2513
                     /locus_tag="ROE18_001628"
     CDS             2064..2513
                     /locus_tag="ROE18_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651789.1"
                     /translation="MVIFCAALALLLFLGVIAYLITSDGKKTIKKQKTSQKQHVAEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKTSKELDEAAKKKLEFVSA
                     LAANINASAQTVSYLNKELKKIYGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(2516..2592)
                     /locus_tag="ROE18_001629"
     tRNA            complement(2516..2592)
                     /locus_tag="ROE18_001629"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2556..2558),aa:Arg,seq:gcg)
     gene            complement(2645..>3183)
                     /locus_tag="ROE18_001630"
     CDS             complement(2645..>3183)
                     /locus_tag="ROE18_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HDX3651790.1"
                     /translation="NTHFQNLLEHKEGIILKGGFVKNFYKKSFVLRQKINKNLKQINL
                     LSEAFNLLLSEQAQYKKHLKILNLSISILSKNTKEHLARIDTLYTLTNAIKNEKMNKS
                     IYLLSILSSIFLPLNLIVGFFGMNTNNLFFKDSPYGTLYIFSLICCILIVGFIFYYSK
                     KTKEFDLDEGKKAKKQTK"
BASE COUNT         1068 a          387 c          545 g         1183 t
ORIGIN      
        1 atttaagaga ttttgtatta gatcgttatc caggttctat gtctccagct tcttatgcaa
       61 gtgaaattac cgtaaaaaat aataatgaaa attttgatta tagaattttt atgaataatg
      121 ttttagatta tgatggctat agattttatc aaagttctta tgatcaagat gaaaaaggga
      181 ctgttttatc tgtaaataaa gatccgggca aaataccaac ttatataggt tattttctgc
      241 tttgtcttgg aatgtttatg aattttttaa atccacattc tagatttaga actttggcaa
      301 gattaattaa taaagacact ttaaaacata caagtgtgat tatttttatt ttattgttat
      361 cttttggttc tgaaaagact tttgctcaag atttaaattc gaccttacct gtggtaaata
      421 ctaatcatgc taaagctctt gccactttaa tagttcaaaa atcagcagat ggaagaatgg
      481 tgccttttga tacgctatca agagaaattt tagaaaaaat tcatcaaagt gatagctata
      541 agggtcaaaa ttctaacgct gttatgcttt ccatgctcgt tgatgtagat aaatggcaat
      601 tggaaccttt tattttaatg ccacaaaatc aagcagttcg tgatgctatt gcaaatattt
      661 tagaaattcc tagtgctaaa tatattgctt ataaagattt ttttgatgag aataaccgct
      721 ataaacttca aaaatatgtt gaaaatgcaa atcgtaaaaa cccaaatgca agaggagttt
      781 ttgataagga aattataaaa ctagatgaaa gagctaatgt tgtaaattta gtttttagtg
      841 gtgaattatt taaatttatt cctgttcaaa ataatccaaa taatgtttgg cttgcacctt
      901 tttctgctgt aactactctt aagggggatg aagggcatat tgttttggct ttaatacaga
      961 attattttag tgccgtggaa aatgctttta aagatggtaa ttggattaga gctgatgaag
     1021 gcttgaaatt tatcaaagaa tatcaagaaa aaataggata taaagtcatg cctagtaaaa
     1081 ccaaggttga aatggaaatt ttttctaata aggctgaaat tttcgttaaa ctcgctcctg
     1141 tatatttaat tgcgggtttt ttactcttga ttcttgtttt ttctaaaatg gtcgtaccga
     1201 atttaaaaat ctcttttata tttaaagtgg tatatgtttt aaatgtttta gcttttgtaa
     1261 ttcatacagt aggtcttgga cttcgtgctt atttatcagg tcatgctcca tggagtaatg
     1321 gctatgaaag tatggtgtat atagcttggg cattgtcttt gtcgggtata tttttctcca
     1381 gaaaaagtcc tatagccttg tcattaactt ctattttatc tggtgttgta ttaatggttg
     1441 cgcatttaag cgaaatgaat ccgcaaatta caaatcttgt tcctgtgctt aattcttatt
     1501 ggcttagtat tcatgtatct gttattactg ctagttatgg atttttagga ctttgtgcct
     1561 tacttggtat ctttacattg ttcttaatgt gttttcttaa gaaagatgga aaatataatc
     1621 ttaatatttt gagaaatatt acagaggcta caagaattaa tgaaatggca atgatttttg
     1681 gactttgttt gcttactgta ggaaattttt taggagcaat ttgggcaaat gaaagttggg
     1741 ggagatattg gagttgggat tctaaggaaa cttgggcttt agttagcatt ttggtttatg
     1801 cagcaatttt gcatcttaga atgattccaa aatattgtaa tcaatttgtg tttgctttat
     1861 ggagtatgtt tgcttattgg gttattatta tgacttattt tggagtaaat tactttttaa
     1921 caggacttca ttcttacgct gcaggcgaag cggctcaaat tcctaattat gtttattggg
     1981 gatttgcatt gatggtggtt ttagcttttt ttgcaagaag gaagcgaaat tttgtgggca
     2041 aactttaaat gaaccatatt tttttggtta ttttttgtgc tgctttagcg cttttattgt
     2101 ttttaggcgt gattgcttat cttattacaa gtgatggcaa aaaaacaatt aaaaagcaaa
     2161 aaactagcca aaagcagcat gtagctgaaa agactaaaaa atttgataca gacttagata
     2221 aaatgataat tgctgcttcc gatgttaaac taacggatat tgaattaaaa gaacttgcca
     2281 aactttatgt gcagacacat aaacttggtt caaaaacttc taaagaatta gatgaagcag
     2341 caaaaaagaa actagaattt gtttctgctt tggctgcaaa tattaatgca agtgcacaaa
     2401 cagtaagtta cttaaataaa gaacttaaga aaatttatgg atcttacaaa aaagaaattg
     2461 atgcttacga gcatatggga ttagctaaaa gaaaaattaa agaagataaa taatatggtg
     2521 cgctcaagag gattcgaacc tctggccttt tgaaccgcaa tcaaatgctc tatccagctg
     2581 agctatgagc gcaaaaataa gttaaaatta tatataaata ttcttaaaat aagcaaaatt
     2641 ttgcttattt tgtttgtttt ttagcttttt taccttcatc taaatcaaat tctttagtct
     2701 tttttgaata ataaaatata aaacctacaa tcaaaataca gcaaatcaaa gaaaaaatat
     2761 aaagtgtacc ataagggcta tctttgaaaa aaagattatt agtattcatt ccaaaaaatc
     2821 ctacgatcaa atttaaaggc aagaaaatag aagaaagtat acttaaaaga taaatacttt
     2881 tattcatttt ttcattttta attgcatttg ttaatgtata aagagtatca attcttgcta
     2941 gatgttcttt ggtgttttta cttaagatgc tgatggataa atttaaaatt tttaaatgtt
     3001 ttttatattg tgcttgttca ctaagcaaaa gattgaaagc ttcgcttaga agattaattt
     3061 gctttagatt tttgttgatt ttttgtctta acacaaagga ttttttgtaa aaatttttaa
     3121 caaaaccacc ttttaagata ataccttctt tgtgttctaa aaggttttga aaatgagtat
     3181 ttt
//
LOCUS       DAPOLW010000152         3108 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.152, whole genome shotgun sequence.
ACCESSION   DAPOLW010000152 DAPOLW010000000
VERSION     DAPOLW010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3108)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3108)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3108
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.152"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..256
                     /locus_tag="ROE18_001631"
     CDS             <1..256
                     /locus_tag="ROE18_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HDX3651791.1"
                     /translation="RRKKQKIIIKLKAKANEFLNYAEVITKIKTWYKKEEFYTLEESL
                     DFVSLNLKKDFPNLTNLNIKIFKPHIIKNATVGVKLKKKY"
     gene            335..1006
                     /gene="hsrA"
                     /locus_tag="ROE18_001632"
     CDS             335..1006
                     /gene="hsrA"
                     /locus_tag="ROE18_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HDX3651792.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVTKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKDQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            1119..1364
                     /locus_tag="ROE18_001633"
     CDS             1119..1364
                     /locus_tag="ROE18_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HDX3651793.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            1364..2824
                     /locus_tag="ROE18_001634"
     CDS             1364..2824
                     /locus_tag="ROE18_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HDX3651794.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTCEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFYNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDNYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSTNEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(2821..>3108)
                     /locus_tag="ROE18_001635"
     CDS             complement(2821..>3108)
                     /locus_tag="ROE18_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651795.1"
                     /translation="KKTMVYKNNNVSRDFTMIFQRFLDKNNQLVIFDHANKRYTMIIG
                     NSNVLLESVEIPEEQTIKHTEKTEKNFDSFFEENKKRIQNLIEQRQKGKKS"
BASE COUNT         1180 a          439 c          441 g         1048 t
ORIGIN      
        1 aagaaggaaa aaacaaaaaa ttattatcaa gcttaaagct aaagcaaatg aatttttaaa
       61 ttatgcagaa gtaattacca aaattaaaac atggtataaa aaagaagaat tttacaccct
      121 tgaagagtct ttagactttg taagcttaaa tttaaaaaaa gattttccta atttaaccaa
      181 tcttaacata aaaattttca aaccccatat aataaaaaat gctacagttg gggttaaatt
      241 gaaaaaaaaa tattaatttt tttttaaaga tatctaaaca tttacttaag ctatgatata
      301 attctttaaa tttttcttaa taaggataga acaaatgaga attttagtta tagaagatga
      361 gattagccta aataaaacaa ttatagacaa tcttaatgaa tttggttatc aaactgattc
      421 ttctgaaaat tttaaagatg gagaatactt tatcggcatt agacattatg atttagtttt
      481 agcaaactgg actttacctg atggagatgg agcggaactt gttaacacta ttaagcataa
      541 atctccaaga acttcagtta tgattatgtc ttcaaaaaca gacaaagaaa cagaaatcaa
      601 agctttgaaa gctggagctg atgattttgt tacaaaacct ttagattttg atattctact
      661 cgcaagaatt gaagcaagac taagacttgg cggaaccaat gttattaaaa ttgaagactt
      721 agttattgat ccagatgagg aaaaaattac ttataaagat caagatatag aacttaaagg
      781 aaaacctttt gaagttttaa cgcacttagc aagacattcg gatcaaattg tatccaaaga
      841 acaactttta gatgccatct gggaagaacc tgagctagta actccaaatg ttatcgaagt
      901 agctatcaat caaattcgtc aaaaaatgga taaaccatta aatatatcta ccatagaaac
      961 agttcgtcgt agaggatacc gtttctgctt ccctaaaaaa tcttaacaat tttgcacctt
     1021 cggtgcaaaa aatttatctt tatttctatt tttatatttt atttaagttt ggttattgta
     1081 taaactaaaa ttatttttta aatttttgaa aggttatgat gtctctttta attacaaaag
     1141 actgcgtatg ttgtgatgct tgcagagaag aatgtcctga tgaagctatt tatgaaaata
     1201 gtccaattta tgtaatagac cctgatcttt gttcagagtg cgttaatgat ttttcagagc
     1261 ctgcctgtat tgttgcttgc ccatatgaat gtatcattcc tgatcctgat aatgtagaaa
     1321 ctatagaaga attaaaactc aaacatagag atagagaatt ttaatggcaa aaaaaacagc
     1381 cgttgttgat cttggctcaa actccattag aatggtgatt tttgaaaaaa cttctagata
     1441 tggtttttat acaacttgcg aatacaaacg caaagtaaga cttggagaaa atgcttataa
     1501 taatggcaaa attctccaag aagaagccat gcaaagagcc gaagatgcct tagctttttt
     1561 caaacaatgc gctttaaagc ataagtgcaa aaaaatattt atagtaggca catcagcctt
     1621 aagagatgcc ccaaattcaa aaaatttcat taaaagaatc aaagataatc tgtctttaaa
     1681 tatacgctgt atagatggaa aaagcgaaag ttacttaggt ggtcttgcag ctctaaattt
     1741 attaagtcct tttaaggatg gaaccacttt agacataggt ggtggttcta gtgaattgtg
     1801 tttaataaaa aataatagaa ttatttcttg catatctctt gatattggca ctgttaggct
     1861 aaaagaattg ttctatgata ctggaaaaat ggattcttta gaagaattta taaaaccaat
     1921 tttagaacaa attcctaaag aattttacaa tcaaaacctt attgcaatag gtggaagctt
     1981 aagagcaata tctaattcca tcatgcaaaa aaattcctat ccactgaaaa atttacatga
     2041 ttttcgctat atgctagatg aagaaaaagg acatatttta aaaattttta attcaaactt
     2101 agactcttta atcaattttg gcataaaaaa ggatcgtttt gataccatta aagagggtat
     2161 atttattttt ttaaagattg cggaaaaaat aaaagccaaa caagttatca cgagtggggt
     2221 tggaatcaga gaaggagttt atttgcaaga tttacttcgt cctaaaatca catttccacc
     2281 aaatttcaat cccagtttaa aatgtttgca agataaattt ttacaatcaa aacaaaaaaa
     2341 taaaactcca cattttgctc tgcaaatttt tacaaccctt aaaaatcttc ataaacttaa
     2401 cgataactat aagcatactt tactaaatgc tgccaaatta tgccatattg gagaatattt
     2461 aaatttctat tttgctaatg aacactctgc tcattttgta ctaggtggat taaattatgg
     2521 attttcgcat aaagaaaaag ctttaattgc tagtattatt aagcttaatg gaaaaaaagt
     2581 taatccttat aatcttgaac cctataaaca acttttaccc aatattcata ccatttcatg
     2641 gcttaatttt attttgtgct tagctaaaac tttaagcaca aatgaagata agattgattt
     2701 tgcttttgca aacaatactc tttatatata tcaagaaaac aaaattctta atttacccaa
     2761 agatgagctc aaaaaaattg caaaaccagc taccatagca ttagcaatca atcaaaaaat
     2821 ttaagatttt ttaccttttt gacgctgctc tataagattt tgaattcttt ttttattctc
     2881 ttcaaaaaaa gaatcaaaat ttttctctgt tttttctgta tgttttattg tttgttcctc
     2941 tggaatttca acactttcta aaagtacatt ggaattacct attatcattg tataacgttt
     3001 attagcgtga tcaaaaataa caagttgatt atttttatct aaaaatcttt ggaaaatcat
     3061 agtaaaatct ctagaaacat tgttattttt ataaaccata gtcttttt
//
LOCUS       DAPOLW010000153         3087 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.153, whole genome shotgun sequence.
ACCESSION   DAPOLW010000153 DAPOLW010000000
VERSION     DAPOLW010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3087)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3087)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3087
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.153"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..562
                     /locus_tag="ROE18_001636"
     CDS             <1..562
                     /locus_tag="ROE18_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HDX3651796.1"
                     /translation="FSYKISRHFDYYENLLLWCKIFLKNESFMPYHGKNEAFALLFPM
                     EKIFEDYVAYMLKKVNPAQDIKVQNNGKYLISKNDENCFMLKPDLYIENKMILDTKWK
                     IPNDSEDEKKQGIEQSDLYQMFAYACKFKIYDIKLVYPLCEKTQDLQRKIAEKFFVFK
                     ASEHLYFKEQGQKDIKVQVCFAPLPF"
     gene            complement(551..1354)
                     /locus_tag="ROE18_001637"
     CDS             complement(551..1354)
                     /locus_tag="ROE18_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDX3651797.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKRYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLIFLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKKLGFI
                     MVLASFLSMIFCVLGLILSYYLNLSSGACIIAVACFGFLMHLIGKFLKR"
     gene            complement(1347..2201)
                     /locus_tag="ROE18_001638"
     CDS             complement(1347..2201)
                     /locus_tag="ROE18_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HDX3651798.1"
                     /translation="MLFFEISNLNYAYDNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQRKEIGYVPQHTLANPNFCPRVLEIVLMGLVSKKIFGF
                     YGKKDKEKAMQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEENCDSKKLCEQEFTRRNLKKTEFKKENFCL
                     KFSKENNA"
     gene            complement(2214..3068)
                     /locus_tag="ROE18_001639"
     CDS             complement(2214..3068)
                     /locus_tag="ROE18_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004275847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HDX3651799.1"
                     /translation="MFYTFTQAKNLEQEQNTSSNLVSVSIAPQAFFVKKIAANTLDIN
                     VILPPNSNEHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQNFPKLQVVNMQKN
                     IALIQTHDTHEHSHEHEHHEHEHFDPHTWLDPILVQTMALNIYDTLIQKYPQNENLYK
                     ENLDKFLAELDSLNLQIASKLEKLKNREFVVYHPSWTYFAKRYNLTQIPVEILGKEPK
                     SKDLQKLITLMKDKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDHLSYDWENELLKT
                     ADAFSHNL"
BASE COUNT         1108 a          454 c          451 g         1074 t
ORIGIN      
        1 ttttagttat aaaatttcaa gacattttga ttattatgaa aacttgcttt tgtggtgtaa
       61 aattttctta aaaaatgaaa gttttatgcc ttatcatggt aaaaatgaag cttttgcttt
      121 gctttttcct atggagaaaa tttttgaaga ttatgtagct tatatgctaa aaaaagtaaa
      181 tccagctcaa gatattaaag ttcaaaacaa tggaaagtat ttaatctcaa aaaatgatga
      241 aaattgtttc atgttaaagc ctgatttata tatagaaaat aaaatgatcc tagataccaa
      301 atggaaaatt ccaaatgata gtgaagatga gaaaaaacag ggtatagaac aaagcgattt
      361 gtatcaaatg tttgcttatg cttgcaaatt taaaatttat gatattaaac ttgtgtatcc
      421 tttatgtgaa aaaactcaag atttacaaag aaaaatcgca gaaaaatttt ttgtttttaa
      481 ggcaagcgaa catttgtatt ttaaagaaca agggcaaaaa gatataaaag tgcaagtgtg
      541 ttttgcacct ttaccttttt aaaaatttgc ctatcaaatg cattaaaaaa ccaaaacaag
      601 ctacagctat gatacaagca ccgcttgaga ggttaagata atagctaagt ataagtccta
      661 aaacacaaaa aatcatactt aaaaaacttg ctaaaaccat gataaagcca agttttttgg
      721 tgaaattttc agcaataaag cttgggatac taagtaaagc cataaccaaa ataagcccta
      781 caaggcgtat agaaataact atacaaaaag ccataagggc gattaaaaga taatgaaaaa
      841 aacttgtatt gataccacga acttttgcaa attccgcatc aaagcttaat gcttcaaatt
      901 gtctataaaa taaaaagatc aaaagcacca ccacgctatc aaccaaagcc ataagccata
      961 aatcttgtgt tcctacagcc aaaatgctcc caaaaagata agccattaaa tctgtgttat
     1021 aactagggct taaatcgatt aaaataatcc caacagccat tccaaaagcc cagattacag
     1081 cgataatact atcacttctg tgttcatagc gtttagctaa aaaagctact aaaaaagcca
     1141 aaaataaagt aaatattccc gtgcttaata aaataggcaa agagaaataa aaagctatac
     1201 ctataccacc aaaagcccca tgtgttatac ctccagccat agaaaaaagg cgatttatca
     1261 tcaccaaagt acctatgatc ccacaagcta tactgactaa aatcgctcct agtaaagcgt
     1321 tttgaaaaaa ggtgaaattt aaaatttcaa gcattatttt cctttgaaaa ttttaaacaa
     1381 aaattttctt ttttaaattc tgtttttttc aaatttcttc ttgtaaattc ttgttcgcat
     1441 agttttttac tatcgcaatt ttcttcatcg caaaaacaag tatttaaact catttctaca
     1501 tcacaaaaat gagagtggtt ttcgtataag tgttttaaaa atgaactttt ttctttttct
     1561 ttagtgttgg tatgcaagaa aagttctttg tttaaatgtg caattttatc gctataagct
     1621 aatacaaggt tgatatcgtg acaaatgagt aaaattccca tgcctttttg gtgcaaagag
     1681 cttagaagtt caaaaatttg tatagcagac ttgttatcaa cgcttgcggt aggttcatct
     1741 aaaataagca ttttgcattc actagctaag gctcttgcga taaaaacacg ttgcctttgt
     1801 cctccgctta aagaatcaat ggttttgttc caaaattttt ccattcctac actttttaaa
     1861 gcttgcatag ctttttcttt atcttttttc ccataaaaac caaaaatttt tttacttaca
     1921 agtcccataa gaacgatttc aagtactctt gggcaaaaat taggattggc tagagtgtgt
     1981 tgaggaacat agcctatttc ttttctttga agagctttga aatggatttc atttttggat
     2041 tttaaaagtc ctaagataag ttttacgagt gttgattttc ctgcaccatt tggacctatg
     2101 atagagagaa agtctttatt gtcatagcta agattgatgt tttttaagat gatttcatta
     2161 tcataagcgt agtttagatt agaaatttca aaaaaaagca tcaaaaaacc tgattataaa
     2221 ttatgagaaa aggcatcagc agtttttaaa agctcatttt cccaatcata agataaatga
     2281 tctattttgt aaatttttgc atcacattct ttagcaagtg tttttgctgc attttcaggg
     2341 aaaccatttt gaacaaaaat gacttttaaa tttttatctt tcattagagt gataagtttt
     2401 tgcaaatctt tgctttttgg ttccttgcct aaaatttcta caggaatttg cgtaagatta
     2461 tagcgttttg caaaatatgt ccaagaagga tgataaacta caaattctct attttttaat
     2521 ttttctaatt ttgaggcaat ttgtaaattt aaactatcta attctgctaa aaatttatct
     2581 aaattttctt tatataaatt ttcattttgt ggatattttt gaattaaggt gtcataaata
     2641 tttaaagcca tagtttggac taaaatagga tctagccaag tatgaggatc aaaatgctca
     2701 tgttcgtggt gttcatgctc atgagagtgt tcgtgtgtat catgagtttg aatcaaagct
     2761 atgttttttt gcatatttac aacttgaagt tttggaaaat tttgtttaaa tttatccgta
     2821 aaaacttttt caaattctaa gcctatagtg aaataaatat cacttttttc aagttttttc
     2881 atagtacttg gtttaaattc aaaattatgc tcattgctat ttgggggcaa aataacattg
     2941 atatctagag tatttgcagc tattttttta acaaaaaatg cttgaggtgc tatactgaca
     3001 ctaactaaat tgctactagt attttgttct tgctctaaat ttttagcttg tgtgaaagta
     3061 taaaatatcc ctaaagataa gataaat
//
LOCUS       DAPOLW010000154         3030 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.154, whole genome shotgun sequence.
ACCESSION   DAPOLW010000154 DAPOLW010000000
VERSION     DAPOLW010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3030
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.154"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            51..1373
                     /locus_tag="ROE18_001640"
     CDS             51..1373
                     /locus_tag="ROE18_001640"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HDX3651800.1"
                     /translation="MNKFRTFPQINTLIEDESLKSYPFYIKAFFCKKVVAKLKENFFQ
                     DEISKDKLLLEIKKEIKTFYRKDLQSVINASGVVIHTNLGRSVIHEELYEACKDIICN
                     YSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSLCYDKEVIS
                     SRGELVEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYEQAINENTALILKTHKSNF
                     ALMGFHSEVNIKDLHELAKEKELLSYYDLGSGWCENLNEKLIKNEPKIRKLVQECDIL
                     SFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYLQKDYE
                     KIITLKLLNDDLSFIEKKALRVQKELKFQTQLKKSKSLVGGGSMPDKSLDTYILTFQG
                     DALKLQTRFRKENIIGRIENDEFVLDFRTIRENELQKLILTINQMENL"
     gene            1370..>3030
                     /gene="selB"
                     /locus_tag="ROE18_001641"
     CDS             1370..>3030
                     /gene="selB"
                     /locus_tag="ROE18_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HDX3651801.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSVCLFVVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCENIEQKSVEILEELKNLDYPILKVFHTSIKNNQGIEELKNY
                     LYTIENKENDEELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQKELIV
                     KNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGYFKAFKECDALVKAKNLQ
                     NSKMIFCVGSRQIECKINILKKLENDEFFVHFSFDKNVFLSFDEAFILLQNNRVIGGG
                     KVLNPLSEPLKKEQKNKFLMFLKNKDFKAAFSFLKDAHKYGFGLLSSYQRFKLSHQKA
                     LKLAKELNQVFVDEKNLNVYHLQSLEEIKNFIKFILEKNPYAMLSAHSLALRITWASE
                     NFCELGLKEMSNLLDFQNGIYFKKGIDFEKLQEKNNNQMYEILKKQGIKPEAPYNLYD
                     FLELDRKSGDNILKKLTQKGLVVRLSHNLFIEKQALEKLMQECLN"
BASE COUNT         1226 a          362 c          471 g          971 t
ORIGIN      
        1 attttataaa ttctatgtta aaataaccaa atattttctt aaggcttaag atgaacaaat
       61 ttagaacttt tccacaaatt aacactctta ttgaagatga gagtttaaaa tcctatcctt
      121 tttatatcaa agcatttttt tgtaaaaaag ttgtcgcaaa actaaaagaa aattttttcc
      181 aagatgaaat ttctaaagat aaactacttt tagaaatcaa aaaagaaatc aaaacttttt
      241 accgcaaaga tttacaaagt gtgattaatg caagcggagt ggttatacac acaaaccttg
      301 gtagaagtgt aatccatgaa gaactttatg aagcgtgtaa agatatcatt tgtaattatt
      361 ctaatgtaga gtttgattta gaaaatggaa aaagaggctc tcgctatgct ttggtactag
      421 aaaaacttaa aatgcttttt gaatgtgaag atgctttagt ggtcaataac aacgctgcgg
      481 cagttttttt agtgcttaat tctctttgtt atgataaaga agtcataagc tcaagaggag
      541 aacttgtaga aattggcgga agttttcgtg tgcctgaagt gataaaagct gcaggtgtaa
      601 agctttgcga agttggaact agtaataaaa cacacttaaa agactatgaa caagctatca
      661 atgaaaatac cgctctaatt ttaaaaaccc acaagtctaa tttcgctctt atgggttttc
      721 acagtgaagt aaatataaaa gatctacatg aactagcaaa agaaaaagag cttttgagtt
      781 attatgatct aggttctggc tggtgtgaaa atttaaatga aaagctgatt aagaatgaac
      841 ctaaaatcag aaaactcgtg caagaatgtg atattttaag ttttagcgga gataaacttt
      901 ttggcagcgt acaagcgggc attatacttg gaaaaaaaga actcatagaa aaacttaaac
      961 aaaatcaact tttaagaatg ctaagagtgg ataaattaac cctatctttt ttaaacgaaa
     1021 gcttaaaagc ttatttacaa aaagattatg aaaaaattat taccttaaaa cttttaaatg
     1081 atgacttatc ctttatagag aaaaaagctt taagagtgca aaaagaatta aaatttcaaa
     1141 cccagcttaa aaaaagcaaa agtttagtag gaggaggttc tatgcctgat aaaagtttag
     1201 atacttatat actaactttt caaggagatg ctttaaaact acaaactcga tttagaaaag
     1261 aaaatatcat aggacgcatt gaaaatgatg aatttgttct tgattttaga actatacgag
     1321 aaaatgaact tcaaaaactt attcttacaa tcaatcaaat ggaaaactta tgaaatctgt
     1381 tattatagga accgcaggac atattgatca tggaaaaact tcactcatta aagctttaaa
     1441 tggttttgaa ggcgatagtt taaaagaaga acaagaaaga caaatcacca ttaatttaag
     1501 tttttcaaat cttaaattaa aagataaaaa catttctttt atcgatgttc caggacataa
     1561 agatttggtt aaaactatgg taagtggagc ttttggcttt agtgtttgtt tatttgtcgt
     1621 agatattaac gaaggtttaa aagaacaaag tttagaacat ttagaaattt taaaaattct
     1681 tgatattaaa aatatcattt tagtgcttag caaatgtgat ctttgtgaaa atatagagca
     1741 aaaaagtgta gaaattttag aagagttaaa aaatttagat tatcccattt taaaagtatt
     1801 tcacaccagt ataaaaaata atcaaggcat agaagaatta aaaaattatc tttataccat
     1861 agaaaacaaa gaaaacgatg aagaactgat ttttcattat tatatcgata gagttttttc
     1921 tctaaaaggc ataggaactg tcgttacagg cagtcttaat gaaggaagca tcactttaaa
     1981 tgaaaaaatc atctgtttag acactcaaaa agaactcatt gttaaaaata tacaaaacca
     2041 cgatactaat ttagagcaaa tcaaagcttg taaccgtgtg gctttaagtt taaattgtga
     2101 ttataaagag ttgaaaaaag gttatttgct aagtaaaaaa ggttatttta aagcctttaa
     2161 agaatgtgat gctttagtta aagcaaaaaa tttacaaaat agcaaaatga ttttttgtgt
     2221 aggttcaaga caaatagaat gcaaaataaa tatattaaaa aaactagaaa atgatgaatt
     2281 ttttgtgcat tttagttttg ataaaaatgt atttttaagt tttgatgagg cttttatttt
     2341 attacaaaat aatcgtgtta taggcggtgg taaggtttta aatcctttaa gcgaaccttt
     2401 aaaaaaagaa caaaaaaata aatttttaat gtttttgaaa aataaagatt ttaaagcagc
     2461 tttttctttc ttaaaagacg cacataaata cggctttggt ttgctttcaa gctatcagag
     2521 atttaaactc tctcatcaaa aagcattgaa attagcaaaa gaattaaatc aagtatttgt
     2581 tgatgaaaaa aatcttaatg tatatcattt acaaagccta gaagaaatta aaaatttcat
     2641 caaattcata cttgaaaaaa atccttatgc catgctttca gcacattctt tagctttaag
     2701 gattacttgg gcaagtgaaa atttttgcga acttgggctt aaagaaatgt caaatttatt
     2761 ggattttcaa aatggaattt attttaaaaa aggtatagat tttgaaaaac ttcaagaaaa
     2821 aaacaataac caaatgtatg aaattttaaa aaaacaaggt attaaacccg aagctcctta
     2881 taatctttat gattttttag aacttgatag aaaaagcgga gataatatac tcaaaaaact
     2941 tacccaaaaa ggcttggttg taagactttc acacaatctt tttatagaaa aacaagctct
     3001 tgaaaaactt atgcaagaat gtttaaattt
//
LOCUS       DAPOLW010000155         2997 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.155, whole genome shotgun sequence.
ACCESSION   DAPOLW010000155 DAPOLW010000000
VERSION     DAPOLW010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2997)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2997)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2997
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.155"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..337)
                     /locus_tag="ROE18_001642"
     CDS             complement(<1..337)
                     /locus_tag="ROE18_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002924533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651802.1"
                     /translation="MTYEDFSNRLKQLDLTREDFSKLVGMNYNSVANWKSKEIPIWVD
                     TWLEKYEEEKTFSNVKGKITINKTTMENTRELLKQKYLMLNLRKPQDCLKLSYQYHQV
                     KVNTYFDYYE"
     gene            487..1155
                     /locus_tag="ROE18_001643"
                     /pseudo
     CDS             487..1155
                     /locus_tag="ROE18_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865349.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
     gene            1233..2267
                     /locus_tag="ROE18_001644"
     CDS             1233..2267
                     /locus_tag="ROE18_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5309 family protein"
                     /protein_id="HDX3651803.1"
                     /translation="MALPSMGHTSPATENVKLKQSIYETIIKIGATETPILNKIGTSK
                     VTNPLTHSWITDTFEEPKKNANLELSKFVGETKNTAQKTTNAIQIFITEAMVSKALLK
                     ANQYGGNEMEYQIGKKTKEHKMDMEYALFGLGRDSDVKKSVFKDYVQAQEATSGEMAG
                     LFHYIAKGKDSFSDGKRGNVLAFDETGDWSGTATELTEDKLNQILQTIWNSGVTPKDV
                     FLGADLKGAINKFATRILGNETKLAGQVVSLETDFGTVNFHMHRLLSPKYGLGDVLIA
                     GDFEYMKHGLYIPTMIEDVPTDITAKAKRFYTQSTLEVRNADAFAIGVGLTSGNNAKA
                     KAVLKAAKGA"
     gene            2267..2671
                     /locus_tag="ROE18_001645"
     CDS             2267..2671
                     /locus_tag="ROE18_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002796938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651804.1"
                     /translation="MLCATAKKLIIAKVKNSYKMIEDDEVLKAYFMEAFYYILSKCVP
                     SVLLKNVEQGEKVFRQVRNNHFLIIPDEPDFDNEKEHLMIDETLSFAVINYVCYLITR
                     CEEKDFLALCDKIIYEYIANDGKELDDERTWL"
     gene            2652..2846
                     /locus_tag="ROE18_001646"
     CDS             2652..2846
                     /locus_tag="ROE18_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651805.1"
                     /translation="MKEHGCNCNFTKKINRALSYKDYVQSINSADFIAYLDDKKWLLA
                     MDDLLFFCEKRIKDSDYYEG"
     gene            2849..>2997
                     /locus_tag="ROE18_001647"
     CDS             2849..>2997
                     /locus_tag="ROE18_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651806.1"
                     /translation="MGTSLNELKTGREKLEIINQVLARINSISEAIDNTRLDEVVGLK
                     QACES"
BASE COUNT         1167 a          353 c          509 g          968 t
ORIGIN      
        1 tttcgtaata gtcaaaataa gtattaactt ttacttgatg atattgataa cttagcttta
       61 aacaatcttg aggttttctt aaatttaaca ttaagtattt ttgtttcaaa agttctcttg
      121 tattttccat cgttgtttta tttatagtta ttttgccttt tacattagaa aatgtttttt
      181 cttcttcata tttctcaagc caagtatcaa cccagatggg aatttctttt gatttccaat
      241 ttgcaacaga gttatagttc atgcctacca attttgaaaa atcttcccta gtaagatcta
      301 gctgttttag tctgtttgaa aaatcttcat aagtcatctt aaatcctatt ttaattataa
      361 atgtatttta tcatattatt tttaataaaa attaaaataa ttattgactt attttaattt
      421 ttagtgtaaa attaaaataa gtttttaatc tataattaaa aactaatcaa aacaataagg
      481 aaaaaaatgg aaaggttagc tgtaattaac ggcgtggatg tagagttgga agtggtagat
      541 aatgcagtat ataccacttc tttaagcgtg gctgaagtat tcaataaaaa ccacaaaaat
      601 attatacgaa aaataaatga atttccaaag gataatttta ctaagctcaa ttttgagccg
      661 agtaaatata ttgatagcac gggtagagtt ttaccttgct acaaaatcac tcgtgatggt
      721 ttttctttgc ttgttatggg ttttacaggc taaaaagctt ataaatggaa aatcgagttt
      781 atcaaagctt ttaatgaaat ggaaaaaaga ctaagaaata ttgaatatga gaagcacgat
      841 aagttagctt ttcatcaaag cttaggttat aaatctcaat taaaacagca aaagcaaaaa
      901 tacgaaaatg agattaaagc tttaaagtat gatttagaac agagtaaaaa caattttaag
      961 gataaattaa attgtatatt ggctaaaaat ggtttatatg cctttgattt taaaactttt
     1021 aaaaattatg ccttaaagct agaaaaaatg ttaaaagatt taaaagatga tgaaaacaaa
     1081 gagaataaac tacttttaag aatgcaaaat gatttcttag aatgtttaga actttataaa
     1141 agtgtaaata tctaaatcat ttcaaaacac actatatttg aaatagtcat ttttggaaaa
     1201 atccttaaaa ctaaactaag gagaattcaa aaatggcttt accttcaatg ggacatacct
     1261 cacccgcaac agaaaatgtt aagttaaaac aatcaatata tgaaacgatt attaaaattg
     1321 gagctactga aacaccaatt ttaaataaaa taggtacttc aaaggttaca aatcctttaa
     1381 ctcatagttg gattactgat acttttgaag aaccaaaaaa gaatgcaaat ttagagttaa
     1441 gtaaatttgt aggtgaaaca aaaaacacag cccaaaaaac tacaaatgct attcaaatat
     1501 tcattactga agccatggta tcaaaagctt tattaaaagc aaatcaatat ggtggaaatg
     1561 aaatggagta tcaaataggc aaaaaaacca aagaacataa aatggatatg gaatatgctt
     1621 tatttggtct aggcagagat agtgatgtaa aaaaatcagt tttcaaagat tatgttcaag
     1681 cacaagaagc aacaagtgga gaaatggctg gactttttca ttatatcgct aaaggaaaag
     1741 atagcttttc tgatggaaag cgtggaaatg tattagcttt tgatgaaaca ggagattgga
     1801 gtggaactgc aacagaacta acagaagata aacttaatca aattttgcaa accatttgga
     1861 atagcggagt gacgcctaaa gatgtctttt taggagctga cttaaaagga gctatcaata
     1921 aattcgctac aagaatttta ggcaatgaaa caaaactagc aggacaagta gtgagccttg
     1981 aaacagattt tggaacggta aatttccata tgcatagatt attaagccct aaatatggtt
     2041 tgggtgatgt tttaattgct ggggattttg agtatatgaa acatgggctt tatattccta
     2101 ctatgattga agatgttcca actgatatta ctgcaaaagc aaaaagattt tatacgcaaa
     2161 gcactttaga agtaagaaat gctgatgctt ttgctatagg cgtgggatta actagtggaa
     2221 ataatgcaaa ggctaaagcg gttttaaaag cagcaaaagg tgcataatgc tttgtgctac
     2281 ggctaaaaaa ctcattatcg ctaaagttaa aaattcttac aaaatgatag aagatgatga
     2341 agttttgaaa gcctatttta tggaagcatt ttattatatt ttatcaaaat gtgttcctag
     2401 cgttctttta aaaaatgtag agcaaggcga aaaagttttt aggcaagtta gaaataatca
     2461 ttttttgatt attcctgatg agcctgattt tgacaatgaa aaagaacatt taatgataga
     2521 tgaaacactt agttttgctg tgattaatta tgtttgttat ttgattacaa gatgcgaaga
     2581 aaaagacttt ctggcattat gtgacaagat aatttatgag tatatagcta atgatggcaa
     2641 ggagcttgat gatgaaagaa catggttgta attgtaattt cacaaaaaaa attaatagag
     2701 ctttgagtta taaagactat gtgcaaagta taaatagtgc tgattttata gcttatttag
     2761 atgataaaaa atggctttta gccatggatg atctgctttt cttttgcgaa aagagaatta
     2821 aagatagtga ttattatgaa ggttaaaaat gggaacaagc ttaaatgaat taaaaacagg
     2881 tagagaaaaa cttgaaatca taaatcaagt tttagctaga ataaacagca tttcagaagc
     2941 aatagacaat acaagacttg atgaagttgt aggcttaaaa caagcttgcg aatcttt
//
LOCUS       DAPOLW010000156         2841 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.156, whole genome shotgun sequence.
ACCESSION   DAPOLW010000156 DAPOLW010000000
VERSION     DAPOLW010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2841)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2841)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2841
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.156"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            77..1099
                     /locus_tag="ROE18_001648"
     CDS             77..1099
                     /locus_tag="ROE18_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDX3651807.1"
                     /translation="MNLSFKIFDISNTQRSKAKKVQGKKYEIFLNENEHSLITPKVSF
                     KEILRYYYLYPKNAIPSFKLPFFKPDLSGFSTPHITWLGHSSLFISFKEYKILIDPIF
                     NTHASPISFINKAFKNAPVYNINDFNEIFAVIITHSHFDHLDAKSVKALKDKAKFFIT
                     PLKVGNYLKSYGVSEKKIIELDWWSGIEFGDLKIMATPAQHSSSRGDGKNKTLWASFV
                     MEFLSVDKRVFFSADGGYFTHFKKIGEYFGSFDLACLESGQFNIAWPYSHSFPEQILK
                     EAKDLNAKAVMPIHWGRFLAGTHAWNEVVKFLYENLDLPLITPKMGEAYEVGAKFKQD
                     FWWKEE"
     gene            1169..1510
                     /locus_tag="ROE18_001649"
     CDS             1169..1510
                     /locus_tag="ROE18_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDX3651808.1"
                     /translation="MKIIQWNGAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHVQVLSGKIWFEVEKEKFELNALDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     VQRVNAVLKKP"
     gene            complement(1560..2729)
                     /locus_tag="ROE18_001650"
     CDS             complement(1560..2729)
                     /locus_tag="ROE18_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HDX3651809.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QTIKNAAISAIEKGCGKYTAVAGIPEVLKAIQTKFKKDNNLDYETNEIITNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFIEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSKDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGECDKDIEKMRQAFEKRRNLALDILKQIPNISVYKPEGAFYLFVNIQKIEK
                     DSMKFCQKLLEQEKVAVVPGVGFGMDGYFRLSYATSDELIKKGLERIANFIKNYK"
BASE COUNT          945 a          407 c          475 g         1014 t
ORIGIN      
        1 ctaaaaaatt aacaataaaa taaaattaat ctaaaaactt tttagatata atcttaataa
       61 acataaaagg aaaaatttga atttatcatt taaaatcttt gatatttcca atacacaacg
      121 atcaaaagct aaaaaagtgc agggtaaaaa atatgaaatt tttcttaatg aaaatgagca
      181 cagtcttata actcctaaag tgtcttttaa agaaattttg aggtattatt atctttatcc
      241 aaaaaatgcc atcccttctt ttaagttacc ttttttcaag cctgatttga gtggttttag
      301 caccccacat attacttggc ttggccattc ttcgcttttt ataagtttta aagagtataa
      361 aattttgatt gatcctattt ttaacactca tgcttcgccc atttctttta tcaacaaggc
      421 ttttaaaaat gctcctgttt ataatataaa tgattttaat gaaatttttg ctgtgattat
      481 cacgcattcg cattttgatc atttagatgc taagagtgta aaagctttaa aagataaggc
      541 taaatttttt atcactcctt taaaagtggg aaattatcta aaaagctatg gggtgagcga
      601 gaaaaaaatc atagagcttg attggtggag tggaatagaa tttggtgatt taaaaatcat
      661 ggcaacacct gcacagcaca gttcaagtag gggagatggt aaaaacaaaa ccctttgggc
      721 ttcttttgtg atggaatttt taagtgtaga taagagagtg ttttttagcg cagatggagg
      781 gtattttaca cattttaaaa aaataggtga gtattttgga agttttgacc tagcttgtct
      841 tgaaagcgga caatttaata tcgcttggcc atattcacac tcttttcctg agcaaatttt
      901 aaaagaggca aaagatctta atgcaaaggc tgtcatgcct atacattggg ggagattttt
      961 agcaggaact catgcatgga atgaggtggt aaaatttctt tatgaaaatt tagatttacc
     1021 ccttatcaca ccaaaaatgg gcgaggctta tgaagtagga gctaaattta aacaggattt
     1081 ttggtggaaa gaagaataaa ttaacacaag tttataattt atattttggc ttttgctata
     1141 gttttgtaaa actaaaaaag gagattttgt gaaaatcatt caatggaatg gagcggaatt
     1201 tagcccaaaa gaagtgaaaa tcaatgtttt aattgacaat gaaaaaggta aagaaattca
     1261 aattttatta gctaaagaca gtgtgatgaa agagcataaa gctccttttg ctatacatgt
     1321 tcaagtttta agcggtaaaa tttggtttga agtggaaaag gaaaaatttg aattaaatgc
     1381 tttagatatg ataagcctag aggcaaatgt agcacattct ttaggtggat tagaaaattc
     1441 tataataaga ttgagtttaa ataaatcaga tagtgttcaa agggtaaatg ctgtgcttaa
     1501 aaagccttga ttttataagg ttttaatttg cctaaataat tctaggcttt aacctagaat
     1561 tatttatagt ttttaatgaa atttgctatt ctttctaaac cttttttgat aagctcatcg
     1621 cttgtagcat aagaaagtct gaagtatcca tccattccaa aacctacacc tggaacaacg
     1681 gcaacttttt cttgttcaag taacttttga caaaatttca tagaatcttt ttctattttt
     1741 tgtatattta caaaaagata aaaagcacct tctggtttat aaacactgat atttgggatt
     1801 tgtttaagta tgtctaaggc taagttacgg cgtttttcaa aggcttgacg cattttttct
     1861 atatctttat cacattctcc atttaaagca ggaatggctg catgttgagt gatagagcaa
     1921 atatttgaag tgctttgtcc ttgaagtctt ttaacggctg aaattagggc tttatttttg
     1981 cttgccatat agccaaaacg ccatcctggc atagctccac atttgctaag tccgttaatg
     2041 gtcacagtgc gttttaaagc atctttgctt acacttgcaa aagctacaaa atcaaaacca
     2101 tcatagcgaa gtttttcata catttcatca cttaaaacag taatttgcgt tccttctaaa
     2161 actttagcaa tttgagttaa ttcttcttta gaataaatcg atcccacagg atttgaagga
     2221 gaatttagca tcaaaacttt ggttttagct gtgatagctt tttttaattg ttcagcggta
     2281 attttaaagc cattttcttc taagccttct ataaatacag gttttccacc tgcaaatttt
     2341 accatttcag gatagcttac ccagtaagga ctagggataa tcacttcatc atctttttct
     2401 actaagcatt ctatacattc aaaaagagag tgttttgcgc ctacattggt gatgatttca
     2461 tttgtttcat aatcaagatt attatctttt ttaaatttgg tttgaatagc ttttaatact
     2521 tcaggaattc ctgcaacagc agtgtatttt ccacatcctt tttcaatagc acttatagcg
     2581 gcatttttga tggtttgtgg tgtgtcaaaa tcaggttcac ccgctgaaaa actaatgata
     2641 tcctcgcctt tggctttaag ttcattggca agtgcagtga tagctaaagt gatagattct
     2701 tctaaaactt gagatctttt tgtaagcatt tttcaatcct tgataatttt tgtttaattt
     2761 tagcagaaaa ttgcattttt acaataaatt taatttaaaa atgagttgta aatttcaata
     2821 aatgtgaaaa tttgtattaa t
//
LOCUS       DAPOLW010000157         2816 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.157, whole genome shotgun sequence.
ACCESSION   DAPOLW010000157 DAPOLW010000000
VERSION     DAPOLW010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2816
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.157"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            85..1290
                     /locus_tag="ROE18_001651"
     CDS             85..1290
                     /locus_tag="ROE18_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HDX3651810.1"
                     /translation="MKNLLIIGAGGVSRVATVKCAMNSDTFSKITLASRTKSKCDEIA
                     AFIKERLGVQIETAQIDADDSNAVVELIKKTEAQILLNVALPYQDLSLMDACIKAGID
                     YIDTANYEHPDLAKFEYKEQWARNDEFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKRIRFFMTFGQSYLTHMKCLENVGMLGIKPVI
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(1303..1993)
                     /locus_tag="ROE18_001652"
                     /pseudo
     CDS             complement(1303..1993)
                     /locus_tag="ROE18_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881173.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            complement(2062..2724)
                     /gene="sodB"
                     /locus_tag="ROE18_001653"
     CDS             complement(2062..2724)
                     /gene="sodB"
                     /locus_tag="ROE18_001653"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HDX3651811.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
BASE COUNT          967 a          434 c          479 g          936 t
ORIGIN      
        1 tgatttagaa gagaaaataa gttttgatat tatcaatttt tagtttaaat ttgataaaat
       61 caaaaaaatt tttgaaggat aggaatgaaa aatcttttaa tcataggcgc aggtggggta
      121 agtcgtgtgg ctactgtaaa atgcgcaatg aattctgata cttttagtaa aatcacttta
      181 gctagtagaa caaaaagcaa atgtgatgaa atcgctgctt ttatcaaaga gcgtttaggg
      241 gttcaaattg aaacggcgca aattgatgct gatgatagca atgcagttgt agaacttatc
      301 aagaaaacag aagcacaaat tttactcaat gtggctttgc cttatcaaga tttgagttta
      361 atggatgctt gtataaaagc agggattgat tatatagata cggcaaatta tgaacatcct
      421 gatttagcta aatttgaata caaagagcaa tgggcgagaa atgatgagtt taaacaagca
      481 ggaattttag gacttttagg aagtggattt gatcctggtg taactaatgt tttttgtgct
      541 tatgcacagc aaaatttatt tgatgaaatt tcttatatag atattttaga ttgcaatgca
      601 ggtgatcatg gctatgcttt tgcgacgaat tttaaccctg aaatcaatct gcgtgaggtt
      661 tctgctaaag ggcgttattg ggaaaatggc aagtggatag aaacgcagcc tatggaaata
      721 aaaatggagt gggattatcc agaagtagga gtgaaagata gctatttgct ttatcatgaa
      781 gaacttgaaa gcttggtaaa aaatatcaaa ggtttaaaaa gaatacgctt ttttatgact
      841 tttggacaaa gttatttaac tcacatgaaa tgtcttgaaa atgttggaat gctagggatt
      901 aaacctgtga tacaccaagg taaagaaatc attcctatag aatttttaaa aaccttgctt
      961 cctgatcctg caagtttagg accacgcact aaaggttata ccaatatagg ttgcgtgatt
     1021 cgtggtaaaa aagatggaaa agacaaacaa gtttatattt ataatgtttg caatcatgaa
     1081 gaatgttaca aagaaactgg cgcgcaagct gtgagctata ctacaggtgt tcctgctatg
     1141 ataggtacga aattaatcgc taaaggaatt tggcaaggaa aaggcgtgtt taatatggaa
     1201 gaatttgacg ctaagccttt tatggaagag ctgaattctc aaggacttcc ttggaagatt
     1261 atcgaaatga ctccaagctt aggagagtaa gtgctagagc acttactttt gtcctatata
     1321 aataaagtgc tccacactgc cttcaaaatt atacagatta attaattcat aatctcccca
     1381 aaataaaggt ttaaaaggtt taaaatcttc ttttaattct tctatgtctt tagtaaagcg
     1441 tatatatgaa gaaccactca atctaccact tggacatcct tttacttcac gcaagctatt
     1501 atccataagt tctcctcttt catacatact atagccttta tcgctcatca tggttgcaaa
     1561 tataatagct ccttcattgc atagttcata aaattcttgc acagcttctt taaaagcttg
     1621 ttttgtaaga taatataagc tttgatttgc aaatataaaa tccatttttg tattgaagag
     1681 ttttttaaag ctagaattag gagatatgat gtgaaaattt ttagaatcta agcaaggatc
     1741 tttttcccaa acttttttta aactaggaac tatatcaatg ccataaggct ctataccccc
     1801 ccccggttat atttttaaaa tacttagaat gcactccatt tccacaacca aaatcaagta
     1861 attttccact tgttttgctt agtttgtatt ttaagattct ctcgtaaaat cttataacat
     1921 gaccatcagg atattgaagt ccataacctt ctttgtcata tttttgagta tatgcagata
     1981 aagaattatc catttttgcc cctttttgtg tagaatgttg acttaatgtc aaaatccatt
     2041 ctagcacaaa aaggattaaa gttattttac agggtgaagt tcatttgcat aaaagctaac
     2101 tgatcccatg ccttctttta aagcccattc gtaagctttt gcaacaaatt cccagttaat
     2161 atgagcatag aatttttcta aataagcagg gcgtgcattg cgatgatcta cataataagc
     2221 atgttcccaa acatctacaa caagtaaagg aactttatct tcagtaattg gtgtagctgc
     2281 gtttgaagta cctacaaatt ctagtttttg atttttagta ttataaacta accaaaacca
     2341 tcctgaacca aaaactcctg tagcgccttt gataaattca gctttgaaat tttctaaaga
     2401 tccaaattct ttttctagtg ccgcttgtaa attagcatct atactttgac atgaaccgcc
     2461 acagccacag cctgtacttg gcttaatgca atcaaaataa aaatcatgat tataaacttg
     2521 agctgcgtta ttaaatacgc ccccatttga agttttgata atacttacaa gatctttacc
     2581 tgcaaattca gtatctttaa taagattatt tagatttgta acataagtat tgtgatgttt
     2641 tccatgatga tagctaaaag tttcagcact caaaaaatca ccaaaagcat tggtatcata
     2701 aggtaatttt cttaattcaa acataatttc tcctttattt ttagtttgat attgaaaata
     2761 ttaccataat aatattaaaa agagtaaaaa tatcttaaaa gcttagtggg taaaat
//
LOCUS       DAPOLW010000158         2645 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.158, whole genome shotgun sequence.
ACCESSION   DAPOLW010000158 DAPOLW010000000
VERSION     DAPOLW010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2645)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2645)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2645
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.158"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..785)
                     /locus_tag="ROE18_001654"
     CDS             complement(<1..785)
                     /locus_tag="ROE18_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HDX3651812.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIEKI
                     IIPGADIKDLPYAATIAHKYKNIFFAAGVHPYEIDNYDEKILRQYLCDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREVNHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEDGFYFGIGGVLTFKNAKKLVEILPKIPKDRLLLETD
                     APYLTPEPYRGKRNEPLLTQFVANKMCEVLNLSRKELLEICFN"
     gene            complement(776..2020)
                     /gene="cbrR"
                     /locus_tag="ROE18_001655"
     CDS             complement(776..2020)
                     /gene="cbrR"
                     /locus_tag="ROE18_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HDX3651813.1"
                     /translation="MNKKILIIDDNKMLGKLLAKKIQMTLDYEVDIAFGFAEAKELMN
                     NDYFLAFVDLCLPDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKE
                     SETCIDEIISSIVKLNQYAKTKVIVAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMS
                     YLNDNNDVKLIIADVNMPVISGFELLTQVRERFSDDELGVILLGDHNDSFEANSFKNG
                     VNEYLFKPLSKESFNCRLDRCLSYMDDKKFLSTYNVLDLVSGVKNYNALIDGIDDYFN
                     EIATKDEEFAFAFLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAE
                     KICILLKNISQERAIKIFSRIRVNIKKAGVLVNLDEVFFTASIGVVFGKSGDKIDSLV
                     DKASKILSQAKDNGKDRVEVCS"
     gene            complement(2126..>2645)
                     /locus_tag="ROE18_001656"
     CDS             complement(2126..>2645)
                     /locus_tag="ROE18_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA recombination protein RecN"
                     /protein_id="HDX3651814.1"
                     /translation="KNLKKLEKCLNNYLKDLYMKDASLTLKENEKISILGKDEIMLDI
                     NLAHLKNLSSGELNRLRLAFIATECNILNAGKGILFLDEIDANLSGKEAMSIAKVLEE
                     LSKFYQIFAISHLPQLSSKAHNHFLVEKNGEESKVKKLDQEERIKELARMVSGELVSD
                     EAIEFAKTLFKN"
BASE COUNT          907 a          492 c          279 g          967 t
ORIGIN      
        1 ttgttaaaac aaatttctag aagttctttt cttgataaat tcaatacttc acacattttg
       61 tttgctacaa attgagttaa caaaggttca tttcttttac cgcgataagg ctctggagta
      121 agatatggag catcagtttc aagtagtagt ctatcttttg gaattttagg taaaatttca
      181 actaatttct tagcattttt aaaagttaaa actcccccaa taccaaaata aaatccatct
      241 tcaaaaagag ttagtaaatg ttcgcttgca ttaaagcagt gtaaaactcc tcctacaaga
      301 tccttagaat acccatgtaa aatctcataa gtatcatgat ttacttctct tgagtgaatg
      361 ataacaggtt ttttaaattc aatagcaagt tcaagctgtg cgataaaaat ctttttttga
      421 ttttcttttt ctttttgaat ttcttcagca agatcacttt taaaacggaa ataatcaagc
      481 ccacattcac ctacagctac acacttttca tcgcataaat actgccttaa aattttctca
      541 tcataattat caatttcata aggatgcacc cctgctgcaa aaaaaatatt tttatattta
      601 tgagcaattg tagctgcata aggcaagtct tttatatcag caccaggtat gatgattttc
      661 tctataccat tcttaaaagc acgatttaaa gtttcatcta aatcatcttt aaatgcttca
      721 ctgtctagat ggcaatgcgt atcaacaatc cttaaaccat cttgaaaatc aagatttaag
      781 aacatacttc aactctatcc ttgccgttat cttttgcttg agacaatatt ttacttgctt
      841 tatcaaccaa agaatcaatc ttatctccac tttttccaaa aaccacgcct atagaagctg
      901 taaaaaagac ttcatctaaa ttaactaaaa caccagcttt ttttatattt actcgtatac
      961 gagaaaagat tttaatcgct ctttcttgag atatattttt aagcaaaata caaatttttt
     1021 ctgcactata tctacctaca agatctcttc ctttagtttc attaactatt tcattggcgc
     1081 agattttaat tacttcatca ccaacttcac ggccgtattc atcgttaatc atttgaagat
     1141 tatctatatc taagaaagca aaagcaaatt cctcgtcttt tgttgctatt tcgttaaaat
     1201 aatcatctat tccatcgatt aaagcattat aatttttaac cccagataca agatctaaaa
     1261 cattataagt gcttaaaaat tttttatcat ccatgtaaga taaacaacga tctaagcgac
     1321 aattaaaact ttctttgctt aaaggcttaa acaaatactc attaactcca tttttaaaag
     1381 aattcgcttc aaatgaatca ttatgatccc ccaaaagaat cacacctaat tcatcatcac
     1441 taaaacgttc tcttacttga gtcaaaagct caaaaccgct aattactggc atattgacat
     1501 ctgctataat aagcttaaca tcattattat catttaaata actcattgct tcttcgccat
     1561 gagccgcagc taaaacatta aattgtcttt gagtaagtat ttttttaatt tcattacgtt
     1621 caggtagctt gctcatagct acaatcactt tagtttttgc atattgatta agttttacaa
     1681 tagaactaat aatctcatca atgcaagttt cactttcttt aaaaatataa tctaatatat
     1741 ctttatccat aaatttttct ttagtagcct tatcaccact agccgtaaga acaatagcag
     1801 gaattttctt ttctataaca taatccacaa cttcaccatt tggggcatct ggcaagcata
     1861 aatccacaaa agctaaaaaa taatcattat tcattaactc cttagcttca gcaaaaccaa
     1921 aagcaatatc tacctcataa tctaaagtca tttgaatttt tttagccaaa agtttgccga
     1981 gcattttatt gtcatcaata attaaaattt tcttattcat agtgtgtaaa atacctttat
     2041 atctaaaatt ttttattata tttgtttcaa aagaaaggaa atttttatag ttatatattt
     2101 taacatagca aaataaaaaa tccgcttaat tcttaaataa ggtcttagca aattcgatcg
     2161 cttcatcact aacaagctct ccacttacca tcctagcaag ttctttaatt ctttcttctt
     2221 gatcaagctt ttttacctta ctttcttcac catttttttc aactaaaaaa tgattatgtg
     2281 ccttagagga aagttgaggc aaatgagaaa tagcaaaaat ttgataaaac ttagaaagtt
     2341 cctctaaaac cttagctata ctcatagcct cttttccact taaatttgca tcaatttcat
     2401 ctaaaaataa tatccctttg cctgcattta aaatattaca ttctgtggct ataaaagcaa
     2461 gtcttaagcg atttaattca cccgaactta aattttttaa atgagctaaa ttaatatcta
     2521 gcattatctc atctttgcct aaaattgaaa ttttttcatt ttctttaagc gtcaaacttg
     2581 catctttcat ataaagatct ttaagataat tatttaaaca tttttctaat tttttaaggt
     2641 ttttc
//
LOCUS       DAPOLW010000159         2612 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.159, whole genome shotgun sequence.
ACCESSION   DAPOLW010000159 DAPOLW010000000
VERSION     DAPOLW010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2612)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2612)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2612
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.159"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..660
                     /locus_tag="ROE18_001657"
     CDS             <1..660
                     /locus_tag="ROE18_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HDX3651815.1"
                     /translation="NEINKIILNQLKQNTSEIDKNTSIFKEIFEELENIRRSLTTISE
                     SFTNFTNYLEYNLYQSEEKMNLEKEVQSSLKNIDQLNSILDLISGIAEQTILLSLNAG
                     IEAARAGKLGRGFAVVADEVRKLSENTQMGLGEMEGAIKLVIQTIQSIAKSSNSSTQE
                     MNFIRDKTNEFSKIISNLINSGKEISDKLEQRSNVSEDFEKNVNQLKCYEDVLAKLNQ
                     Y"
     gene            complement(713..1066)
                     /gene="rplT"
                     /locus_tag="ROE18_001658"
     CDS             complement(713..1066)
                     /gene="rplT"
                     /locus_tag="ROE18_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HDX3651816.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGIELDRKILADLAMND
                     AAAFAKIAEAAKKAL"
     gene            complement(1160..1351)
                     /gene="rpmI"
                     /locus_tag="ROE18_001659"
     CDS             complement(1160..1351)
                     /gene="rpmI"
                     /locus_tag="ROE18_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HDX3651817.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRGLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            1507..>2612
                     /locus_tag="ROE18_001660"
     CDS             1507..>2612
                     /locus_tag="ROE18_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651818.1"
                     /translation="MTINSANPYQNLTLSNPLQNSSALNLIKDSKALDQEGNENSLEQ
                     LSYIFNNTTYASEFGFRINEEGFFDKDLNKIANIPESYDINIKSVRSIAKELAKQDEN
                     LNYNKIDLPYLLNSYHSSLKSINSEFLQDDNAYLSRDLISKLSSGFSTDNGEFLGQIS
                     RIYNNQEEIDLALSNITNLNTLMLDNKITNFHFDKAIENTSSNEILKPYLTKNAEVSK
                     SGLLMNFIYHDIKTQNEKEFNFFMKPATLELSSHQNLQKILKGETDIEDYIKKENEKK
                     MSFDLYLYINGVDKKTSTQDKLSVFFQQYINYQKDMDLREFANSSSIFQIYIDQNRND
                     FDALKKQYQNQSQDTQRLEEANQLRSSSIENFLDR"
BASE COUNT         1015 a          386 c          344 g          867 t
ORIGIN      
        1 aatgagatta ataaaataat cttaaatcaa ctcaaacaaa atacatcaga aattgataaa
       61 aatacaagta tatttaaaga aatttttgaa gaacttgaaa atataagaag aagtcttaca
      121 actattagtg aaagttttac caatttcact aactacctag aatacaacct ttaccaaagc
      181 gaagaaaaaa tgaatttaga aaaagaagta caatcttctt tgaaaaatat agatcaatta
      241 aatagtattt tagatcttat ttcagggatt gctgaacaaa ctatcctttt atctttaaat
      301 gcaggtatag aagctgctag agctggaaaa cttggtcgtg gatttgcagt tgtagctgat
      361 gaagttagaa aactttcaga aaatacccaa atgggtctag gtgaaatgga aggagctatc
      421 aaattagtta ttcagaccat acaatccatt gcaaaaagtt ccaattctag tactcaagaa
      481 atgaatttta taagagataa aactaatgaa ttttccaaaa tcatttcaaa tcttataaat
      541 tcaggtaaag aaatttcaga taaattggaa caaagaagca atgtcagcga agattttgaa
      601 aaaaatgtaa atcaactcaa atgttatgaa gatgttctag ctaaattaaa tcaatactga
      661 aaaaattaag aatttcaaga atcaaaaatc ttgaaattct tatactaaaa aatcaaagtg
      721 ctttttttgc agcctctgca atttttgcaa aagcagcagc atcattcata gctaaatctg
      781 ctagaatttt tctatcaagt tcaatgcctg cttttttaag accattgata aatcttgaat
      841 aacttaaatc attgagtctg caagcagcat tgatacgcac aatccaaaga cgacggaagt
      901 ctcttttttt gcggcgtcta tcacgataag catagactag acttctttct aattgttctt
      961 ttgcttttct aaaatgtttg cggcgtccac tataaaaacc acgcgctaat tttaaaactt
     1021 ttttatgtct gcggcgtcta acaacacctg tttttactct tgccattttt atttcctttc
     1081 ataaagtggc gtccaaattt ggagcttacc cttgaaattt tatctcagag gggagtttga
     1141 atgactttta gtcaaaaact taaattccta gcattttttc aacagctttt acatttgtgc
     1201 tatgcacata tttagctgtg cgaagaccac gcattctttt tgcaggtttt ttagtcaaaa
     1261 tatgacttct aaaagctgag cctcttttga ttttattttt acctactttg aagcgtttaa
     1321 ctgcgctttt aacgcttttc atctttggca tacgctttcc ttatttagat aaatttttat
     1381 ttttcaaatt aaaagaaaag ctaaatacta tcaaattttt tctaattttt gactgaattt
     1441 aatttttaaa aaacttggca caccttttgc ttataaaaaa tcagcaatat tttggaaaga
     1501 tttaaaatga ctataaattc ggcaaatcca tatcaaaatt taaccttatc taatcctttg
     1561 cagaatagct ctgctctaaa tttgattaaa gatagtaaag ctttggatca agaaggaaat
     1621 gaaaatagct tagaacaatt aagttatatt tttaataata ccacttatgc tagtgaattt
     1681 ggatttagaa tcaatgaaga aggttttttt gataaagatt taaataaaat tgcaaatata
     1741 ccagaatctt atgatatcaa cattaaaagt gttagaagca tagcaaaaga actcgcaaaa
     1801 caagacgaaa atttaaacta caataaaatt gatctacctt atcttttaaa tagctatcat
     1861 agttcattaa aatctataaa ttcagaattt ttacaagatg ataatgctta tttaagtcgc
     1921 gatcttattt caaaactatc atcaggtttt tcaacagata atggagaatt tttaggccaa
     1981 atttcaagaa tttacaacaa tcaagaagaa attgatttgg cattaagcaa tatcacaaat
     2041 ttaaatactt taatgttaga taataaaata actaattttc attttgataa agccatagaa
     2101 aacacttctt ctaatgaaat tttaaaacct tatttaacta aaaatgcaga agtatcaaaa
     2161 tctggtcttt taatgaattt tatctaccat gatataaaaa ctcaaaacga aaaagaattt
     2221 aactttttta tgaaacctgc cactttagaa ctaagctctc atcaaaattt acaaaaaatt
     2281 ctcaagggcg aaacagatat agaagattac atcaaaaaag aaaatgaaaa aaagatgagt
     2341 tttgatcttt atctttatat taatggcgta gataaaaaaa caagcactca agacaaacta
     2401 tctgtatttt ttcaacaata tattaactac caaaaagata tggatttaag agaatttgca
     2461 aattcaagtt caatatttca aatttatatc gatcaaaatc gcaatgattt tgatgctctt
     2521 aaaaaacaat atcaaaacca aagccaagat acgcaaagat tagaagaagc aaatcaacta
     2581 cgttctagct ctatagaaaa ttttttagat cg
//
LOCUS       DAPOLW010000160         2602 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.160, whole genome shotgun sequence.
ACCESSION   DAPOLW010000160 DAPOLW010000000
VERSION     DAPOLW010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2602
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.160"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            78..305
                     /locus_tag="ROE18_001661"
     CDS             78..305
                     /locus_tag="ROE18_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDX3651819.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLETAMKD"
     gene            complement(302..1372)
                     /locus_tag="ROE18_001662"
     CDS             complement(302..1372)
                     /locus_tag="ROE18_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDX3651820.1"
                     /translation="MTAYLHIGTTNTGNQEKQGFLMQNEEKLLQKAYIYPKSLRVANR
                     HWALVDMVLELVQKEDILKKESVLSHITNERLLRAIENFKSESALHKDKKFIFSAEGI
                     VWDFSTKKHVEILEKIMRELGFTQIYIIVYFRDTLGYLNSHCSQDHKNNMGYYSADFA
                     PQDHPRKYIFDYEWICKTHAEVFGEENLIVRLLREDYVGGTLLKDFVYHLGLEWDESF
                     VLKQTKNESFNLLGMELMSRLNQKDLKQDNLNSLLFMARRKFEGSKEKRLKFAVQKDI
                     AKAYVDYFASSLEWVKNKYFPHKNSLFTPVNWEEYEQNYTLTHMLSKDWDDVADFIAQ
                     IIVSKNEIISSLKEQLELARKD"
     gene            complement(1394..2602)
                     /locus_tag="ROE18_001663"
     CDS             complement(1394..2602)
                     /locus_tag="ROE18_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDX3651821.1"
                     /translation="MNQTFEIDSCDDVELGIKRTSKLEYRISYDDEKDIKAIVFIVGG
                     FGANANISFLDFDREYIAKNFDVVVVHVFYHCFCARQSIDQKYNPKLIPNQDDLERVN
                     GILKNINLGHLSVNKDNFEQIIPLIEQKVNKMKQAGLVDESQKIELSCDFIPPNGDYQ
                     NYGIMAAIDHINALKDLVKRFPKFADLPKIYGGGSYGGYLSLLIAKIAPWYVDGVIDN
                     SGVCLPFLACILGREMNQGEFYFEGSGYRLYCFVYKYWNRNMNSSYYFGDENYLIRAV
                     LNSNHLQIQSNLNKNTIFVSYHSIQDMGAPVQNKIELYKCYQELGYDATLHLIKDEND
                     IDGRFVKSLEHGLRMTDRALFRKELPLMLEKLQGRKSFMQENSISYPCGNKVFVFKDL
                     EDKFELEMIN"
BASE COUNT          915 a          457 c          290 g          940 t
ORIGIN      
        1 gtaaaattga tagaaaggtt ttaaaagaac ttgtttaaat aaatatttta taatttcaaa
       61 aaactaaagg agaaaaaatg caagaaatca aacaattttt tatcaatata gaaagaacag
      121 atatcaatga gagtatggaa aatctagtaa gtgaagattt tatcgatagt atcgatatca
      181 tggctttggt tgccgaaata gaaaaatttt ataaaaaacc cttaaaagca gaatttatca
      241 cacctgaaaa ttttgaaagc tttgaaaata tcaaaaaaat gcttgaaact gcaatgaaag
      301 actaatcttt ccttgcaagt tcaagctgtt cttttaaaga actgatgatt tcatttttag
      361 aaacaataat ttgtgctata aaatccgcca catcatccca atctttactt agcatatggg
      421 ttaaagtata attttgttca tattcttccc aattcacagg agtaaaaaga gaatttttat
      481 gcgggaaata tttgtttttt acccattcaa gtgaagaagc aaaataatcc acataagctt
      541 tagcaatatc tttttgcact gcaaatttta atcttttttc tttgctgcct tcaaattttc
      601 ttcttgccat aaaaagcaaa gaattaagat tatcctgctt taaatctttt tgatttaatc
      661 ttgacataag ctccattcct aaaagattaa aactttcatt tttggtttgt tttaaaacaa
      721 aactctcatc ccattcaagt cctaaatgat aaacaaaatc cttaagtaaa gtccctccta
      781 cataatcctc ccttagaagt cttactatca aattttcttc tccaaatacc tcagcatgag
      841 ttttgcaaat ccattcatag tcaaaaatat attttctagg atgatcttgc ggagcaaaat
      901 cagcagaata ataccccata ttgtttttat ggtcttgaga acaatgtgag tttaaataac
      961 ccaaagtatc tctaaaatac acaataatat aaatttgagt aaaacctaac tctctcataa
     1021 tcttttctaa aatttctaca tgttttttgg tagaaaaatc ccaaactata ccctcagctg
     1081 aaaaaataaa ttttttatct ttatgtaaag cactttcact tttaaaattt tctatagctc
     1141 taagaagtct ttcatttgtg atatgactta aaacactctc tttttttaaa atatcttctt
     1201 tttgaaccaa ttctaaaacc atatccacca aagcccaatg cctatttgcc actctaagac
     1261 tttttgggta aatataagct ttttgcaaaa gcttttcttc gttttgcatc aagaagcctt
     1321 gtttttcttg atttcctgta ttagtagttc ctatatgtaa atatgctgtc attttatatc
     1381 ctttatcttt attttaattt atcatctcta actcaaattt atcttctaaa tccttaaaca
     1441 caaatacttt attcccacaa ggataagaga tagaattttc ttgcataaaa gattttcttc
     1501 cttgtagttt ttcaagcatt aaaggaagtt cttttctaaa taaagcccta tcagtcattc
     1561 taagtccatg ctctaaactt tttacaaatc taccatctat atcattttca tcctttatta
     1621 aatgtaaagt tgcatcatat cctaattcct gataacactt ataaagttct attttatttt
     1681 gcactggcgc acccatatct tgtatactat gatagcttac aaaaatggta tttttattta
     1741 aatttgattg aatttgaaga tggtttgaat ttaaaactgc tctgattaaa taattttcat
     1801 caccaaaata ataagaagaa ttcatatttc tattccagta tttatataca aaacaataaa
     1861 gtctataacc acttccttcg aaataaaatt ccccttgatt catttctctt cctaaaatgc
     1921 acgccaaaaa tggcaagcaa acacctgaat tatcaatcac accatccaca taccaaggag
     1981 ctatctttgc tatgagtaaa gataggtatc ctccataaga ccccccccca taaatttttg
     2041 gtaaatctgc aaattttgga aagcgtttaa ctaaatcttt taaagcattg atatgatcaa
     2101 tagctgccat aatgccatag ttttgataat ctccattggg tgggataaaa tcacaagaaa
     2161 gttctatttt ttggctttca tcaaccaaac ctgcttgttt cattttatta actttttgct
     2221 ctataagagg aataatttgt tcaaaattat ctttattaac cgataaatgt cctaaattaa
     2281 tattttttaa aatgccattt acacgctcta aatcatcttg attgggaata agctttggat
     2341 tatacttttg atcaatactt tgtcttgcac aaaaacaatg ataaaaaaca tgtaccacta
     2401 caacatcaaa atttttagca atatattccc tatcaaaatc taaaaaagaa atatttgcat
     2461 tagctccaaa accacccact ataaaaacta tggctttgat atctttttca tcatcataac
     2521 ttatgcgata ttcaagctta ctggttcttt taatacctag ttctacatca tcacaagaat
     2581 caatttcaaa ggtttggttt at
//
LOCUS       DAPOLW010000161         2592 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.161, whole genome shotgun sequence.
ACCESSION   DAPOLW010000161 DAPOLW010000000
VERSION     DAPOLW010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2592)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2592)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2592
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.161"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..1183
                     /locus_tag="ROE18_001664"
     CDS             <1..1183
                     /locus_tag="ROE18_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651822.1"
                     /translation="VRNEWMKTFNLKNIDDEYIPNIPKEAKIALKDREIKLTKGSLLK
                     LIEKDRIKYIPHIKETLESPQAILKDKDDFIFIKNIDNQTYFTSIGKDYETHLTIISN
                     SPKKQNNIKNKMKNAEVVYYNNARALPTSRASSETKQVSFSNENSTQAKPKKNLMDDI
                     KENIKNKEVKKKNKKSVKQRLDEKIQNDKKASEDILKRYDNFLKENKDYNFDFLDNMN
                     LNTVEYNLTRQMIINAKESTNKGVKKDIPSALRGKIEQELNIQPLKEFGENYTEYYHD
                     GKGALQKLLIEKQGQVAGAFHRKDLGDIDLVWGDGNFGLSHIVNRREEDFIKQGLNKI
                     EAKNKALNFIKEIENIINNGNVKKGNNRAFIDVKNSRVMVALDYKGKDKKWIITAYNF
                     Y"
     gene            1673..1900
                     /locus_tag="ROE18_001665"
     CDS             1673..1900
                     /locus_tag="ROE18_001665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651823.1"
                     /translation="MDLEKDIFELDISALVRDSIEEALEYEESNNIGENSNHCDEETK
                     KYYLGLANNDKEALLKKKFLIDEFIKDNAFE"
     gene            1893..2363
                     /locus_tag="ROE18_001666"
     CDS             1893..2363
                     /locus_tag="ROE18_001666"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651824.1"
                     /translation="MSDKITKKDAFLTKENIDLIVQQIKEFCELHKEKYKTSYIKGKY
                     VKDALIKTIRHYNSFLKEFNFILGTVDFYRTYAWFGYFLALEFPYYQTRFKIARTAIF
                     RIIKELEEKKGIVFTDVTKIEIIKFLQYELEGKGELGVGKNGLYLLGRIVSTLD"
BASE COUNT         1097 a          244 c          418 g          833 t
ORIGIN      
        1 tgttagaaat gaatggatga aaactttcaa tcttaaaaat atcgatgatg aatatatccc
       61 taatatacca aaagaagcaa agatagcttt aaaagataga gaaataaaac ttacaaaagg
      121 aagtttacta aagctgattg aaaaagatag aattaaatac ataccacata tcaaagaaac
      181 tttagaaagc ccacaggcaa tcttaaaaga taaagatgat tttattttta ttaaaaatat
      241 agataatcaa acttatttta caagtatagg taaagactat gaaacgcatt tgactataat
      301 tagcaattcg ccaaagaaac aaaataatat aaaaaataaa atgaaaaatg ctgaagtagt
      361 gtattataat aatgcgagag ccttaccgac atctagggca tcttcagaga caaagcaagt
      421 gtcgttctct aacgaaaatt ctacccaagc taagcctaaa aaaaacttaa tggatgatat
      481 aaaagagaac attaagaata aagaagtaaa gaaaaagaat aaaaaaagcg taaaacaaag
      541 gcttgatgaa aaaatacaaa atgataaaaa agctagtgaa gatattctaa aaagatatga
      601 taattttcta aaagagaata aagattataa ttttgatttt ttagataata tgaatttaaa
      661 tactgttgaa tacaacttaa ctagacagat gataatcaat gccaaagaaa gcacaaataa
      721 aggtgtaaaa aaagatattc caagtgcttt aaggggtaaa atcgaacaag aattaaacat
      781 acaaccttta aaagaatttg gcgaaaatta tacagaatat tatcacgatg gaaaaggtgc
      841 tttacaaaaa ctacttattg aaaaacaagg acaggtagca ggtgcttttc atagaaaaga
      901 tttaggggat attgatttgg tttggggaga tggaaacttt ggattaagtc atattgtcaa
      961 tcgaagagaa gaagatttca ttaaacaagg gttaaataaa atagaagcaa aaaataaagc
     1021 tttaaatttt ataaaagaaa tagaaaatat tataaataat ggaaatgtaa aaaaaggtaa
     1081 taatagagct tttattgatg ttaagaatag tagagttatg gtagcacttg attataaagg
     1141 taaagataaa aagtggatta taactgcata taatttttat taatattatc gcccctagct
     1201 tagccgatac gcactaaagc taggcttaat actgacactt taagcgtgag tagtgtcaat
     1261 ggcgattatt aattataaca taaatttatg taatattttt ttaaaacata aaagataatt
     1321 tggaattggg aggaaaataa aaattattgg ataataacat cttatagcaa aagatgagcc
     1381 taacaagggt atcgactctg ctaggagcat tatagctttt caaggagatc tattctcttg
     1441 tagctcatct tatgaaatta taacataaat ccatataata ttttttaaat ttaaaagatg
     1501 ttggagatag aagaaaggct acaagaaaat atttgtgaaa aaatatcaaa aatacgatgt
     1561 gatatttatg ctaattttta aagtatgttt gttaatttta ttttgttatg attgtattct
     1621 taaactttat ctattttaat agataaatat tcaaggctaa aggggtgtga aaatggactt
     1681 agaaaaggat atctttgagc ttgatataag tgctttagtt agagatagta tagaagaggc
     1741 tttagaatat gaagaatcca ataatatagg agaaaatagt aatcactgtg atgaggaaac
     1801 aaaaaaatat tatttaggtt tagctaataa tgataaagaa gcattattaa aaaagaaatt
     1861 tttaatagat gaatttataa aggataatgc gtttgagtga taaaattacg aaaaaagatg
     1921 cttttttaac aaaagaaaat attgatctta tagtacaaca gataaaagag ttttgtgaat
     1981 tacataagga aaagtataaa actagttata ttaaaggtaa atatgtgaag gatgctctaa
     2041 ttaaaactat tagacattat aatagttttt taaaagagtt taattttata ttaggaactg
     2101 tagattttta tcgtacttat gcttggtttg gttattttct agctttagaa tttccttatt
     2161 atcaaacacg ctttaaaatt gcaagaactg caatattccg tataatcaaa gagcttgaag
     2221 aaaaaaaagg tattgttttt actgatgtta ctaaaataga gattataaaa tttttacaat
     2281 atgagttaga aggaaaggga gagcttggtg ttggaaagaa tggactatat cttttaggta
     2341 ggatagtttc aactcttgat tgatgaataa tattaaaatt ttttatgatt aatcttgttt
     2401 agtttgtaaa attatagatt gtttaatttt tatttctacc tatagattta attttaaatt
     2461 cttttgtatc catgaagcta ccttttttat cttataaaag gttttataga ttttaaattt
     2521 tcatccaaaa atagatcttt taaactaatg ctatatggta tataggcttt ttctcaaaaa
     2581 tgagaaaaaa ct
//
LOCUS       DAPOLW010000162         2516 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.162, whole genome shotgun sequence.
ACCESSION   DAPOLW010000162 DAPOLW010000000
VERSION     DAPOLW010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2516
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.162"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            1..2451
                     /locus_tag="ROE18_001667"
                     /pseudo
     CDS             1..2451
                     /locus_tag="ROE18_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002879698.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
BASE COUNT         1007 a          374 c          382 g          753 t
ORIGIN      
        1 actgaagaat tctataaaga agtagccaaa ctcatagaaa attccaaaga aaacttaaaa
       61 ggctttttga ttgacttgac atttttaaaa gacaaacaaa aatcaaattt taaaaaccta
      121 gcaagtattt ataaaacttt tcatagagac tttttgctaa atgagtttaa ccccaacgat
      181 gcaaattcac tcaacaatgc tttttacaaa gagcttttat atatcttagg gctttgtgag
      241 agcaaacaaa actcaaaact catcatcgca aaaagtgaag aaagcaaaga agagcaaggc
      301 actttctaca ccgctataaa ttctaagctt aaagaagaaa attttgaaac catcttaaaa
      361 cttttgatct tatggcttaa tcgcattttg tttttaaagc ttatagagtc aaatttggtg
      421 cgttttaatg atgataaaaa tttgaaattt ttaaatttca aaaaaatccc tgattttgac
      481 aagcttagcg aacttttctt tgaagtttta gccaaagaaa aaagcacgag aaagaaaagc
      541 gaatttgcct atctgcctta tctaaattct tctttgtttg aaaaacaaag catagaaaac
      601 acacttgaaa tttcaagctt aagcaatgac ttaaagcttt tttactataa aaacactgtg
      661 ctaaaagatg ataaatgtaa agctaaaaaa ggacaagtgg ggcttttaga atacttgttt
      721 gaatttttgg atagctttga ttttggtagc gatgatgagc aaagcgaaat tttaagccaa
      781 aaagaactca taagttcaag tgttttagga aatgtgtttg aaaaactcaa tggctacaaa
      841 gaaggaagtt tttacacgcc aagctttatc acttcttata tgtgtaaaga aagcatcaca
      901 aaagttgtgc ttgataaatt caacgctcaa tttgatcttg atgctaaaga tataagcgaa
      961 ctaagaaagt ctttaagaaa agaagacaaa aaagcacaaa aagagctttt aaactctata
     1021 aaaatttgcg atcctgcagt gggaagcggg cattttttgg tttctgcttt aaatgttatg
     1081 ttaagcattt atgatgagct aaatcttttt gatgaagagt tttacctaga agtgcaaaac
     1141 gatgaaattc tcatcacggg tagaaaaggc gagtttatag agtataaacg cccaagcacg
     1201 cctaaagata aagcccatct tatccagcaa gaactttttc ataccaaaaa agacatcata
     1261 gaaaacaacc tttttggagt cgatatcaac cctaactcat gcgagatcac caagctaagg
     1321 ctttggatag agcttttaaa acatagcttt tatcaaagct ttgatgatgg gaattatcac
     1381 gatcttaaaa ccctgccaaa tatcgatata aacataaaat gcggaaattc tttggtatct
     1441 tactttgaaa caggcaaaag cctaagccac taccctaaca tcaaagaacg catcaacaaa
     1501 tacaaacgca tagtaaaaga ctataaagaa ggcttttaca cagataaaag ccacatcaac
     1561 caagagataa aaaatctcaa aatttctttt aaaaatttct gctttgcgga taaatttaaa
     1621 aaagaaatga aaggctttaa cgataaatgt gaaaaatact ctaaaaaata cggaaatttc
     1681 ttagccgtag atgatgaaaa tttgaaattc tttgttagtg cgaatttgac tctttttgac
     1741 tttgatgaaa aagaagccac aaaagaattt gcaaatctta aaaaagaata cgacaatatc
     1801 ttcaacctag aaagcaatca tccttttgaa tggcgttttg aattccctga aattttggac
     1861 gatgatggaa atttcaaagg ctttgatctc atcattggca atccgcctta tataaaagaa
     1921 aatgataata aagatctttt taccaataca aaaaagttaa gaacttatca aggaaaaatg
     1981 gatatttggt atcatttcgt agggcgtgga tttgatatac ttaagaataa tggatattta
     2041 gcatttatcg ctacaaataa ttgggttaca aattcagggg ctaaaaaact acgcaatata
     2101 gttttagaag aatctcaaat tttaagcctt gttgatttta gttcttttat ggtgtttgat
     2161 tctgcaagca tacaaactat gataatgcaa tttcaaaaaa taaaaccgcc taaaaattac
     2221 gaatttcatt ttgctaaaat cacaacccaa actccaattt atgaagatgc tataaatctc
     2281 ttaaaaaatg aaaaaaccca aaacaatgaa attctaaaga taaatttaac tccaaaaaaa
     2341 ttcatagata aaactttaaa ttttacaaaa agtgattatg aagaactttt caataaaatt
     2401 caaaaatatg ggaaatttta tcttgaagaa aaagaagtag caaatggaat acatccacat
     2461 tatgatttta taaataatag aattaatagt aatcataatt ttgcttttaa aatagg
//
LOCUS       DAPOLW010000163         2515 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.163, whole genome shotgun sequence.
ACCESSION   DAPOLW010000163 DAPOLW010000000
VERSION     DAPOLW010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2515
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.163"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            11..757
                     /locus_tag="ROE18_001668"
     CDS             11..757
                     /locus_tag="ROE18_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651825.1"
                     /translation="MLFLSLVLSSNLLANNFSQKKVIKIEKSADSFEVIDLNQNVANP
                     NLNQQKALFDSSTLIEKKSQITKDKDIDFAIVLTSRKNFGYFLDGFRVSDKEFSTLFA
                     KNLIQSLKLNWVNSAANGIYQSPKTLSYFSPKDAKLINVSPFLTQEKDKAKMYAKFTD
                     YVVVVNLQDFYVNITNYFITTSKEGVANVNFKIISTSNGKILAAKNAKLNLILKDQDA
                     KQNYQDIINQMPKMLADVIKNQIFHLKLLN"
     gene            complement(761..2515)
                     /locus_tag="ROE18_001669"
     CDS             complement(761..2515)
                     /locus_tag="ROE18_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651826.1"
                     /translation="MFDKIHYYYFNANYEKCLNLSEQFLKESPKFALEFATLSSYKLS
                     LFQKALYYAQELFSLNPTSFNGLMLTKSYIENLRLDEALNLLQTLLTRKDDLEDELKL
                     ELAFIYKLSNKLEESEQIFKELLSKDMYNLNLWKNYAEIYFKHDFTKALNAHEHLCHF
                     MQDLIDKLQKGIIAEQTNLNLVKLEDRLHSKTKENLTISKIEDFLTHQILPQKAYLLF
                     KLFRISDSLELFQSLQEANQHHAQFWQNYAKVLEFNSNYQEAYHAYKKCLSLDSHATY
                     QFDLAYLLMRMGVDDNFEEGKKYYESRLFYAHNETFSTYHYNESLKAFNKFGVDAFKN
                     KEVLVFCEQGFGDTIMYARCLEKLCKIASKVLFAPQSAMYEMFKNQIKFLNQNDDIFK
                     NVKVLKNLPTNFDYAIPICSLPFFIDIKLDEILRLKTPILPQKKPHNQRKKLGIFYAT
                     PNAENSDLLRNVKFEFLFDVLKDLDYEIISFQMQLKEELPKVIEDRSKLIKNWNDTLN
                     YLYDIDCMLSIDSAIAHLSLAMDIPTIVLLHPRFDWRWGKFENPKSYFWPKAKCFIIK
                     EQEETKRNLQKLIKDILN"
BASE COUNT          929 a          338 c          332 g          916 t
ORIGIN      
        1 gtattgtttc attttatttt taagtttagt tttaagttct aatcttttag cgaataattt
       61 ttctcagaaa aaagttatta aaattgaaaa aagcgcagat agttttgaag taatagatct
      121 aaatcaaaat gttgcaaatc caaatctaaa tcaacaaaaa gcattgtttg atagttctac
      181 cttgattgaa aaaaaatcgc aaatcaccaa agataaagat attgattttg ccattgtatt
      241 aacttctagg aaaaattttg gttatttttt agatggtttt agggtgagtg ataaggaatt
      301 ttctacatta tttgctaaaa atttgattca aagtttaaag cttaattggg ttaattctgc
      361 tgcaaatggt atttatcaaa gtcctaaaac tttgtcatat tttagcccta aggatgcaaa
      421 acttataaat gtaagtcctt ttttaacaca agaaaaagat aaggctaaaa tgtatgccaa
      481 atttacagat tatgttgtgg tggtaaattt gcaagatttt tatgtaaata ttacaaatta
      541 ttttatcaca actagtaaag agggtgtggc taatgttaat tttaaaatca tttctacaag
      601 caatggaaaa attcttgcag caaaaaatgc aaaattaaat ttgatattaa aagatcaaga
      661 tgcaaagcaa aattatcaag atattataaa ccaaatgcca aaaatgctag ctgatgttat
      721 caaaaaccaa attttccacc taaagctctt aaactaagct ttagtttaaa atatctttaa
      781 tcagtttttg caaatttctt tttgtttctt cttgttcttt tatgataaaa cattttgctt
      841 ttggccaaaa ataactttta ggattttcaa attttcccca acgccaatca aacctaggat
      901 gtaaaagaac tatagtagga atatccatag ctaaacttaa atgcgctata gcactatcaa
      961 tactaagcat acagtcaata tcatataaat aatttagagt atcattccaa ttttttataa
     1021 gcttgcttct atcttctatt accttaggca attcttcttt taattgcatt tgaaaagaaa
     1081 tgatctcata atctaagtct tttaatacat caaataaaaa ttcaaatttt acatttctta
     1141 ataaatcaga attttcagca ttaggagtag cataaaaaat accaagtttt tttctttgat
     1201 tatgcggttt tttctgtggc aatataggtg tttttaatcg taaaatctca tcaagcttaa
     1261 tatcaataaa aaaaggcaaa gaacaaatag gaatagcata atcaaaattt gtaggtagat
     1321 tttttaaaac ctttacattt ttaaaaatat catcattttg atttaaaaat ttgatttgat
     1381 ttttaaacat ttcatacatg gcactttgag gagcaaataa aacctttgaa gcgattttgc
     1441 aaagtttttc taagcatctt gcatacatta tagtatcgcc aaagccttgc tcgcaaaata
     1501 ctaaaacttc tttattttta aaagcatcaa cgccaaattt attaaaagct tttaggcttt
     1561 cattataatg ataagtagaa aaagtttcat tatgagcata aaataatctg ctttcataat
     1621 atttcttgcc ctcttcaaaa ttatcatcca ctcccatacg catcaaaaga taagccaaat
     1681 caaattgata ggttgcatga gaatccaagc taagacattt tttataagca tgataagctt
     1741 cttgatagtt tgagttaaat tctaatacct tagcatagtt ttgccaaaac tgtgcatggt
     1801 gttgattggc ttcttgtagt gattgaaaaa gttctaaaga atcagatatt ctaaaaagct
     1861 taaaaagcaa gtatgctttt tggggtaaaa tttgatgagt taaaaaatct tctattttag
     1921 aaatggtaag attttctttg gttttactat gaagcctatc ttcgagtttg actaaattaa
     1981 gattggtttg ttcagcaatg attccttttt gtagtttatc aatcaaatct tgcataaaat
     2041 gacacaagtg ctcatgtgca tttaatgcct tagtaaaatc atgtttaaaa taaatttctg
     2101 cataattttt ccatagatta agattataca tatctttaga aagcaattct ttgaaaattt
     2161 gttcagattc ttctagttta ttactcagtt tataaataaa agccaattct aacttaagtt
     2221 catcctctaa atcatctttg cgagttaaaa gtgtttgtaa taaattcaag gcttcatcaa
     2281 gtcttaaatt ttcaatatag cttttagtaa gcataagacc attaaaactt gtaggattta
     2341 aagaaaaaag ctcttgagca taatataaag ctttttgaaa aagagaaagt ttataagaag
     2401 aaagcgtagc aaattctaaa gcaaattttg gactttcttt taaaaattgc tcactcaagt
     2461 tcaaacattt ttcataatta gcattaaaat aataataatg aattttatca aacat
//
LOCUS       DAPOLW010000164         2512 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.164, whole genome shotgun sequence.
ACCESSION   DAPOLW010000164 DAPOLW010000000
VERSION     DAPOLW010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2512)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2512)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2512
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.164"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..661)
                     /gene="neuC"
                     /locus_tag="ROE18_001670"
     CDS             complement(<1..661)
                     /gene="neuC"
                     /locus_tag="ROE18_001670"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HDX3651827.1"
                     /translation="MKKIVFVSGTRADFSKIKSLMMKVENSNEFELFIFVTGMHMSKK
                     FGSTYMEIEKCGFKNIYKYINHDKYYQMDKALSSTIDGFSKFIHEIEPDLIVVHGDRV
                     EPLAAAIVGSLNNILVAHIEGGELSGTIDESLRHAISKLAHIHLVNDEIAKKRLIQMG
                     EDEKSIFIIGSPDLELLNNTISLDEAKKYYDIKFKNYAIAIFHPITTEINSLYKQSEE
                     FV"
     gene            complement(658..1689)
                     /gene="neuB1"
                     /locus_tag="ROE18_001671"
     CDS             complement(658..1689)
                     /gene="neuB1"
                     /locus_tag="ROE18_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialic acid synthase"
                     /protein_id="HDX3651828.1"
                     /translation="MQIKIDKLTISQKNPLIIPEIGINHNGSLEIAKLMVDAAKRAGA
                     KIIKHQTHIVEDEMSQEAKNVIPGNANISIYEIMEQCALNYKDELALKEYVEKQGLVY
                     LSTPFSRAAANRLEDMGVSAYKIGSGECNNYPLIKHIAQFKKPMIISTGMNSIESIKP
                     TVKILRNYEIPFVLLHTTNLYPTPSHLVRLQAMLELYKEFNCLYGLSDHTTNNLACIG
                     AIALGASVLERHFTDTMDRKGPDIVCSMDESTLKDLINQTQEMVLLRGDNNKNPLKEE
                     QVTIDFAFASVVSIKDIKKGEILSMDNIWVKRPSKGGISAKDFEAILGKRAKKDIKNN
                     IQLTWDDFE"
     gene            complement(1670..>2512)
                     /locus_tag="ROE18_001672"
     CDS             complement(1670..>2512)
                     /locus_tag="ROE18_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2,3 sialyltransferase"
                     /protein_id="HDX3651829.1"
                     /translation="SLKNIDYKRLPKQFDVFRCNQFYFEDRYFVGKDVKYVFFNPFVF
                     FEQYYTSKKLIQNEEYNIENIVCSTINLEYIDGFQFVDNFELYFSDAFLGHEIIKKLK
                     DFFAYIKYNEIYNRQRITSGVYMCATAVALGYKSIYISGIDFYQDTNNLYAFDNNKKN
                     LLNKCTGFKNQKFKFINHSMACDLQALDYLMKRYDVNIYSLNSDEYFKLAPDIGSDFV
                     LSKKPKKYINDILIPDKYAQERYYGKKSRLKENLHYKLIKDLIRLPSDIKHYLKEKYA
                     NKNR"
BASE COUNT          806 a          417 c          266 g         1023 t
ORIGIN      
        1 ttacaaattc ttcactttgt ttatataaag agtttatttc ggttgtaatt ggatgaaata
       61 tagctatggc ataattttta aattttatat cataatattt ttttgcttca tctaaagata
      121 tagtattatt tagcaattct aaatcaggag aacctataat aaaaatagat ttctcatctt
      181 cacccatttg tattaatctt ttttttgcta tttcatcatt tactaaatga atatgtgcta
      241 atttactaat agcatgtctt aaactctcat ctatagttcc tgaaagctct ccgccttcta
      301 tatgtgccac taagatatta tttaaacttc ctactatagc agcagctaaa ggctccactc
      361 tatcaccatg cactactatt aaatcaggct ctatctcatg tataaattta gaaaaaccat
      421 ctattgttga tgataaagcc ttatccatct gataatactt atcgtgattt atatatttat
      481 atatattttt aaaaccacat ttttctattt ccatataagt agaaccaaac tttttactca
      541 tatgcatacc ggttacaaat ataaataatt caaattcatt tgaattttca actttcatca
      601 ttagagattt tattttagaa aaatcagctc tagttccgct aacaaaaact atttttttca
      661 ttcaaaatca tcccatgtta gttgtatatt attttttata tctttttttg ctctttttcc
      721 aagtatggct tcaaaatcct ttgcacttat accacctttt gaaggtcttt ttacccaaat
      781 attatccata gataaaattt cacccttttt tatatcttta atacttacta cactagcaaa
      841 tgcaaaatca atggtcactt gctcttcttt taaaggattt ttattattat cgcctcttaa
      901 aagcaccatt tcttgtgttt gatttataag atcttttaaa gtgctttcat ccatagagca
      961 aactatatca gggccttttc tgtccatggt atctgtaaag tgtctttcta gtacacttgc
     1021 tccaagagct attgcaccta tacatgcaag attgtttgtg gtatgatcac taagtccata
     1081 aagacaatta aactctttat ataattctaa catagcttgt aatcttacta agtgcgatgg
     1141 agtaggatat aaatttgtag tatgaagcaa aacaaaaggt atttcataat ttctaagtat
     1201 cttaactgtg ggttttatac tttctatgct attcattccg gtgcttataa tcataggttt
     1261 tttaaattgt gctatatgtt ttattaaagg ataattatta cattcacctg agcctatttt
     1321 ataagcactt acacccatat cttctaaacg atttgctgca gctctactaa atggagtgct
     1381 aagatatacc aaaccttgct tctctacata ctcttttaaa gctagttcat ctttatagtt
     1441 taatgcacat tgttccataa tctcataaat gctaatattt gcattacccg gtataacatt
     1501 tttagcctct tggctcattt catcttcgac tatatgagtt tggtgtttta ttatcttagc
     1561 tcctgctctt ttggccgcat ctaccataag ttttgctatt tctaaactac cattgtgatt
     1621 tatacctatt tcagggatta tcaaaggatt tttctgagaa atagttaatt tatctatttt
     1681 tatttgcata tttttccttt aagtagtgtt ttatgtcact tggaagtcta attagatctt
     1741 ttattagctt ataatggaga ttttctttta acctactttt ttttccataa tatctttctt
     1801 gtgcatactt atctggtatc aatatatcat ttatatattt ttttggtttt ttactcaata
     1861 caaaatcact tccaatatcc ggagccaatt taaaatactc atctgaattt aaactataaa
     1921 tattcacatc ataccttttc attagataat ctaaagcttg taaatcacat gccattgaat
     1981 gattgataaa tttgaatttt tgatttttaa aaccagtgca tttatttaat aaattttttt
     2041 tattattatc gaaggcatat aaattatttg tatcttgata aaaatcaata ccacttatat
     2101 atatactttt atatcccaga gccacagctg tagcacacat ataaactcca ctagtaattc
     2161 tttgcctatt gtatatttca ttatatttaa tataggcaaa aaaatcttta agctttttta
     2221 taatctcatg acctaaaaaa gcatcactaa agtataattc aaaattatca acaaattgaa
     2281 atccatctat gtattctaaa ttaatagtag aacaaactat attttctatg ttatattctt
     2341 cgttttgtat aagtttttta ctagtatagt attgttcaaa aaacacaaaa ggattaaaaa
     2401 aaacatattt tacatcttta cccacaaaat atctatcttc aaaataaaac tgattgcatc
     2461 taaatacatc aaattgtttt ggtaaccttt tataatctat attttttaaa ct
//
LOCUS       DAPOLW010000165         2510 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.165, whole genome shotgun sequence.
ACCESSION   DAPOLW010000165 DAPOLW010000000
VERSION     DAPOLW010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2510)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2510)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2510
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.165"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..1432)
                     /locus_tag="ROE18_001673"
     CDS             complement(<1..1432)
                     /locus_tag="ROE18_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HDX3651830.1"
                     /translation="MKKIIILTFFVVFAFGDVNRTIINNINEKINTLNTVISASIWNI
                     RYENFIKYQDINDELIILNLNLKKTSDIHQQEELKRKIANLEEQLNLLKEYKDLNFAQ
                     SLSAPDNIETLSKLTNPLAIIGAFSHIKKLKGEKEEYIFKFNDFKNLVDKIREKNSEL
                     KELVELKPSVENIEALKASDKKLEEFEQALNFASVSYSVYEKKIDEELSRVSAEIKVQ
                     SLRAVNILVAIVIVIAIAFMLKFIAKKYIKDSERYYTATKIINFININIIFLILLFAY
                     IENITYLVTILGFASAGLAIAMKDMFMSMLGWCVIIFGGSFRVGDRVKVFQNDTTYIG
                     DIIDISFLRITLYEELTLETYNKNRRSGRIIFIPNNYVFTNLLANYTHHGMKTVLDGI
                     DISVTFDSNLDKAQEIVENIVTRHAKGYTELARKNIARLQHEYSIKNPKVEPRFFMFF
                     EHWGMRISAWYMTNAYAALVLRSTISK"
     gene            complement(1429..2484)
                     /locus_tag="ROE18_001674"
     CDS             complement(1429..2484)
                     /locus_tag="ROE18_001674"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HDX3651831.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAKEIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESFFLK
                     TLSSRELAAGMAEFIKMAAMFDYSILDFIEKIDEKSFLNATCENEIFTQIIAKSIELK
                     SRVVEQDEKESRLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGL
                     LDKMQSQRIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLASPLGKGLI
                     KGDISKEDIIATLREFQ"
BASE COUNT          895 a          445 c          267 g          903 t
ORIGIN      
        1 ctttgctaat cgtacttctt aataccaaag ccgcataagc attagtcata taccatgcag
       61 aaattctcat tccccaatgt tcaaaaaaca taaaaaacct tggctccact ttaggatttt
      121 taatactata ttcatgttgt aaacgagcta tattttttct agcaagctca gtataacctt
      181 tggcatggcg tgtaacaata ttttccacaa tttcttgagc tttgtcaaga ttgctatcaa
      241 aagtaacact tatatcaatg ccatcaagca cggttttcat accatgatgg gtataattag
      301 caagcaaatt tgtaaaaaca tagttattag gaataaatat aatacgccca ctacgacgat
      361 ttttattata agtttcaagc gtaagctctt cataaagagt aatgcgtaaa aaagaaatgt
      421 ctataatatc tcctatatag gtagtatcat tttgaaaaac ttttacacga tcccctactc
      481 taaaacttcc gccaaaaata atcacacacc atccaagcat agacataaac atatctttca
      541 tagcaatagc taagcccgca gaggcaaaac caagtatagt tacaagataa gtaatatttt
      601 ctatataagc aaagagcaaa ataagaaaaa taatatttat attaataaaa ttaataatct
      661 tcgtagcagt ataatatctt tcactatcct taatgtattt tttagcaata aatttcaaca
      721 taaaagctat agctataaca ataacaatag caacaagtat atttacagcc cttaagcttt
      781 gaactttaat ctcagcactt actcgagaaa gctcttcatc aatttttttc tcataaacag
      841 aataagaaac actagcaaaa tttaaagctt gctcaaattc ttccagcttt ttatccgaag
      901 cttttaaagc ttctatattc tcaacacttg gtttaagctc aactaattcc ttaagttctg
      961 agtttttttc cctgatttta tctactaaat ttttaaaatc attaaattta aatatatact
     1021 cttccttttc tccttttaat ttcttaatat gagaaaaagc tcctataata gccaaaggat
     1081 tagtaagctt agataaagtt tctatattat caggggcact aagactttgt gcaaaattta
     1141 aatctttata ttctttaagc aagttcaatt gctcttctaa atttgctatc ttgcgtttaa
     1201 gttcttcttg ttggtgaata tcggaagtct tttttaaatt aagatttaaa atgattaatt
     1261 catcatttat atcttgatat tttataaaat tttcataacg tatattccaa atactagcac
     1321 tgattacagt atttaaagta ttaattttct catttatatt attaataata gtccgattta
     1381 catcaccaaa agcaaaaaca acaaaaaagg ttaaaataat aatttttttc attggaattc
     1441 tcttaaagtt gcaattatat cttctttaga aatatcacct tttatcaaac ccttacccaa
     1501 aggactagca agaacaaaat tgattttttt attagagctt tttttatcca tgaaaaaagc
     1561 ttcataaaat tcatctacat tgttgatttt atatgatatt ggcaaaccga atttaagtaa
     1621 aatatctttt attctttgac tttgcatttt atccaaaagc cctaaattta aagccaattg
     1681 atttgccata accataccta tagccaccgc ttctccgtgt aaataaagct tataatctgt
     1741 aaaattttct ataacatgag caaaagtatg accataattt aaaagcattc taagccttga
     1801 ttctttttca tcttgttcaa caacccttga tttaagctct atgctttttg ctataatctg
     1861 agtaaaaatt tcattctcac aagtagcatt taagaaactt ttttcatcaa ttttttctat
     1921 aaaatcaagt atactataat caaacattgc tgccatttta ataaattcag ccatgcctgc
     1981 agcaagttct ctagagctca aagtctttaa aaaaaaactc tcacaatata cagctttagg
     2041 ttgataaaaa gtgccaataa gatttttacc aaaattatta ttaacacctg tttttccacc
     2101 tactgctgca tcaacacaag ctaaaagtgt agtaggaata tttataaaat caatacctct
     2161 ttgataaata ctagcagcaa atccgcccat atcactaatc acgccaccac caaaacttat
     2221 aagtacgctt tttctatcca atttagaatt aaacatttgg tttaaaattt cttccatggt
     2281 gcttaaattt ttatattctt caccatcttt cacagtggca ataaaaattt cttttgcctt
     2341 aattttagaa agtaatgttt tcaaatgaag acctgaaatc ttaggatttg aaagtataaa
     2401 aaccttacta tcaaattcta attcttcaag ttcatcaata taaaccttat aagcattttc
     2461 ttttaactta acttctactt gcattgaact actctttttg catttatttt
//
LOCUS       DAPOLW010000166         2480 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.166, whole genome shotgun sequence.
ACCESSION   DAPOLW010000166 DAPOLW010000000
VERSION     DAPOLW010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2480
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.166"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..610
                     /locus_tag="ROE18_001675"
     CDS             <1..610
                     /locus_tag="ROE18_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDX3651832.1"
                     /translation="FNFFAEKLTDKTILNYEIPTIWFQSLGGLFVILFAPFSAFIWTI
                     CAKNNKEISSIIKFALGLLGVALAFLIMALASNHAISLNGDANTLRENLENSSQIILV
                     SPWCLVSSFLLMVLGELCLSPVGLSIMTKIAPNLIKSQVMGLWFVASALGNALAGFIG
                     GKASEENIAYLPNLFYQCMWILLGAVIILLILKKPINKILKN"
     gene            626..2416
                     /locus_tag="ROE18_001676"
     CDS             626..2416
                     /locus_tag="ROE18_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HDX3651833.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDAKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLKINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNATSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KALLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEKLANTNLLIEPSKMTALLINS
                     LDKSVKIIQEINPSTHLKAAKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIENKELIS
                     ELDIDAKASEFRAQSKYYLSDSFATIAGFNENAAYPHYKATKESFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHIAISSAIFPKDIAMPLLDAITRA
                     PLWKEQIDYIHGTGHGVGYFLNVHEGPQVLSYLSPVLEKTKAKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFEKLSPKLGDYPKALVWLEKRTKAIF"
BASE COUNT          920 a          357 c          410 g          793 t
ORIGIN      
        1 ttttaatttt tttgcagaaa aattaacaga taaaaccata ttaaattatg aaattcctac
       61 aatatggttt caatctcttg gaggtttatt tgttatactt tttgcacctt ttagtgcttt
      121 tatatggact atatgtgcca aaaataataa agaaatttca tctattatta aatttgcatt
      181 aggacttttg ggtgtagctt tggcattttt aataatggct ttagcttcaa atcatgcaat
      241 tagtttaaat ggcgatgcta atacattaag agaaaattta gaaaattcat cacaaattat
      301 tttagtttca ccttggtgtc ttgtcagtag ctttttgctt atggttttag gagagctttg
      361 cctttcccct gtgggacttt ctataatgac aaaaattgca cctaatttaa ttaaatctca
      421 agtcatggga ctttggtttg tagcaagtgc attaggcaat gctttagctg gattcatagg
      481 tggtaaagca agtgaagaaa atatagctta tttgccaaat ttattttacc aatgtatgtg
      541 gatattactt ggtgctgtta taattttact tatactcaaa aaacctatca ataaaatact
      601 aaaaaattaa tattaaggag aaaatatgag tatttacaaa caaagagtat tagaacttag
      661 aagattaatg aaagaaaata atattgacgc ctatctcatc ttaagcgcgg atccgcattt
      721 gagcgaatat ttaccagaat attacaaaaa cagagtcttt atcagcggct ttaagggttc
      781 tgttggaaca gttcttatca cacaagaaga gggctttttg tgggtagatg gaagatattg
      841 gcttcaagca caaaaggaat tagaaggtag tggcatactt ttacaaaagc aagatgctaa
      901 aaatactttt accaaatggt tggaaaaaaa tttaagcgaa gatcaaattt taggcatcga
      961 ttttgcactt ttacctttat ctttgcaaaa agatttaaag attaattgca aggcaaattt
     1021 aaaacatata gatttgataa gtccactttg gaaagatcgt cccactttac cacaagaaaa
     1081 aatttatgaa cacgaactag aatactgctc ttactcaaga aaagaaaaat tagcattagt
     1141 gcgtcaaaaa atgaaaaatt taaatgctac ttctcattta atctccagcc ttgatgatat
     1201 agcttggctt acaaatttaa gagggaatga tgtaaattat aatcctgtat ttttaagtca
     1261 tttgctaatc ttggaagaca aagccttact ttttgttgat cagaaaaaag taaattcaga
     1321 acttgaaaaa aaattaaatt tagatgggtt ttggcttaaa aattatgatg aaatcatcat
     1381 ggagcttgaa aaacttgcaa atacaaattt gcttattgaa ccttcaaaaa tgaccgcttt
     1441 actcataaat tctttagata aaagcgtaaa aatcattcaa gaaattaatc caagcactca
     1501 cttaaaagca gctaaaaata caaaagaaat agcgcatata caagatgcta tgatagaaga
     1561 tggagtggct ttatgtaaat tttttgcatg gcttgaagaa gcgatagaaa ataaagaatt
     1621 aataagcgaa ttagacatag atgctaaagc aagcgaattt agagcacaaa gcaagtacta
     1681 cttaagtgat agttttgcca ctatagcagg ctttaacgaa aacgcagcat atccacatta
     1741 taaagccaca aaagagagtt ttgcctatct taaaaaagat gggcttttac ttattgattc
     1801 tggtggacaa tataaaaacg gcacaacaga tattacacgc gttgtaccaa taggaaaggc
     1861 taatgcagaa caaattcatg actatacctt ggttttaaaa gcacatattg ccatttccag
     1921 tgcaattttt ccaaaagata tagctatgcc cttacttgat gcaatcacac gcgcaccttt
     1981 atggaaagaa caaattgact atatacacgg cacaggacat ggcgtgggat attttttaaa
     2041 tgtccatgaa ggtccacaag ttttatctta tctatcccct gtgcttgaaa aaacaaaagc
     2101 caaagaaggt atgctaacct ccatagagcc aggtatttat aaagtaggta aatggggcat
     2161 aagacttgaa aatttagtta ttcataccaa agtagaaaat cctaaaaata aagattttgg
     2221 agagttttta tactttaaac ctgttactct ttgtcctttt gaaatatctt gtattgatac
     2281 aaaaatgtta gatgaaaaag aaaaagagtg gttaaacaat tatcacaaag aagtatttga
     2341 aaaactttct cctaagctag gtgattatcc aaaagctcta gtttggcttg aaaaaagaac
     2401 aaaagccatc ttttaagata cttttgttaa catagataaa ttttccttgt attaaactta
     2461 taatttgttt aatacaagat
//
LOCUS       DAPOLW010000167         2469 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.167, whole genome shotgun sequence.
ACCESSION   DAPOLW010000167 DAPOLW010000000
VERSION     DAPOLW010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2469
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.167"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..190)
                     /locus_tag="ROE18_001677"
     CDS             complement(<1..190)
                     /locus_tag="ROE18_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HDX3651834.1"
                     /translation="MKDFFKDQFFKALEKNTIFSRADVQGNLIFVSDKLCQISGYSKK
                     ELIGKKHSIFKHPDVEECY"
     gene            complement(187..846)
                     /locus_tag="ROE18_001678"
     CDS             complement(187..846)
                     /locus_tag="ROE18_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDX3651835.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYNLFRIFAYIVLGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNML
                     SFIENNVFFDSFVKKIIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIANAMSKQNIF
                     EGILVMMIFGISTLPAMLFFSKISQFFSDFLKNLFNYLSYGVIVCYGINLAYIGFKAF
                     Q"
     gene            complement(843..1961)
                     /gene="carA"
                     /locus_tag="ROE18_001679"
     CDS             complement(843..1961)
                     /gene="carA"
                     /locus_tag="ROE18_001679"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HDX3651836.1"
                     /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVS
                     TKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNV
                     KADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEIKKLAEAKIPMLGICLGHQLLSN
                     AFGYETYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            complement(1961..>2469)
                     /locus_tag="ROE18_001680"
     CDS             complement(1961..>2469)
                     /locus_tag="ROE18_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HDX3651837.1"
                     /translation="MLDIANSSFVEIKDQLEKLKVCIIEVLEKDILNERKLDERVKEL
                     LEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHLAHQILEELVENDYIN
                     FIVSENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIPGSEEYDLIFEKLYQE
                     ELRKKGMF"
BASE COUNT          899 a          435 c          244 g          891 t
ORIGIN      
        1 tataacattc ctcaacatct ggatgtttaa atattgaatg tttttttcct ataagctctt
       61 ttttactata tccacttatt tgacaaagct tatcactgac aaaaattaaa tttccttgaa
      121 catcagctct tgaaaaaatt gtattttttt caagagcttt aaaaaactga tctttaaaaa
      181 aatctttcat tgaaaagcct taaaacctat ataggcaaga tttataccgt aacaaacaat
      241 aacgccatac gataaataat taaataaatt tttcaaaaaa tcactaaaaa actgtgaaat
      301 tttagaaaaa aataacatcg caggtaaagt tgatattcca aaaatcatca ttaccaaaat
      361 accttcaaaa atattttgct tactcattgc attggctata aaaaaataca ccaatccaca
      421 aggaacaaaa ccatttgaaa atcctaaaaa tatggctgat tttaatcctt taaaattttt
      481 agatttttta ataattttct ttacaaaact atcaaaaaaa acattatttt caataaaaga
      541 taacatatta cctctaaaaa taagagcaaa acccaaaatc atcataaata taccaagaat
      601 aaaaaatgac aaactttgaa ccttggcatt gattgccaag atattcccaa aagtcccaaa
      661 aattatccct aaaacaatat aagcaaaaat tctaaacaaa ttataaataa aagttaataa
      721 aaataaatta ttgctttttg aattcaaatt tataaaaagt aaattaaaac caccacacat
      781 agaatagcag tgtccaaaac tagataaaaa agcaacgctg ataatagcta aaaaatctat
      841 actcacatca aattcataaa ttctttaaaa atatacttac tttcatgagg acctgaagaa
      901 ctttctggat gatgttgcac tgaaataata ggatagtctt tatatcttac tccttcaaca
      961 ttatcgccaa ataaatttct atgagtgata tgagccactt gagctaattc ttctggaaca
     1021 ttataattat gattttgtgc ggtaatttct accgtttttg tatcaagatt gatcacagga
     1081 tgatttgctc catgttgtcc aaatttcatt ttataagttt catatccaaa agcattactt
     1141 aaaagctggt gacctaagca aattccaagc ataggaattt tagcttctgc aagtttttta
     1201 atctctgcaa tctcttgttt taaaatcctt ggctcacctg gaccattaga aagaaacacg
     1261 ccttgaattt cacctttttt atacagagta atcaactcat ctgctttaac attatatgga
     1321 taaacttcta cttcaaaacc tacttctaca agttcattta agatatttgt tttaacacca
     1381 taatctataa cagcaacttt tttctcactt cttttagcat cattaaattt ttgaaaacta
     1441 gcgttccaaa cgccttgttt atgagaataa tttttcttag tgctaacttc ttttacaaaa
     1501 tttacttcat caatttttgc tgatttttct aaggcgattt ttaaatcttc tttatttgaa
     1561 atttcagttg aaattacagc tcttaaattg ccattatttc ttatcatttt tactagatat
     1621 ctcgtatcaa gttcataaat tcctattttt ccatgttttt caagataatc ttgcagactt
     1681 tctttagcgc gaaaatttga aaaactggaa cttaattcac gcattaaaac accacttgca
     1741 aaaatttcct tgctttcatt atcattttca ttggttccca ctataccaat ttctggcatg
     1801 gaaaatacga taaattgccc tgcataagaa ggatctgaaa taatttcttg ataccctgtt
     1861 aaagaagtgt taaatacaag ctctccaaaa aaagtaccgc tctttccaaa agccttagca
     1921 cttaaaaaaa tatcattttc taaataaata taagccttca ttaaaacata cctttttttc
     1981 taagctcttc ttgatagagt ttttcaaaga taagatcgta ttcttcgcta cctggaatag
     2041 gttttgtttt ataattgcta attttctcat aaacctcatc ttcaagtttt tcataaattt
     2101 taagataaga ctctatgctt gaaaagatta aatttttaac tctattttca ctcactataa
     2161 aattaatata atcattctct acaagttctt ctaaaatttg atgcgctaga tgattatgtc
     2221 tatcttcaga atctaaaatc acattaaatt caggagctaa ctttttcttc acaagccaaa
     2281 acatattttt acgatctact tgcataagct ccatttcatc ttcttgttgc tctaaaagct
     2341 cttttactct ttcatctaat tttctttcat ttagaatatc tttctctaaa acttctatta
     2401 tacatacctt aagcttttct aattgatctt taatttctac aaaagaagaa ttagctatat
     2461 ctaacatca
//
LOCUS       DAPOLW010000168         2459 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.168, whole genome shotgun sequence.
ACCESSION   DAPOLW010000168 DAPOLW010000000
VERSION     DAPOLW010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2459
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.168"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..1420)
                     /locus_tag="ROE18_001681"
     CDS             complement(<1..1420)
                     /locus_tag="ROE18_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HDX3651838.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFVKERKEITYKDFDLFSKK
                     LASEILKTLGNDNPTQAPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFNIDESLIKHAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNALKKMLFC
                     GEIMPNKQLNIWRKHLPNALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQIGVKGELFVRGTSLSLGYYNDKEKTKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRADNQIKYMGHRIELGEIESVINSHVNIKNSACIFKEDI
                     ICFYESEEEINFKDFLKDKLPSY"
     gene            1481..>2459
                     /locus_tag="ROE18_001682"
     CDS             1481..>2459
                     /locus_tag="ROE18_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDX3651839.1"
                     /translation="MLINQSFEIDSCDDVELNIKRTSKLEYRISYDDEKEIKAIVFII
                     GGYGANANIYFLDSYRNYIAKNFDVVAVHVFYHCFCQRRSDVEKYSTLADFTKDDLKL
                     IEKVLRKYNIPCDQLANNTVVSHCEYLSEIMTELKMLNRLPYDFEERLSATFIPSRGE
                     YQNFGIMAAIDHINALKDLVKRFPKLADLPKIYGGGSYGGYLALLIAKIAPWYVDGVI
                     DNSGSAVPPLNYIIGRELEFKSKDTNGDMYMQGDHFFVSCFLKTHWTRKENSPYFFNN
                     ENYFIRTLLNKDHLILQSQKNKNIIYVSYHSDKDPLTPANFKQQTMQILK"
BASE COUNT          859 a          352 c          374 g          874 t
ORIGIN      
        1 tataagaagg taatttatct ttcaaaaaat ctttaaaatt aatttcttct tcactttcat
       61 aaaaacaaat aatatcttct ttaaaaatac aagcactgtt tttaatattc acatgagaat
      121 ttatcacgct ttctatttct ccaagttcta ttctatgtcc catatatttt atctgattat
      181 ctgctcttcc gtagcataaa agctctccaa attcattata agaaacgata tctcctgttt
      241 tatagagtaa atctaaataa ttatcatgta aaggattttg aataaaagct tgtttggttt
      301 tttctttgtc attataatac cctaaagaca aagaagttcc acgcacgaaa agctcccctt
      361 taacacctat ttgtttagga cttatgaaat tcatattttc atcaaaaact aaaagttctg
      421 tgtttttgca cgcttttcct atcggtaaaa gttcttcatc tttaaaagtg cgattgatga
      481 tataaaaaga acatacatca gtgatttctg ttgggccata aaggttggca aataaggcat
      541 tgggtaagtg tttacgccaa atattgagct gtttattggg catgatttca ccacaaaaaa
      601 gcatcttttt taaggcgttt aaactaaaat tattcaaagc ttcagtattt gcaaaataaa
      661 tcagcaccga aggtacccaa aatatagtgc ttactttttc tttttcaagg cattctaaaa
      721 ttttatttgg aaaggcaaaa agatgattag gtaaaaggtg taaagtcgct cctgatttta
      781 cacttgaaaa aatatctaaa atgctattgt caaaataaaa tggcgcttga ttggctaaaa
      841 tttcattctc atcaaattta aaagtctcac acacccaaaa agtataatca atcacactct
      901 tatgagctat gcttactcct ttaggaatgc ctgtgctccc acttgtaaag aaaacataga
      961 gtaaattagt atctatatgt ttttctttgg catgctttat taaactctca tctatattaa
     1021 aactttcaaa gtcttgtgta taaagcgtag gtaaatctaa gttaaaattt aagtcctttg
     1081 aagtgataaa aagtttaggc tttaaaactt ctatgacttt ttctactctt tctttaggac
     1141 ttttttcatc taaaagtgta taaaaatttc cactgagtgc cactccaaaa aatgaaatca
     1201 aacaatcaat ccctttaggc aagatgatta aaacaggagc ttgagtagga ttatcatttc
     1261 ctaaagtttt taaaatttca ctggctagtt ttttagaaaa gagatcaaag tctttgtaag
     1321 tgatttcctt tctttctttg acaaagggtt ctacaaaagc agttttttcg ctaaatttga
     1381 ttaaactttt ttctaaaaaa tcatagatat gagttgtcat gatttacctt tttaattttt
     1441 tgtaatataa tatcgataaa ttaataaaaa aggcctttat atgctcataa accaaagctt
     1501 tgaaatcgat tcttgtgatg atgtagaatt aaatataaaa agaactagca aacttgaata
     1561 ccgtataagt tatgatgatg aaaaagagat taaagctata gtttttataa taggaggtta
     1621 tggagccaat gcaaatatat attttttaga ctcttataga aattatattg ctaaaaattt
     1681 tgatgttgta gcagtgcatg ttttttatca ttgtttttgt caaaggcgtt cggatgttga
     1741 aaagtattca acattagcag attttacaaa agatgattta aaattaatag aaaaagtgct
     1801 tcgtaaatac aatattccat gtgatcaatt agccaataat actgtagtta gtcattgtga
     1861 atatttgagc gagattatga cagaattaaa aatgttaaat cgattgcctt atgattttga
     1921 agaaagacta agtgcaactt ttattccttc gcgtggagaa tatcaaaatt ttggcattat
     1981 ggcagctatt gatcatatca atgctttaaa agatctagtt aaacgctttc caaaacttgc
     2041 agatttacca aaaatttatg ggggggggtc ttatggagga tacttagcct tgctcatagc
     2101 aaaaatagct ccttggtatg tggatggcgt gattgataat tcgggttcgg ctgttccacc
     2161 gcttaattat attattggta gagagttgga atttaaaagc aaagatacta atggggatat
     2221 gtatatgcag ggcgatcatt tttttgtgag ttgttttcta aaaacccact ggacgcgtaa
     2281 agaaaattca ccttattttt ttaataatga aaattatttt attagaacat tgttaaataa
     2341 ggatcatttg attttgcaaa gtcaaaaaaa taaaaatatt atttatgtga gttatcatag
     2401 cgataaagat cctctaacgc ctgccaattt taaacaacaa accatgcaaa tattaaaaa
//
LOCUS       DAPOLW010000169         2450 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.169, whole genome shotgun sequence.
ACCESSION   DAPOLW010000169 DAPOLW010000000
VERSION     DAPOLW010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2450
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.169"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            54..467
                     /gene="uraH"
                     /locus_tag="ROE18_001683"
     CDS             54..467
                     /gene="uraH"
                     /locus_tag="ROE18_001683"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HDX3651840.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
     gene            491..1831
                     /locus_tag="ROE18_001684"
     CDS             491..1831
                     /locus_tag="ROE18_001684"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HDX3651841.1"
                     /translation="MWAKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVIK
                     IGRIAGQFAKPRSSDFEELDGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAI
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLSGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKTRK"
     gene            1828..2157
                     /locus_tag="ROE18_001685"
     CDS             1828..2157
                     /locus_tag="ROE18_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HDX3651842.1"
                     /translation="MKLYGIKNCNSVKKAMDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(2170..2376)
                     /locus_tag="ROE18_001686"
                     /pseudo
     CDS             complement(2170..2376)
                     /locus_tag="ROE18_001686"
                     /inference="COORDINATES: protein motif:HMM:TIGR02174.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SelT/SelW/SelH family protein"
BASE COUNT          867 a          324 c          454 g          805 t
ORIGIN      
        1 attaataata ctcttgtata atattccttg taaatattat acaaggagag aaaatgtttt
       61 ctattaaaaa aactttatta atactagcaa gcgtgccaat gtttttgagt gctactgaat
      121 atcaattaag tactcatgtc ttggatatta cttctggaca acctgctcct aaagtaaaag
      181 ttgagcttta taagttggaa gcaaatcaac agtggaaaaa agtaagtgaa gaatttaccg
      241 aagaaaatgg tagaatagga gatttattac catatgaaaa agctgaaaat agggcttttg
      301 gaatttataa gcttaaattt tttacaaaag actattacac atcacacaaa ataaatactt
      361 tttatccttt tgtagaggta agttttgagc tttctaaaga tcagaaacat tatcatgttc
      421 caataaccct ttctcctttt ggttattcaa cttatagagg aagctgataa ataaaacgaa
      481 agaaaaaacc atgtgggcta agaattcttg gaaaaactat cctataaaac agcaacctat
      541 ctatccagat caagaggaaa tgaatagagt tttagcaaga cttgagaaac ttcctccttt
      601 ggtttttgct ggagaagtga gaaatcttca aaagtcttta gcaagagttt gtaaaaaaga
      661 agctttttta cttcaaggtg gagattgcgc tgaaagtttt gaaaattttg gcgctgtaaa
      721 tatccgtgat atgtttaaaa ttttacttca aatggctata gtacttacat ttgctggtgg
      781 atgtcctgtt ataaaaattg gtcgtattgc agggcagttt gccaagccaa gaagtagtga
      841 ttttgaagag ttagatggta taagtcttcc tagttatcgt ggtgatatta ttaatggttt
      901 tgaatttagt gaacaagcac gcattcctga tccacataga atgcttgaag cttattatca
      961 aagcgcaata acgctaaatt tgttgcgtgg atttgctaag ggtggtttag cagatttaca
     1021 tgaagtacat cgttggaatt tgggcttttt aaaaaagagt gaactccata agcaatatac
     1081 tgatatcagt gaaaaaattt cacaagcttt agcttttatg gaagcttgtg gaattaatac
     1141 aagtaatact ccaagtctaa gagaagttag tgtttatact tcacatgaag ctttactttt
     1201 gccttatgaa gaagctttaa ctagagtgga tagtttaagt ggagaaattt acgattgttc
     1261 agctcacatg ctttggatag gtgaaagaac aagggcgctt gatgaagctc atgtgcattt
     1321 tttaagtgga gtaaaaaatc ctttaggggt taaaatagga cctagtgcaa gtgctgatga
     1381 tatcatagct ttagcaaatg ttttaaatcc aaacaatgaa gaaggaagat taaatattat
     1441 tatccgcatg ggtgcagata aaattatcaa taatttgcca aaaattttct ctaaacttaa
     1501 aagtgaaggt ttaaatttag tatatagcat agatcctatg catggaaata cggtaaaagc
     1561 aggcaatttt aaaacacgtg agtttgataa aattatgcaa gaagtgagat ctttttttga
     1621 gattgcaata agcgaagggg tttatccagg tggagtgcat cttgaaatga ctgggaaaga
     1681 tgtaacagaa tgcacaggtg gtgcaagcaa tgttactgct caaagcttgg aagatcgtta
     1741 tgagactcaa tgcgatccaa gacttaatgc ggatcaagca ttagaacttg cttttttaat
     1801 cgcagatttg gtaaaaaaga ctagaaaatg aaactttatg gtattaaaaa ttgcaattct
     1861 gtaaagaaag ctatggatgc tttaacacaa aaaggtattg tgtttgattt tatggatatt
     1921 aaaaagatta atcaagatat tttatacaca tggttaaaac aaaaatcttt tgaagaactt
     1981 atcaatactg ctggattaac ttctaaaaaa cttggcttaa acaaagaaaa agttaaaaat
     2041 ttaaatgaaa aagaacttga aaaaattgta ttggaaaatc caagttgtat taagcgtcct
     2101 attatcgagt atgagcaaaa catatatatt ggtaaggaat atgagaaaat gttatgatag
     2161 agtgtttgat tacactctat tttttattaa ttgattaatt tcattttgat atggaaatct
     2221 ttcactttcg caattaataa gttgtgtttt agagaagata acttttccgt ctacttcaac
     2281 gataaaatca cctctgccgc caatttcaaa ttctacttca acatctttga aatcgctttg
     2341 tagttcttct gcaacccttg cagcttgtgg gcgataattt caaagattgc aataagcaat
     2401 ttttactttc atcatttcat cctttgagaa gttcttttta ttaagattaa
//
LOCUS       DAPOLW010000170         2428 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.170, whole genome shotgun sequence.
ACCESSION   DAPOLW010000170 DAPOLW010000000
VERSION     DAPOLW010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2428
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.170"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..1138)
                     /locus_tag="ROE18_001687"
     CDS             complement(<1..1138)
                     /locus_tag="ROE18_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HDX3651843.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDMKNMNQNMQERVLDTTLKLTQKSNAKRFFIHVINPKLGVMYE
                     KLKKLSEDKEGVFFDYFNTDFKQISTWLQNNDIGLVVTDIKNFEKEKQAFFDLKIPIM
                     KVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYY"
     gene            1168..2289
                     /gene="tgt"
                     /locus_tag="ROE18_001688"
     CDS             1168..2289
                     /gene="tgt"
                     /locus_tag="ROE18_001688"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HDX3651844.1"
                     /translation="MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISV
                     DRTILWAKEAITYHKNMQNKGIGIGQNIFGIIQGGTDYEERKRCALSLNEMPFDGLAI
                     GGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGMPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEVIDSTCSCYTCRNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            2291..>2428
                     /locus_tag="ROE18_001689"
     CDS             2291..>2428
                     /locus_tag="ROE18_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HDX3651845.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYGQKIFVYVGLNLETWLFND
                     EK"
BASE COUNT          868 a          377 c          357 g          826 t
ORIGIN      
        1 aataatataa aataactcca aaatcaagct gtttacttaa atcagtaatg acatttgcat
       61 tgttttcaag ttcactctca tcggcactta aaataatcgc ttctttaagc tcatcaaaag
      121 aagcttcacc caccttcata ataggaattt ttaaatcaaa aaaagcttgt ttttctttct
      181 caaaattttt tatatcggtt acaactaatc ctatatcatt attttgcaac catgtggaaa
      241 tttgtttaaa atccgtgttg aaataatcaa aaaacacacc ttctttatcc tcagaaagtt
      301 tttttaattt ttcatacatt acccctaatt taggattgat aacatgtata aaaaatcttt
      361 ttgcattgct tttttgagtt aattttaaag tagtatcaag cactctttct tgcatatttt
      421 gattcatatt tttcatatca attaaagcaa aaacattact tccaaaaggc ataggaaatt
      481 gccctgcttt gcctcttata ttatgaaaaa tactttgtaa aacaacagga tccccaacga
      541 tcaaaatgct atcatttggc tctagaacaa aagatggttt tacaaaataa attttagaat
      601 ttctataaat aaggactatg cgccaccttt tttgttgtat tgaacttatg tgcctataag
      661 caaaaataga ccctgctgga atttttactt ccataatctc tccaactcca agtcctatat
      721 actgagctgt taaagcaata tctggtaaaa aatccataaa tctacggctt aaagtcattc
      781 tagcatcagc taaatttgca tgagtatcat taacacttaa cccccaaaaa tccattattt
      841 ctatttctaa atttggattt aaagaacgca aagcctcata acttttttta gtttcaaatt
      901 catcttgcat ataaataaaa gcctgtttaa aatccttact cataatattt tcaagacgcg
      961 ctgtgcttgt aggatcaaaa taatgcaagt caatatactc actagaaata tttaagttat
     1021 ttttttcact attttgacac actactgtaa aaaagtaacc taagcctttt tcaaaacaaa
     1081 gcctttctaa gaaatgcttt gctaaaatac catctattat aattaaaata ttattcattt
     1141 taaactccaa aaaggaaatt ataacaaatg gaatttaaat taaagcataa agatggaatg
     1201 gcaagggttt gtgaaatcac taccgcacac agcacttttt taacccctgt ttttatgcct
     1261 gttggcacag taggagcggt taaaagtctt gatgctaatg atatgaaaaa tgagcttgat
     1321 gcaaaaatta ttttagcaaa tacctatcac atgtacttgc gtccaacttc caaagtagta
     1381 aaagattttg gaggtttaca tggatttacg aaatttgata gaagtttttt aaccgatagt
     1441 ggtggttttc aagctttttc tttaagtaaa aattccaaac attttaatga aggcatagaa
     1501 tttaaaagtc acattgatgg aagtcgtcat ctttttactc caaaaagtgt tttagatact
     1561 caatatgatt ttaattctga tattatgatg attttagatg atttagtagc cctacccgca
     1621 accaaagaaa gggttaaaat ttctgttgat cgcactatac tttgggcaaa agaggctatt
     1681 acttatcata aaaatatgca aaataaaggt ataggtatag ggcaaaatat ttttggtatt
     1741 atccaaggtg gtacagatta tgaagaaaga aagcgttgcg ctttaagttt aaatgaaatg
     1801 ccatttgatg gtttagctat aggtgggctt agcgtgggcg aagaaaacgc cttgatgtac
     1861 gaaacagtcc aaaacttaaa cccttatcta gatgaaaatc gtccaagata tttaatgggc
     1921 gtaggaatgc ctgaagattt agtagaaaat gttgagcgag gagtagatat gtttgactgt
     1981 gtgatgccaa ctagaaatgc aagaaatgga acatttttca caagttttgg aaaatttaat
     2041 atcaaaaaag cagaatttat caacgatcat gaagttatag attctacttg ctcatgttat
     2101 acttgtcgta atttttcaag gggttattta aaccatcttt ttaaagctaa agaacttact
     2161 ttttttcgtt tggcaagtct gcacaatcta cattattatc ttgaacttgc aagaaagatg
     2221 cgtgaagcaa ttttgaacaa ttcttttacg caatttaaaa gaaattttta tcacttaaga
     2281 ggcaaataaa atgctagaac tacacgaaaa tctaaaaaaa atcctacaag caaagaattt
     2341 agaaactttt tatagtgaaa tttatggaca aaaaattttt gtttatgtgg gattaaattt
     2401 ggaaacttgg ctttttaacg atgaaaaa
//
LOCUS       DAPOLW010000171         2413 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.171, whole genome shotgun sequence.
ACCESSION   DAPOLW010000171 DAPOLW010000000
VERSION     DAPOLW010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2413)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2413)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2413
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.171"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..402)
                     /locus_tag="ROE18_001690"
     CDS             complement(<1..402)
                     /locus_tag="ROE18_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651846.1"
                     /translation="MRKIIFILAFAFVIAILYIIFDFYVIKDSQKITKTDFSTPLICD
                     LNVKDCTYSFNNKKVLISLNPKPLQSLDVTNLKIVNLGNYNNLGIKIYGLNMYMGEIK
                     PKIHRLNSTDYESKIVLAACVLDTMRFRVEFM"
     gene            complement(406..825)
                     /locus_tag="ROE18_001691"
     CDS             complement(406..825)
                     /locus_tag="ROE18_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HDX3651847.1"
                     /translation="MKKILLLGALFAVNLWAVNDIEVKNAFVKQTPPHAQNSAIFLTI
                     FNNTNKDIALISAKSDISEVSELHTHIHKDGKMMMQKIPEIIIKAHSSTELKSGGYHI
                     MLLKLKKPIIKDTKVNLDLKFNNHKTIELKNIDSKEF"
     gene            complement(911..1381)
                     /locus_tag="ROE18_001692"
     CDS             complement(911..1381)
                     /locus_tag="ROE18_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651848.1"
                     /translation="MIRNFFIGMSFLGILFLAFYTLYDKKKESIFSLNTCQPLTCDLN
                     LQDCVFSFNKKNIEVSAYPKPIKIFNKTTIKIKNFPHYSNLKIKIYSLNSYIGDIIPK
                     FNIVNGDILINFIGRSITDDSRFRVEFLNNNAPTGFFFDFDVTMQKNFQTGNTH"
     gene            1537..>2413
                     /locus_tag="ROE18_001693"
     CDS             1537..>2413
                     /locus_tag="ROE18_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HDX3651849.1"
                     /translation="MLKRLALLIALSSLMLHASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAKVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNAYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNLENETMYRISF"
BASE COUNT          900 a          282 c          340 g          891 t
ORIGIN      
        1 cataaattct accctgaaac gcatagtatc taaaacgcaa gcagcaagaa ctattttact
       61 ttcatagtct gttgaattta atcgatgtat tttaggttta atttcgccca tatacatatt
      121 taatccataa attttaattc ctaagttgtt ataatttcct agatttacaa tctttagatt
      181 tgtaacatct aaagattgta agggtttggg atttagggaa attaagactt ttttattgtt
      241 aaaactatat gtgcagtctt taacattaag atcgcaaatc aatggggtag aaaaatcagt
      301 ttttgttatt ttttgagaat cttttattac ataaaaatca aaaataatat ataaaatagc
      361 aataacaaaa gcaaaagcta ggataaaaat aatttttctc attaattaaa attctttaga
      421 atcaatattt tttaactcta tggttttgtg gttattaaat tttaaatcta aatttacctt
      481 cgtgtcttta ataataggtt tttttagttt taaaagcatt atatggtaac ctccagattt
      541 aagctctgtg cttgaatgag cttttataat aatttcagga attttttgca tcatcatttt
      601 tccatcttta tgtatatgtg tatgcagttc actgacttca ctgatatcgc ttttggcact
      661 tattagagca atatccttat tagtattatt aaaaatagta agaaaaatag cactattttg
      721 cgcatgaggt ggagtttgtt ttacaaaggc attttttacc tctatatcat taacagccca
      781 aagatttaca gcaaaaagag cacctaagag aagaattttt ttcatattgt atccttattt
      841 ttataatatt aaatatttgt tcattatatc aaaaaatatt tttatttgaa tataaaattt
      901 tgaaaatttt tcaatgtgtg ttacctgttt gaaaattttt ttgcatagta acatcaaaat
      961 caaagaaaaa accagttgga gcattattgt ttaaaaattc aaccctaaat ctagaatcat
     1021 cggtaatgct tctacctata aaatttataa gaatatcacc attaactata ttaaatttag
     1081 gaatgatatc gcctatatag gaatttaaac tataaatttt aatctttaaa ttagaataat
     1141 gaggaaaatt cttaattttt atagtagttt tattgaaaat ttttataggt tttgggtagg
     1201 ctgaaacttc aatatttttt ttattaaaag aaaaaacaca atcttgtaaa tttaagtcac
     1261 aagttagagg ttggcatgta tttaagctaa atatactttc tttcttttta tcatataatg
     1321 tataaaaagc taaaaacaaa atgcctaaaa aagacattcc tataaaaaaa tttcttatca
     1381 ttatagacaa ccttttaaaa caagccttta tgatttgtaa aaattatatc ataaataagg
     1441 ctgcattgtt aatataatta atatttttta agaaaaaaaa tattataatc acaaacattt
     1501 ttgacttaaa aaatttgaaa tacctaagga aaaacattgt taaaacgact tgctttatta
     1561 attgcacttt cttcattgat gttgcatgcc tcagatcttg ttaaaattta tcttaatcaa
     1621 ggattagatg ctgttggtgt agcgattgaa aaagaattaa ctcaaaagga tttttggtta
     1681 agtgaaatag gagataaaaa tatttcactt ggatactatg atgataatgt tgctatcgtg
     1741 cttacaaata aaacagataa aattctccgt gtttattctt acgaggacgg aaaaataaga
     1801 aaagattttg aacaaaaaga aataataact ggattaatgg gtgataaaaa aatagaagga
     1861 gatttgaaaa ctccagtagg tttttatgag ttaggccgta agtttaatcc aggtgatcct
     1921 tattatggtc cctttgcttt tgccacaact tatccaaatt tacttgataa agtacaagga
     1981 aaaacaggtg gtggtatttg gatccatggc tatcctttag atggttctag acttgatgaa
     2041 tttaaaacaa gagggtgtat tgctttattt aataataatt tggagaaatt tgcaaaagtt
     2101 gtgcaagata aaaaagtttt tgttatgaca gaagaaaaag aaaaaattag agctaaaaag
     2161 gatcaaatcg ctagtttatt ggctgatctt tttacatgga aactagcttg gacaaatagt
     2221 gacactaatg cctatttaag tttttatgat gagcaagaat ttaaacgttt tgataaaatg
     2281 aaatttgaac agtttgcttc catgaaaaaa tctatttttt ctcgtaaaga agataaaaag
     2341 attaaatttt cagatattaa tatcagccct tatccgaatt tagaaaatga aactatgtat
     2401 agaatttcat ttt
//
LOCUS       DAPOLW010000172         2377 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.172, whole genome shotgun sequence.
ACCESSION   DAPOLW010000172 DAPOLW010000000
VERSION     DAPOLW010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2377)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2377)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2377
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.172"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..>2377
                     /locus_tag="ROE18_001694"
     CDS             <1..>2377
                     /locus_tag="ROE18_001694"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651850.1"
                     /translation="TSQSENQNTSEYLSNLKNEVINDFYKNKDKYDKEYEKYNFKDQN
                     LTNPMGNISEYKRDLYDYNKNPSMNADDLSNYILDKQSKFNASKPIFADDNEVARKSN
                     QFMRDLGDELQKSGRGRLLQDDDGSYWVQDNNGNYSKVQGSTMGDLYRGLRDNGASMA
                     LGTAGAIGGTMLGGGVGMVAGGALGASLGAGYDYYGNTKDTNQDMNLKEALMLMGENA
                     GLSLIGDAAFAGVAKGARALKNTYNMAKTEAQAGKDMIDGMAVKGGNLKENIGDKLRK
                     ISPSILNDLASQGSETSKAYARELIESGNRNYDDILQKSRAMPLEVNQGNALVDGVAS
                     KIKDFSNTAKNGFVKNTADNVTNSLNNISKNIGSKEAALNQQDLINLSFMNDDLANMA
                     RSVLANDPKMANKVANSLHLQDEAILKELNLNNASKADELYALRDARAKRAYDEFGKG
                     LDKLDELNPNGVKVDKQTIDDIVLNSSVYSESTPAMIKNFIHEAKSGALDGKSVKEIY
                     DRIDAIGNKIKESSSYNYKDFLNSLKDAFLENIVKSADNPQEAKEILTKIRKDYADFK
                     VYDKSKLGKKLEGSEKEISKDIDKILNETNPKKNYEAITKGLNDDEIKVLDNQIITRA
                     LEKNKVNIGDANNPKFAVNYKAVMDNFENFKPKSKSGQEKIEVLKTIGDLRTNFETVI
                     DGILNSKAKELGHGISTNFIERAKTMLVNNFTDYIAFYFMRLWEVGKRAGTRIQMRRG
                     FSNINNLKDFDRSAKEFIESIKDKTLKEEAQEARKEFNSKVKDLIKGDNFFM"
BASE COUNT         1020 a          253 c          453 g          651 t
ORIGIN      
        1 aacaagtcaa agtgaaaatc aaaatacaag tgaatattta tcaaatttaa aaaatgaagt
       61 aataaatgat ttttataaaa ataaagataa atatgataaa gaatatgaaa aatataattt
      121 caaagaccaa aatttaacaa atcctatggg caatattagt gaatataaaa gggatttata
      181 tgattataat aaaaatccat ccatgaatgc tgatgattta agtaattata ttttagataa
      241 gcaatctaaa tttaatgcct ctaaacctat ttttgctgat gataatgaag tagcaagaaa
      301 aagtaatcag tttatgagag atttaggcga cgagttgcaa aaatcagggc gtggaagatt
      361 attgcaagat gatgatggat cttattgggt gcaagataat aacggaaatt attctaaagt
      421 gcaaggtagc acaatgggtg atttatatcg tggattaaga gataatggtg ctagtatggc
      481 tttaggaaca gcaggtgcaa ttggcggcac aatgctaggt ggcggagttg gtatggttgc
      541 aggtggtgca ttaggtgcat ctttaggggc aggatatgat tactacggaa atacaaaaga
      601 tacaaatcaa gatatgaatt taaaagaagc tcttatgctt atgggcgaaa atgcaggact
      661 ttctttaata ggagatgcag cttttgcagg agttgccaaa ggagcaagag ctttaaaaaa
      721 tacctataat atggcaaaaa cagaagcaca agccggtaaa gatatgatag atggcatggc
      781 tgtaaaaggt ggtaatttaa aagaaaatat aggggataag cttagaaaaa taagccctag
      841 tattttaaat gatttagctt cacaaggtag cgaaacttca aaagcttatg caagagagct
      901 aatagaaagc ggaaatagaa attatgatga tatattgcaa aaatcaagag ctatgccttt
      961 agaagttaat caaggaaatg cattagttga tggagtggca agcaaaataa aagatttctc
     1021 aaatactgca aaaaatggtt ttgtaaaaaa tacagcagac aacgtaacta attcactaaa
     1081 taatattagt aaaaatatag gttcaaaaga agcagcactg aatcaacaag atcttattaa
     1141 tctttctttt atgaatgatg atttagctaa tatggcaaga agtgttttag caaatgaccc
     1201 taaaatggca aataaggttg caaactcttt acacttacaa gatgaggcta tattaaaaga
     1261 gttaaattta aataatgctt ctaaggctga tgagctttat gctttaagag atgctagagc
     1321 aaaaagagct tatgatgaat ttggaaaagg acttgataaa ctagatgaac ttaatccaaa
     1381 tggtgtaaaa gtagataagc aaaccataga tgatatagtt ttaaactcaa gtgtttatag
     1441 tgaaagcaca ccagctatga taaaaaattt tattcatgaa gcaaaaagcg gtgcattaga
     1501 tggtaaaagc gttaaagaga tttacgatag aattgatgct ataggcaata aaataaaaga
     1561 aagctcaagt tacaactata aagatttttt aaatagctta aaagacgcat ttttagaaaa
     1621 tatagtaaaa agtgctgata atccccaaga agcaaaagag attttaacca agattagaaa
     1681 agattatgca gattttaaag tatatgataa aagtaaatta ggaaaaaaac tagaaggaag
     1741 tgaaaaagag atatcaaaag atatagataa aatacttaat gaaactaatc caaaaaagaa
     1801 ttatgaagct ataacaaaag gacttaatga tgatgagatt aaagttttag ataatcaaat
     1861 aataactaga gctttagaaa aaaataaagt aaatatagga gatgccaata atcccaaatt
     1921 tgcagtaaat tataaagcgg tcatggataa ttttgaaaac tttaaaccaa aaagcaaatc
     1981 aggacaagag aagattgaag ttttaaaaac aataggtgat ttacgtacta actttgaaac
     2041 tgtaatagat ggtattttaa attcaaaagc aaaagaacta ggacatggaa taagtacaaa
     2101 tttcatagaa agagctaaaa caatgcttgt taataatttc actgattata tagcttttta
     2161 ttttatgaga ttatgggaag ttggcaaaag agctggaaca agaatacaaa tgcgaagggg
     2221 gtttagcaat ataaataatt taaaagattt tgatagatcg gctaaagaat ttatagaaag
     2281 tattaaagat aaaacactca aagaagaagc acaagaggct agaaaagaat ttaattcaaa
     2341 agttaaagat ttaatcaaag gcgacaactt cttcatg
//
LOCUS       DAPOLW010000173         2318 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.173, whole genome shotgun sequence.
ACCESSION   DAPOLW010000173 DAPOLW010000000
VERSION     DAPOLW010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2318)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.173"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            117..836
                     /locus_tag="ROE18_001695"
     CDS             117..836
                     /locus_tag="ROE18_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651851.1"
                     /translation="MKKYFNIFKIFTNKTNAKFGLGVCSVVLSSSVCFAAVQAASKDG
                     KIFYISEHSFKDNQVYDPQAEIFKKINGKNFYASKSKYPISNLTMIYNNPKSGNKNLS
                     KLEILTPDTSKEEIITAFSTLGTVSSDTQAVPSSFMPFIVTAYAQNTNATNNKLILEN
                     GELSSVYFCKPSIGDCGVPNNSQKGDRFKYLITAAFTDRGEGFNNQTILKENSYINNG
                     CRKYLHLALKWSSLYFRICSF"
     gene            766..>2318
                     /locus_tag="ROE18_001696"
     CDS             766..>2318
                     /locus_tag="ROE18_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651852.1"
                     /translation="MGVENIYTLPLNGVPYISGSVAFDDEAKDNKLILESNTKIDLHN
                     SQYFSDEEGKDIYDERITRLMGAFGINSNLQNNKVLIDSANIVLHGPDGEYTARSTFE
                     ILGALADVNNLKKYNVSKNSVIIKNLNLDLMVNSQNKITFYDAVLFGEIYGGRTLQGN
                     AEKNSIEVYHFNSLDHLNKNIKTHASLNLYGGYSNDGEANGNKIVFRLKKPLKISDNF
                     YGKNYYNLYGGFATEGANFNVFDIQNDLTYEKVPQNYSDKFTVYAARTLSGKANNNTL
                     SIKDSIISLPLYAFITSETTLDGIDYIADESNNNEVNFENIKSSKNLSLMINAKNVSN
                     NKINYNLIQSLTEASSLGKGSKIILKATQNANNNLIKLKDCSSAAVESSCIIKADKES
                     AFNKIIINNTAFSTASDKRQGYVGLIAGVSANSHDNIMELVNLNIDEYKNQDAIFLAP
                     SGTSDISNFKSYNNTLYLGGELNFFKDVNIDLLSGSVFHEVNKKGKIITQILPHQEDF
                     SKNNRLIIDT"
BASE COUNT          870 a          303 c          363 g          782 t
ORIGIN      
        1 tattgaaaaa taaaatatca aattaatatt ttataatcaa ctcaggacat acgggatagt
       61 gttgcaaata atcaatttgc gataaatcaa aaggttttat tttagtaaga aatgagatga
      121 aaaaatattt taatattttt aaaattttta caaataagac aaatgcaaaa tttggcttgg
      181 gcgtttgtag tgtggtttta tcttcttcgg tttgttttgc ggcggttcag gctgcaagca
      241 aggatggaaa aattttttat atttctgaac attcttttaa ggataatcaa gtttatgatc
      301 ctcaagcaga aatttttaaa aaaattaatg gaaaaaattt ctatgcttct aagtcaaaat
      361 accctatatc aaatttaact atgatttata ataaccctaa atctggaaat aaaaatttat
      421 ccaagcttga aattttaact ccggatactt caaaagaaga gatcataaca gcttttagca
      481 ctttaggaac cgtatcttca gatactcaag ccgttcctag ttcttttatg ccttttattg
      541 taacagctta tgcgcaaaat acaaatgcaa caaataataa acttatatta gaaaatggag
      601 aattatcttc tgtgtatttt tgcaaaccaa gcatagggga ttgtggagta cctaataatt
      661 ctcaaaaagg cgatcgtttt aagtatttaa ttactgcggc gtttactgac aggggggagg
      721 gatttaacaa tcaaaccatt ttaaaagaaa actcctatat caataatggg tgtagaaaat
      781 atctacacct tgcccttaaa tggagttcct tatatttcag gatctgtagc ttttgatgat
      841 gaagctaaag acaataaatt aatcttagag tcaaatacaa aaattgacct tcataattcc
      901 cagtattttt cagatgaaga aggtaaggat atttatgatg aaagaattac tcgtttaatg
      961 ggagcttttg gcataaattc taatttacaa aacaataaag ttcttatcga ttcagccaat
     1021 atcgtccttc atgggccaga tggtgagtat acagctcgtt cgacctttga aattttaggt
     1081 gctttagctg atgtaaataa tcttaaaaaa tacaatgtaa gtaaaaattc tgtaataatt
     1141 aaaaatttaa atttagattt aatggtaaat tcgcaaaata aaataacttt ttatgatgct
     1201 gttttatttg gagaaattta cggtggaaga acattacagg gtaatgcaga gaaaaattct
     1261 atagaagttt atcattttaa ctcattagat catcttaata aaaacattaa aacacatgca
     1321 tcgttaaacc tctatggtgg gtattctaat gatggtgaag ctaatggaaa taaaattgta
     1381 tttcgtctta aaaaaccttt aaaaatcagt gataattttt atggaaaaaa ttattacaat
     1441 ctttacggag gttttgctac agagggtgcg aattttaatg tttttgatat acaaaatgat
     1501 ttaacctatg aaaaagttcc acaaaattat tctgataaat ttaccgtata tgcggcaaga
     1561 actttaagtg gaaaagcaaa taataatacc ttaagtataa aagattctat tatttcattg
     1621 cctttatatg cttttattac aagtgaaact acgctagatg gtatagacta tatcgccgat
     1681 gaatcaaaca ataatgaagt aaattttgaa aatattaaat catctaaaaa tttaagtttg
     1741 atgatcaatg ctaaaaatgt ttcaaataat aaaataaatt ataatctcat tcagagttta
     1801 accgaagcga gttctttagg aaagggctca aaaattattt taaaagcaac tcaaaatgca
     1861 aacaacaatc ttataaagct taaagattgt tcttcggctg ccgtggaaag ttcgtgcatc
     1921 ataaaagcag ataaagaaag tgcttttaat aaaatcatca tcaacaacac agcttttagt
     1981 actgcctcag ataaaagaca aggttatgtg gggttgatag ctggagtgtc tgcaaattct
     2041 catgataata tcatggagct tgttaattta aatatagatg agtataaaaa tcaagatgct
     2101 atatttttag ctccatctgg aacttcggat atttcaaatt ttaaatctta taacaatact
     2161 ttatatttag gtggagagtt gaatttcttt aaagatgtaa atatcgattt gctttctggt
     2221 tctgtttttc atgaagtaaa taaaaaaggt aaaataatca ctcaaattct accgcatcaa
     2281 gaagattttt ctaaaaacaa tcgtttgatt atagatac
//
LOCUS       DAPOLW010000174         2295 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.174, whole genome shotgun sequence.
ACCESSION   DAPOLW010000174 DAPOLW010000000
VERSION     DAPOLW010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2295
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.174"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..2056
                     /gene="ccaA"
                     /locus_tag="ROE18_001697"
     CDS             <1..2056
                     /gene="ccaA"
                     /locus_tag="ROE18_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HDX3651853.1"
                     /translation="AVVVIGLVILISLITKQVSQNITKNTEDILASITKEYATQTQGI
                     FGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDNSAYSNFTYLYLIDPPE
                     YFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIANLQVVQDILKKAKYGEN
                     KVYIGRPIKMNLEGQDFDAVNVAIPIFDRKNQVVGVIGMTLDFSDIATYLLDPKGQKY
                     DGELRVLLNSDGFMAIHPNKNLVLKNLKDINPNKGAQETYKAISEGKNGVFNYIASDG
                     DDSYAAINSFKVQDSSWAVLVTAPKYSVFKPLKKLQLIILGASFIFIFVVLGVVYYCV
                     RKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGAMGRIINENIEKIQISL
                     EQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKDVLNRMLDVLQSKIGSNMN
                     EINRVFDSYKALDFSTEVFNAKGEVEITTNILGKEIKKMLLASSNFAKDLANQSEELK
                     NSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVASQADDIKNIVNVIKDI
                     AEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKSLSEIEANINILVQSVN
                     EVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITNEVNQIAAAILEDVNKK
                     RF"
     gene            2167..>2295
                     /locus_tag="ROE18_001698"
     CDS             2167..>2295
                     /locus_tag="ROE18_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDX3651854.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEIVLNSIISKNNV"
BASE COUNT          871 a          281 c          395 g          748 t
ORIGIN      
        1 agctgttgtt gttattggac ttgttatttt aatttcatta atcacaaaac aagtaagtca
       61 aaatattacc aaaaatacag aagatattct tgcttctatc acgaaagaat atgctactca
      121 aactcaagga atttttgggg aaatgatcgc tttaaataaa agtatttcag gtactttaac
      181 agaaatgttt agatcaacct ctaaagaaga tttagatata gacaatataa caaatattat
      241 aaccaatact tttgataata gtgcttattc taattttact tatttatatc ttattgatcc
      301 gccagaatac tttaaagaag agagtaaatt ttttaatact caaagtggaa aatttgttat
      361 gctttacgct gatgaagaaa aggataataa aggcggaata aaagcaatac aagctagtga
      421 tgaaatagct aatctgcaag ttgtgcaaga tatattaaaa aaagcaaaat atggggaaaa
      481 taaagtatat ataggccgtc ctattaagat gaatttagaa ggtcaagatt ttgatgctgt
      541 aaatgttgct atacctattt ttgatcgaaa aaatcaagtt gtaggtgtca taggcatgac
      601 tttagatttt tcagatattg ctacttatct tttagaccct aaaggtcaaa aatatgatgg
      661 tgaattaaga gttcttttaa attcagatgg ttttatggcg atacatccaa ataaaaatct
      721 agttttaaaa aatttaaaag atatcaatcc taataaaggt gcacaagaaa cttataaggc
      781 cataagtgaa ggaaaaaatg gagtttttaa ctatatagct tctgatggtg atgattctta
      841 tgctgcgatt aatagtttta aagtgcaaga tagttcttgg gcagttttgg taactgctcc
      901 taaatattca gtatttaaac ccttaaaaaa attacaatta attattcttg gtgcatcttt
      961 tatttttatt tttgttgttt taggagtggt ttattattgc gtaagaaaaa ttgtcgcatc
     1021 tagattgcct gtgattctta gttctttaga atcatttttc cgttttttaa atcatgaaaa
     1081 aattgaacct aaggctattg aaattcgtgc taatgatgag ctaggagcaa tgggaagaat
     1141 cataaatgaa aatattgaaa agattcaaat atctttagaa caagatcaaa atgctgtaga
     1201 tgaatcggtg caaactgcta gagaaatcga aaagggtaat ttaactgcaa gaattactaa
     1261 aaatcctata aatcctcaat tagtagaact taaagatgtt cttaatagga tgcttgatgt
     1321 tttacaaagt aaaattggtt ctaatatgaa tgaaattaat agagtttttg atagttataa
     1381 ggctcttgat tttagtacag aagtatttaa tgctaaaggt gaagttgaga ttacaactaa
     1441 tattttaggc aaagaaatta aaaagatgct tttggcttct tcaaattttg ctaaagattt
     1501 agccaatcag tcagaagagt taaaaaattc tatgcaaaaa cttgctgatg gctctaatgc
     1561 acaagcgagt tctttagaac aatcggctgc agctgtggag gagattaatt cttctatgca
     1621 aaatgtaagt ggaaaaacag ttgaggttgc ttcacaagct gatgatataa aaaatattgt
     1681 caatgtgatt aaagatatcg ctgagcaaac gaatcttctt gctttaaatg cagctattga
     1741 agctgcacgt gctggagaac atgggcgtgg ttttgcagtt gttgcagatg aggtaagaca
     1801 gcttgcggaa agaacaggaa aatccttatc tgaaatcgag gcaaatatta atatacttgt
     1861 tcaaagcgta aatgaagtag cagaatctgt aaaagaacaa acagcaggaa tcacacagat
     1921 taacgatgct atagcacaac ttgaaactgt aactaaggaa aatgtcgaag ttgcaaatgt
     1981 caccaataat ataacaaatg aagtcaatca aattgctgcg gcaattcttg aagatgtgaa
     2041 taaaaaaaga ttttaaaaaa gctcattttt gagcttttaa attttttcta tattatttaa
     2101 aatttttaaa cacaaaacaa gtaataaaat aatattattt ttcaaagcta atatcaagga
     2161 aaaataatga aaattgattg tcgcaatcta tcttgtcctc agcctatagt tgaaacaaaa
     2221 aacgctcttg aaaaacttca agaaaatgaa attttagaaa ttgttttaaa ttctattatt
     2281 tcaaaaaata atgtt
//
LOCUS       DAPOLW010000175         2255 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.175, whole genome shotgun sequence.
ACCESSION   DAPOLW010000175 DAPOLW010000000
VERSION     DAPOLW010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2255)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2255)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2255
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.175"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            77..1141
                     /locus_tag="ROE18_001699"
     CDS             77..1141
                     /locus_tag="ROE18_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDX3651855.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFALTKGVKNIDELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSEEELKKFLDAIENADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYISKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
     gene            1131..>2255
                     /locus_tag="ROE18_001700"
     CDS             1131..>2255
                     /locus_tag="ROE18_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HDX3651856.1"
                     /translation="MTLENYAVFGKYFYHDLKHTLKAFNHKESKKCFKFIEKYKNDFY
                     ILMLTDYELYRYFQDKNFTSKKAYLSVFAFKKRKKFQKEDIDEEKFIPEFINFLDQDN
                     YKENFIKVKEAISKGRVYQINLTQNFKFHSKMDSFELFKLLLSRQDTEFKAFIKDETR
                     EILSFSPELFFKTKKRKIFTKPMKGTIKRDKDPIKDEENKIFLQNDTKNLSENVMICD
                     LLRNDLSKIITKKSLKTKLFEIQSHPTLHQMTSSVQGKLKKNISLYQIFKALFPCGSI
                     TGAPKLESIKFIEELEQRDRGIYCGTIGLIRKNKNKFSVAIRTLEKQDEIYTYSTGSG
                     LVWDSKFKDEFEELKLKSAILNPCDFHLFETMYFKNSQILF"
BASE COUNT          906 a          296 c          317 g          736 t
ORIGIN      
        1 ctttttttta ctaagttaat actaaaatac cttttctagt taaaaagcta aaattttaga
       61 tttaggaaaa gtttttatga aatacccttt agattgtgaa gaaaattttg aaaaatcatt
      121 cttattttgg ttagcaaaat atgtaaaatt taaactcaac tcactatcta acaaagagtt
      181 aaaaaatcca caagctttag cagaagttaa ttttgctctt acaaaaggtg taaaaaatat
      241 tgatgaactt gacgctctag caaaaaaagc aagaaatgct ggtttaagtg gagttaatac
      301 ttattttaat cctttaaaaa aagtatttga atatttaaat ttttataagc tttactcttt
      361 aaaacagatt gatgaagaac ttattgtaga agttttagca agtataacag gtgctttatc
      421 agatgcaagc aaaaaaaatt accgtattgc tgtgattaat ttttttgatt ttttagacaa
      481 gcaaaatgaa gaagatgaaa aagcacatat tttcgatatc aatcttaaaa actgggcagg
      541 tatagcaggt tctaaagggg taaaattacc tgaatttatg agtgaagaag agcttaaaaa
      601 atttcttgat gctattgaaa atgcagattt taaaaacaat accatacgca ataaacttat
      661 tattaaaatc atcattttta caggcatacg ggtaagtgaa gctatcaata tcaaaatggg
      721 tgatattagc gaagaaaacg atctttatat cataagaata agagctaaag gcaataaata
      781 tcgtgttgta atgataaaaa aagaacttat ttacgatttg cttaaaaatg taagtattaa
      841 ttatataagt aaagacgccc tactttttgt caataaaaaa ggcactccac tgactcaatc
      901 ttatgtcagt cgcatagtag aacagctttt atttcgcgca ggaattcgca aacaaaaaaa
      961 tggtgctcat atgttgcgtc atacttttgc caccctgctt tataaaaagc aaaaagattt
     1021 agttttagtt caagaagctt tagggcatgc aagtttaaat acctcaagaa tttacactca
     1081 ttttgataat gataaattaa aacttgccgc acaggttgca aaggaattaa gtgactcttg
     1141 aaaactatgc tgtttttggt aaatattttt accatgattt aaaacacact ttaaaagcct
     1201 ttaaccacaa agaaagtaaa aaatgcttta aatttataga gaaatataaa aatgattttt
     1261 atattttaat gcttactgat tatgaactat atagatattt tcaagataaa aatttcacaa
     1321 gcaaaaaggc ttatttgtct gtatttgctt ttaaaaaaag aaaaaaattt caaaaagaag
     1381 atattgatga agaaaaattt attcctgaat ttataaattt tttagatcaa gataattaca
     1441 aagaaaattt catcaaggtt aaagaggcaa tctccaaagg aagagtttat caaatcaacc
     1501 tcactcaaaa ttttaaattt catagcaaaa tggattcttt tgaacttttt aaacttttac
     1561 tttctagaca agatactgaa tttaaagctt ttataaaaga tgaaacaaga gaaattttgt
     1621 ccttctcacc tgaacttttc ttcaagacca aaaaaagaaa aatatttaca aaacctatga
     1681 aaggcacaat taagcgtgat aaagatccta taaaagatga agaaaataaa attttcttgc
     1741 aaaatgatac aaaaaatctg agtgaaaatg ttatgatttg tgatctttta cgcaacgatc
     1801 tttcaaaaat catcacaaaa aaaagcttaa aaaccaaact ttttgaaatt caaagtcacc
     1861 ctactttaca tcaaatgact tcaagcgtac aaggaaaact taaaaaaaat atttctttat
     1921 atcaaatttt taaagctctc tttccttgtg gttctattac aggtgctcca aagcttgaaa
     1981 gcattaaatt tattgaagaa ttagaacaaa gagatcgtgg tatttactgc ggaactatag
     2041 gtttaatacg caaaaataaa aataaattta gcgtagccat acgcacctta gaaaaacaag
     2101 atgaaattta tacttatagc acgggtagcg gcttggtttg ggactcaaaa tttaaagatg
     2161 aatttgaaga attaaaactt aaaagtgcaa tcttaaatcc ttgtgatttt catctttttg
     2221 aaaccatgta ttttaaaaat tctcaaattt tattt
//
LOCUS       DAPOLW010000176         2230 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.176, whole genome shotgun sequence.
ACCESSION   DAPOLW010000176 DAPOLW010000000
VERSION     DAPOLW010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2230)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2230)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2230
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.176"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            1..2230
                     /locus_tag="ROE18_001701"
                     /pseudo
     CDS             1..2230
                     /locus_tag="ROE18_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="internal stop; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
BASE COUNT          941 a          303 c          293 g          693 t
ORIGIN      
        1 agcttttaca cacctcaatc catagctaat tttttaatcc aaagtgcttt aaaagacaaa
       61 ctaaacaatg aaaatatttt gaaatttaaa atactagaca atgcttgcgg tagtggacat
      121 tttttagttg gagttttaaa tgctattaca cacattgttt tatcagattt tgatcatttt
      181 acaaatttaa aagaacttta cgaagaagaa aaagaaaata ttttaaacta tataaaagat
      241 tttgtgcaag actatgaagt agatgagagt gatattttaa aacgactttt actaaaacgc
      301 attatttatg gggtggattt aaaccctttt agcatagagc ttactaaact tagcctttgg
      361 atagatagtt ttatctttgg aaccccactt tcttttatag aacaccacat aaagtgcggc
      421 aatgctttga taaattctaa tctaagtgat tttaaagatt tgataaaaca aaactcaagc
      481 aaccttttta caaattccat aacacaagaa tttgaaattt tacaagaagt atttgaaaaa
      541 cttgacaacc taaaagatac caacgaagaa caaatcaaac aatctaaaca aatctatcaa
      601 aatgaaatca caccaaaact taataaacta aatttatatc taaactatat caacacgctt
      661 cattttgtca acaaagaaga attacaaatt ctaaaagccc taagccaaga tgatatacaa
      721 aatttaagcc aaaatgaaca agcaaaaaac atcattagca aatatcaaaa agaatttaac
      781 ttctttaact atgagttaga atttcctgaa atcacagaaa atcaagtctt taaaggcttt
      841 gatatcatca taggtaatcc accttgggat aaaactaaat ttagtggcga tgatttcttt
      901 ccacaatata aaagcgatta tagaagctta atcgctagca agaaaaaaga aattcaagac
      961 aatttgctag ctaaagatta tataaagcaa aattacgaaa aataaaaagc atatataaat
     1021 gatttaaacg agtattataa aaaagcctat cctttaaaca aaggcagtgg agatggaaat
     1081 ttatttcgtc tttttgtaga aaaaaatctt tctcttttaa aacaagatgg aaatttagct
     1141 tatgtacttc ctagtgcttt gatgtttgaa gatggaagct taactttaaa aaaagaaatt
     1201 ttagaaaata aaactttaga atatttttat agttttgaaa atagacaagc tatatttgct
     1261 gatgtgcata aaagctataa atttgctctt atacaagtaa aaaacacgca agcaaatcac
     1321 actcataaaa tcaaaatgat gttttataaa acagatataa actcactaaa aaacaaagat
     1381 gaaattttaa ctctaagctt aaaagatatc aaaaaactaa gcccaactca cctggcctta
     1441 atggagttaa aagacaaaca agctttaaaa attctaagaa aatgctacaa tgcttttcaa
     1501 aacttgtctt ttgattatat agattttgta aatgaacttc atatgacaaa tgataaagat
     1561 ttgtttatag aagagtttag ggaaggactt ttacccttat atgaaggtaa aatgatacat
     1621 cagtttgata caaattttag ccaagctact tattttttag aaaaggctaa atttgacgag
     1681 cgtttaaaaa gtaaagaact ttcaagagct aaaaaagcta ctgggaaaga attaaatcct
     1741 aaattaataa aatacgatag agaatttttt agacttggat atagaactat tgcaagcgat
     1801 acaaatgaaa gaaccttgat agcttcttta ttgccaaaaa attgcggatg tggaaatagt
     1861 atttattcta atattccaaa acaatatatt ttaaaagatg ataaaatttg tatagatata
     1921 ataccttatg aaaaaatttt atttactttg gctttgttta attctttagt ggttgatttt
     1981 atcataagaa atatggtgca aatcaatgta aataaaactt acctagaaag aattcctctg
     2041 cctcaaccaa gtgatgaaga aattcaaaac aatgaaattt ataaaaccct cgctaaaaat
     2101 gccttgcttt tacaacttta caatgataaa aatcatcatt ttgatgagct aaaacaagaa
     2161 tttagtataa aaaatgaaga aattccaaaa actaaaaaag cttatgatat cttaagagca
     2221 aaaaatgatt
//
LOCUS       DAPOLW010000177         2220 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.177, whole genome shotgun sequence.
ACCESSION   DAPOLW010000177 DAPOLW010000000
VERSION     DAPOLW010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2220)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2220)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.177"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            160..543
                     /gene="ctb"
                     /locus_tag="ROE18_001702"
     CDS             160..543
                     /gene="ctb"
                     /locus_tag="ROE18_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HDX3651857.1"
                     /translation="MKFETINQESIAKLMEIFYEKVKKDKDLGPIFNNAIGTSDEEWK
                     EHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEIWLKLFEESLNIVYNEEM
                     KNVILQRAQMIASHFQNMLYKYGGH"
     gene            complement(540..>2220)
                     /gene="recG"
                     /locus_tag="ROE18_001703"
     CDS             complement(540..>2220)
                     /gene="recG"
                     /locus_tag="ROE18_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HDX3651858.1"
                     /translation="ITIKSVSSRKNQLFGLGFCEEWQENISFVFFHPRAWHFGICKVG
                     KELIFNAKLSHFNHTWQFNNPKILTSFEGFSPKYQILGLKDTKIAAFIHKYLNYENLK
                     ESGIEDKYIHFLLNLHAYDEKSFFMFENLQNFSKDLKYIEIYNFLKRLKAKKTHFKAH
                     QINVFNIANWLKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGA
                     ALMVYPKQAILMAPTSILAYQLYEEAKKFLPDFMNILFIKGGKKEKDLEQNIQKANLV
                     IGTHALIHLESHNAVLVMIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLS
                     MIQSELLNFSFIKQMPFKKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLLSAS
                     DKIPYLSLEQAKEYWQSHYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISL
                     PRLSMIVIVGAERLGLATLHQLRGRVGRVGLKSACYLYTKLKEIPSRLKEFASTLDGF
                     KIAELDLKNRLSGDLLDGFMQHGNEFKFFDFSKDEEILEKVKKDLAKKLPN"
BASE COUNT          786 a          364 c          290 g          780 t
ORIGIN      
        1 atactatttt tttgaaattt ttttaatttt cctacactag ataaaagttc taaataatct
       61 ttcattatat aatatttcca ttcttaactt atgttaaatt taatttatct tatttttgct
      121 atattaacgc cataaaatta acatttaaga aaggcttata tgaaatttga aacaattaat
      181 caagaaagca tagcaaaact catggaaata ttttatgaaa aagttaaaaa agataaggat
      241 ttaggtccta tttttaacaa tgctattgga acaagcgatg aagaatggaa agaacataaa
      301 gcaaaaatag gaaatttttg ggcaggcatg cttttaggcg aaggtgatta taatgggcaa
      361 cccttaaaaa agcacttaga tctacctcct tttcctcaag agttttttga aatttggcta
      421 aaactttttg aagaaagttt aaatatagtt tataatgaag aaatgaaaaa tgtcatttta
      481 cagcgtgcac aaatgatagc ttcacatttt caaaatatgc tttacaagta cggcggacat
      541 taatttggca atttttttgc caaatctttt tttacctttt ctaaaatctc ctcatccttg
      601 gaaaaatcaa aaaatttaaa ctcatttcca tgttgcataa aaccatcgag caaatctcca
      661 ctcaaacgat ttttaagatc aagctctgct attttaaacc catctaaagt gctagcaaat
      721 tcttttaaac gactcggaat ttctttaagc ttagtataaa gatagcaagc acttttaagc
      781 cctacacgac ctacacggcc acgaagttga tgtaaagtag caagtcctaa acgttccgct
      841 cctacaatca ctatcatact caatcttggc aaagaaatac ctacttccac cactgtagtg
      901 cttagtaaaa tatttccctc gtctctaaaa cgctctaaaa tttcatcttt ttgtttatct
      961 tttccatgag ttacaaaaac tttttcataa tgactctgcc aatattcttt ggcctgctct
     1021 aaagaaagat aaggaatctt atcactagca ctcaataagg gataaataat gataatttga
     1081 tgatttttag cgatttcttc tttgatcttc tcgctaagct tagaaaaacc ttcattttgt
     1141 atgcaataag ttgtaatatc ttttttaaaa ggcatttgtt taataaagct aaaatttaaa
     1201 agttcagatt gtatcatgct taaagttctt ggaataggcg tagctgaaaa ctgtataaaa
     1261 tgaggggcaa attcttgttt atttaaagaa tgaattttct cacgctgagc tgatccaaaa
     1321 cgatgttgtt cgtctatcat tacaagtacg gcattatggc tttctaaatg aattagagca
     1381 tgagtgccta taacaagatt tgctttttgg atattttgtt ctaaatcttt ttctttttta
     1441 ccccctttaa taaacaaaat attcataaaa tcaggtaaaa atttcttagc ctcttcataa
     1501 agctgatacg ctaaaatact agtaggtgcc attaaaatag cttgcttagg ataaaccatc
     1561 aaagccgcac caagtaaaac caaggtttta ccacacccca catcacccat aatcacacgc
     1621 cttttggctt cttttgagtg taaatctttt tctatgtctt ttaaggcatt aagctgatct
     1681 ttagtaagag aaaaaggcaa atctttaagc caattggcta tattaaaaac attgatttga
     1741 tgagctttaa aatgcgtttt tttagctttt aaacgcttta aaaaattata tatttctata
     1801 tattttaaat ctttgctaaa attttgcaaa ttttcaaaca taaaaaaact tttttcatca
     1861 taagcatgca aatttaaaag aaaatgtata tatttatcct ctatgccact ttcttttaaa
     1921 ttttcataat taagatattt atgtataaaa gcagcaattt ttgtatcttt taaacctaaa
     1981 atttgatact ttggactaaa accctcaaaa gaagttaaaa ttttaggatt gttaaattgc
     2041 caagtgtgat taaaatgcga gagtttagca ttaaaaataa gctcttttcc taccttacaa
     2101 ataccaaaat gccaagctct aggatgaaaa aacacaaaag aaatattttc ttgccattcc
     2161 tcacaaaaac ctaaaccaaa aagttgattt tttcttgaac taacgctttt tatagtgatt
//
LOCUS       DAPOLW010000178         2211 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.178, whole genome shotgun sequence.
ACCESSION   DAPOLW010000178 DAPOLW010000000
VERSION     DAPOLW010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2211)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2211)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2211
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.178"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            150..974
                     /gene="panB"
                     /locus_tag="ROE18_001704"
     CDS             150..974
                     /gene="panB"
                     /locus_tag="ROE18_001704"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HDX3651859.1"
                     /translation="MRKSMISFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
     gene            985..1833
                     /locus_tag="ROE18_001705"
     CDS             985..1833
                     /locus_tag="ROE18_001705"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HDX3651860.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRPGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            1830..2210
                     /locus_tag="ROE18_001706"
     CDS             1830..2210
                     /locus_tag="ROE18_001706"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HDX3651861.1"
                     /translation="MNITLLKSKIHRASVTEARLDYIGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTATKITNYEKHGAIF"
BASE COUNT          811 a          308 c          419 g          673 t
ORIGIN      
        1 taacatgaac tgaaattttc taaaattgta accattaaag caatccatcg attaaatata
       61 acttacttta tcattcattt actatttatg aaaaattata tgctagtttt ttgcttatta
      121 ttttatagct aaaaattgag gtatgcaaaa tgagaaaaag tatgattagt tttttggaaa
      181 aaaaggccaa aaatgaaaaa ataaccatgg taagtgcgta tgattatcat agtgcaagaa
      241 ttttagacaa tagcgatata gatattatat tggttggaga ttcattagcc atgacggtac
      301 ttggtatgca agatacttta agtgttacta tggatgaaat gttgattttt accaaagctg
      361 tttctcgcgg agctaaaaag tctttcgtac ttgctgatat gccttttatg tcttatcaaa
      421 gttcagatcg tgacgctatc ttaaatgcct caagatttat caaagaaagc cacgcaaatg
      481 gggtaaaagt ggaagggggt atagaaatcg caagtaagat taaattgatt tcccaatcag
      541 gaatacccgt cgttgctcac ctaggactaa ccccacaagc tgtaaatatg ctaggtggct
      601 atagggttca aggtaaagat ttacaatcag cccaaaaaat tatagatgat gcaaaagctg
      661 tgcaagatgc gggtgcttgt atgttggttt tagaatgtgt gcctgtaaaa ctagcacaaa
      721 aaataagctc tattttagaa attccaacaa tcggcatagg ttcaggcaaa tactgcgatg
      781 gacaagtttt agtttatcac gatcttttgg gtttaaataa agattttaaa gcaaaatttg
      841 taaagcattt tgataaaatt gatcctcaag taggagttga aaaatataga gatgaagtta
      901 aaagcggtat ttttccttcc caagagcaca gctttgatta tttagatgat gaattattag
      961 ataaattata ctaaggatac aaatatgcaa gtcattactt ctgtcaaaga agcaaaacaa
     1021 attgtaaaag attggaaatc acatcaactt agtataggct atgttccaac catgggtttt
     1081 ttacacgatg gacatttaag tttagtcaaa catgccaaaa cacaagataa ggttatagta
     1141 agtatctttg taaatcctat gcaatttggg cctaatgaag atttttctag ttatccaaga
     1201 gatttagaac gcgacattaa aatgtgtcaa gataatggcg ttgatatggt ttttatcccc
     1261 gatgcaactc aaatgtatct taagaatttt agcacctatg tagatatgaa tacgatcact
     1321 gataaacttt gcggggctaa aagaccgggg cattttagag gcgtttgcac ggttttaact
     1381 aaatttttta atatcctaaa ccctgatata gtctatatgg ggcaaaaaga cgcgcagcaa
     1441 tgcgtagtcg ttaggcatat ggttgatgat ttaaattttg atttaaaaat tcaaatttgt
     1501 cctatcatta gagaagaaga tggcttagct aaaagctcta gaaatgtata tcttagcaaa
     1561 gaagaaagaa aagcgtcact agctatatct caaagcattt ttttggctga aaaattagtc
     1621 cgagagggag aaaaaaatac ttctaagatc atccaagcta tgaaagatat tttagaaaaa
     1681 gaaaaactaa tcaaaatcga ttatatagaa ttagtcgatt ttaacaccat ggaaaatatc
     1741 gaaaatatca ctgataatgt tttaggagcg gtggctgctt ttgttggaaa aacaagactc
     1801 attgataatt ttttagtaca aggattaaaa tgaatatcac tttactcaaa tcaaaaatac
     1861 atcgcgcaag cgtaacagaa gctaggcttg attatatagg aagtataagt atagatgaaa
     1921 aattattgca agcgagtgga attttagaat acgaaaaagt ccaagtagtc aatgtcaata
     1981 atggcgctag atttgaaacc tataccatag ccacgcaaga agaaggagtt gtatgcttaa
     2041 atggtgctgc ggctcgtctt gcagaagtgg gagataaggt gatcatcatg tcttatgctg
     2101 attttaatga agaagaagca aaaacattta aaccaaaagt tgtttttgtg gatgaaaata
     2161 acactgctac aaaaataaca aattatgaaa aacacggagc tattttctaa c
//
LOCUS       DAPOLW010000179         2148 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.179, whole genome shotgun sequence.
ACCESSION   DAPOLW010000179 DAPOLW010000000
VERSION     DAPOLW010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2148)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2148)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2148
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.179"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            127..558
                     /locus_tag="ROE18_001707"
     CDS             127..558
                     /locus_tag="ROE18_001707"
                     /inference="COORDINATES: protein motif:HMM:NF014599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HDX3651862.1"
                     /translation="MNKIKQGAFQISSIEIKKFNFEQNPEIKEGDIDKFEFSRTIGAI
                     AQKKDNKEKDKFLVQLDLNIKANNNNNKNIYNISTSIVSLIEFEVKDEQNEFLLNNAV
                     AIMFSYLRPMIAQITMLSGFPPYHLQPVSFEQFKVDIINNN"
     gene            558..1208
                     /locus_tag="ROE18_001708"
     CDS             558..1208
                     /locus_tag="ROE18_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HDX3651863.1"
                     /translation="MKKLILLPLLSTLAFADYTQYKPSEDFAKYFTKQNCSQVLDKFY
                     YLNCYDYNYKGTKAVAYKLEAENLKGEQIKKRPRFEDDTNIPKKYRTTWSDYKNSGYD
                     RGHTISNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQVALKLGEIEVL
                     NFINYDNNPQRIRNQIAIPSSYTKILKGDNFKECYQVPNHEVEDENIKKYKVDCDK"
     gene            1198..2025
                     /locus_tag="ROE18_001709"
     CDS             1198..2025
                     /locus_tag="ROE18_001709"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651864.1"
                     /translation="MINNDFSYEKIMIQLNKCAEAKLKKELSNYNSKDYFAEYLKEIY
                     FSIPPKPRKVFISKEIKERTLNKKIRKTINKIEYKLKKGEDVNPFLSKRFDNNDKMFS
                     SFGIHHFHLGEYLKNKQEYDRTGGLLYCFLPYYNNDSIYFIDVLPHKQWCNQELFDII
                     QKNWPDVLQYTQSFTVKDISEKDIKKLRKYNINFIPSLKSGELVFSNFGYMSNGDPTY
                     VYLCKMNIRKQIEHIYKTYHINISDTEIIDFEINNNLILKNIAIKNKISSKIDLYNF"
BASE COUNT          947 a          260 c          266 g          675 t
ORIGIN      
        1 agaaaacaca ctagacaaaa aaataattta actgaaaaac aatatccaaa aaacaataaa
       61 atacaaattg aaaatgtgaa atatgataat aacttttatc aggcagctta aatataagga
      121 gttacaatga ataaaataaa acaaggtgca tttcaaattt catcaataga gataaaaaaa
      181 ttcaatttcg aacaaaaccc agaaattaaa gaaggtgata ttgataaatt tgagtttagc
      241 aggactatag gtgctattgc acaaaaaaaa gataataaag aaaaagataa attcttagtt
      301 cagttagatt taaatattaa agcaaataat aataataata aaaatattta taatatatca
      361 acatcaatag tatcattaat cgagtttgaa gttaaagatg aacaaaatga atttttacta
      421 aataatgctg tggcaataat gttttcatat ttgagaccaa tgatagcaca aatcacaatg
      481 ttatctggct ttcctcctta tcatctacaa cctgttagtt ttgaacaatt caaagtggac
      541 attataaata ataattaatg aaaaaactca tacttttacc attgttatcc actctagcct
      601 ttgctgatta tacgcaatat aaaccaagcg aagattttgc taagtatttt actaagcaaa
      661 actgctcaca agttttagat aagttttatt atctaaattg ttatgattat aattataaag
      721 gcactaaagc tgtagcttat aaattagaag cggaaaattt aaaaggcgaa caaattaaaa
      781 aacgcccacg atttgaagat gatacaaata tccctaaaaa ataccgcacc acatggagtg
      841 attataaaaa cagcggttat gatagagggc atactatttc taatgcttca atgagaaaaa
      901 caactcaagc ccaaagaagc acttttttaa tgagtaatat tactccgcaa aatccacaaa
      961 ttaatcaaaa agtatggaat aagattgaaa aaagagaaag acaagtagct ttaaagcttg
     1021 gagaaattga agttttaaat tttattaatt atgacaataa tccacaaaga ataagaaatc
     1081 aaattgccat tccaagctct tacactaaga ttttaaaagg tgataatttt aaagaatgtt
     1141 accaagtgcc aaatcatgaa gtagaagatg agaatataaa aaaatataag gttgattgtg
     1201 ataaataatg atttttctta tgaaaaaatt atgatacaat taaataaatg tgctgaagca
     1261 aaattaaaaa aagaattatc aaactataat tcaaaagatt attttgcgga atatctcaaa
     1321 gaaatatatt tttctatacc acctaaacct agaaaagtat ttatatcaaa agagattaaa
     1381 gaacgaactc taaataaaaa aatacggaaa acaattaata aaatagaata taaactaaaa
     1441 aaaggagaag atgttaatcc ttttcttagt aaaagatttg ataacaatga taaaatgttt
     1501 tcttcttttg gaattcatca ttttcatcta ggagaatatc ttaaaaataa acaagagtat
     1561 gatagaactg ggggcttatt gtattgtttt ttaccgtatt acaataatga ttcaatatat
     1621 tttatagatg tattacccca taaacaatgg tgtaatcaag aactatttga tattatacag
     1681 aaaaattggc ccgatgttct tcaatataca caatctttta ctgtgaaaga tatatcagaa
     1741 aaagacatta aaaaattaag aaaatataat attaatttta taccttcctt aaaatcaggt
     1801 gaacttgttt tttcaaattt tggatatatg tctaatgggg atcctacata tgtatattta
     1861 tgtaaaatga atataagaaa acaaatagaa catatttata aaacatacca tattaatatt
     1921 agcgatacag aaattataga ctttgaaatt aataataatt tgatattaaa aaatatagct
     1981 attaaaaata aaatatcaag caaaatagat ttatataatt tttaatcaat accccataaa
     2041 ccttttatat ccatcgcatt aatccttcca attttctaaa aatgttttta aggatttttt
     2101 tggtttttta tacttatata accaaatgct aaaaaataag cttaaaac
//
LOCUS       DAPOLW010000180         2067 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.180, whole genome shotgun sequence.
ACCESSION   DAPOLW010000180 DAPOLW010000000
VERSION     DAPOLW010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2067)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2067)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.180"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..516
                     /locus_tag="ROE18_001710"
     CDS             <1..516
                     /locus_tag="ROE18_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651865.1"
                     /translation="NYIDLNEEYIFTQEVDEDNKKSRITTSFLKFSRYSDFGKNLIQE
                     AEKIINKRKKISWGVIGPWFLADHVKKCGLENFVWDYKRTCQIPWCNVKIFLDNTSID
                     ISQPFLHLFSEMWRLNNMEKNTFHQMGVYGQLLKKHEIEKLYNQINTCLKTSMLDNIA
                     SFLTKFFIKKL"
     gene            complement(511..1173)
                     /locus_tag="ROE18_001711"
     CDS             complement(511..1173)
                     /locus_tag="ROE18_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase family
                     protein"
                     /protein_id="HDX3651866.1"
                     /translation="MTLAIIPARAGSKGIKNKNLALLHDRPLLYYTINAAKNSKYVDK
                     IVLSSDGDDILEYGQTQGVDVLKRPKELALDDTTSDKVVLHTLSFYKDYENIVLLQPT
                     SPLRTNVHIDEAFLKFKNENSNALISVVECDNKILKAFIDDNGNLKGICDNKYPFMPR
                     QKLPKTYMSNGAIYIVKSNLFLNNPTFLQEKTSCYIMDEKASLDIDTTEDLKRVNNIS
                     FL"
     gene            complement(1204..2067)
                     /locus_tag="ROE18_001712"
                     /pseudo
     CDS             complement(1204..2067)
                     /locus_tag="ROE18_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852888.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,4-N-acetylgalactosaminyltransferase"
BASE COUNT          716 a          292 c          244 g          815 t
ORIGIN      
        1 aattatattg atttaaatga agaatatatc tttacacaag aagtggatga agataataaa
       61 aaatcaagaa tcacaacatc ctttttaaaa ttttctcgat attcagattt tggaaaaaat
      121 cttatacaag aagcagaaaa aatcattaat aaaagaaaaa aaatctcgtg gggtgttata
      181 ggaccttggt ttttagctga tcatgtaaaa aaatgtggtt tagaaaattt tgtttgggat
      241 tataaaagaa cttgtcagat tccatggtgt aatgtaaaaa tttttttaga taatacttca
      301 atagatatca gtcaaccttt cttacattta ttttcagaaa tgtggagatt aaataatatg
      361 gagaaaaata cttttcatca aatgggagtt tatggacaac ttttaaaaaa acatgagata
      421 gaaaaattat ataatcagat aaatacttgt ttaaaaacat caatgctaga taatatagca
      481 tcctttttaa ccaagttttt tataaaaaaa ttataagaag cttatattat taactctttt
      541 taaatcctct gttgtatcta tatccaaact agctttttcg tccattatat agcaacttgt
      601 tttttcttgt agaaaagttg ggttatttaa aaataaattt gactttacta tataaattgc
      661 accattactc atataagttt ttggtaattt ttgtctaggc ataaatggat atttgttatc
      721 acaaattcct tttaagttac cattatcatc tataaaagct tttaaaattt tattatcaca
      781 ttctacaaca cttattaatg catttgagtt ttcattttta aattttaaaa aagcttcatc
      841 tatatgtaca tttgtcctta aaggagaagt gggttgtaat aaaacaatat tttcataatc
      901 tttataaaaa ctcaaggtat gcaatacaac cttatcacta gttgtatcat ctagcgctaa
      961 ttctttaggt ctttttaaca catctacacc ttgagtttgt ccatattcta atatatcatc
     1021 gccatcacta cttaaaacaa ttttatctac atactttgaa ttttttgctg cattgatagt
     1081 ataatacaac aaaggcctat catgcaaaag agctaaattt ttatttttta taccttttga
     1141 accagctcga gcaggtatta tagctaaagt cattttttta ccactcaatt taaatttatc
     1201 taatatttca cgaattactt tttcatcaag cattgtataa tttattttct ttatttttct
     1261 atgtctataa tggatttttt taaaatcttc taaagttaaa gcatccaaat gtttttgata
     1321 atcatttcta tgatatttta aagcaggaaa atgccattga agtaattctg cttgtaagat
     1381 ttttatatgt ttgggtataa tttgctgttc agaatacaat tctttcacag ttttttcagg
     1441 atcaatccac tgactttgct ttgaaaccat tctttctata aatacactat tgcacttttg
     1501 aattaacaat tgatcccctc catcgataaa accacattct cctatatttt gaattacaat
     1561 tttatctagt attaaaaaat taattcttgg aaatctaaca gcagtatttt ttgatgccat
     1621 ataaaaactc ttatataatt tttttgcatc atagtaatga tccacatcta tttttataag
     1681 ccactcatct tgcggtataa aactagctac atagttataa taactatgaa gtttattttc
     1741 ttcgctttgc ggattttcaa tttgcacctc atggggatat tttactggta taaacgaagg
     1801 gtattgtttg caaaattcca aaataatttc ttcacttcca tcagtacaat cattatatcc
     1861 tataacacct ctttgtatgg caggtaacat actttcaagt gatactctta aagtagtggc
     1921 ttcatttttt actcttataa aagcccatgg atttaaagga gattttgtat cttttgagtt
     1981 tggatcaaaa tcaaaaaaac ctttatgctt ttcattgtag atttttttat ttaagtttaa
     2041 aaaatattca ttatcaaatt ttaattt
//
LOCUS       DAPOLW010000181         2015 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.181, whole genome shotgun sequence.
ACCESSION   DAPOLW010000181 DAPOLW010000000
VERSION     DAPOLW010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2015)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2015)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2015
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.181"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            105..596
                     /gene="fldA"
                     /locus_tag="ROE18_001713"
     CDS             105..596
                     /gene="fldA"
                     /locus_tag="ROE18_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HDX3651867.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIASKLGISDVFNISDIDAAKMNSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWVEQIKP
                     YFA"
     gene            complement(641..1171)
                     /locus_tag="ROE18_001714"
     CDS             complement(641..1171)
                     /locus_tag="ROE18_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDX3651868.1"
                     /translation="MSKFALILSFFIALFMSACTNATFTQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLQTTLDRDLALKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLENKIINQIVSFFYF"
     gene            complement(1177..1887)
                     /locus_tag="ROE18_001715"
     CDS             complement(1177..1887)
                     /locus_tag="ROE18_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDX3651869.1"
                     /translation="MKKLSLILVCSASLFAASNSEISDFYSKSIKAQFPNATVSVSNR
                     QKVGNTGFESVIVSVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEA
                     RENFTKNAKAVAQKETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDDELKNYQVNY
                     ILTPVHGKSAFEKSALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDAELKEVFS
                     LYEKYRSLGLSATPTIIK"
BASE COUNT          655 a          256 c          326 g          778 t
ORIGIN      
        1 ttcacacatt ttattgaaat aaaacatttt ttgtgtgatt taaacaaaac tatgttaaaa
       61 ttagttccgt ataaaatatc aaatcaaatt ataaggagaa aataatgtca gtagcagtaa
      121 tctatggtag tgctatggga aatacagaag gagcggctaa tacaattgct tcaaaacttg
      181 gaattagtga tgtttttaat atctcagata ttgatgcagc taaaatgaat tcttacgata
      241 aattaatttg tggaacttca acttggggaa gtggtgattt acaagatgat tgggatggtt
      301 ttgatttttc agggcttagt cttggtggaa aaactgtagc tgtatttggt atgggtgata
      361 gtgaaagtta ttctgacact ttttgtggcg gcatgggtaa attagctcaa aatttaaaag
      421 atgcaggtgc aaatttggta ggagaagttt caactgatgg ttatacattt gaagcaagcg
      481 atgcggttgt agatggtaaa tttgttggac ttgctcttga caatgataat caagaagatc
      541 aaactgaatc aagaattgat gcttgggtag aacaaatcaa accttatttt gcttaataat
      601 tcttaaaatc aagagttttt atactcttga ttgtcttttc ttaaaaataa aaaaaactca
      661 ctatttgatt tataatttta ttttctaaag ataattgaca gcgttcttta tttccaagat
      721 aagctgttct tgcaagaaga cttgtttttt gagaattgtg atttttagag ttgatttgta
      781 aattaacttg catagtatag tagttttcta ccatccattc tccatcgctt tccaaaggat
      841 caaaatcata aaaaaatctt gctgaagttg tgattttttg agcataagaa tgctttttca
      901 tatctacaag attgattaaa atttcataat ctgcattctc ttttacttct tttaagccta
      961 aatttttaag ttttaaagcc aaatctctat ctagagtagt ttgaagttga ctaggatttt
     1021 gaaaggaaat tttaaaactt tgttgttttt gtgatctgat aaaaatgcct tcattgcttg
     1081 tttgaataaa gctttgtgtg aaagttgcat tggtgcaagc actcataaag agtgctataa
     1141 aaaagcttaa aattaaagca aatttagaca ttaggtttat ttaataatag ttggagtagc
     1201 gctaagacct aatgagcgat atttttcata taaggaaaaa acttctttta attctgcatc
     1261 acttactttt ggataatttt tgatatttgc atcatagtat ttgtttaaaa ttgcgatttt
     1321 ttctttatca ttttttgctt tttttgcttc cttgtagatt agagcggatt tttcaaaagc
     1381 agattttcca tgtactggag ttaaaatata attaacttga tagtttttaa gttcatcatc
     1441 aatttgagct aaatgttctc tacaataagg gcattcagga tctgaaaaaa cataaattgc
     1501 aggtttattt ttatctccca aagctattac catggtttct ttttgtgcta cagctttagc
     1561 attttttgta aaattttctc ttgcttcttg aaattttttc atttcatatt cttgagcata
     1621 agaaattccc gttttcaagt cgataagatc aggggtaata agactatctt ttgtaaaaag
     1681 aatgttttct tgtttttgtc catttaattc aacgcttaca ataacacttt caaaacccgt
     1741 attaccaacc ttttgacgat ttgatacact aacggtagca tttggaaatt gtgctttaat
     1801 gctttttgaa taaaaatcac taatttctga attacttgca gcaaacaaag atgctgaaca
     1861 gacaagaatt aaacttaatt ttttcatagt ttataaatcc tttaaataaa ttatgtttaa
     1921 ttctataatg attttctaaa tgtttgttaa aaatcttttt tcagcttctt tacttacttg
     1981 aggaaatttg tctaagtatt ctaaataagc aatag
//
LOCUS       DAPOLW010000182         1989 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.182, whole genome shotgun sequence.
ACCESSION   DAPOLW010000182 DAPOLW010000000
VERSION     DAPOLW010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1989)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1989)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1989
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.182"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(29..1960)
                     /locus_tag="ROE18_001716"
     CDS             complement(29..1960)
                     /locus_tag="ROE18_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HDX3651870.1"
                     /translation="MALIDLIEASKKFGDKIVLNEVNFSANEGEKIAIIGKNGEGKST
                     FLKTLLGTLPLDSGRIIRQNGKSIAMLSQTVDFNANLSVKEAIKQELVEIYNTLEEYE
                     ILHKKLEEDPSNKDYLQKIDTLMTLIDSKDAWSIESKIIRVLKEFSLLEYENRIISTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVEQGKLSIFKGGYANYLEKKTQILQSLAKSHETLLKQLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGAIKRLKLEISRAALNFNGEKTINRKKMLFEL
                     KNISKNINNKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDSGEIKRGE
                     LKIGYFDQARSLVNSDKSLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     ALLSGGEKNRVALALLFAKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYAFEGNGYINILHTLYTEYLENEKEIEELDNFALELQTQEQNNNQKE
                     KSSKKLSYKENEILKNHPEKIDFLEQKIAKLNQDLSDPNVYQEIGINKLYQELEVMQK
                     ELEILENEYFLVLEKSENL"
BASE COUNT          601 a          361 c          233 g          794 t
ORIGIN      
        1 agtaaaaaaa aatataaaat ctctttaatt ataaattctc gcttttctct aatactaaaa
       61 aatactcatt ttctagaatt tcaagttctt tttgcattac ttcaagctct tgataaagct
      121 tgttaatacc tatttcttga tatacatttg gatcggataa atcttgattt aatttagcta
      181 tcttttgctc taaaaaatct attttttcag gatggttttt taatatctca ttttctttgt
      241 agctcaattt tttggagctt ttttcttttt ggttattatt ttgctcttgg gtttgaagct
      301 ctaaagcaaa attatccaat tcttcaattt ctttttcatt ttcaagatat tcagtataaa
      361 gagtgtgtaa aatatttata tatccatttc cctcaaaagc ataaagtttt gttgcgattt
      421 tatcaacaaa atatctatcg tgtgatacta gcaaaatagc cccttcaaaa ctaagtaagt
      481 attcttctaa tatattaatc gtagctatat caagatcatt agttggctca tctaaaatca
      541 aaacatcata ttctttagca aaaagcaagg ctaaagcaac gcgatttttc tctccgccgc
      601 ttaaaagagc cacgctttta tctaaaaatt ccttaggaaa tagaaaattt ttcaaatatc
      661 cataaacatg catattttta ccacgaactt caaccctatc tccaccattg ggacaaaaaa
      721 tttcaagcaa gcttttatca gaatttacca agcttctagc ctgatcaaaa tatcctatct
      781 taagctctcc gcgttttatt tcaccactat cttgttttat ttgccctaga agaattttta
      841 acaatgttga ttttccacaa ccatttcttc ctacgatagc tatgcgttca ccttgtaaaa
      901 tacgcgttga aaaatcttta aaaagatttt tattgtttat atttttgctt atatttttaa
      961 gctcaaaaag cattttttta cgattgatcg ttttttctcc attaaaattt aaagccgctc
     1021 ttgaaatttc aagttttaag cgtttgattg ccccaggatt ttttttcgct tcttcacgca
     1081 ttttaaaaat gcgttctttt cgtccttcat ttcttttaag tcttgcttta acccctcttc
     1141 taagccattc ttcttcgctt tttaattgct ttaaaagagt ttcatggctc ttagcaaggc
     1201 tttgcaaaat ttgtgttttt ttctctaaat agtttgcata tccgccttta aaaatactaa
     1261 gcttaccctg ctctacttct acacacttgt gtgctatagc gtcaataaaa tatctatcat
     1321 gggaaataaa aatcacacac atctttgaat tttttagcaa ttcttccaaa aagcttgtca
     1381 tatatacatc taaatgatta gttggttcat caagcaataa aatatcagga ttttttagta
     1441 aaagtatgca aagcccaacg cggcgtattt ctccaccact taaagtagat ataatgcgat
     1501 tttcatactc aagtaaacta aattctttta aaacgcgtat tattttagat tctatactcc
     1561 aagcatcttt actatcaatc aaagtcataa gcgtatctat tttttgaaga taatctttat
     1621 tactaggatc ttcttctaat tttttatgca gtatttcata ttcttctaag gtattgtaaa
     1681 tttctacaag ctcttgcttg atggcttctt ttacgcttaa atttgcatta aaatcaacgg
     1741 tttgtgaaag catggctatg ctttttccat tttgtcttat tattctaccg ctatctaaag
     1801 gaagtgtgcc taaaagcgtt tttaaaaaag tagattttcc ttctccattt ttgcctataa
     1861 tagcaatctt ttctccctcg tttgcgctaa aatttacttc atttaaaact attttgtctc
     1921 caaatttttt tgaagcttca attaaatcta taagagccat tttttatcct tgactgagtt
     1981 taaagctaa
//
LOCUS       DAPOLW010000183         1981 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.183, whole genome shotgun sequence.
ACCESSION   DAPOLW010000183 DAPOLW010000000
VERSION     DAPOLW010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1981)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1981)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1981
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.183"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..335
                     /locus_tag="ROE18_001717"
     CDS             <1..335
                     /locus_tag="ROE18_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDX3651871.1"
                     /translation="LYPNPKYIVYHSIFDERSPFKNKENFVHILKELNFKVEFFAISQ
                     VDNKFIKNLNHGMGLSTKLFFKKHLLQILKEPLQDKICKKEVSYKCDELVYTFKEENH
                     QIILNITN"
     gene            425..1741
                     /locus_tag="ROE18_001718"
     CDS             425..1741
                     /locus_tag="ROE18_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HDX3651872.1"
                     /translation="MAKKQLSLTRLSFPIFWDLLSKYLTVIINTAMVSHYSNFLVGAM
                     GAGNQILDLFITIFSFLSVGCSVLIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVL
                     ILWHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYCVMFI
                     GFLMDIVVICGNYYVLHYTKSELFGIGLSNIFARIVAIVALFAILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQAISIANEIIVGKLVGARYENIAYKHAWRALYFSVIASALVAFLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
     gene            1717..>1981
                     /locus_tag="ROE18_001719"
     CDS             1717..>1981
                     /locus_tag="ROE18_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDX3651873.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKCIKTLRLRLNEKGEFVLSIPY
                     FCTFKSVYEFLDKSSSWMNEAKKRFEKKALKDDELIFLAKKYQI"
BASE COUNT          660 a          208 c          352 g          761 t
ORIGIN      
        1 gcttataccc aaatccaaaa tatattgtat atcatagtat ttttgatgaa agatctcctt
       61 ttaaaaataa ggaaaatttt gtacatattt taaaagaatt aaattttaaa gtagaatttt
      121 ttgctatttc acaagttgat aataagttta ttaaaaattt aaatcatgga atgggattga
      181 gcacaaaatt attttttaaa aaacatttat tgcaaatatt aaaagaacct ttgcaagata
      241 aaatttgcaa gaaggaagtc tcatataaat gtgatgagct agtgtatact ttcaaagaag
      301 aaaatcatca aattatttta aatataacaa attgagtata ttaaatattt atatttaaaa
      361 aagtaatttt taagtagaat tgttttttaa aagaaatatt taaaaaaaga gataagataa
      421 tatcatggca aaaaaacaac tctccttaac aagacttagt tttcctatat tttgggattt
      481 gctttctaag tatttaactg tgattatcaa taccgctatg gtgtcgcatt attctaattt
      541 tcttgttggt gctatgggcg ctggaaatca aattttagat ctttttatca ctattttttc
      601 atttttaagt gtgggttgta gtgtgctgat cgcacaagca attggtgcaa aagatcatgt
      661 tttagcaaga aaagtgattc atcaaagttt gttcttaaat gcacttttag gctttgtatg
      721 cggtgtgctt attttatggc atggggagta tttgctttat cttttaaaaa ttccacaaga
      781 attgctcaaa gatagcgaaa tttacttaca tatgcttgca atttgtttgt tttttgatgc
      841 cataggtatt gttttagctg ctattgtaag ggtttataat atggcttatt gtgtcatgtt
      901 tataggtttt ttgatggata tagtggtgat ttgtggaaat tattatgttt tgcattatac
      961 aaagtcagaa ctttttggaa tagggcttag taatattttt gctcgcattg ttgctatagt
     1021 tgctttgttt gcgatacttt tttataaact taaaattcat cttaaaatca aagaaatgat
     1081 aaaacttgaa aaagaagttt taaaaaaggt tttaaatata ggaggatttt cagcagggga
     1141 aaatcttttg tggatagtcc aatatactat agcttttgct tttgtagcaa gcttaggtga
     1201 ggcgagtttg agtgtgcaaa cgatttattt tcaaatttca atgcttatca tgcttatagg
     1261 acaagctata agcatagcta atgaaattat agtaggtaaa ttagtcggtg ctagatatga
     1321 aaatatagct tacaaacatg cttggcgtgc tttatatttt agtgtaatag cgagtgcttt
     1381 agtggcgttt ttaaactatc tttgtcaaga ttttactatg caaattttag ggcttaaaga
     1441 agagctaaaa aatttaatga tacctttatt tgctctttca atctttcttg aaatttcacg
     1501 aacttttaat atagttatgg ttaattcctt gcgcgcaagt ggcgatgcta agtttccatt
     1561 ttttagcgga cttgttttta tgatgggggt atctttgcct gtgggttatg tgctttgttt
     1621 tcattttaat cttggaattt taggggtttg gataggattt tgtgcagatg aatttttgcg
     1681 tggaatggta aattcataca gatggaaaag taaaaaatgg caaggcaaag ctctagttta
     1741 aaatcattta tttataaaga tgagtgctat ttttattcta aaaaatgcat aaaaacttta
     1801 agattaaggc taaatgaaaa gggtgaattt gttcttagta ttccttattt ttgcaccttt
     1861 aaaagtgttt atgagttttt agataaatca agttcttgga tgaatgaggc aaaaaaaaga
     1921 tttgaaaaaa aagccttaaa agatgatgag ttaatctttt tagctaaaaa atatcaaatt
     1981 a
//
LOCUS       DAPOLW010000184         1973 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.184, whole genome shotgun sequence.
ACCESSION   DAPOLW010000184 DAPOLW010000000
VERSION     DAPOLW010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1973)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1973)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1973
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.184"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..832)
                     /locus_tag="ROE18_001720"
     CDS             complement(<1..832)
                     /locus_tag="ROE18_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HDX3651874.1"
                     /translation="MNSIKYISRKKCVISNTELEFLSKDTFPLFCGCVETDLKDDLIC
                     EQEWAISKYGVIQLKNLIPLELLYKNGHNSGTIGELWEEHHKKFADFIVENNPKSILE
                     IGGGHGKLSQNCLNLLDLNWTIVEPNSKNKYENVDYIDGFFCKEIFNNKKFDTIVHSH
                     TFEHIYDPCKFLEEISFILANGDKMIFSLPNMQKWLRNKFPNCFNFEHTILLSECVLE
                     FLLHKYKFKILDKKYFKEHSIFYCICKDESINNEKATLKNQYEENKKLFLDMKEYYRE
                     K"
     gene            complement(825..1859)
                     /locus_tag="ROE18_001721"
     CDS             complement(825..1859)
                     /locus_tag="ROE18_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002891091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HDX3651875.1"
                     /translation="MTSELKRNITSFTGIVGSEKINDLCKIKNERKWNDYRERYEKLS
                     RLEIIQNFPIQIDFELNATCNLRCPMCPLSVELNSEKKQYKFPFELFCKIIDEGVKYG
                     LEAVRLNYLNEPLLRDDLEDFIFYAKNKGVQDIYFSTNGMLLNKERIKSLIAVGLDRI
                     QISIDANSEKLYKKIRPGGNYNQVLSNILTLVELKKEMKSLTPLVRVNFVRTEINEHE
                     LDNFIDFWKNKVDMIGVQEMVKPPKSTQELFSRTTERKKKFQCSQPYKLLVFTAEGKV
                     LPCCNFYGEEMPLGNIYDFLRENQIEDGNILKYFWSHAKIKQLRELHKKCDYAKNPIC
                     KKCIEGALYE"
BASE COUNT          676 a          324 c          181 g          792 t
ORIGIN      
        1 ttttttctcg ataatattct ttcatatcca aaaataattt tttattttct tcgtactgat
       61 ttttcaaagt tgctttctca ttattaatac tttcatcttt acaaatacaa taaaaaatac
      121 tatgttcctt aaaatatttt ttatcaagaa ttttaaattt gtatttatgc aacaaaaatt
      181 ctaaaacaca ttcacttaga agtatagtat gctcaaaatt aaaacaattg ggaaatttat
      241 ttctaagcca tttttgcata tttggtaaag aaaatatcat tttatcacca tttgctaaaa
      301 taaaagaaat ttcttctaaa aatttacatg gatcataaat atgttcaaag gtatgactat
      361 gaacaatagt atcaaatttt ttattattaa aaatttcctt acaaaaaaat ccatctatat
      421 agtcaacatt ttcatattta tttttagaat ttggttcaac tatagtccaa tttaaatcca
      481 ataaatttaa gcaattctgt gaaagctttc catgtcctcc gcctatttct aaaatacttt
      541 taggattatt ttctacaata aaatctgcga attttttatg atgttcttcc caaagttctc
      601 caatcgttcc agaattatgt ccatttttat acaataattc tagtggaata agatttttaa
      661 gttgaattac gccatatttt gaaatagccc attcttgttc acaaatcaaa tcatctttca
      721 aatcagtttc aacacagccg caaaataaag gaaatgtatc tttagataaa aactctaatt
      781 ctgtattgct aataacacat ttttttcgcg aaatatattt tatactattc atataatgca
      841 ccttctatgc attttttaca aataggattc ttggcataat cgcatttttt atgcaattct
      901 cttaattgtt ttattttagc atgactccaa aaatatttta agatattccc atcttctatc
      961 tgattttctc ttaaaaaatc ataaatattc cccaatggca tctcttcacc ataaaaatta
     1021 caacaaggga gaactttccc ttctgctgta aatactaata atttatatgg ctgagaacat
     1081 tgaaatttct tttttctttc agttgtccta ctaaataatt cttgtgtact ttttggcggc
     1141 ttaaccattt cttgaacacc tatcatatct actttatttt tccaaaaatc aataaaatta
     1201 tctaattcat gttcattaat ttctgtacga acaaagttta cccttactag aggagttaaa
     1261 cttttcatct ctttttttaa ctccactaaa gttaaaatat tagaaagaac ttgattataa
     1321 tttccaccag gtctaatttt tttgtaaagt ttttcagagt ttgcatcaat agaaatttga
     1381 attctatcta gacccactgc tataagagac tttattcttt ccttgttaag aagcatacca
     1441 tttgttgaaa aataaatatc ttgaacacct ttgttttttg cataaaaaat aaaatcctcc
     1501 aaatcatctc ttaaaagtgg ctcgtttaaa tagtttaatc ttacagcctc tagcccatat
     1561 tttactcctt cgtcaataat tttacaaaat aattcaaacg gaaatttata ttgctttttt
     1621 tcactattta actcgacaga taatggacac attggacatc taagattaca agtagcatta
     1681 agttcaaaat caatctgaat aggaaaattt tgaattatct ctaatctgga aagtttctca
     1741 tatctttctc tataatcgtt ccatttcctt tcatttttaa ttttacaaag atcatttatt
     1801 ttttcactcc caacaattcc tgtaaatgaa gttatatttc ttttcaattc gctagtcata
     1861 attatctccc tttgttaaga tatcatctta atttataaac attttaacaa attttacatt
     1921 aaaaaatcta ttattacaat ttcttatgct ttgtgaaaat ttaaaaaatt tct
//
LOCUS       DAPOLW010000185         1964 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.185, whole genome shotgun sequence.
ACCESSION   DAPOLW010000185 DAPOLW010000000
VERSION     DAPOLW010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1964
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.185"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            63..404
                     /locus_tag="ROE18_001722"
     CDS             63..404
                     /locus_tag="ROE18_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4878 domain-containing protein"
                     /protein_id="HDX3651876.1"
                     /translation="MAYGSSNPEDLAKNFTKDLYSGDTKSVMSYIDLSEAKSDEEKTF
                     VSDKITQVVAENAAKAKRMGGVKDIQIEEKTINKDSAKIRVLVLFNNDNNQSSNVFLA
                     KKDRKWLVLLK"
     gene            388..993
                     /locus_tag="ROE18_001723"
     CDS             388..993
                     /locus_tag="ROE18_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651877.1"
                     /translation="MFYLNKILYFFLILFLLIGILGFFINSNPSNQIIKKPYLPFLEI
                     GDLVFRAGIGSESFLIENLSQSPYSHIAMVVKTSPTILIHATTDDDKNAKNQVILSSM
                     DDFLKLSHKIAIKRLKFDEKTKQKIVAKDLEHLGRKFIISTDKDAFYCTTFLEQSINS
                     ITPFHLQYTLIKAPFNEGLYLFPQTFFENNQSVLIYESQNF"
     gene            1057..1404
                     /locus_tag="ROE18_001724"
     CDS             1057..1404
                     /locus_tag="ROE18_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651878.1"
                     /translation="MKKSILFASALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLQVGNFLESKISYGTPATPNTQAIPV
                     ARKIEIQCYKKAY"
     gene            1539..>1964
                     /locus_tag="ROE18_001725"
     CDS             1539..>1964
                     /locus_tag="ROE18_001725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651879.1"
                     /translation="MKKWIFIVFCFILGFIIHIFYIGYTNELLFNKFIKNSNPDYTIT
                     DIYFKKGFLTSKGSFTLNHSHTQLSTKINLKFNNYFFLNKIIKGNFTNPFDFLDEVLK
                     NNKLGTFTLKLHDNNSKIFLNIKDINLSNEGGDTIINGGY"
BASE COUNT          757 a          267 c          241 g          699 t
ORIGIN      
        1 tatcaaaaga aaaaaatgaa attttttaaa ctttctttct tggctttagt tgcctttttt
       61 tagtggctta cggttcttca aatcctgaag atttagctaa aaattttaca aaagatcttt
      121 acagtggtga tactaaatct gttatgagtt acattgatct tagcgaagct aaaagcgatg
      181 aagaaaaaac atttgttagt gataaaatca ctcaagttgt tgctgaaaat gcagccaaag
      241 caaaaagaat gggtggtgtt aaagatattc aaattgaaga aaaaacaatc aataaagatt
      301 ctgctaaaat cagagtttta gtgttattta acaatgataa taatcaaagc agcaatgttt
      361 ttcttgctaa aaaagataga aaatggcttg ttttacttaa ataaaatttt atattttttc
      421 ttaattttat ttttattgat tggaattttg ggtttcttta taaattccaa tccttcaaat
      481 caaatcatca aaaaacccta tctacctttt cttgaaatag gtgatcttgt ctttcgtgca
      541 ggaataggaa gtgaaagttt tttaatagaa aatttaagtc aaagccctta ttctcatatc
      601 gctatggtag ttaaaacttc tccaactata ctcatacatg ctacaacaga tgatgacaaa
      661 aatgctaaaa accaagttat cttaagctct atggatgatt ttttaaaact gagtcataaa
      721 attgctatta aaagattaaa atttgatgaa aaaaccaaac aaaaaatagt tgctaaagat
      781 ttggaacatt taggcagaaa atttatcata agtacagata aagatgcttt ttactgcact
      841 acttttttag aacaatctat taactccatt accccatttc atcttcaata tactctaatc
      901 aaagctcctt ttaatgaagg tttatatctt tttccacaaa ctttttttga aaataatcaa
      961 agcgtattaa tttatgaaag tcaaaatttt taatttcaca ttcacttcac ttaaaaattt
     1021 tataatgtca tcactttaca ttaaggagaa ataattatga aaaaaagtat tttattcgca
     1081 tcagcacttt tagctagctc aatgcttttt gcagatagtc taaaacttga aggtactatt
     1141 gcacaaattt atgataacaa caaaaccttg cttattgact ctatttatgg cggacaaatg
     1201 gctataaaag ttctaccaaa taccgaaata gaaatggatg attgtggtat ttttggaaca
     1261 gataaagatg gaacttttaa agatttacag gttggaaatt ttttagaaag taaaatttct
     1321 tatggaacac ctgctacacc aaatactcag gctattccag tagctagaaa aattgaaatt
     1381 caatgttata aaaaagctta ttaatataaa tcccttaaca agggatttat aaaaatcatt
     1441 cttcggcaaa ctacttcatt actcttaaat aaaaatttaa actctttttt aacaagcaat
     1501 ttataaaata acacttatat tttcatctaa ggcaaataat gaaaaaatgg atttttattg
     1561 ttttttgttt tatattaggt tttattattc atatatttta tataggatac actaacgaac
     1621 ttttatttaa taaatttatt aaaaatagca atcctgatta tacaattaca gatatttact
     1681 tcaaaaaagg ttttttaacc tctaaaggaa gttttacttt aaatcactct catacacagc
     1741 tttcaaccaa aatcaacctt aaatttaata attatttttt cttaaataaa attataaaag
     1801 gaaattttac aaatcctttt gattttttag atgaagtgtt aaaaaacaat aaattaggaa
     1861 cttttactct caaattacac gataataact ctaaaatatt tctaaatatt aaagatataa
     1921 atttaagcaa tgaaggcgga gataccatca taaacggcgg atat
//
LOCUS       DAPOLW010000186         1875 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.186, whole genome shotgun sequence.
ACCESSION   DAPOLW010000186 DAPOLW010000000
VERSION     DAPOLW010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1875
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.186"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(110..280)
                     /gene="kdpF"
                     /locus_tag="ROE18_001726"
     CDS             complement(110..280)
                     /gene="kdpF"
                     /locus_tag="ROE18_001726"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
                     /protein_id="HDX3651880.1"
                     /translation="MLWILSLLLLLAFGSLCFFIRFCEIQTKDTRMIFLLVLSLILAL
                     YLFYALLYPEKF"
     gene            complement(435..1859)
                     /locus_tag="ROE18_001727"
     CDS             complement(435..1859)
                     /locus_tag="ROE18_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDX3651881.1"
                     /translation="MDFLTSLSEAGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCIGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIALVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIIIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKAALGDIVKEHPWTYAVMLLLISKFVNSQAAAISA
                     FVPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMAAGYL"
BASE COUNT          727 a          345 c          255 g          548 t
ORIGIN      
        1 caaaaatagt ttttttacag cttgcaattt tataaagata atttccaaaa attaaagcca
       61 atataaaagc tataatcagt gttattaaaa tttctagcat atttttcctt taaaattttt
      121 caggatataa tagagcataa aataaataaa gagcaagtat taagcttaaa actagtaaaa
      181 atatcatccg cgtgtcctta gtttgaattt cacaaaaacg gataaaaaaa cataaactac
      241 caaaagctaa aagtagaagc aaagataata tccataggat agccttttct cattgattca
      301 aaataggatt tattctatcc ttgttaagct tatattttga ttaatactaa ttttatgatt
      361 tatttataat ttttatctat attaaataaa aagacaaatg aagaatttag caggaaaaat
      421 cctgctaaaa attgttaaag ataacctgct gccatagcaa taaaatatcc tgctatacaa
      481 gaagtgatta cacctataag acctggtaaa ataaaactat gattgataac aaatttaccg
      541 atgtgagtag tacctgatct atcaaattgt atagtagcca aatcgcttgg ataagttggt
      601 aaaatataat acccataaca agcagccgca aaagcaacaa ttacaccagg ttcaacacca
      661 attcctaaag ccaaaggaac aaaagctgaa atagccgctg cttgagagtt tacaaatttt
      721 gaaattaaaa gaagcattac agcataagtc caaggatgct cttttactat atctccaagc
      781 gctgctttca tcataggagt gtgaactgca aacatagtat cagccatcca agaaattcca
      841 aaaaccgcaa caagtgctat catacctgat ttaaaaattt cattagagcc gattttcttt
      901 gcatctgttt tagtaaagat gataatcaaa gaacctgcta aaagcataaa catctgaata
      961 actgaaacca tggataaaac atccatttta ggattgccta aagcatctac ttgaggaatg
     1021 ccatttttta caacttgccc ccagtttgga cgcaagaaat caaatacacc taataaagct
     1081 actaaagcaa tagctcctaa gaaaatccac attgcaaccc aattgctttt tggaagttta
     1141 acacctaaaa gtgttttaga atccccataa acatattttt taaattcagg atctttaagt
     1201 ttttcttgaa atacttcatc tttatccaaa tcttttcctc taaaccaaga aaaaattcct
     1261 atacacaata caccaaataa tgtactaggt atagtaattt gaagaagatt aatataacca
     1321 tcaaaacctg ctaatttatg attagcattt aaaagcaaag cagtcaaact cacaacagcc
     1381 acagatacag gagatgcaat aatacccatt tgtgatgata tagaagctgc cgccattgga
     1441 cgctcaggac gaataccgtt tttaatcgct atatcataaa taataggcat aatagtataa
     1501 accacatgtc ctgttccaca aagtatagtc aaaaagcagg ttacaaaagg tgctaatatt
     1561 gtcaaaaact taggattgcg tcttaaaatt ctttctgcta tttgaagcat aacatccaaa
     1621 ccaccacttg cttgcaaagt tgcactcgca accactaccg ctaaaatcgt aagcataaca
     1681 tctatggctg gttttccagg ctttatatga aaagcaaata caagcattaa aatacctata
     1741 ccaccaagta aaccaagcgc tatgccgcct ttttttgcac cgtaaaaaag acaaattaaa
     1801 acgataatga tttggattgc aaattgccct gcctcactaa ggcttgttaa aaagtccatt
     1861 ttaactcctt tgaaa
//
LOCUS       DAPOLW010000187         1851 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.187, whole genome shotgun sequence.
ACCESSION   DAPOLW010000187 DAPOLW010000000
VERSION     DAPOLW010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1851
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.187"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..906)
                     /locus_tag="ROE18_001728"
     CDS             complement(<1..906)
                     /locus_tag="ROE18_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HDX3651882.1"
                     /translation="MTPTELNLKAKALLETHFDDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPAVGDFLELCGSVSLYPESGRYQFIATSMKKAGFGDLE
                     AQFLALKERLQKEGLFDPRFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NYKIQNYENLLLNLSKFFKFNSLPKI"
     gene            complement(903..1610)
                     /gene="ubiE"
                     /locus_tag="ROE18_001729"
     CDS             complement(903..1610)
                     /gene="ubiE"
                     /locus_tag="ROE18_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HDX3651883.1"
                     /translation="MQKQEKIIEMFNQIAPTYDKANRILSFGADVAWRKKACQRVMSL
                     YLKKDLKIADIACGTGDMIEIWQESALKMEKNILNIKGIDPSSGMLNVAKEKFPNVEF
                     IKAGAQNLPLESQSLDILSISYGIRNVVERQKALSEFARVLQKDGILVVLEFTKREKG
                     GFIAACRDFYLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKKEFILELKNAGFEMLD
                     YKSFSFGVSSMFIAKKL"
     gene            complement(1613..>1851)
                     /locus_tag="ROE18_001730"
     CDS             complement(1613..>1851)
                     /locus_tag="ROE18_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651884.1"
                     /translation="RKNILKNFDLELFENSFFELAIFLEYFYHFLEIKNLNKLYEKYS
                     KDRDKNIFSKIINNKNKFCKLLKKSSKNLKIYKG"
BASE COUNT          628 a          334 c          191 g          698 t
ORIGIN      
        1 tatttttggc aaagaattaa atttgaaaaa tttgcttaaa tttaaaagca aattttcata
       61 attttgtatt ttataattcc aaagttgcat taatttttct tccattaaat ccaaactttg
      121 ctctatatcc aacttagaat aaaacaaagt atctatagca gctgaaggcg ttggagctct
      181 aaaatctgca acaaaatcac taataacata atcaatctca tgtcctatgg ctgaaataat
      241 aggagttttt gctttaaaaa tctctcttgc taaattttca tcattaaaac aaaaaagatc
      301 ttccctgctt cctccaccac gtgctataat aagaacatct aaatccatat catcggcttt
      361 ttttaaagct tgtataagag aaaaaggagc attatttcct tgagttaaag catcaaaaat
      421 ataaattttt gccaaaaaat attctttttg atgaataagt tttaacatat cttgcaaagc
      481 agcagaagtt tttgaagtta taatacctac ttttttagga aattttggca aagatttttt
      541 aaagcgtgga tcaaaaagtc cttctttttg caaacgctct tttaaagcca aaaactgtgc
      601 ttccaaatcc ccaaaacctg cttttttcat actagtagcg ataaattgat aacgaccgct
      661 ttcaggatat aaactcacac ttccacaaag ctctaaaaaa tcccccaccg ctggtttaaa
      721 cccgactttt aaattagctc ctttaaacat agcacaagca atgcttgatc tttcatcttt
      781 taaatcaaaa taccaatgcc ctgaaccatg caaagtaatt tttgaaattt ctccacttaa
      841 aactatatca tcaaaatgtg tttctaataa agcctttgct ttaagattta attctgttgg
      901 tgtcatagtt tttttgctat aaacattgaa ctcacgccaa agctaaaact tttataatca
      961 agcatttcaa aaccagcatt tttaagttct aagatgaatt ctttcttact taaaaatcct
     1021 tcaatagagt ttggcaaata ctcataagca cttttatttt tactgattat cccacctata
     1081 cttggtaaaa tatttttaag ataaaaatct ctacaagctg ctataaatcc acccttttct
     1141 ctttttgtaa attccaaaac taccaaaata ccatcttttt gaagcactct agcaaattcg
     1201 cttaaggctt tttgtctttc tacaacattg cgaatgccat aactaatact taaaatatct
     1261 aaactttgac tttctaaagg taaattttgc gcccctgctt ttataaattc gacatttgga
     1321 aatttttctt ttgcaacatt tagcatgcca ctacttggat caataccttt aatatttaaa
     1381 atattttttt ccatttttaa agcactctct tgccaaatct ctatcatatc ccctgtgcca
     1441 caggcaatat cagcgatttt taaatctttt tttaaataca aactcatcac tctttgacaa
     1501 gcttttttgc gccacgctac atcagctcca aagcttaaaa ttctattcgc cttatcataa
     1561 gtaggtgcaa tttgattaaa catttctata attttttctt gtttttgcat ttttatcctt
     1621 tgtaaatttt caaattttta cttgattttt taagcaattt gcaaaattta tttttattat
     1681 tgattatttt ggaaaaaata tttttatccc tatctttgga atatttttca taaagtttgt
     1741 ttaaattttt tatctctaaa aaatgataaa aatattctaa aaatattgcc aattcaaaaa
     1801 aactattttc aaaaagctct aaatcaaaat tttttagtat attttttcta a
//
LOCUS       DAPOLW010000188         1838 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.188, whole genome shotgun sequence.
ACCESSION   DAPOLW010000188 DAPOLW010000000
VERSION     DAPOLW010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.188"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            82..801
                     /locus_tag="ROE18_001731"
     CDS             82..801
                     /locus_tag="ROE18_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002833638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDX3651885.1"
                     /translation="MLLDDYLKIKSYFALDETSSYALTLLAKNNRKRFSINRKIQHFK
                     ALSTLKYLLETGIIKLEYSKEAKKIKDKRQKIKKELRSYVVQDKIIFSNQFTRFFFYF
                     LKPNEKLILQNRYKEVLEYIKEKFELYQSFCFEQLSRELLEKKFNINGVQSYWDKNLE
                     LDLYYRDKNLCFVGEVKFKNKKICKNILNLLKSKAKSLNLAPNYYIIISKNGFSKEFD
                     KICEQNLLLLDLNDFKILLEE"
     gene            805..1824
                     /gene="flgS"
                     /locus_tag="ROE18_001732"
     CDS             805..1824
                     /gene="flgS"
                     /locus_tag="ROE18_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HDX3651886.1"
                     /translation="MNESILKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLSIISLDKIRDELEFEGRFY
                     AVKIIAHNEKTIVSATDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFAR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNF
                     TSQIDFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASYDNEKI
                     CIRVYDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYF
                     TLPLA"
BASE COUNT          699 a          209 c          302 g          628 t
ORIGIN      
        1 gatttttata gtgtatttga aggttttgaa aaattaaaca ttttaaattt tgaagacgat
       61 gtatttacaa atatagagcg aatgttgctt gatgattatc taaaaattaa aagttatttc
      121 gccttggatg aaacaagttc ttatgctctt actttgctag ctaaaaacaa tcgtaagcgt
      181 ttttctatca atagaaaaat tcagcatttt aaagctttat ctacacttaa atatctttta
      241 gaaacaggta taataaaact tgagtatagt aaggaagcta aaaaaataaa agataaaaga
      301 caaaaaatca aaaaagaact aagatcttat gttgtccaag ataagattat atttagcaac
      361 caatttactc gtttcttttt ttatttttta aagcccaatg aaaagcttat tttgcaaaat
      421 cgttataaag aagttttaga atacattaaa gaaaaatttg aactttatca aagtttttgt
      481 tttgaacagc tttctagaga attgcttgag aaaaaattca atatcaatgg agtgcaaagt
      541 tactgggata agaatttaga acttgatctt tattatcgag ataaaaattt gtgttttgtc
      601 ggagaagtta aatttaaaaa taaaaaaatt tgtaaaaata ttttaaatct tttaaaatca
      661 aaagcaaagt ctttaaattt ggctccaaat tattacatta taatctcaaa aaatggtttt
      721 agcaaggaat ttgataaaat atgcgaacag aatttgcttt tacttgattt gaatgatttt
      781 aagattttat tagaggaatg ataaatgaat gaaagtattt taaaaagttt agactcaaat
      841 gaaaaagaaa ccctacaaaa aggcttagaa agtcttatag aacaaactta tgtaatagaa
      901 aatgaataca aaactttaaa tgaaaactat aactccttac gcgcaatggt tgatgagatt
      961 atagaggtgt tgcctagtgc gctttggatt ttagataaag aaaaaaatat tattttacaa
     1021 aatcaagaag ccttgaaaaa tccaaaatta cttagtatca ttagtcttga taaaattcgt
     1081 gatgagcttg aatttgaagg taggttttat gcggtaaaaa tcatagcgca taatgaaaaa
     1141 actatagttt cagctacaga tattagcgat gaaaaacgca atgaaaggct tgcaagcatg
     1201 ggtagtgtag cggctcattt ggcacatgag ataagaaatc ctattggatc tatatcttta
     1261 cttgcttcaa ccctttttgc tcgtagtgag cttaaaaata agcatatagt tcttgagatc
     1321 caaaaggcta ttgctagagt ggagcgtatc gtaaattcaa ctttactttt tactaagggt
     1381 gtacacatca atgctttaaa ttttaatctt ttagagttaa aagaagagtg tgaaagtgcc
     1441 attaactctt ataatttcac ttctcaaata gactttgaaa tatctttttt ggataagcag
     1501 atttgtgctg ataaagctct tcttggtttg gttttgcaaa atttgattta taatgctatt
     1561 gatgcgatag aagaaagcga atgtgaaaag cctatgatta aaattttagc aagttatgat
     1621 aatgaaaaaa tatgcatcag agtgtatgat aatggttgtg aaataaaaga tgagaaattg
     1681 gtttttgaag cttttaaaac aacaaaactt aaaggcaatg gacttggctt gtctctttct
     1741 aaagaaatca taaacgctca taagggagag ttaagttttc aaagtgatcc taagaatttt
     1801 tattttacct tacctttggc gtgataaata ttttcttt
//
LOCUS       DAPOLW010000189         1827 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.189, whole genome shotgun sequence.
ACCESSION   DAPOLW010000189 DAPOLW010000000
VERSION     DAPOLW010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1827
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.189"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..311
                     /locus_tag="ROE18_001733"
     CDS             <1..311
                     /locus_tag="ROE18_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HDX3651887.1"
                     /translation="WLKIFTKEIYKEFSDCPLELQKELFEKILFCEKAMIEFYKPEKI
                     NIASFANYVPRVHFHVMARFKEDAFFPECMWGKQQRETIKLDLPKFEEFVKFLNSKIF
                     "
     gene            385..957
                     /locus_tag="ROE18_001734"
     CDS             385..957
                     /locus_tag="ROE18_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HDX3651888.1"
                     /translation="MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISN
                     VKGNFKDYSAVIDFDPASAEFKKLDVTIKIASVNTENQTRDNHLQQDDFFKAKKYPDM
                     TFTMKKYEKIDNEKGKMTGTLTIAGVSKDIVLDAEIGGVAKGKDGKEKIGFSLNGKIK
                     RSDFKFATSTSTITLSDDINLNIEVEANEK"
     gene            complement(962..>1827)
                     /locus_tag="ROE18_001735"
     CDS             complement(962..>1827)
                     /locus_tag="ROE18_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651889.1"
                     /translation="FLTLVLLGAKLPYFYTSFFQANLFVALFLPMIFTLFCVGKHHVL
                     ILNKKNIASITTLIFIGILSIILPRNTTFNSAGLEFHFIALDFFKPVSELGFLFFLVG
                     LILIFIKTFKTKEYYLLIAFFTAYFQFLFQEGAGIRYFEFASLVFCFYLLNHAYRLAF
                     FDTLTKLPNEKSLTRFTKGKNNYIIALLHFNELKDTKESYTKLILKQIAKILKRFRAK
                     IFIVENDFILIFNDKNQALNHLAFLESTLKNTEFNLENENFKPDFKLIWQESEENLDK
                     NLQSLRARLLD"
BASE COUNT          726 a          204 c          275 g          622 t
ORIGIN      
        1 cttggcttaa aatttttact aaagaaattt ataaagaatt tagcgattgt cctttagagt
       61 tgcaaaagga actttttgaa aaaattttat tttgtgaaaa ggctatgata gaattttaca
      121 aacctgaaaa aatcaatatc gcctcttttg caaattatgt gccaagggtg cattttcatg
      181 ttatggcaag atttaaagaa gatgcgtttt ttccagagtg tatgtgggga aaacagcaaa
      241 gagaaacaat aaagcttgat ttgcctaaat ttgaagaatt tgtaaaattt ttaaatagta
      301 aaattttttg atttttatta atgatttgtt atgttttatc taataaaatt tttatattga
      361 aaattactat aaaaaaggaa aaaaatgaaa aaagttttat tgagttcatt ggttgcggtg
      421 tctttgttaa gcacaggttt gtttgctaaa gaatatactt tagataaagc acatacagat
      481 gtaggtttta aaatcaaaca tttacaaatt agcaatgtaa aaggaaattt caaagattat
      541 tctgcggtga ttgattttga tcctgcgagt gctgaattta aaaagcttga tgtaactata
      601 aaaatcgcat ctgtaaatac agaaaatcaa acaagagata atcacttaca acaagatgat
      661 tttttcaaag caaaaaaata tcctgatatg acttttacaa tgaaaaaata tgaaaaaatc
      721 gataatgaaa aaggcaaaat gacaggaact ttaactatag ctggagtttc taaagatatc
      781 gttttagatg ctgaaatcgg cggtgtagct aaaggcaaag atggaaaaga aaaaatagga
      841 ttttctttaa atggaaaaat caaacgctct gattttaaat ttgcaacaag tacttcaact
      901 attactttaa gtgatgatat taatttaaat atcgaagttg aagcgaacga aaaataattt
      961 tttagtctaa gagtcttgct cttagacttt gtaaattttt atccaaattt tcttcacttt
     1021 cttgccaaat caatttaaaa tccggtttaa aattttcatt ttctaaatta aattccgtgt
     1081 ttttcaaggt ggattctaaa aaagcaagat gatttaaagc ttgattttta tcattaaaaa
     1141 ttaaaataaa atcattttct acgataaaaa tttttgctct aaagcgtttt aaaatttttg
     1201 caatttgttt taaaatgagt ttggtatagc tttctttggt atcttttagt tcattaaaat
     1261 gaagcaaggc aatgatatag ttgttttttc cttttgtaaa gcgtgtaagg cttttttcat
     1321 tgggtagctt tgttaaggtg tcaaaaaaag ctaacctata agcgtgattt aaaagataaa
     1381 aacaaaaaac caaacttgca aattcaaaat atcttattcc tgctccttct tggaataaaa
     1441 attgaaaata cgcagtaaaa aatgcgataa gaagataata ttctttagtt ttaaaggttt
     1501 tgataaaaat gagtattaag ccgactaaaa aaaataaaaa tcctaattca ctcacaggtt
     1561 taaaaaaatc taatgcaata aaatgaaatt ctaaaccagc actattaaaa gtagtatttc
     1621 taggtaaaat gatacttaaa atgcctataa aaataagggt tgtaattgaa gcgatatttt
     1681 ttttatttaa aattaaaaca tgatgttttc caacgcaaaa tagagtaaaa atcataggta
     1741 aaaataaagc tacaaataaa ttagcttgaa aaaaacttgt ataaaaataa ggcaacttgg
     1801 ctcctaatag cactaaagtt aaaaaga
//
LOCUS       DAPOLW010000190         1800 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.190, whole genome shotgun sequence.
ACCESSION   DAPOLW010000190 DAPOLW010000000
VERSION     DAPOLW010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1800)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1800)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1800
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.190"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            123..305
                     /locus_tag="ROE18_001736"
     CDS             123..305
                     /locus_tag="ROE18_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651890.1"
                     /translation="MKKVVLISALLGAFAANVFAANTPSDVNQTHTKAHHSKAKADKK
                     HEAKTHKKTKEQTPAQ"
     gene            complement(441..515)
                     /locus_tag="ROE18_001737"
     tRNA            complement(441..515)
                     /locus_tag="ROE18_001737"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(480..482),aa:Glu,seq:ttc)
     gene            663..1226
                     /locus_tag="ROE18_001738"
     CDS             663..1226
                     /locus_tag="ROE18_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HDX3651891.1"
                     /translation="MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFG
                     GFQALMPTIGYFIGITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFG
                     FKTMLALAIATSIDALAVGVSFAFLNVNLLLAIFLIGIITFILCIIALKTGNKFGIYL
                     KNKAELLGGLVLIILGVKILIEHLFFD"
     gene            complement(1212..>1800)
                     /locus_tag="ROE18_001739"
     CDS             complement(1212..>1800)
                     /locus_tag="ROE18_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HDX3651892.1"
                     /translation="IIVGGTGFYLKTMIDGLSEKTLESKSSLNNDEIYALLLNIDPNY
                     KIEKNDTYRLKKWLGIYEQTREIPSEFLKRTQKTGVLKDIEIYELAWDKEILKKRIKT
                     RTKEMLDNGLLDEAKILFSKFDHKLKALNSIGLKECKEYLDGEISFKELENLITIHTT
                     QLAKRQRTFNKKFQSKALEFDKALATLRMKFSIEK"
BASE COUNT          631 a          237 c          227 g          705 t
ORIGIN      
        1 ataatttaaa tatatataaa aaattatatt tttttgaaat atttttacaa aaaatatcta
       61 tttgttgatt tttaataatt acaattaatt tgcaactaaa aattattcat aaggaggaaa
      121 atatgaaaaa agttgtacta atctcagcat tactaggtgc tttcgcagct aatgtttttg
      181 cagctaatac tccaagcgat gtaaatcaaa cacatacaaa agctcatcat tcaaaagcta
      241 aagctgacaa aaaacatgaa gctaaaactc acaaaaaaac aaaagagcaa acaccagctc
      301 aataatgccc agccttgata taagtctata atagacttat atcaaaagct attcgtattc
      361 tacaaaataa attattaata tttattaaat ttcaatagaa aaaatgaaaa aattgttatt
      421 ttaaaagaaa aattaaaaag tggtgaccca tacgagactc gaactcgtgt taccgccgtg
      481 aaagggcgat gtcctaaccg ctagacgaat gggccacttt taaggagtaa aaaataaaaa
      541 tgaaattgaa ttatatatat ttatttctta aaatttaatt aaatatatca aaattatgtg
      601 atttttatct ttgtttgatt ataatttcat cttcaatttt ttataaaatt ttaggattta
      661 ttatggattt ttatagtctt atttttttat cctgtgcttt aggaatggat gcttttgctg
      721 tatcactatg caaaggtttt agtgttaaaa aactacattt aaaacattat cttattgttg
      781 gaatttattt tggtggattt caagctttga tgccaactat tggttatttt ataggcataa
      841 cttttgcatc ttttattgcg agtattgatc attggatagc ttttatttta ctttctttaa
      901 taggattaaa aatgatcaaa gagtcattgg aaaatgaaaa ttgcgatagt aatgccaatc
      961 aatttggctt taaaaccatg ctagctttag caattgctac gagtatcgat gcactagcag
     1021 ttggtgtgag ttttgcattt ttaaatgtaa atttattatt agctatattt ttaataggta
     1081 ttatcacctt cattttatgt atcattgctc taaaaacagg gaataaattt ggaatttatc
     1141 ttaaaaataa agctgaactt ttaggcggat tggttttaat tatactagga gtaaaaattc
     1201 taatagaaca tttatttttc gattgaaaat ttcattctta aagtagctaa agctttatca
     1261 aattccaagg ctttactttg aaatttttta ttaaaagttc tttgtctttt ggcaagttgt
     1321 gtagtatgta tcgtgattaa attttcaagc tctttaaagg aaatttctcc atctaaatat
     1381 tctttacact ctttcaaacc tatagaattt aatgctttaa gtttatgatc aaatttagaa
     1441 aaaagaattt ttgcttcatc taaaagtcca ttatcaagca tttcttttgt tctagtttta
     1501 atacgttttt ttaaaatttc tttatcccac gcaagctcat aaatttctat atctttaagc
     1561 accccagttt tttgtgttct ttttaaaaat tcactaggaa tttctcttgt ttgttcataa
     1621 atacccagcc atttttttaa tctataagta tcattttttt ctattttata gtttggatca
     1681 atatttaata aaagagcata aatttcatcg ttatttaaag aactctttga ctctaaggtt
     1741 ttttcactta aaccatctat catagttttt aaataaaatc cagttccacc tactataatt
//
LOCUS       DAPOLW010000191         1771 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.191, whole genome shotgun sequence.
ACCESSION   DAPOLW010000191 DAPOLW010000000
VERSION     DAPOLW010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1771)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1771)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.191"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            136..870
                     /locus_tag="ROE18_001740"
     CDS             136..870
                     /locus_tag="ROE18_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HDX3651893.1"
                     /translation="MGRNGDIFDFHFDTEKFKFYLKNRDKKVTYQDLMEILYKNGIES
                     SEATIKKWLMSKEDNKTKPKPQYIKILCNALDIPFNEVILQDVFRNDNQINFRYFPDI
                     YASAGLGTSSQSEEVKIVSVDENFLKEILDIPIKKSYDIIKINGDSMEPILSNGDFII
                     VDRSKNSLQTISNADIVIFRKNDDLFCKKIKKEPFEDYIFLVSENKKYEDKKVDNSEF
                     EQCEILGAVVSKMAIETFKNFIEVVG"
     gene            867..1274
                     /locus_tag="ROE18_001741"
     CDS             867..1274
                     /locus_tag="ROE18_001741"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651894.1"
                     /translation="MKRKNIQNINNELIKEQKNLKEIFCENEYNNLSLLHYSINMIEN
                     ETIKAQKVDKIDKENYLTKFCIDRDFSFVIVNILAEKIPKSQIKIALQRLEKYVIIYQ
                     SIDSLVIERNEIEKTQRFSKIKYGKSIEWQEEN"
     gene            1313..>1771
                     /locus_tag="ROE18_001742"
     CDS             1313..>1771
                     /locus_tag="ROE18_001742"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651895.1"
                     /translation="MEENKEYWYNVALLEKLWEKIPQCNTNTLNANEVFNIIKKEKIK
                     IGIHSICKFFKITLIKTNGKKFVIFNENNKLIIHYHNESDIFYFLGHIFHNFLDGAYF
                     KYPFKKRTWDLEHREKLAKKFAIRLKLLIAGYELTSGLGKYFEAISNLRKH"
BASE COUNT          795 a          161 c          255 g          560 t
ORIGIN      
        1 atcaaaaaaa tctatttttt tcataacgaa agtataaaat aaagaaactt aataaatatt
       61 taattatgtt tctaattatg gaacattatt tgcttgaaaa aagtgtataa tttttatact
      121 aaaaaaggag agaatatggg aagaaatgga gatatattcg attttcattt tgatactgaa
      181 aaatttaaat tttatttaaa aaatagagat aaaaaagtta catatcaaga tttgatggaa
      241 attttatata aaaatggcat agaaagctca gaagcaacaa taaaaaaatg gttgatgtct
      301 aaagaagata ataaaacaaa acctaaacca caatatataa aaattttatg caatgcatta
      361 gatattcctt ttaacgaagt gatattgcaa gatgttttta gaaatgataa tcaaattaac
      421 ttcagatatt ttccagatat ttatgcaagt gcaggacttg gaacatcatc tcaaagtgaa
      481 gaagttaaaa tagtttcagt tgatgaaaat tttctaaaag aaattttaga catacctata
      541 aagaagagtt acgatattat aaagattaat ggcgacagta tggaacctat tttatctaat
      601 ggtgatttta ttattgtaga tagaagcaaa aattcacttc aaactatttc aaatgcagat
      661 attgttattt ttagaaaaaa tgatgattta ttttgtaaaa aaattaaaaa agaacctttt
      721 gaagattata tttttttagt ttctgaaaat aaaaaatacg aggataaaaa agtagataat
      781 agcgaatttg aacaatgcga gatcttaggc gctgtagtat caaaaatggc gattgaaacc
      841 tttaaaaatt ttatagaagt ggtgggatga agagaaaaaa tatccaaaat attaacaatg
      901 agttgattaa agagcaaaag aatttaaaag aaatattttg tgaaaatgag tataataatc
      961 taagcttgct tcattattct attaatatga tagaaaacga aacaatcaaa gcacaaaaag
     1021 tagacaaaat agataaagaa aactatttaa caaaattttg cattgatagg gacttttctt
     1081 ttgttattgt aaatatattg gcagaaaaaa tacccaaaag ccaaattaaa attgcactac
     1141 aaagattaga aaagtatgtt ataatctatc aatcaataga cagtttagtt atagaaagaa
     1201 acgaaattga aaaaactcaa agattttcaa aaataaaata tgggaagtca atagaatggc
     1261 aagaagaaaa ctaaatcaaa aaaaaagatt taagatcttt aagaaaatat tcatggaaga
     1321 aaataaagaa tattggtata atgttgcatt attagaaaaa ctttgggaaa agataccaca
     1381 atgcaataca aatactttaa atgctaatga agtatttaat attattaaaa aagaaaaaat
     1441 aaaaataggc atacacagta tttgcaaatt ttttaaaata acactaatta aaactaatgg
     1501 taaaaaattt gttattttta acgaaaataa caaattgata atacattatc acaatgagag
     1561 tgatatattt tattttttag gacatatttt tcataatttt ttagatggag catattttaa
     1621 atatcctttt aagaagcgta cttgggattt agaacataga gaaaaactgg ctaaaaaatt
     1681 tgcaattcgc ttaaagttat tgattgcagg atacgaatta acatctggtc ttggaaagta
     1741 ttttgaagca ataagcaatt taagaaaaca t
//
LOCUS       DAPOLW010000192         1766 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.192, whole genome shotgun sequence.
ACCESSION   DAPOLW010000192 DAPOLW010000000
VERSION     DAPOLW010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1766)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1766)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1766
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.192"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..213)
                     /locus_tag="ROE18_001743"
     CDS             complement(<1..213)
                     /locus_tag="ROE18_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDX3651896.1"
                     /translation="MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDA"
     gene            complement(310..>1766)
                     /locus_tag="ROE18_001744"
     CDS             complement(310..>1766)
                     /locus_tag="ROE18_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDX3651897.1"
                     /translation="KVYKVVLFDCVAKDLEIQIAMIFDQQSILEYLSLYEMFISSHYY
                     LKYYETSILSLNELCIKSASVAIRNADITCFLPLLTHGQFLQNIPSMLESIPFQRILS
                     QRKNKFENAIVVSAGPSLAKQLPLLKAYQDKAVIFCADGALSMLEKEGIIPDYVTNLD
                     FTDLAMKFFQNKENLKQSIIALECATHPNIVRSLNAENCMIVLRNKALYQRFNLNDFG
                     YIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDKEGNSHSKGFDFGEKFSGEENIDK
                     LKVPAYAGKGEVLTHITWNDYRIKLEYLFACNDQKAKFYNATEGGARINFTEELSFKE
                     CCEKFLTKEKPKFELPKSLTKNRSDKLLVKFKEKIQKDQENAKRFLDDALALKQILEN
                     ILSKDFILPLEFLEKVYQNIENFNHSLDEDEFIQDETLRGAFAYRGKMIADVLKLHIQ
                     DKTHFITAYIKAYHEWLLYFMEKLEQKYKSLSKV"
BASE COUNT          600 a          294 c          232 g          640 t
ORIGIN      
        1 agcatcgtta ccattagata tagcttgacc taaagtatta gcttgagatc ttaaactgtc
       61 tgctatcgcc atccctgaag catcatctgc tgcggagttg attctaagac ctgaactaag
      121 tctgcttaaa gaagcatcta aacttttact atttaaatca gcgtttgctt ttgcatttaa
      181 agctgcaaca ttggtgttaa tacgaaatcc cattttaaat ccttttaaaa aaattcaagc
      241 tcatccatga acttgttaaa tgctatatcg tgcaatcaaa aaaatatttt atactttagc
      301 aataaaattt catacttttg acaaagactt gtatttttgc tctaactttt ccataaaata
      361 aagcaaccat tcatggtaag ctttaatata agctgtgatg aaatgcgttt tatcttgtat
      421 atgaagtttc aatacatcag caatcatttt tccacgataa gcaaaggctc ctcttaaagt
      481 ttcatcctgt ataaactcat cttcatctaa agagtgattg aaattttcta tgttttgata
      541 gactttttct aaaaattcca aaggcaagat aaaatcttta ctgagtatat tttctaaaat
      601 ttgttttaaa gctaaagcat cgtctaaaaa tcttttagca ttttcttgat ctttttgtat
      661 tttttctttg aatttaacta ggagtttatc acttctattt ttagttaaac tttttggaag
      721 ttcaaatttg ggtttttctt ttgtaaggaa tttttcacaa cattctttaa aggaaagttc
      781 ttcagtgaaa ttaatccttg ctccaccttc agtagcattg taaaatttag ccttttgatc
      841 attgcaagca aaaagatatt caagttttat acgataatca ttccaggtta tatgagttaa
      901 aacttcacct ttacctgcat aggcagggac tttaagttta tctatatttt cttcaccgct
      961 aaatttctcc ccaaaatcaa aaccttttga gtgtgaattt ccttctttat caaaggctaa
     1021 atcttgccct atcataataa tatttttaaa tcccaaagcc aaagctaaag tataagaaaa
     1081 atgacttaca tgagtacctg tatcaatata accaaagtca ttaagattga agcgttgata
     1141 aagggcttta tttcttaaaa caatcataca attttcagca tttaaactac gcacgatatt
     1201 aggatgcgta gcacactcaa gagcaatgat gctttgtttt aaattttctt tattttgaaa
     1261 aaatttcatt gctagatcag taaaatctaa attcgtaaca taatcaggta ttatgccttc
     1321 tttttcaagc atgcttaaag ccccatcagc acaaaagatc actgctttat cttgataagc
     1381 tttaagtaaa ggaagttgtt tagctaaact aggtcctgca gaaactacta tagcattttc
     1441 aaatttgttt tttctttggc ttaagattct ttgaaaagga atgctttcaa gcatagaagg
     1501 gatgttttgt aaaaactgtc catgtgttag caaaggtaaa aaacaagtaa tatctgcatt
     1561 ccttattgct acacttgcac ttttaataca aagttcattt aaagataaaa tagaagtttc
     1621 atagtattta agataataat gcgagctaat aaacatttca tataaactta aatactctaa
     1681 aatactttgc tgatcaaaaa tcatagcaat ttgaatttct aaatcctttg caacacagtc
     1741 aaataataca accttataaa ctttca
//
LOCUS       DAPOLW010000193         1693 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.193, whole genome shotgun sequence.
ACCESSION   DAPOLW010000193 DAPOLW010000000
VERSION     DAPOLW010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1693)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1693)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1693
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.193"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..1570)
                     /locus_tag="ROE18_001745"
     CDS             complement(<1..1570)
                     /locus_tag="ROE18_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HDX3651898.1"
                     /translation="MIQTRFICGSRILFKGIKTKFESILKENKNDFAKLLLENFKEFD
                     IPFIKQEFNILKDFGGLNHLRSLESLLVLFKTSPKNYALNFIDEKNLSELRLAGDFLL
                     SLKSAMNLLSAKDEDEFLLINVHDLSELMYKKAKKHFGANELLVQKALQSMHTIGFYT
                     HFLAKQIQDGLNHTLKQEYKFKTLVEVLEYLLKLEDKQVIFDLHLVFALRRLKYGKKD
                     IEKALILFEKIFYKRHSFCVLKLLLDSGILKDLCKPFWTVRFLSDEEGNYSFDEQVFL
                     MLSEFEKYEDELETLQKLKTDEKMILKLVILLSAIESENEISLAGIYRAYCSKFDLKN
                     EILEWGLKIFKNNNALKDLVEKEDIYNPIVVSSLVSKLENLENLELLYTLTWLKAKAL
                     NYNAFYFRVLDKLLENAKQGFEDENLLEESARRVKKELTLKRSKIFLEQDEILQDKII
                     HIKSNLFIIKNTFEDIVMISKLAKENDFKFWFSNETNLSLQIVAPLHFNIAIILSSLT
                     NLNLIFMNFFELFDD"
BASE COUNT          625 a          265 c          169 g          634 t
ORIGIN      
        1 tatcatcaaa aagttcaaaa aaattcatga aaataagatt taaatttgtt aaagaactta
       61 aaataatggc aatattaaaa tgaagtggtg caacaatttg caaactaaga tttgtttcat
      121 tactaaacca aaatttaaaa tcattttctt tggctaattt agaaatcata acaatatctt
      181 caaaagtatt ttttataata aaaagatttg atttgatatg tatgatttta tcctgcaaaa
      241 tttcatcttg ctctaaaaaa atcttacttc ttttaagtgt taattctttt tttacccttc
      301 ttgcactttc ttcaagtaga ttttcatctt caaaaccttg ttttgcattt tctaaaagtt
      361 tatcaagaac tctaaaataa aaagcattat aatttaaagc cttagccttt agccaagtta
      421 aagtatataa aagctctaaa ttttctaaat tttctagctt agaaaccaaa ctacttacaa
      481 caataggatt gtatatatct tctttttcta caagatcttt taaggcatta ttgtttttaa
      541 atattttaag accccattct aaaatttcat tctttaaatc aaatttggag caatacgctc
      601 tatatatgcc tgctaaagaa atttcatttt cactttctat agcacttaaa agtattacga
      661 gctttaaaat cattttttca tcggttttaa gtttttggag tgtctcaagc tcatcttcgt
      721 atttttcaaa ttcacttaac ataagaaaaa cttgctcatc aaaactataa tttccttctt
      781 catcgcttaa aaaacgaact gtccaaaaag gcttgcataa atcttttaaa attccactat
      841 caagcaaaag ttttaaaaca caaaaactat gccttttata aaaaattttc tcaaaaagta
      901 ttaaagcttt ttctatatct tttttaccgt atttcaatct tcttagggca aaaaccaagt
      961 gaagatcgaa aataacctgt ttatcttcaa gttttaataa gtattctaaa acttccacaa
     1021 gagttttaaa tttatattct tgtttaagag tatgatttaa tccatcttga atttgctttg
     1081 ctaaaaagtg tgtataaaaa cctatagtat gcatactttg taaagccttt tgaaccaaca
     1141 actcatttgc tccaaaatgt tttttagctt ttttatacat taattcactc aaatcatgaa
     1201 cattaataag taaaaactca tcctcatctt tagcacttaa taaattcatc gctgatttta
     1261 aagaaagtaa aaaatctcca gctaaacgca actcgcttaa atttttttca tctataaaat
     1321 ttaaagcata attttttgga gaagtcttaa aaagaacaag caaactctct aaggatctta
     1381 aatgatttaa tccgccaaaa tcttttaaga tattaaattc ctgctttata aatggaatat
     1441 caaattcttt aaaattttct agcaaaagct tggcaaaatc atttttattt tcttttaaaa
     1501 tactctcaaa ttttgtctta atccctttaa ataaaatcct agaaccacat atgaaacgag
     1561 tttgtattat agaagtctta agctcattgc tagcattata aagtccgtta aattctaaga
     1621 taacagagtc aatttgcaaa tgcgcatcat ttaaaatttc gataaaagcc ttaatcatag
     1681 gttttaaatg aaa
//
LOCUS       DAPOLW010000194         1621 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.194, whole genome shotgun sequence.
ACCESSION   DAPOLW010000194 DAPOLW010000000
VERSION     DAPOLW010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.194"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            242..1363
                     /locus_tag="ROE18_001746"
     CDS             242..1363
                     /locus_tag="ROE18_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
                     /protein_id="HDX3651899.1"
                     /translation="MIYCDHCVMPNTRPGINFTKDKEGKNICSACINHKNKENIDYKA
                     RFKELEALCDKYRRMNGKFEYDCAIAVSGGKDSHFQVHIMKEKLGMNPILFSVEDNFT
                     MTEAGKKNLRNLSETFGCHIISLKPDIKTQKKVMLKTFEKYGKPTWFIDRLIYSYPFA
                     MALKFNTPLLVYGENVSYEYGGSDDKETPSAKEIFLNGTASDLDINEFIDNEIKEENL
                     QLFFNPNANDINKLNPIYLSYFVKWNSYSNYIFAKSRGFTDLEGEWDRTMCAENFDQV
                     DSIGYILHAWMKYPKFGHACASDYAARFVRYGLLSRKEAIELVQKRDRKLDNRCVEDF
                     CNFIGISKTTFWKIVEKHYNMDLFYKNDFGEFKLKNKLQ"
     gene            1381..>1621
                     /locus_tag="ROE18_001747"
     CDS             1381..>1621
                     /locus_tag="ROE18_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HDX3651900.1"
                     /translation="MQNSLETYTMKYNENGYGLLFPDGHVVRFYERILKYKLNKINGN
                     LLDFGCGNGVHSAYFQSKGFKTFGIDIVPSLKEIWE"
BASE COUNT          645 a          180 c          275 g          521 t
ORIGIN      
        1 aaaaaagaaa tttgttaaat attatcgaca ctataggcat agaactttgt aataaaattt
       61 gtaagaattt aaaagaagat gatgaaaatt tttaccatcc aaaaatcttt aaaaaggcct
      121 tataaaaagg aattttaggt agaaaaataa aacaaacata agtgatattt tataaaataa
      181 gcaaatatta atttaatatt ttatacaatc taatattttt attaaattga aggggtgggg
      241 aatgatttat tgtgatcact gcgtgatgcc aaatactaga cctggtatta attttacaaa
      301 agataaagaa ggtaaaaata tctgttcagc ttgcatcaat cataaaaata aagaaaatat
      361 tgattataaa gcaagattta aagagcttga agccttatgc gataaatacc gcagaatgaa
      421 tggaaaattt gaatatgatt gcgctattgc cgtaagtgga ggtaaagatt cgcattttca
      481 agtgcatatc atgaaagaaa aacttggaat gaatcctatt ctttttagcg ttgaagataa
      541 tttcaccatg actgaagcag gtaagaaaaa tcttagaaac ttaagtgaaa cttttggttg
      601 tcatattatt agcttaaagc ctgatatcaa aactcaaaaa aaagttatgc taaaaacctt
      661 tgaaaaatat ggaaaaccca cttggtttat tgatagactg atttacagct atccttttgc
      721 tatggcttta aaatttaata cacctttatt ggtttatgga gaaaatgtta gttatgaata
      781 tggaggtagt gatgacaaag aaactcctag cgccaaagaa atatttttaa atggtacagc
      841 tagtgattta gatataaatg aatttataga taatgaaatc aaagaagaaa atctacaact
      901 cttttttaat cccaatgcaa atgatatcaa caaacttaat cctatttatc taagttattt
      961 tgtaaaatgg aattcttata gcaattatat ttttgctaaa agtcgtggtt ttactgatct
     1021 agaaggcgaa tgggatagaa caatgtgtgc agaaaatttt gatcaagttg atagtatagg
     1081 ctatatccta cacgcttgga tgaaataccc taaatttggt catgcttgtg cgagtgatta
     1141 cgcagctcgt ttcgtgcgtt atggactttt aagcagaaaa gaagctattg aacttgtgca
     1201 aaaaagagat cgtaagcttg acaatagatg cgttgaagat ttttgcaatt tcataggtat
     1261 tagtaaaact acattttgga aaatagtaga aaaacattac aatatggatt tattttataa
     1321 aaatgatttt ggagaattta aattaaaaaa taaattacaa taaaaatata aaggaaagaa
     1381 atgcaaaact cattagaaac ttatacaatg aaatataatg aaaatggata cggattactt
     1441 tttccagatg gtcatgtagt acgtttttat gaaagaattt taaaatacaa actaaataaa
     1501 ataaatggaa atttacttga ttttggttgt ggcaatggtg tacattcagc gtattttcaa
     1561 agcaaagggt ttaaaacctt cggaatagat atagttccaa gtttaaaaga aatttgggag
     1621 c
//
LOCUS       DAPOLW010000195         1620 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.195, whole genome shotgun sequence.
ACCESSION   DAPOLW010000195 DAPOLW010000000
VERSION     DAPOLW010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1620)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1620)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1620
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.195"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            14..1506
                     /locus_tag="ROE18_001748"
                     /pseudo
     CDS             14..1506
                     /locus_tag="ROE18_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004275251.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
BASE COUNT          531 a          228 c          245 g          616 t
ORIGIN      
        1 aaggtattgg gaagtgacta aacaagaaat acaaaaactc gatacaaatt tcctaggtca
       61 tcgcaagccc ttattctctt tatcaatggt agaactttgg gaaagatttg ctttttatgg
      121 catacgatct ttacttgtgc ttttcatggc aacaaccata agcaaaggta gacttggaat
      181 aagcactgaa tacgcctcgg caatttatgg catttttgca ggatgcttgt atttagcagc
      241 acttcctgga ggctggatta ctgataatta tttagggcaa aaaaaggctt tatttttagg
      301 ttcttttatt atagctttag gacatattag catagcctta tctattttaa gcacacctat
      361 gtttttccta gggcttactt ttatcgttat tggtactgga ttttttaaaa ctaacgcttc
      421 tgtaacagtt ggaatgttgt ataaacaaaa tgatacaaga tgcgatactg gctatacgat
      481 tttttatata ggaattaaca ttggagcatt cattgctcct cttatatgtg gttttgttca
      541 agcaaaatgg aattatcatt taggatttgt cataggaggt ttaggtatgc taatctcttt
      601 gcttatttta tattttaaag ctgcccttga gcttgaagaa tttcataaaa attgaacctt
      661 aaagcaaaac tgggaataac catttaaaaa agtaaaaaat ttaactctta tactaagtat
      721 aagcttgtta agtattattg gattttttct aatgtttatt aatcttgtaa atattaatcc
      781 catataatac tatcaaaaaa acttctaatt gtaattttac tatgtttggt aatttatttc
      841 atatatcttt ttgtttttaa agctttaaat aaaagagaaa aacagcaatt aacaatttta
      901 attgttttat tctttgcagc cacttttttt tggagtgctt ttgaacaaaa acctactgct
      961 tataatcttt ttgcgcaaga ttttacaaat agaaatattt ttgattggaa aattctaaca
     1021 aactggtttc aatcttttaa tccaattttt atcatcatac ttgctcctat agcaagttat
     1081 atttggatat ttttagagaa aaaaaatata tatttttctt ccattggaaa atttacttta
     1141 ggaatattat ttgccggtat tggttttatg atgatgacct ttgcttcaca aaatctaata
     1201 aacaacaatg gtttgccaat atccatggct tggattatca taagtatatt ctttttaaca
     1261 cttggggaat tatgcgtgtc tcctattgga ctctctataa tggctaaggt tgcccctgat
     1321 ttaatcaaaa atcaaatcat gggactttgg tttgtagcaa gtgcgcttgg aaattttgtt
     1381 gcaggactta taggaggaaa tgtcaatatt aaaaacatcg atcaacttcc taatattttt
     1441 ggacaatgca tgtggatgct ttttgttgta tcacttttgc tttttattgc taaaaaacca
     1501 tcttaacaaa aaaaataagc aattatctaa ctaaacttaa aatacaaaat acaccaaagt
     1561 tgaaaattga tcttaatatt tctttttttt atatttgcaa aaaagtaaca ttatgatata
//
LOCUS       DAPOLW010000196         1552 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.196, whole genome shotgun sequence.
ACCESSION   DAPOLW010000196 DAPOLW010000000
VERSION     DAPOLW010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1552)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1552)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1552
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.196"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..1179
                     /locus_tag="ROE18_001749"
     CDS             <1..1179
                     /locus_tag="ROE18_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HDX3651901.1"
                     /translation="SNITFNDVAGVDEVKMELSELVDFLQNPKKYKEFGVKMPKGVLM
                     VGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEIYVGMGAKRVRELFSKAKMMVPSIV
                     FIDEIDAVGKARGEMSNVERDSTLNQLLTQMDGFEDNSGVIVIAATNKIELMDPALLR
                     SGRFDRRIFLSLPDFKDRLKILEIYMKDKNNNINLNKIAKASVGFSGAGLETLVNEAA
                     INALRRNSALVEESDFYAVLNKVLLGKKKILSFNNEEKKIQATYQAAKALSAYYFDIG
                     FEKITLIEDRFKEYEHNIRSKSELINRIKVYLAGSRAMRLIYNESYTNSQDDFLKIKE
                     LLDYMLSFDMLKESNLSEQKKEMDEFLNSMKDKILKLSELLLEKEKIEYDDVKDIMQV
                     "
     gene            complement(1188..>1552)
                     /locus_tag="ROE18_001750"
     CDS             complement(1188..>1552)
                     /locus_tag="ROE18_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HDX3651902.1"
                     /translation="DIIISADNLPNVSKEFLQHNFKAPIGIVQKDKNSYEVYLSDGTE
                     LEFDIDGAWKEIENKAFPFDLDFLPQNLANIIKNEFPNTKAREIERKINHYKIKLDND
                     IKILIDFNGTILYKEFDD"
BASE COUNT          557 a          166 c          295 g          534 t
ORIGIN      
        1 tcaaatatta cttttaatga tgtagcaggt gttgatgaag ttaaaatgga gctaagcgaa
       61 cttgtggatt ttttacaaaa tcctaaaaaa tataaagaat ttggtgtaaa aatgccaaaa
      121 ggtgttttaa tggtaggccc acctggtgta ggaaaaacat tgatagcaaa agcagttgca
      181 ggagaagcag gggtgccatt tttttatcaa agtggttcaa gttttgttga aatttatgta
      241 ggtatgggtg caaaaagagt tagagagctt ttttcaaaag ctaaaatgat ggtgcctagc
      301 atagttttta ttgatgaaat agatgccgta ggtaaggcaa gaggagaaat gtcaaatgtt
      361 gaaagagata gcactttaaa tcaactttta actcaaatgg atggttttga ggacaatagc
      421 ggggttatag ttatagctgc gacaaataaa atcgaactta tggatcctgc tttattgcgt
      481 tcgggacgtt ttgataggag aattttttta tctttgcctg attttaagga tagacttaaa
      541 attttagaaa tttatatgaa agataaaaac aataatatca atttaaataa aatcgctaaa
      601 gcaagcgtag gttttagtgg agcagggctt gaaactttgg tcaatgaagc agcaattaat
      661 gctttaagaa gaaatagtgc tttagttgag gaaagcgatt tttatgctgt attaaataaa
      721 gttcttttag gtaagaaaaa gattttaagt tttaataatg aagagaagaa aattcaagcc
      781 acttatcaag ctgcaaaagc tttgagtgcg tattattttg acataggatt tgaaaaaatc
      841 actctcattg aagatcgttt taaagaatat gagcataata taagatcaaa atcagagctt
      901 atcaatcgta taaaagttta tttggctggt tctagagcca tgagattgat ttacaatgaa
      961 agttatacta actcgcaaga tgatttttta aagattaaag aattgcttga ttatatgttg
     1021 agttttgata tgttgaaaga gtcaaattta agtgaacaaa aaaaagaaat ggatgaattt
     1081 ttaaattcta tgaaggataa aattttaaaa ttatcagagc ttttgcttga aaaagaaaag
     1141 atagaatatg acgatgttaa agatataatg caggtttgat gatatgttta atcatcaaat
     1201 tctttatata agatagttcc attaaaatct ataagaattt ttatatcgtt atcaagttta
     1261 atcttataat ggttgatttt tctttcaatt tctctagctt ttgtatttgg aaattcgttt
     1321 ttgatgatat tggctaaatt ttgaggtaaa aaatctagat caaaaggaaa ggctttattt
     1381 tcaatttcct tccaagctcc atctatatca aattcaagct ctgttccatc gctaagatag
     1441 acttcatagg aatttttgtc tttttgcacg atccctatag gcgctttgaa attatgttgt
     1501 aaaaattctt tagaaacatt tggtaaatta tcagcagaaa ttattatatc ag
//
LOCUS       DAPOLW010000197         1522 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.197, whole genome shotgun sequence.
ACCESSION   DAPOLW010000197 DAPOLW010000000
VERSION     DAPOLW010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.197"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            15..>1522
                     /locus_tag="ROE18_001751"
     CDS             15..>1522
                     /locus_tag="ROE18_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase"
                     /protein_id="HDX3651903.1"
                     /translation="MIQKALALAEELQGQIEANISNSEKEFHAKMQKLLNNPKNKVML
                     IELLDRSFRCKDKNASFELIEYTLSKYGIADFFSTFEKFLLFSFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANPSVLEPHIKKRKEQDKITLNVNLIGEEVLGEAESKYRMQKY
                     EEALKSSYITYISIKITTIFSQINIIDFNYSKEEVVKRLDYLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVAKFDIKAGIVLQAYIPDSYKYLKKLFAFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQRGWELPTFYKKIDTDSNYNKMLDFILEGDNYKYIN
                     IGIASHNIFEIAYAYTRISEVGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDKNWNIQKELFLKSLEGIKTLDNTT
                     HRKQDRNKESNIISSYEGKKFSNESDTDFILAQNRVWAKEIKTKYENLKDYDV"
BASE COUNT          571 a          183 c          258 g          510 t
ORIGIN      
        1 ttaggagata cgaaatgata caaaaagctt tagccttagc tgaagaatta caaggacaaa
       61 tagaagccaa tatttcaaat tctgaaaaag aatttcatgc taaaatgcaa aaacttctta
      121 ataatcccaa aaataaagtt atgcttatag agcttttaga tcgttctttt agatgtaaag
      181 ataaaaatgc aagttttgag cttatagaat atactttgag taaatatggc atagcggatt
      241 tttttagcac ttttgaaaaa ttcctacttt ttagcttttt aaattttggc aaatttgctc
      301 ctaatttaag tgtacctttt tttgtcaaac atttaagaga agatactaaa gctatggttc
      361 tagatgcaaa tcctagtgtt ttagaaccac atattaagaa aagaaaagag caagataaaa
      421 ttaccttaaa tgtgaattta atcggcgaag aggttttagg tgaagctgag agtaaatatc
      481 gtatgcaaaa atacgaagaa gccttaaaat caagctatat cacttatatt tccataaaaa
      541 ttactactat tttttcacaa attaatatta tagattttaa ttattctaaa gaagaggtcg
      601 taaaaagact agattatctt tatgctttag ccttagaaga agagaaaaaa caaggtgtat
      661 ctaaatttat caatcttgat atggaagaat ttagggattt agagctcacc gttgcagctt
      721 ttatggaaag tgtggctaaa tttgatatta aagcagggat tgttttgcaa gcttatattc
      781 ctgattctta taagtatctt aaaaaacttt ttgctttttc aaaagagagg gttttaaaag
      841 gtatgaagcc tattaagatc cgttttgtta agggtgctaa tatggaaagt gaagaaacca
      901 ttgcgtctca aaggggttgg gagcttccta ctttttacaa aaaaatagat actgatagta
      961 attataataa aatgcttgat tttattcttg aaggagataa ttataaatac atcaacatag
     1021 gaattgcaag tcataatatc tttgagattg cttatgctta tacacgcata agtgaagtgg
     1081 gtgctttgga ttcttttact tttgaaatgc ttgaaggtat gagtttgcaa tgttcttatg
     1141 aattatctaa aatgcatgat ctaatccttt atgccccagt ttgcgatgaa gcacatttta
     1201 acaatgccat tgcttatctt gtaagacgcc ttgatgaaaa tacaagtgaa gataatttta
     1261 tgcgttattt tttcaatctt aaagtaggag ataagaactg gaatatccaa aaagaacttt
     1321 ttttaaaatc tttagaaggc ataaaaactc ttgataatac tacacatcgt aagcaagata
     1381 gaaataaaga atcaaatatc ataagttctt atgaaggtaa aaaatttagc aatgaaagcg
     1441 atacggattt tattttagca caaaatagag tgtgggctaa agaaattaaa actaaatatg
     1501 aaaatttaaa agattatgat gt
//
LOCUS       DAPOLW010000198         1508 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.198, whole genome shotgun sequence.
ACCESSION   DAPOLW010000198 DAPOLW010000000
VERSION     DAPOLW010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.198"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(110..478)
                     /gene="crcB"
                     /locus_tag="ROE18_001752"
     CDS             complement(110..478)
                     /gene="crcB"
                     /locus_tag="ROE18_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HDX3651904.1"
                     /translation="MLNTLLVVGFGGFIGAILRMLSINLVNKFFPYSISFGTLFVNVL
                     GSFIIGLLFSYAQNKGLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYLHFALN
                     IILNVFLCLFAAWLGFLIFK"
     gene            complement(472..1164)
                     /locus_tag="ROE18_001753"
     CDS             complement(472..1164)
                     /locus_tag="ROE18_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HDX3651905.1"
                     /translation="MIYKKIKALYFWIFFVLSVALVIFCFCFTKSQNTLWKIRKIWAK
                     FQRYTISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIF
                     KVAMKKPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGA
                     KILSEKLNLKVQPILIVDSAKILDTKSFSASSGVLKIICMDLVDTNDEKWLENTRKKM
                     QELLDQERAKLC"
     gene            complement(1145..>1508)
                     /locus_tag="ROE18_001754"
     CDS             complement(1145..>1508)
                     /locus_tag="ROE18_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HDX3651906.1"
                     /translation="ISTQSDLNPVNKDLNIYKQYALWFLAVLFGVLFVWRKNYIILAL
                     AVVCFALSFLVDTNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKV
                     LFSDGKIGWVNKDDLQKN"
BASE COUNT          565 a          238 c          184 g          521 t
ORIGIN      
        1 agctgtaaaa gctgattaac ttcggtttga aattgcattt tgattccttt gtaatttttt
       61 aaagtggtat tttagcaaaa aatacaaatt ctaaagtaaa tttaaagatt tatttgaaaa
      121 ttaaaaagcc aagccatgcg gcaaataagc aaagaaagac atttaagata atatttaacg
      181 caaaatgaag ataatttcca ctttgcaaaa gaagtaaatt ttgataagaa aaagtagaaa
      241 aagttgtaaa agctcctaaa aaacctgtac ttataaagct tttaagtaaa ggagataaac
      301 ctttattttg tgcataagaa aacaaaagtc ctatgataaa agaacccaaa acatttacaa
      361 aaagagttcc aaagctgata gaataaggaa aaaatttatt cactaaattt atagaaagca
      421 ttcttaatat tgctcctata aatcccccaa aaccaactac taaaagagtg tttaacaaag
      481 cttagctctt tcttgatcga gtaattcttg catttttttt ctggtgtttt caagccattt
      541 ttcatcattt gtatcgacta aatccataca aatgatttta agtactccgc tgcttgcact
      601 aaaacttttt gtgtctaaaa tttttgcaga atccacaatt aaaataggtt gaactttaag
      661 atttaatttt tcacttaaaa tttttgctcc actttgaaat ttaagcattt tttcattttt
      721 agatctagtt ccttctggaa aaatagccaa aaccctatct tcactaattc tttcttttgc
      781 ttcttttaaa actcgcacca aatcacgcgg attttttcta tctatacaaa gaagttttgg
      841 ttttttcata gcaactttga aaataggaat ttctcctaat tcttttttgg caatccagca
      901 taaattttta ggatataatt cttctaaagc gatgatatct aaagcacttt gatgattcat
      961 taaaatcatc tgagcttgtg gattaaaagt accaatgatt tcttgtttat aagagatagt
     1021 atatctttga aatttagccc aaattttgcg aattttccaa agtgtgtttt gagattttgt
     1081 aaagcaaaaa caaaaaatca ccaaagcaac acttaaaaca aaaaaaatcc aaaaataaag
     1141 agctttaatt tttttgtaaa tcatctttat taacccaacc tatttttcca tcagaaaaca
     1201 atactttaat ataattttgt cttttgccca aaacttctac tttttcatct gcatttgccg
     1261 tataaaaata agttgaaggc tctgtaggta aaattttagc cctagaacca gccttgataa
     1321 ttgcattttg agtattggta tctacaagaa aactaagtgc aaaacaaaca actgccaaag
     1381 ccagaataat gtaatttttt ctccatacaa ataaaactcc aaataaaacc gctaaaaacc
     1441 acaaagcata ttgtttataa atatttaagt ctttatttac aggatttaaa tcactctgag
     1501 tactaatc
//
LOCUS       DAPOLW010000199         1505 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.199, whole genome shotgun sequence.
ACCESSION   DAPOLW010000199 DAPOLW010000000
VERSION     DAPOLW010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.199"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            166..795
                     /locus_tag="ROE18_001755"
     CDS             166..795
                     /locus_tag="ROE18_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651907.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTDSQICEKLLDDVEKYFIGGG"
     gene            complement(831..1474)
                     /locus_tag="ROE18_001756"
                     /pseudo
     CDS             complement(831..1474)
                     /locus_tag="ROE18_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890434.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
BASE COUNT          570 a          220 c          208 g          507 t
ORIGIN      
        1 tttttgttga actgaatttg aaatttcaaa aatttgtttc atcttttcct cctttgttaa
       61 aattaatact taatgtatca tatttttagt aaatgtgttt gtaaaattct taaattaaga
      121 aaattattga tataattgta attttaagta acaaaaagga agttgatgtt aaaagaactc
      181 ttagagatta aaaaagaaat ggaacctgtt atccacgaag ccaatgtgaa attaaatgtc
      241 ctagctcgtg aagtcatagt ccgaaaaaaa gaatacgaaa tttatgggcc tatggtagat
      301 cgtgtttatc ttgataatgc catttatgtt aaagttatgt caagtggacg cgatgtaaaa
      361 acagacaatg tgactataaa aaatggtttt tatatggttt ttgttgcccc tgaaaaagaa
      421 agtacaaaag atatcaaaaa taaactcaaa gtagcttatg aaggacttga taacaaattt
      481 atcgctacac ttatacgatc ttgccaacgc tttaaagaga tcataaacaa aacccaagct
      541 acacttgcta aagcttctaa aatgaatgtg gtagtaaaaa cgaatttagg tgaagcaagt
      601 gctgctctaa aatttaacat cactatagaa tatactaaag agaatcaaaa actcactcgt
      661 gaaaattcaa aatcagcagg aagtttcaga gatactaaaa cttatatcaa tcttgtagta
      721 gaaaaaaata cagattctca aatttgtgaa aaactacttg atgatgttga aaaatacttt
      781 atcggtggag gttgatttca ttaatgcaag ttataaaaac ttgcattaga ttaaaattta
      841 taattatatc ctaaatatac accataattt gtttgtttag gatcgtaaaa gtttgaaccc
      901 actttatttt gataaaaatt tctagaatta taatgaattt gctctgcttt aaagcctaat
      961 tctatttcat tatgtggtgt caaatcatat aaagcaccta ttttcgctcc ataaaaataa
     1021 ccgtcaaaat tttgcgacaa agataaaaag cttgttttta aggtaagatc tgttcttgca
     1081 tatcctccat acacacctaa aacagctctg gttttttcaa aaagcttagg agtaaaatca
     1141 taacctgtta aaaatttatg tgtagcaaaa tcaccttcga tttgaatttt aggagttttg
     1201 ataaaatcac taaattcatc agaataatta taaccagcat aaattctatg attttcattt
     1261 aaacgatatc caagttttag accaaacgat ggtatattac ctgaaatatc tccattaaaa
     1321 ttttgctttg tattcttatg ttttaactca ctttttactt gagcatgcat ccaagctgca
     1381 tcagcaccta taaaaaacca gaattctcat ctgctaaagc caaatttgaa aacaaagtag
     1441 cacttgcgat aatgcttaat aattttttat tcataaccta actccttata ataaaattcg
     1501 atcta
//
LOCUS       DAPOLW010000200         1474 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.200, whole genome shotgun sequence.
ACCESSION   DAPOLW010000200 DAPOLW010000000
VERSION     DAPOLW010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1474)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1474)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1474
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.200"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..>1474
                     /locus_tag="ROE18_001757"
     CDS             <1..>1474
                     /locus_tag="ROE18_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HDX3651908.1"
                     /translation="GELDFKAENLNVLEVKDKIEDRVIGKAYLAGEKEIKQALEVAKN
                     SKFTQKSHDEIYQILAKSAKLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFIEFY
                     PHSLEELKKQNPKVTFTPKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLST
                     LTGYMLCKCFWDSGIPKDALIFLPSKGSDISKYLLIDEAIKFSILTGGEDTAYAMLKA
                     NPTLLLSAETGGKNATIVSKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYHD
                     EEFKKTLVDAASSMAVGNPFEFKNKLGTLADKPSSKVQKALDELQPYEEWALKPKFLE
                     DNPYLMTPGIKYGTKKGDFTHMNELFVPILSVMKAKDLKEAIDIVNSTGYGLTAGFES
                     LDEREWEYFHTHIEAGNIYINKPTTGAIVLRQPFGGIKKSAIGLGRKVGIYNYITQFL
                     EIKQEDFDDHLIEDKFSKKLVQIDLKEAQDFINNLIKMSQS"
BASE COUNT          530 a          196 c          286 g          462 t
ORIGIN      
        1 aggcgaactt gattttaaag cagaaaattt aaatgtttta gaagttaaag ataagatcga
       61 agatagagtt ataggaaagg cttatttagc aggagaaaaa gaaatcaaac aagctttaga
      121 agtagctaaa aattccaaat ttacacaaaa aagtcatgat gaaatttatc aaattttagc
      181 caaaagtgca aaactgatga gagaaagaag aggggatttg ataggtttgg cagctttaga
      241 agtgggcaaa acctttttag agatcgatcc tgaagtaagc gaggctattg attttataga
      301 gttttatccg cactctttag aagagcttaa aaaacaaaat ccaaaagtta cattcacacc
      361 taaaggtata ggggttacca tagctccttg gaattttcct ataggaattt cagtaggtac
      421 tatagctgca ccactagccg caggtaatgt ggtgatttac aaaccttctt cactttcaac
      481 tctaacaggt tatatgcttt gtaagtgttt ttgggattcg ggtattccaa aagatgcttt
      541 gattttctta ccttcaaaag gaagtgatat ttctaaatat ttacttattg atgaagcgat
      601 taaattttca attcttacag gaggagagga tactgcttat gccatgttaa aagctaatcc
      661 aaccttgctt ttaagtgctg aaactggcgg aaagaatgcg actatagttt ctaaatttgc
      721 tgatcgtgat agtgcgatta aaaatatcat tcattctgct tttagcaata gcggtcaaaa
      781 atgttcagct acttctttgc tagtcttaga agaagaggtt tatcatgatg aagaatttaa
      841 aaagacttta gtggatgctg cgagttctat ggcagtgggc aatccttttg aatttaaaaa
      901 taaattaggt actttagctg ataagccaag ttctaaagtt caaaaggcct tagatgaatt
      961 acaaccttat gaagaatggg cattaaaacc taagttttta gaggataatc cttatttgat
     1021 gactccaggc ataaaatatg gcactaaaaa gggtgatttt actcatatga atgaactttt
     1081 tgtaccgatt ttaagtgtga tgaaggctaa agacttaaaa gaagctattg atatagtaaa
     1141 ttccacaggt tatggtttaa ctgcaggttt tgaaagctta gatgaaagag aatgggagta
     1201 ttttcacact cacatagaag caggaaatat ttatatcaat aaaccaacca caggggctat
     1261 agtgctgcgt caaccttttg gtgggattaa aaaatcagct ataggtttgg gtagaaaagt
     1321 gggaatttat aattatatca ctcaattttt agagattaag caagaagatt ttgatgatca
     1381 tttaattgaa gataaatttt caaaaaaatt agtacaaata gatttaaaag aagcacaaga
     1441 ttttataaac aatttaatta aaatgtctca atct
//
LOCUS       DAPOLW010000201         1425 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.201, whole genome shotgun sequence.
ACCESSION   DAPOLW010000201 DAPOLW010000000
VERSION     DAPOLW010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1425)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1425)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1425
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.201"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(213..713)
                     /locus_tag="ROE18_001758"
     CDS             complement(213..713)
                     /locus_tag="ROE18_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651909.1"
                     /translation="MKSDLDIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYEGVLAYIQDKRDEIKIILSELSTAITMGETMDNAGIYNSTMD
                     FKNLFK"
     gene            complement(769..1368)
                     /locus_tag="ROE18_001759"
     CDS             complement(769..1368)
                     /locus_tag="ROE18_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDX3651910.1"
                     /translation="MLKQLFCILTFIFMLCGCSLRHETINKNENIILKDEGIDSNIFF
                     KKTGKILKIRNANAPLYLNSRAIVYIDNGFSNKYAHYFWGDLPSNLYSFLILSKFEQS
                     NIFTTLLSSTSSLSADYSLESRINSFEQILNNNENYAQISISVNFINLENNQIIAHKI
                     FNTKEKIEKKDIRSTYNAFQKALNKIGNEIVFWVNSNLS"
BASE COUNT          476 a          192 c          194 g          563 t
ORIGIN      
        1 taaaacataa atatggttta gataatttaa taaaaattgt taaattatct aaatatttat
       61 tttagtttaa agagatcttt taagatctcg tttgggttag gctatttccc tccccctttt
      121 tattcgtagc ctaactctct tttagagttt ggaaaatctc tttaagctaa aatatattat
      181 atttgcttaa agagaacaaa cgattactat tcttatttaa ataaattttt aaaatccatt
      241 gtagagttat aaattccagc attatccata gtttcgccca tggtaattgc ggttgataat
      301 tctgatagaa tgatttttat ttcatctctt ttatcttgta tataggccaa tacaccttcg
      361 taattacttg tttgaagaat taaaagtgga ttagcaattt caaattcaaa aagtttttta
      421 ccaacataaa cattgaaaat atttccaaaa agagctgttc ccatgaaaga gcagttttgt
      481 ataagttgtg acgctgtggc atcaagagtt cttttttgca tatcatctga attttcatct
      541 attctttcta gaatgctttt ttctattttt tttaaagaca tatcaagcac ttgaagtgct
      601 cctataaaat catttgcatc attgatttga gagcaaattt gatttgcttt aaattcattc
      661 acgccctgaa tttcacctaa gtgtttttta aatatatcta aatcactttt cattgtttac
      721 ctttcaaaaa tattgctaaa tatttaaaaa gcaaaaagtg ttcctaaatt aggataagtt
      781 agaatttacc caaaaaacaa tctcattgcc aattttattc aaggcttttt gaaaagcatt
      841 ataggtagag cggatatctt ttttttctat tttttctttg gtattgaaaa ttttatgagc
      901 tattatttga ttgttttcaa gatttatgaa atttacgctt atagaaattt gagcgtagtt
      961 ttcattgtta ttaagaattt gctcaaaaga gttaatcctg ctttcaagag aataatccgc
     1021 acttaaagag cttgttgaag aaagtaaggt tgtaaaaata ttgctttgtt caaattttga
     1081 taaaattaaa aaagaataaa gattgcttgg taaatctccc cagaaataat gtgcgtattt
     1141 gttgctaaaa ccattatcta tataaacaat agctcttgag tttaaataca aaggtgcatt
     1201 tgcattgcga attttaagaa ttttaccagt ttttttaaaa aaaatatttg agtctattcc
     1261 ttcgtctttt aatatgatat tttcattttt attgatggtt tcgtgtctta aagagcatcc
     1321 gcataacata aaaataaaag tcaaaataca gaataattgc tttagcatta tttttctcct
     1381 ggtccaagtt taggtttagt ttctttaaaa atcaaatcag caggg
//
LOCUS       DAPOLW010000202         1415 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.202, whole genome shotgun sequence.
ACCESSION   DAPOLW010000202 DAPOLW010000000
VERSION     DAPOLW010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1415)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1415)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1415
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.202"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..>1415)
                     /locus_tag="ROE18_001760"
     CDS             complement(<1..>1415)
                     /locus_tag="ROE18_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HDX3651911.1"
                     /translation="SIIYHDYPILKILALMLIFGVFVFFLNLKILNLKLKPVNLRLFP
                     LIALNLILIIVYVIALRGPFKHVAINVQNYSFSEYSVVNDTMLNPIMAFSWALKQYKE
                     EAALKVITPLKAQELKEKLFDYLHQSPINLKAEKNHPSVFVNLMESFGLNLADFTNTE
                     HNFLGSLDKHFKQDFLFKRFLSSSNGTIPSFANLFFVSPFSNISTSKFQKTYLDLTPI
                     AVYKKAGYKVIFVSAGNGSWQNIKNYLSILGVDEIIDENILMKEYNGAKDSENGYGIA
                     DEFLYKKVYDLLQKNPHNTLIIALTISNHPPYKIPQNDLPKLQNIPQTLLNMLPYEKD
                     KQDNIIKAYTYANNEFGKFLDKVKQSPFKNSVIIAATGDHRVREMSMDLNSQKAFAYS
                     VPFYLYIPKDLQDNIYYDKDRVGSHKDIFPTLYALSLNNVKYLSVGGRNMLARPNDEK
                     LEFGINDAVWIDKKGIYSGGK"
BASE COUNT          512 a          221 c          164 g          518 t
ORIGIN      
        1 ctttaccgcc actataaata ccttttttat caatccatac agcatcgttg atcccaaatt
       61 ctaatttctc atcatttggt cttgctaaca tatttcttcc gcctacgctt aaatacttaa
      121 cattatttaa acttaaagca taaagagttg gaaaaatatc tttatgagat cctacacgat
      181 ctttatcata ataaatatta tcttgcaaat ccttaggaat ataaagataa aaaggtacac
      241 tataagcaaa agctttttgg gaatttaaat ccatactcat ttcgcgtact ctatgatctc
      301 cagttgctgc tataataaca ctattcttaa atggactttg ttttacttta tctagaaatt
      361 ttccaaattc attatttgca taagtataag ctttgataat attatcttgt ttatcttttt
      421 cataaggaag catattaagc aaagtttgtg gaatgttttg taattttggc aaatcatttt
      481 gtggaatttt ataaggtgga tgattggata tggtaagagc aattataagg gtgttgtgtg
      541 gatttttttg aagcaagtca taaacttttt tatataaaaa ctcatcagct atcccataac
      601 cattttcact atcttttgct ccattatact ctttcattaa aatattttca tctataatct
      661 catctactcc caaaatactg agataatttt taatattttg ccaagatcca ttacctgcac
      721 ttacaaaaat caccttatat cctgctttct tataaacagc aataggtgtt aaatccaaat
      781 aagttttctg aaatttactt gtagaaatat tagaaaatgg acttacaaaa aataagtttg
      841 caaaacttgg tatagttcca ttactagaac tcaaaaagcg tttgaataaa aaatcttgct
      901 taaaatgttt atctaatgaa cctaaaaaat tatgttctgt atttgtaaaa tcagccaaat
      961 taagcccaaa actttccatt aagttaacaa atacactagg atgattcttt tcagctttta
     1021 gatttatagg actttgatgc aaataatcaa aaagtttttc tttaagttct tgtgctttca
     1081 aaggtgtgat aaccttcaaa gccgcttctt ctttatattg ttttaaagcc caagaaaatg
     1141 ccataattgg atttaacatt gtatcattta caacactata ctcactaaaa gaataatttt
     1201 gtacatttat agccacatgc ttaaaggggc cccttaaggc tataacataa acaataatta
     1261 atattaaatt taaagctatc aagggaaata atcttaaatt aacaggtttt agctttaaat
     1321 ttaatatttt caaatttaaa aaaaatacaa aaactccaaa aatcaacatt aaagctaaaa
     1381 tttttaaaat tggataatca tgataaataa tactt
//
LOCUS       DAPOLW010000203         1391 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.203, whole genome shotgun sequence.
ACCESSION   DAPOLW010000203 DAPOLW010000000
VERSION     DAPOLW010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1391)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1391)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1391
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.203"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            75..>1391
                     /locus_tag="ROE18_001761"
     CDS             75..>1391
                     /locus_tag="ROE18_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HDX3651912.1"
                     /translation="MQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHAS
                     YALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILGCDCLPTGVVPVTFKPTFLR
                     YAKEYFLRVEFEDRSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTP
                     GLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLNTEELDNVLNYAKSVFLKYFDELIAISCKEAKDEQSYEKSNFQSLLDFLTQLDTT
                     ALKEKFVKRKILNLCEILEDENQLFVGIFDRLLNQFQSYEKHLLLAYENFLKEIEILN
                     HQILEQLKSISERISSEIFASVKEKDAYFYKESKGFLKKDLYTRYDYKVPYISSDDAF
                     LAMFYNSDVMSKEFKKIKNELYKSFEEIKMKLKDFINILEREILLFK"
BASE COUNT          542 a          137 c          228 g          484 t
ORIGIN      
        1 taatatttta aattcttttg aagaaaattt agaaaaaatt gaaaaattaa aacaacttga
       61 aatggggctt ttaaatgcag attaatcttt taaatgattt tataaaagcc tatgaaaata
      121 cttatagtgt gagttttgat gatagtttta aagggcgtat tcaagagctt tgcaaggaac
      181 ttaatgagcc ttttatgcat gcaagttatg ctttagaaaa tgaattaaaa gagcttgtat
      241 tttctttgga taagaatgtt aatatcgcta ttatagggca gttttcaagt ggtaaatcaa
      301 gtttactaaa tttgatcttg gggtgtgatt gtttgcctac gggtgttgtt cctgttactt
      361 ttaaacctac ttttttacgc tatgcaaaag aatatttttt aagagtagaa tttgaagata
      421 gaagtgatat tatcacaaat atagaaaaat tagcctttta tacggatcaa agaaatgaag
      481 taaaacaagc aaaaagtttg catatttttg cacctattcc tttacttgaa aaaatcactc
      541 ttgtagatac tccgggttta aatgcaaatg aaaatgatac tttaacaact cttgatgagc
      601 ttaaaaatat tcatggagcg atttggttaa gtttgattga taatgcaggc aaaaaaagtg
      661 aagaagatgc cataaaagca aatttagaac ttttaggaga aaatagcatt tgtgtattaa
      721 atcaaaaaga taaattaaac acagaagagc tagataatgt tttaaattat gcaaaaagtg
      781 tatttttaaa atattttgat gagcttattg ccatttcttg caaagaagct aaagatgagc
      841 aaagctatga aaaatctaat tttcaatctt tgcttgattt tttaactcag ctagatacaa
      901 cagctttaaa agaaaaattt gttaaaagaa aaattttaaa tttatgcgaa attttagaag
      961 atgaaaacca actttttgta ggtatttttg atcgtttatt aaatcaattt caaagttatg
     1021 aaaagcattt acttttagcg tatgaaaatt ttttaaaaga gattgaaatt ttaaatcatc
     1081 agattttaga acagcttaaa agcattagcg aaagaatttc tagtgaaatt tttgcaagtg
     1141 ttaaggaaaa agatgcttat ttttacaaag aaagcaaagg atttttaaag aaagatttat
     1201 acacaagata tgattataaa gtgccttata tttcaagcga cgatgctttt ttggcgatgt
     1261 tttacaatag tgatgtaatg agtaaagagt ttaaaaaaat caaaaatgaa ctttataaat
     1321 cttttgaaga aatcaagatg aaattaaaag attttataaa catacttgag agagaaattt
     1381 tgctttttaa a
//
LOCUS       DAPOLW010000204         1380 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.204, whole genome shotgun sequence.
ACCESSION   DAPOLW010000204 DAPOLW010000000
VERSION     DAPOLW010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1380)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1380)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1380
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.204"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(6..1334)
                     /locus_tag="ROE18_001762"
     CDS             complement(6..1334)
                     /locus_tag="ROE18_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HDX3651913.1"
                     /translation="MSSIFSTLSPFRLFVKCAVPNVISMAFISFYYIVDGIFVGKYLG
                     SDALAALALIIPFIMMSFALADMIAIGSAVQISMHLGLGKKNLARKIFSSSMLIIFII
                     SCFIGILEYFLGPVLIDCLNVSDEIKTMTKECMFVFALFAPFTMLSFALDNYLRICGK
                     TAYSMVMNVIIALSNIVLDYIFIVELGWGLFSAALATCLGLVLGGIFGIFPFLFQNLE
                     LKISSLYMNLKIFKNILYNGSSEFFGNISGSLYSIFANFVLLKISDTQAVAAFSIVLY
                     IDSFIIMLIIAMGDAMQPALSYNYAKKDFSRIKAIVKVVFFAGGFLSLFSIVLILIFG
                     ENLITLFTKENNQEFKTFAYTALMLFAFNYFFAWFNVLSGSFLTAFNKASFSLVLSLA
                     QNLFIPLFFLLFLSCFMGLNGVWLSPFFAEFCVLILAWIFLKRIFKDLSL"
BASE COUNT          613 a          244 c          151 g          372 t
ORIGIN      
        1 atctcctata aagatagatc tttaaaaatt cttttaagaa aaatccaagc taaaatcaaa
       61 acacaaaatt cagcaaaaaa tggacttagc catactccat ttaaacccat aaaacaagat
      121 aaaaacaaaa gaaaaaacaa aggtataaat aaattttgcg ccaaacttaa aaccaaagaa
      181 aagcttgcct tattaaaagc tgtcaaaaaa gaaccactta gaacattaaa ccatgcaaaa
      241 aaataattaa aagcaaaaag catcaaagct gtataagcaa aagttttaaa ttcttgattg
      301 ttttcttttg taaaaagcgt gattaaattt tctccaaata tcaatataag cactatagag
      361 aataaagata aaaatccccc tgcaaaaaat accactttta caatagcttt gattcttgaa
      421 aaatcttttt tagcatagtt gtaactaagc gcaggctgca ttgcatcacc catagcaata
      481 ataagcatta taataaaact atcaatatat aaaactatag aaaaggctgc cacggcttga
      541 gtatcagaaa tttttaataa aacaaaattt gcaaaaatac tatataaaga tcctgaaata
      601 ttgccaaaaa actcactgct tccgttataa agaatatttt taaaaatttt taaattcatg
      661 tataggcttg aaattttaag ctctaaattt tgaaacaaga aaggaaaaat tccaaaaata
      721 ccacctaaaa caagccccaa acaagttgca agagcagctg aaaataagcc ccaacccaac
      781 tcgactataa aaatataatc aagcactata ttgcttaatg ctataattac attcattacc
      841 atactataag cagtttttcc gcaaattctt aaataattat ccaaagcaaa agaaagcata
      901 gtaaagggtg caaacaaagc aaaaacaaac atacattctt tagtcatcgt tttaatctca
      961 tcgctaacat ttaaacaatc aatcaaaaca ggtcctaaaa aatactccaa aattccgata
     1021 aaacaagaga ttataaagat aatcaacata cttgagctaa atatctttct agctaaattc
     1081 ttcttgccta aacctaaatg catagaaatt tgcactgctg atcctatggc tatcatatca
     1141 gccaaagcaa aagacatcat gataaaggga ataatcaagg ctagtgccgc taaagcatca
     1201 cttcctagat attttccaac aaaaattcca tcaactatat aataaaaaga aataaaagcc
     1261 atacttataa catttggcac ggcacatttt acaaaaagcc taaaagggct taaggtgcta
     1321 aaaatacttg acataataat ccttaaaata tttaaaatta aaaatatttt aaaccgctaa
//
LOCUS       DAPOLW010000205         1378 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.205, whole genome shotgun sequence.
ACCESSION   DAPOLW010000205 DAPOLW010000000
VERSION     DAPOLW010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1378)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1378)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1378
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.205"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(80..1330)
                     /gene="mtaB"
                     /locus_tag="ROE18_001763"
     CDS             complement(80..1330)
                     /gene="mtaB"
                     /locus_tag="ROE18_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HDX3651914.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTSLGKLLQKMGQILGIKRIRL
                     GSLEPAQLDESFLEILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNTLKSIVEKNNYEFRKKNQVSLEVLVENQKDGFFEGYDQFFNKIKIKSDKD
                     IAKEWIVISEYEAQEKSNFANLKG"
BASE COUNT          436 a          266 c          145 g          531 t
ORIGIN      
        1 catttttaaa atataaaatt cccaaaagca tacataaaac cataaaagat gctaaaatta
       61 tctttttatt tttcattatc tagcctttta aatttgcaaa gttagacttt tcttgtgctt
      121 catattcaga tataacgatc cattctttag ctatatcttt atcactttta attttaatct
      181 tattaaaaaa ctgatcataa ccctcaaaaa aaccatcttt ttgattttct accaaaactt
      241 caagtgaaac ttgatttttt ttcctaaatt cataattatt tttttctact atggatttta
      301 aagtgtttag tctttcttta gctaaagttc catttatcac atctttcatg gtagcagaat
      361 gcgtgttgtt tctagggcta aaaataaaag catggatatg agtgagtgga aattctttaa
      421 aatttcttaa agcttcttgc catagctctt cactctcgcc tggatgagct actataaaat
      481 ccgtccctaa agcatatcct ttgcttgcta tagtattaaa aagctttaaa tcattatccg
      541 tatgtgatct tcttctcatt atacgaagca ttttttcact tgtatgttgc aatgcaatat
      601 gtaaatgcct ttcaagccaa gcttcatcta agatttctaa aaaactttca tcaagttgtg
      661 caggttctaa actacctagc cttatgcgtt ttatacctaa aatttgtccc attttttgca
      721 aaagcttgcc taaacttgtg ccatttttaa gcccatatga acctatatta gtccctgtta
      781 aaacaatttc actataacca ttagctccta aaatttcaac ctgttttaaa agagcttttt
      841 catccacgct tcttgatttt cccctcacgc taggaataat acaataagaa caagcaaaat
      901 cacaaccttc ttgaattttc acaaaagctt tggtatgatt ttcatactca caaactatat
      961 ctttatcaat aaaatttaaa tttccaagtt cataaaaact tgtctttgct cctaaaaatt
     1021 cattgatttt atctttattt gacgctccaa gcactccaaa aacttgcttt ttatctaaaa
     1081 gctccttacc tttgcttaca gcaccacaac ctgtaagtat aactttaatg cctttttttt
     1141 gcatggtatt tacataagac tttatcccgc tatcagctcc atttgtaacc gtgcaagaat
     1201 ttacaacgat aatttgtgct ttattctcat catttataat ctcataatct tttacataac
     1261 tttttaaaag ctctgtatca taaatatttg tgcgacaccc aaaggtttta aaaaaaactt
     1321 tttctttcaa tctttattcc ttgcatgaaa atacatattt tcatgatgtt gttcaaaa
//
LOCUS       DAPOLW010000206         1347 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.206, whole genome shotgun sequence.
ACCESSION   DAPOLW010000206 DAPOLW010000000
VERSION     DAPOLW010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1347
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.206"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            564..614
                     /locus_tag="ROE18_001764"
     CDS             564..614
                     /locus_tag="ROE18_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651915.1"
                     /translation="MKAYIHVYIFILKKIL"
     gene            625..918
                     /locus_tag="ROE18_001765"
     CDS             625..918
                     /locus_tag="ROE18_001765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651916.1"
                     /translation="MTFEISNDDEEDIENEKYKECLKLFKDVKEDNVRKYQNHYYCDK
                     LINNEKLEGEYAFIYWLIENQNSKKDFIQILNDFFIKKPIQEAYKGINDILNS"
     gene            979..>1347
                     /locus_tag="ROE18_001766"
     CDS             979..>1347
                     /locus_tag="ROE18_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HDX3651917.1"
                     /translation="MHFTLLNEKDFFNPYYRKKQIMQNEFDIFNKALMQYLERLESSQ
                     SENEDYLVANALSPFLTMLNFKTHIKTKQKGKSEIDLSISKDEFSKDLEVLIEAKKPN
                     SKEFITHTKVNSKALHETILY"
BASE COUNT          601 a          128 c          181 g          437 t
ORIGIN      
        1 tcctagtgat gatagtttgg aaaattttat aataaagaca aatttgatta aagataaaaa
       61 tgaaaataat gttagctatt atttgaagat ggattatata tggattaagg aatggattga
      121 tgagtgtata aaaatatatg aagaaaaatc aaccaaagat caaaaattta ttcttgatat
      181 acaaaacatt atttttactc taaatcaata caaaagtatt ttacaatggt atatgacaga
      241 tgagtatact caaagagatg atgtactaga atttattttt caagacaata taaaaatgca
      301 aaatttaaaa aatgcgatga ttttatatag atataacaaa aacaaatcag agcttaaaaa
      361 tttaaatgaa gaaaactata agaaagctaa agatattatc cagcataaat ggagcaacat
      421 ctgcgaatat ataatagaag aattttttga tagttttgaa cacaaggaaa ttaaaatagg
      481 tgatataact tttatcggca ataaaataga agaaaatcgt gttaatcatg gtgtatttat
      541 attttatcct attgattata agaatgaaag catatatcca tgtctatata tttattttaa
      601 aaaaaatact atgatattat tggtttgaca tttgaaattt caaatgatga tgaagaagat
      661 atagaaaatg aaaaatataa agaatgttta aaattattta aagatgtaaa agaagacaat
      721 gttagaaaat atcaaaatca ctattattgt gataaattaa taaacaatga aaaattagaa
      781 ggagaatacg cttttattta ttggttgatt gaaaatcaaa attctaaaaa agattttatt
      841 caaattttaa atgatttttt tattaaaaaa cctatacagg aagcatataa aggtattaat
      901 gatatattaa attcttaaaa aattttatat aaaagtaaaa tttgataaaa tacaaaatat
      961 tttttataaa ggttaaaaat gcatttcact ttgctaaatg aaaaagattt tttcaaccca
     1021 tactaccgca aaaagcaaat catgcaaaat gaatttgata tatttaacaa ggctttaatg
     1081 cagtatttag aaagacttga aagttcgcaa agtgaaaatg aagattatct tgtagctaat
     1141 gcacttagtc catttttaac catgttaaat ttcaaaaccc acatcaaaac gaagcaaaaa
     1201 ggcaaaagtg agattgactt atccatctct aaagatgagt ttagtaaaga cttagaagtt
     1261 cttattgagg ctaaaaagcc aaattcaaaa gaatttatca ctcatacaaa ggtaaattct
     1321 aaagccttac acgagactat tttatat
//
LOCUS       DAPOLW010000207         1305 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.207, whole genome shotgun sequence.
ACCESSION   DAPOLW010000207 DAPOLW010000000
VERSION     DAPOLW010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1305)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1305)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1305
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.207"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..1034
                     /locus_tag="ROE18_001767"
     CDS             <1..1034
                     /locus_tag="ROE18_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDX3651918.1"
                     /translation="DEIVAECFNNDFKDFDKDIIFLVASLVHKKTISYLEKNQRKYIL
                     IIKGQPFARCLGLDDYGYINAGMSVSHMAYELAENLGHNNIILIGQDLAYAKDGQTHS
                     QGFIHANLHNGDYERDLDRFSTTAYGGNGKVQSSEIWTLFRQIFENFIAFSKSKTYNC
                     TEGGARIESAIEKPFKELCENLLENKKDKKFKKLQVLNTKEQVKLGLKIYQKIKKNMN
                     LSLNFKKECKKVQKQIHNLTHGKNKLSLEQINQNIDKIKEKLSNKKYLFLQEILGPTL
                     HHEQSILTPLYLKDIKDESDKQNKLFAWVYAHEALIENIIELLEVQDKRLKIAILPLQ
                     DFLEKKKAL"
     gene            complement(1065..>1305)
                     /locus_tag="ROE18_001768"
     CDS             complement(1065..>1305)
                     /locus_tag="ROE18_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDX3651919.1"
                     /translation="TNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDFA
                     SESANFSKYNILAQSGSYAMSQANAVQQNVLKLLQ"
BASE COUNT          510 a          186 c          205 g          404 t
ORIGIN      
        1 gcgatgaaat agtagctgaa tgttttaata atgattttaa agattttgat aaagacatca
       61 tttttctagt agcttctttg gtgcataaaa aaaccatttc ttatcttgaa aaaaatcaaa
      121 gaaaatacat tttaatcata aaaggccagc cttttgcgag atgcttgggg ctagacgatt
      181 atggatatat taacgcaggc atgagtgtat ctcatatggc ttatgaactg gctgaaaatt
      241 taggacataa caacatcatt ctcataggtc aggatttagc ttatgccaaa gatgggcaaa
      301 cacattctca aggtttcatc catgctaatt tacacaatgg agactatgaa agggacttag
      361 atagatttag cactacagct tatggaggaa atggaaaagt tcaaagttct gaaatttgga
      421 cactttttag acaaattttt gaaaatttca ttgcttttag caaaagtaaa acttataatt
      481 gcactgaagg aggtgctagg atagaaagcg ctatagaaaa accttttaaa gaactttgcg
      541 aaaatttact cgaaaataaa aaagataaaa aatttaaaaa attacaagtt ttaaatacta
      601 aagaacaagt aaaactcgga ttaaaaatct atcaaaaaat caaaaaaaat atgaatttat
      661 ctttgaattt taaaaaagag tgtaaaaaag ttcaaaaaca aattcacaat cttacccatg
      721 gaaaaaacaa gctctctctt gaacaaataa accagaatat agacaaaatc aaagaaaaac
      781 tttcaaataa aaaatatctc tttttgcaag aaattttagg ccctacttta catcacgaac
      841 aaagtatatt aacgccttta tatcttaaag atatcaaaga tgaatctgat aaacaaaata
      901 aactttttgc ttgggtttat gcacacgaag ctttgataga aaatatcata gagcttttag
      961 aagtccaaga taaaagactt aagattgcga ttttgccctt gcaagacttt ttagaaaaga
     1021 aaaaagcact ttaaaatctt agatgcaaaa agcatctaag aaatctattg aagaagtttt
     1081 aaaacatttt gctgcactgc attagcctga ctcatagcat aagaacctga ctgtgcaagg
     1141 atgttatatt tagaaaaatt tgcactttca cttgcaaagt ctacatctct tatggttgat
     1201 tctgctgctt taacatttac ttgagttacg gtaatgttgt ttatagtaac ttgaagttga
     1261 ttttgtactg aaccaatgtc agctctgatt tgatcaagat ttgtt
//
LOCUS       DAPOLW010000208         1302 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.208, whole genome shotgun sequence.
ACCESSION   DAPOLW010000208 DAPOLW010000000
VERSION     DAPOLW010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1302
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.208"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..>1302)
                     /locus_tag="ROE18_001769"
     CDS             complement(<1..>1302)
                     /locus_tag="ROE18_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDX3651920.1"
                     /translation="LFLKNTQALFEVDEFLACTLRSLKYLTFALIQDENGINFKKDDI
                     FLYENPNKELLENLTLFKTEYNKYPVLFFYGFGNGMFYKTLCKNKQHKHIIIFEDNLE
                     ILTLAFHLFDFSEELKKEQLILFYTPNINTAQLTTLFTYEIIQKSVKIFNLFIHNDFY
                     QQFYSTQIQNINTQLIEIIRFIVLNKGNDPHDSLVGIKHTLDNLPKMLNHGIFQEFLK
                     ERRAKVENAIIVSTGPSLIKQLPLLKKYANKATIFCADSAYVILGKYGIKPDYVCMLE
                     RDDIVSKCFDNDFGDFNKGILFILASVVHKEVLDFLEKDQRTYMLVHRPLNFAASLKL
                     DEYGYLGVGHSVSNMIYELTGALRFENIIFIGQDLAYGEDGSSHPKEHIHGSQGEEIR
                     GEKYTLAYGGKGKVRTQLTWNLFRQAFEKDIFWAKEKLNITT"
BASE COUNT          446 a          190 c          179 g          487 t
ORIGIN      
        1 ggtggtgata ttgagttttt cttttgccca aaatatatct ttttcaaaag cttgacgaaa
       61 taaattccaa gtaagttgtg ttcttacttt gccttttccc ccataagcta gtgtatattt
      121 ttctcctctg atttcttcac cttgacttcc atgtatatgc tctttaggat gtgaacttcc
      181 atcctcgcca taagctaaat cctgtcctat aaaaatgata ttttcaaatc ttaaagctcc
      241 tgttagttca tagatcatat ttgaaacact gtgtcctact ccaagatatc catattcatc
      301 aagttttaaa ctagccgcaa aatttaaagg gcgatgtaca agcatataag ttctttgatc
      361 tttttctaaa aaatctaata cttctttgtg aaccacagaa gcaagtatga aaagtatgcc
      421 tttgttaaaa tcgccaaaat cattatcaaa acatttagaa actatatcat cacgttctag
      481 catgcaaaca taatcaggct ttataccgta ttttccaagg ataacataag cactatctgc
      541 acaaaaaatc gtagctttat tagcatactt ttttaataaa ggaagttgtt ttataagact
      601 tggtcctgta gaaacaatga tagcattttc aaccttagct cttctttctt tgagaaattc
      661 ttgaaaaatt ccatgattta acattttagg gagattatct agggtatgtt tgattccaac
      721 taaagaatca tgtggatcat tacctttgtt taaaacgata aatcgtatta tttctatcag
      781 ttgagtattt atattttgta tttgagtgct ataaaattgt tgataaaaat cattatgaat
      841 aaaaagatta aaaattttta cacttttttg aatgatttca taagtaaaaa gtgtggtgag
      901 ttgtgctgta ttaatatttg gagtataaaa aagtattagt tgttcttttt ttaattcttc
      961 gctaaaatca aataaatgaa aagctaaagt taaaatttca agattgtctt caaaaatgat
     1021 aatgtgttta tgttgtttgt ttttacataa agttttataa aacattccat ttccaaagcc
     1081 ataaaaaaac aaaacaggat atttgttata ttcggtttta aacagagtaa ggttttctaa
     1141 aagctcttta ttgggatttt cataaagaaa aatatcatct tttttaaaat ttattccatt
     1201 ttcatcttgg ataagtgcaa aagttaagta tttaagtgat cttagtgtac aagctaaaaa
     1261 ctcatcgacc tcaaacaaag cttgagtatt ttttaaaaaa ag
//
LOCUS       DAPOLW010000209         1223 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.209, whole genome shotgun sequence.
ACCESSION   DAPOLW010000209 DAPOLW010000000
VERSION     DAPOLW010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1223)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1223)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1223
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.209"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..>1223
                     /locus_tag="ROE18_001770"
     CDS             <1..>1223
                     /locus_tag="ROE18_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HDX3651921.1"
                     /translation="TLEKFQNLEFNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETA
                     NLTVLSYGKSEEAKIYFWDKKEWQNILESSHFNADLKEFIDKLDKSVNIEDFIKDKPL
                     IQNIALCELKNFSSAKNKISALIKKIEIKSHLDFLKNNISIVDTPGLDDVVVQREIVT
                     NEYLRESDFLIHLMNASQSLTQKDADFLVHCLLNSRPSKFLIVLTKADLLSKKDLEEV
                     IVYTKESLKSRLVDLDENLVEKIDFLCVSAKMASDFYKGLAPKESLQKSGMQEFENYL
                     FNELYAGEKSKIALRAYKKELHLELKNILSKYEMQNRLIKENKQGVSEENQKLLLELQ
                     KQNILLKEAQDEISNSIVKLKNIDNGIDNLVLLLAKKLKERLIDEFKYLKNNAQKLNL
                     SRILNIVDITTKDGI"
BASE COUNT          496 a          127 c          204 g          396 t
ORIGIN      
        1 aactttggaa aaatttcaaa atttagagtt taatatagcc atcactggcg tgatgaatgc
       61 aggaaaatca agccttttaa atgctctttt aaaagaagat tttttagggg tttcaaacat
      121 acctgaaaca gctaatttaa cagtattaag ctatggtaag agtgaagaag caaagatata
      181 tttttgggat aaaaaagaat ggcaaaatat acttgaaagt tcgcacttta atgcagattt
      241 aaaagaattt attgacaagc tggataagag tgtaaatata gaggatttta tcaaggataa
      301 acctttaata caaaatatcg cactttgtga acttaaaaat ttcagttcag ctaaaaataa
      361 aatttcagct ttaattaaaa aaatagaaat taaaagtcat ttagattttt taaaaaataa
      421 tatttccata gttgatactc cagggcttga tgatgttgta gttcaaagag aaattgttac
      481 aaatgagtat cttagagaaa gtgatttttt aattcattta atgaatgctt ctcaaagctt
      541 aactcaaaaa gatgcagact ttttagtgca ttgtctttta aattcaaggc cgagtaagtt
      601 tttaattgtt ttaactaaag cggatttgtt aagcaaaaag gatttagaag aagtcattgt
      661 ttataccaaa gaaagcttaa aatcaagact tgtggattta gatgaaaatt tggttgaaaa
      721 gattgatttt ttatgtgtga gtgctaaaat ggcaagtgat ttttataagg gtttagcacc
      781 taaggaaagt ttgcaaaaaa gtggtatgca agaatttgaa aactatcttt ttaacgagct
      841 ttatgcagga gaaaaaagca agattgcctt aagagcttac aaaaaagaat tacatttgga
      901 acttaaaaat attctaagca aatatgaaat gcaaaatcgt cttattaagg agaataaaca
      961 aggtgtaagt gaagaaaatc aaaagctttt acttgaactt caaaagcaaa atatcttatt
     1021 aaaagaagca caagatgaaa tttcaaattc cattgtaaaa cttaaaaata tagataatgg
     1081 tatagataat cttgttttac ttttggctaa aaaattaaaa gaacgcttga tagatgagtt
     1141 taaatattta aaaaataatg cacaaaagct taatctttct cgtattttaa atatagttga
     1201 tattactaca aaagatggga tta
//
LOCUS       DAPOLW010000210         1184 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.210, whole genome shotgun sequence.
ACCESSION   DAPOLW010000210 DAPOLW010000000
VERSION     DAPOLW010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1184)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1184)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1184
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.210"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            50..793
                     /locus_tag="ROE18_001771"
     CDS             50..793
                     /locus_tag="ROE18_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HDX3651922.1"
                     /translation="MTIDLNHNFTSFVLLDEVDFNFSELKSILEDKFNIKIADENFTK
                     EGVIFSYENMLVTLNLINNPIPNHEVEYYANFNFMWKDALEQTKKHKAHLLIAVLSQD
                     QSKLEQAKMFTKIAVLCLDNKHALGFYTGAVVLEPSFYIENAKMLDDNHLPVYNWIYV
                     SVYPSENGVNAYTYGLRNFDKLELEVCDLNIEEKELFFCIYDIVLHILTYDINLKDKD
                     ILKFEDGKEIKFIKSQGISVENESLKIIF"
     gene            857..>1184
                     /locus_tag="ROE18_001772"
     CDS             857..>1184
                     /locus_tag="ROE18_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HDX3651923.1"
                     /translation="MKAKLTLLALLGTTVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGEWKEVDGKYKALPHTILPNVMKKVSATQPNA
                     QILEVDK"
BASE COUNT          443 a          126 c          195 g          420 t
ORIGIN      
        1 tatttatttt tattaggtta taatttataa aaatttaata gggtttaaca tgactataga
       61 tttaaatcac aattttacct cttttgttct tcttgatgaa gttgatttta atttttcgga
      121 gttaaaaagc attttagaag ataaatttaa tataaaaata gctgatgaaa attttaccaa
      181 agagggcgtg attttttcat atgaaaatat gttagttact ctaaatttga ttaacaatcc
      241 tatacctaat cacgaagtag aatactatgc aaattttaat tttatgtgga aagatgcctt
      301 agagcaaact aaaaaacata aagctcatct tcttatagcg gtgctaagtc aagatcaaag
      361 caaattagaa caagctaaaa tgtttacgaa aattgcagtt ttatgtttgg ataataaaca
      421 tgctttaggt ttttatacag gtgcagttgt tttagagccc agtttttata tagaaaatgc
      481 aaaaatgtta gatgataatc acttgccggt atataattgg atatatgtta gtgtttatcc
      541 tagtgaaaat ggagttaatg cttatactta tgggcttaga aattttgata aattagaact
      601 tgaagtttgt gatttaaaca tagaagaaaa agaacttttc ttttgtattt atgatattgt
      661 tttgcatatt ttaacttatg atattaatct aaaagataaa gatattttaa aatttgaaga
      721 tggaaaagaa ataaaattta taaaaagtca aggtataagt gttgagaatg aaagcttgaa
      781 aattattttt taagtttcac attcacttca cagttttgag ttaaactttc gccaaccaag
      841 aaaaaaagga gaaattatga aagcaaaact aactttactt gctttgttgg gtactacggt
      901 gcttttagct aaagatatgg ttgttcctgc tagcgaactt ccaaataatg ccaaagaatt
      961 tatttctaaa aattttaaaa ccgctcaaat tggtttggtg aaaaaagata tagattctta
     1021 tgatgtgatt ttaaatgatg gaactgaaat tgattttatg atcaatggag agtggaaaga
     1081 agttgatgga aaatataagg ctttgccaca tactatctta cctaatgtta tgaaaaaagt
     1141 gagtgcaact caaccaaatg ctcaaattct tgaagtagac aaag
//
LOCUS       DAPOLW010000211         1182 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.211, whole genome shotgun sequence.
ACCESSION   DAPOLW010000211 DAPOLW010000000
VERSION     DAPOLW010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1182)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1182)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1182
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.211"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            385..648
                     /locus_tag="ROE18_001773"
     CDS             385..648
                     /locus_tag="ROE18_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014769654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651924.1"
                     /translation="MLLEGFSNATKEDRNLNFNHLLFAALLVSFALFLFAPQIYIRNQ
                     IYYLSREIATLRTEESVLNEENKDLKRRLENMRFQNQILDYLE"
     gene            complement(636..1127)
                     /locus_tag="ROE18_001774"
     CDS             complement(636..1127)
                     /locus_tag="ROE18_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651925.1"
                     /translation="MKKFKEFSLRFLFKVSEQPVLIRDLLEANALFNDGMLVDPSKLN
                     FNFKILNSYIYFGVFCAVILLPLLLITHYFLTKLDFHISIVSAVMVTACVFIGYDIFK
                     VYTRKIISKKIIQKAWALHFPYFAYEKYSTMAGEFYKEALKEEIPKANLEQYVLDKII
                     HSK"
BASE COUNT          545 a          173 c          129 g          335 t
ORIGIN      
        1 aaaatgaaag aaagaagaaa agaagaaaat aaaaaaacta aaaaaaattt tttatttagc
       61 agaaaaaaag caaacgaaat aaaaaatatc caaaccaaaa cacaaattca aacaaaaagc
      121 aatcaagcta ccactcaaac aaaacaagaa aaaaaggaac ttacaaattc tatagaaaaa
      181 attcaaaaaa cagaaactaa aatacaaaaa cctctaatta tagaaaaaaa actagatgtt
      241 aaaaatcaac ctaatatcaa gaaaagttta gaaaatttac aaaaaaaaat aacaccacaa
      301 gaaaataaac aagaacttcc aaaaccatct aatcaagctc aagaaaaaca acaaaatgat
      361 gaagatgctc aaaaggcaaa aaatatttta ctagaaggct tctctaatgc taccaaagaa
      421 gatagaaacc taaacttcaa tcatcttctt tttgcagctt tacttgttag ttttgcatta
      481 tttttatttg ccccacaaat ttatattaga aatcaaattt attatcttag tagagagatt
      541 gctacattaa gaacagaaga aagtgtttta aacgaggaaa ataaagactt aaaaagaaga
      601 cttgaaaata tgcgattcca aaatcaaatt ttagattatt tagaatgaat aatcttatct
      661 aaaacatact gctctaaatt tgcttttgga atttcttctt ttaaagcttc tttataaaat
      721 tcacccgcca ttgtagagta cttttcataa gcaaaataag gaaagtgtaa agcccaggct
      781 ttttgtatta ttttttttga gattattttg cgagtataaa ctttaaaaat atcatatcct
      841 ataaatacac aagcagtaac cataacagca ctcactatgc ttatatgaaa gtcaagcttt
      901 gttaaaaaat aatgagtaat caaaagcaat ggcaataaaa tcacagcgca aaaaacacca
      961 aaataaatat aagaatttag aattttgaaa ttaaaattta gcttagaagg atctacaagc
     1021 attccatcgt taaaaagtgc atttgcctct aataaatctc ttataagaac aggttgctct
     1081 gatactttaa ataaaaaacg aaggctaaat tctttaaatt ttttcataat ccacgcttta
     1141 ttttttaatt aaaattttat ccaaagaaaa ttaattccaa ct
//
LOCUS       DAPOLW010000212         1165 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.212, whole genome shotgun sequence.
ACCESSION   DAPOLW010000212 DAPOLW010000000
VERSION     DAPOLW010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1165)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1165)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1165
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.212"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            5..937
                     /gene="rsmH"
                     /locus_tag="ROE18_001775"
     CDS             5..937
                     /gene="rsmH"
                     /locus_tag="ROE18_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HDX3651926.1"
                     /translation="MEIPHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHP
                     DLKFIACDQDQQALKFSKKRLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVS
                     SFQLDNNERGFSVNSDFLDMRMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFI
                     AEKICLERSKNPIKSAKELYQIIGKGKQNHRKISKATLAFQAIRIEVNQELKVLKDFL
                     EHLENLKPKNCILAIISFHSLEDRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQII
                     TKKAISASKEELLKNSRSSCAKMRAFYFNNLDNK"
     gene            937..>1165
                     /locus_tag="ROE18_001776"
     CDS             937..>1165
                     /locus_tag="ROE18_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651927.1"
                     /translation="MLEDDFIKERQNIRQKMLKFSRAINQGKPLDDDLRDEISSDDIL
                     RRRFKKKTPNKFLEELDEEYESKHTKKSNIYL"
BASE COUNT          473 a          153 c          176 g          363 t
ORIGIN      
        1 gattttggaa attcctcata tcccagtttt acttaatgaa gttcaagaga tttttaaaaa
       61 tcttaaaaca ggttattttt tagactgcac tttaggattt ggcggacata gtgaagcttt
      121 gcttaaaaat catcctgatc ttaaattcat tgcttgtgat caagatcaac aagctttaaa
      181 attttctaaa aaacgtctta aagattttcg caataggata acttttatgc aaagtaattt
      241 tagtgaagtt ttagaaaaaa tttcacataa agaagaatta agaggtattt tagcagacat
      301 tggagtttct tcatttcagc ttgataataa cgaaagaggt tttagtgtaa attctgactt
      361 tttggatatg agaatgaatc aaaactccaa aatatcagct tatgagatta ttaatactta
      421 tacaaaagag caattaactt ccatttttaa agattatgga gaattacatg atgcacattt
      481 tattgctgaa aaaatttgcc tagaaagaag taaaaatcca atcaaaagcg ccaaagagct
      541 ttatcaaatc ataggaaaag gtaaacaaaa tcatagaaaa atttccaaag ctactttagc
      601 atttcaagcc attagaatag aagtaaatca agaacttaaa gtgcttaaag attttcttga
      661 acatttagaa aatttaaaac caaaaaattg cattttagct atcattagct ttcattcttt
      721 agaagataga atagtaaaac aatttttcaa aaaatggtca aaaaactgca tttgtaatga
      781 aaaaataatg cgttgcgaat gtggaaataa ccatagccta ggacaaataa taactaaaaa
      841 agctataagt gcgagcaagg aagaactttt aaaaaattct cgctctagtt gtgctaaaat
      901 gcgggctttt tattttaata atttggacaa taaataatgc tagaagatga ttttataaaa
      961 gaacgccaaa acatacgcca aaaaatgctg aaattttctc gcgccataaa tcaaggcaaa
     1021 ccgcttgatg atgatttaag agatgaaatt tctagcgatg atattttaag acgtcgtttt
     1081 aaaaaaaaga ctcctaataa attcttagaa gaactcgatg aagagtatga gtcaaaacat
     1141 actaaaaaat caaatatata tttaa
//
LOCUS       DAPOLW010000213         1163 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.213, whole genome shotgun sequence.
ACCESSION   DAPOLW010000213 DAPOLW010000000
VERSION     DAPOLW010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1163)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1163)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1163
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.213"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..187
                     /locus_tag="ROE18_001777"
     CDS             <1..187
                     /locus_tag="ROE18_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDX3651928.1"
                     /translation="ILKAVMYERGLKISLVYKENIVDNASFITAYIKAYHEWLLYFME
                     KLEQRINIIIDSFKELP"
     gene            184..>1163
                     /locus_tag="ROE18_001778"
     CDS             184..>1163
                     /locus_tag="ROE18_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDX3651929.1"
                     /translation="MNLLEKNIQALLSGVNEPLGNKLLNFIQNKTCSRFNIDENLNIF
                     DKTHNVFMYENLEEEINFFYQSILEKTPRYPFICIYGIGNALLIKNLAKHYKHLFVFE
                     SEIELFILALSTIDLSEELCSGKIYLVDIEEERVDIQLLILFDMKDISEYLSLYEMFV
                     NNVYYKKFYEDIWHKADELCEKNIKVVIRNLGSNSDLSFECYSHLLQNIPSMLESIPF
                     QRILSERKNKFENAIVVSAGPSLAKQLPLLKACQDKAVIFCADGALSMLEKEGIVPDY
                     VTNLDFTDLAMKFFQNKENKTSLNILSCATYPNLVHFLDNKSVILRDDPL"
BASE COUNT          424 a          130 c          185 g          424 t
ORIGIN      
        1 tattttaaaa gcagtgatgt atgagcgagg acttaagata agtttagttt ataaagaaaa
       61 tattgtagat aatgctagtt tcatcacagc ttatattaaa gcttaccatg aatggttgct
      121 ttattttatg gaaaaattag agcaaagaat aaatattatc atcgattctt ttaaggaact
      181 tccatgaatt tgctagaaaa aaacatacaa gctttattaa gtggggtaaa tgaaccctta
      241 ggaaataaac ttttaaattt catacaaaat aaaacttgct ctcgttttaa tatagatgaa
      301 aatttaaata tctttgataa aactcataat gttttcatgt atgaaaactt agaagaagaa
      361 ataaattttt tctatcaaag tattttagaa aaaactccta gatatccttt tatatgtatt
      421 tatggtatag gcaatgcttt actgattaaa aatttagcta aacactataa acatcttttt
      481 gtatttgaaa gtgaaataga actttttatc ctagctttaa gcacgataga tttgagtgaa
      541 gagctttgta gtggaaaaat ttatcttgtg gatatcgaag aagaaagagt ggatattcaa
      601 ctgcttatac tttttgatat gaaagatata tctgagtact taagtttata tgaaatgttt
      661 gtaaataatg tttattataa aaagttttat gaggatattt ggcataaagc agacgagctt
      721 tgcgagaaaa atattaaagt tgtgataaga aatttaggtt ctaattctga tctttctttt
      781 gagtgttatt ctcatctttt acaaaacatc ccttctatgc ttgaaagcat tccttttcaa
      841 agaatcttaa gtgaaagaaa aaacaaattc gaaaatgcta tagtagtttc tgcaggacct
      901 agtttagcta aacaacttcc tttacttaaa gcttgtcaag ataaagcagt gatcttttgt
      961 gctgatgggg ctttaagtat gcttgaaaaa gaaggtatag tgcctgatta tgttacgaat
     1021 ttagatttta ctgatctagc aatgaaattt tttcaaaata aagaaaataa aacttcttta
     1081 aatatacttt catgtgctac gtatcctaat ttggttcatt ttttagataa taaaagtgtg
     1141 attttaagag atgatccttt atg
//
LOCUS       DAPOLW010000214         1160 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.214, whole genome shotgun sequence.
ACCESSION   DAPOLW010000214 DAPOLW010000000
VERSION     DAPOLW010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1160
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.214"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..754)
                     /gene="selD"
                     /locus_tag="ROE18_001779"
     CDS             complement(<1..754)
                     /gene="selD"
                     /locus_tag="ROE18_001779"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(704..706),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HDX3651930.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDLNILKELLEGANDKVKECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTSKIGDCIILTKPLGTGILSTALKAQMLNQKHLDIMLKNMIELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFESEL"
     gene            complement(764..>1160)
                     /gene="yedF"
                     /locus_tag="ROE18_001780"
     CDS             complement(764..>1160)
                     /gene="yedF"
                     /locus_tag="ROE18_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDX3651931.1"
                     /translation="AQEFCIKVQKKNFDSSEVNIHDYNVLFLKTDKVGEGELGQNLLV
                     GFLSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEIISCGACLEFFN
                     KSKELKIGNIGNAYEILNELFGKAKIITL"
BASE COUNT          379 a          208 c          148 g          425 t
ORIGIN      
        1 gaagttcact ttcaaaaatt tcaaaagaaa tatttttatt tagcatttct tttaaatgtc
       61 ctaaaagtcc aaaacctgta acatcactca tggcacttgg atgaaattta agagcaattt
      121 gactggcttt ataatttaac tctatcatgt ttttaagcat tatatctaaa tgtttttgat
      181 ttaacatttg cgcctttaaa gctgtactta aaattcctgt tcctaaaggc ttggttaaaa
      241 tgatacaatc tccgatttta gaagtattat tagcaataaa tttactagga tgtacttttc
      301 ctgtaacact aagtccaaaa aaaagctcgg tgctttctat agtatggcca cccacgacta
      361 aagcattaca ttctttaact ttatcatttg caccttctaa aagctctttt aagatgttta
      421 aatcatgatt gcaagtatca aaacctacta tatttaaggc attaattacc tctgcaccca
      481 tagcaaaaac atcgcttaaa gcatttgctg cagcaatagc accaaaatga taagcactat
      541 ctactatagg agtgataaaa tcaagcgttt gcaccaaagc taaatcgggg ctgatttgat
      601 atacgcttgc atcttcatta tttccgatat cactaagtaa agcaggagtt ttttgcatga
      661 aatttaaaat tgttttaaga ccacccgggc ttaatttcgc tgctcagcct gctgctttaa
      721 caaaatgcgt taaattttga tttttatatt gcagtgtttt tccttataga gtaatgattt
      781 ttgctttacc aaaaagctcg tttaaaattt cataagcatt gcctatattt cctattttaa
      841 gttctttgct tttattaaaa aattctagac aagctccaca acttatgatc tcaataccta
      901 aattttcaag ttctttcata gctaaatgtg ctttatgatt ttcatcaaca ttgattaaaa
      961 cactttcatt tacgcaaaga attttacttg gagcatgatc taaatttttt aaggtactta
     1021 aaaatcctac aagtaaattt tgtcccaatt caccctcacc cactttgtcg gtttttaaaa
     1081 ataaaacatt ataatcgtga atatttactt cactagaatc aaaattcttt ttttgtactt
     1141 tgatgcaaaa ctcttgtgca
//
LOCUS       DAPOLW010000215         1141 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.215, whole genome shotgun sequence.
ACCESSION   DAPOLW010000215 DAPOLW010000000
VERSION     DAPOLW010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1141)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1141)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1141
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.215"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            1..1141
                     /locus_tag="ROE18_001781"
                     /pseudo
     CDS             1..1141
                     /locus_tag="ROE18_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
BASE COUNT          432 a          171 c          135 g          403 t
ORIGIN      
        1 aattcgaata atgaaaaatt ttttaccttt gttttggaaa atattgaaac aatttgcact
       61 tggctcaatt ctaacaaatt tagggataga tatttatcaa caaaacatcc ttatccacct
      121 ttaatcaatc ctaattttat agaaatagat tctagtcgac attgcgcaga attagcttgg
      181 gatttaaatt tacccctacc taaacactat aaatttatct atatttctcc acatggcgtt
      241 ggagcagcag catttttaag ataccttaat caatgttgcg atgtgacttg ttttgcctcc
      301 tgggttttac cacctgatag caaagagaga tattgtatta attacatgtg tctaaatgat
      361 aatacaattg ctcaatatgc tattaatata tcagaaatta atctacctta ttttgataaa
      421 tatctatctt tattagattt taattctaag attatttgcg gagttcgaga tccaatagga
      481 cttttaaagc atagctgggg aagagattgg agtaaagttt taagaaacta tccccccgaa
      541 tttaatctaa cttatgattg gcgttattac atcaactatc ttactcatca aaatcataaa
      601 attaaaatcg atataaatga actacaacaa ggagttttta tcatctctta tttattaaaa
      661 tattttaaca aagacaatgt atactatctt gatatggaag aaatccgcca atcaaaggcc
      721 ttcgatacca tgaatttact tgctataaat tttaatttta ccccccccat aaagataaat
      781 tagatttatt taaaattaaa gaatttagag gttatattcg ctatcttttt cctattacac
      841 tttatgcaaa ttctaaagat attaataaca ccttttatct taatactcct aaaaataata
      901 aaaatttcaa tattgataga acttctagca ttcccataat tttagacaga aaacatatca
      961 atcatgaaaa aatagacgta atacaagaaa ttataaaaaa cgacctatgt aatgatatgg
     1021 gtgtatatat tgataaaaat gattttaagc aattagaaca aaacaatctt ttattttcaa
     1081 caattaaaca ttatttgtat gattttttat atcaaattaa aataaccata gatgaaacag
     1141 a
//
LOCUS       DAPOLW010000216         1103 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.216, whole genome shotgun sequence.
ACCESSION   DAPOLW010000216 DAPOLW010000000
VERSION     DAPOLW010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1103)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1103)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.216"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            416..1103
                     /locus_tag="ROE18_001782"
                     /pseudo
     CDS             416..1103
                     /locus_tag="ROE18_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343599.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
BASE COUNT          452 a           90 c          196 g          365 t
ORIGIN      
        1 gtgttttgaa aaaaataaaa tttgtatagg ttggaatgat attccaaaaa ataaagatga
       61 gcgtttttta aatttaggtt caaatgataa aaatagtata ataagttttg tagaatacat
      121 gcaaatagga gatttggtat gtgtttttaa tacttcaaaa actataaaag gtgtaggggt
      181 tattgtaagt gatgttaaat atagtgatgg agaatatcaa acttatagag aagttaaatg
      241 gatttccaaa gataatgaaa taaatattct tgacttaaat aatgataaaa ttttagtgca
      301 aaaaaccgtt tatgagttat atagaattag ttctaatgat ttattagcaa agataaatct
      361 aaataatcct aaagataaca ctaacaattt agaaattgca gaagataata caacaaagaa
      421 ttttataatc atcatcgatg agatcaatcg tggtaatgta agtaagattt ttggtgagct
      481 tataaccttg atagagccta gtaaaaggat aggtgaaaaa gaagagttaa aagtgacttt
      541 gccttatagc ggtgaagaat ttggggtgcc taaaaatgtt tatatcatag gcactatgaa
      601 tacagccgat agaagcataa cttctcttga tacagcttta agaagaagat ttgaatttgt
      661 tgagatgatg cctaattctg atttacttaa taatgttttt atttgtaaag atgtagaaaa
      721 tccaaatgaa gacgaagatt atttaggaga tgatgctaaa acagagggtt atgcagagat
      781 acttcaaaat attttaataa gtataaataa aagaattgaa tttttattag atagagaaaa
      841 aactataggg catgcatttt ttatgagtga agctgttaaa tttaataaaa ataattggat
      901 taagccagat gaatatgaag aagattggta tgttttaagt atctcaaagt taaaaaaagt
      961 ttttcaaaac aaaattatcc cgcttttgca agagtatttt tataatgatt atgctttgat
     1021 taatgcggtt ttaaatgata atggtatgat ttttgaagat aaaaaagacg ataaatatct
     1081 tcaaaaaata aaaaatctag ata
//
LOCUS       DAPOLW010000217         1068 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.217, whole genome shotgun sequence.
ACCESSION   DAPOLW010000217 DAPOLW010000000
VERSION     DAPOLW010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1068)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1068)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1068
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.217"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..>1068
                     /locus_tag="ROE18_001783"
     CDS             <1..>1068
                     /locus_tag="ROE18_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDX3651932.1"
                     /translation="KAITAEFFNHDFGEFDNGICFIIKSIVHPNAINYLTKKTDNFTI
                     VSTYASFIQYLKLDYFGYFNMGFSVAHMACYLSLHLNHKNIIFIGQDLAYAENGNSHP
                     DDYQNSASYESRRYPHLYTLAYGGKEKIKTHHVWLMFKRNLEQDVQKIQKYLDTKIYN
                     CTEGGARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSI
                     EHCRDFSNKFIKSYDKIKNSFMSLQNSQKNEIFIQEIIQDIDKTKTQIDELCNTQKDL
                     IQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENAL
                     IKNILPLEEKLKERKLDKWME"
BASE COUNT          433 a          132 c          148 g          355 t
ORIGIN      
        1 gaaaagctat tacagcagaa ttttttaatc atgattttgg ggaatttgat aatggaattt
       61 gttttattat caaatccata gtacatccta atgccataaa ttacctaacc aaaaaaaccg
      121 ataattttac tatagtttca acctatgcaa gttttataca atatttaaaa ttagattatt
      181 ttggatattt taacatggga tttagtgttg cacatatggc ttgttatctt tccttacatt
      241 taaatcataa aaacatcatt tttataggac aggatttagc ttatgctgaa aatggcaatt
      301 ctcatcctga tgattatcaa aattcagcta gctatgaaag cagaaggtat ccgcatcttt
      361 atactcttgc ttatggcgga aaagaaaaaa tcaaaactca ccatgtctgg cttatgttta
      421 aacgaaattt agagcaagat gtgcaaaaaa tacaaaagta tttagatact aaaatttaca
      481 actgcaccga aggtggagca aggatagaag gaaccataga aaaacctttt ctatgggctt
      541 gtgagaattt acttcataaa gatttaaata aaccttttga aaaattagaa cctttaagtt
      601 taaataaaca aaatgagttt ttacttaagg cttattataa agtttgtaaa agtattgaac
      661 attgtagaga ttttagtaat aaatttatta aaagctatga taaaataaaa aattctttta
      721 tgagtttaca aaattctcaa aaaaatgaaa tttttattca agaaattatt caagatatag
      781 ataaaaccaa aactcaaata gatgaacttt gcaatactca aaaagatttg atacaaattt
      841 taggtcccct actaactcaa tttgaactta atcttgctag aatttatgtc ttaaatccta
      901 aaaccaaaga agatgctttt aataaaagta ttctttggat aaaagaacat ttagaattta
      961 tggaattagt ttatggacat attaaagcac aagaaaatgc tttgattaaa aatatacttc
     1021 ctttagaaga aaaacttaaa gaaagaaaat tagataaatg gatggaaa
//
LOCUS       DAPOLW010000218         1053 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.218, whole genome shotgun sequence.
ACCESSION   DAPOLW010000218 DAPOLW010000000
VERSION     DAPOLW010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1053)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1053)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.218"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            16..558
                     /locus_tag="ROE18_001784"
     CDS             16..558
                     /locus_tag="ROE18_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferase"
                     /protein_id="HDX3651933.1"
                     /translation="MKNVIIIGAGGFTRELYSYLKDANYEIIGYIDIQENNFFDLKYL
                     GNEDNFDKKLIQKASFALGVGQINLRKKILVKLSKKSCNFITFIHPQSFVSKEAKIGQ
                     GVIVCPFVTINANSNIGDFVLCNIYSSIAHDCKVGEGSILSPYATLNGNSSIGKNCFL
                     ATRVSLLPCVNLEDNCIVSR"
     gene            631..951
                     /locus_tag="ROE18_001785"
     CDS             631..951
                     /locus_tag="ROE18_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase"
                     /protein_id="HDX3651934.1"
                     /translation="MKEINIIDFGLMGKQISALFYLLGYEIGVYNKSKLNIYEFEKQI
                     KLLQRKIDFSNFNAGKINICQHIEDLKNSLTIESLNEDLNLKKEIMQILRDNNIVFSR
                     VWMI"
BASE COUNT          420 a          122 c          158 g          353 t
ORIGIN      
        1 ttttaggaga agtgcgtgaa aaatgtcatc atcataggag cgggtggctt tactagagag
       61 ctttattctt atttaaaaga tgcaaattac gaaattatag gctatattga tatacaagaa
      121 aataattttt ttgacttaaa atatctaggc aatgaagata atttcgataa aaagttgatt
      181 caaaaagcat cttttgcttt aggtgtagga caaatcaatt taagaaaaaa aatccttgta
      241 aaactttcaa aaaaatcatg taattttatc acttttatac atcctcaatc ttttgtttca
      301 aaagaagcta aaataggaca aggggttata gtgtgtcctt ttgtaaccat taatgctaat
      361 tcaaatatag gagattttgt gctttgtaat atttattcaa gcatagctca tgattgtaaa
      421 gtaggagaag gaagtatttt aagcccttat gctacactta atggaaattc aagcatagga
      481 aaaaattgtt ttttagctac tagagttagc ctgttgcctt gcgtaaactt agaagataac
      541 tgcatagtaa gcaggtagta ttattagcaa aaactacaca tccaatcaac ttatttttca
      601 taaaaatata attaaaacaa ggaaaaaaca atgaaagaaa ttaatatcat agactttggt
      661 ttaatgggta agcaaataag tgctttattt tatttattag gctatgaaat aggtgtttat
      721 aataaaagca agctcaatat atacgaattt gaaaaacaaa taaaacttct acaaagaaaa
      781 atagattttt ctaattttaa cgccggaaaa ataaacattt gccaacatat agaagatctt
      841 aaaaatagct tgactataga aagcttaaat gaagatttaa atttaaaaaa agaaatcatg
      901 caaattctta gagataataa tatagttttt tcgagagtat ggatgattta aactgcgatt
      961 ttatacattt tttcaatact atttatatca aattaataga actttgtggt tctaatttag
     1021 aacgatttac cccattgaaa gatcttaaaa aat
//
LOCUS       DAPOLW010000219         1019 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.219, whole genome shotgun sequence.
ACCESSION   DAPOLW010000219 DAPOLW010000000
VERSION     DAPOLW010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1019)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1019)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.219"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..658
                     /gene="trmD"
                     /locus_tag="ROE18_001786"
     CDS             <1..658
                     /gene="trmD"
                     /locus_tag="ROE18_001786"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HDX3651935.1"
                     /translation="FQDSILARAKEKKLFKLNFYNPRDFSKNSYHKVDDYKIGGGAGL
                     LMQAEPMYEVLRSIQEKKENPYFIFLNPSGKTFNQKDAKRLSKKEHIVFVCGRYEGID
                     ERVLEIFANEVFSIGDFILTGGELPALVMCDAILRNVNGVLGNMESLEEESFENNLLE
                     APAFSKPFIFEKKNKKFYTPSEFLKGNHARIASLKTTLASCKTKFFRPDLFLEHERKK
                     "
     gene            669..>1019
                     /gene="rplS"
                     /locus_tag="ROE18_001787"
     CDS             669..>1019
                     /gene="rplS"
                     /locus_tag="ROE18_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HDX3651936.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKIGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARIKELK"
BASE COUNT          369 a          120 c          202 g          328 t
ORIGIN      
        1 ctttcaagat tctatacttg caagagcaaa agaaaaaaaa cttttcaaac ttaattttta
       61 taatccaaga gatttttcta aaaattctta tcataaagtc gatgattata aaataggtgg
      121 tggagctgga cttttgatgc aagctgaacc tatgtatgag gtgctaagaa gtattcaaga
      181 aaaaaaagaa aatccctatt ttattttttt aaatccaagt ggtaaaacct ttaatcaaaa
      241 agacgccaaa cgcttaagta aaaaagaaca tatagttttt gtatgtgggc gctatgaagg
      301 tatagatgaa agagtgcttg aaatttttgc gaatgaagtt tttagtatag gggattttat
      361 tttaactgga ggagaattac ctgcgcttgt aatgtgtgat gcaattttaa gaaatgttaa
      421 cggggtttta ggaaatatgg aaagtttgga agaagaaagc tttgaaaata atttactcga
      481 agcgcctgct ttttcaaaac cttttatttt tgagaaaaaa aataaaaaat tttatactcc
      541 ttcagagttt ttaaagggta atcacgctag aattgcaagt ttaaaaacta ctttggcgtc
      601 ttgcaaaacg aaattttttc gtccagattt atttttagag catgaacgca aaaaataagg
      661 gattttttat gaaaaataaa tatatagaac aatttgaagc aaaacaaatt gaaggtaaaa
      721 atgttccaga ttttcgtgct ggtgatactt taaagcttgc aattcgcatc aaagaaggag
      781 ataaaacaag aatccaaaat tttgagggta tttgtattgc tagaagaggt aatggcgtaa
      841 gtgaaacttt tatcgtgcgt aaaattggcg ctaataatgt tggcgttgag agaatttttc
      901 ctatttatag tgaaagttta gaaagtatta ctgttttgcg tcgtggtcgt gtacgccgtg
      961 caagattatt ctacttaaga gatagacgcg gtaaagcagc gcgtattaaa gagcttaaa
//
LOCUS       DAPOLW010000220          989 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.220, whole genome shotgun sequence.
ACCESSION   DAPOLW010000220 DAPOLW010000000
VERSION     DAPOLW010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 989)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 989)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..989
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.220"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..>989
                     /locus_tag="ROE18_001788"
     CDS             <1..>989
                     /locus_tag="ROE18_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HDX3651937.1"
                     /translation="GFIDAKNVYYKTLNFEDFNASVNDAYFKNNLLINGQTPYENDSF
                     DIVKNKGIMEIHTQSDTASAKISSDNKEIHLKNLSYIYRKHSNSSNSTFDIATNTQNI
                     SFGGANVALILADSNKTLAFDRVEADLKGNALDLKGSRGNAKFDLYYSSNDLNLNVSN
                     IDDNYLNEFLQKQAVQDGVFNLSIKGSGLEYFDGQIDFKNTYVKDLRGINQLISFIDT
                     VPSLLMFKSPTFNQKGLSLHDGKIIFNRKKDLLSVSAINLNGDSVDIYGLGSANLRLN
                     TVDFSLELKTLKSASEAISKVPILNYVILGKNQEISTNLKIDGSIDDPKFHTE"
BASE COUNT          379 a          102 c          155 g          353 t
ORIGIN      
        1 gggtttatcg atgctaaaaa tgtttattat aaaactttaa attttgaaga ttttaatgca
       61 agtgttaatg atgcttattt taaaaataat ttacttatca acggtcaaac tccttatgaa
      121 aatgatagct ttgatattgt aaaaaataag ggcattatgg aaattcatac tcaaagtgat
      181 acagcaagtg ctaaaataag ttctgataat aaagaaattc atttaaaaaa tttaagttat
      241 atttatagaa aacattccaa ctcttcaaat tcaacatttg atattgctac taatacccaa
      301 aatattagtt ttggtggagc aaatgtagct ttaattttgg cagattctaa taaaactttg
      361 gcttttgata gagtagaagc tgatttaaaa ggcaatgctt tagatcttaa aggttctaga
      421 ggaaatgcaa aatttgatct ttattattct tctaatgatt taaatttaaa cgttagcaat
      481 attgatgata attatttaaa tgagttttta caaaaacaag ctgttcaaga tggagtgttt
      541 aacttaagta taaaaggaag tggattggag tattttgatg gacagatcga ttttaaaaat
      601 acttatgtga aggatttaag aggtataaat cagcttattt cctttatcga tactgtacca
      661 agtttattga tgtttaaatc tccaactttt aatcaaaaag gtttaagctt acatgatgga
      721 aagattattt ttaatagaaa aaaagatctt ttaagtgttt cagctattaa tttaaatggc
      781 gatagtgtag atatatatgg tttaggatca gcaaatttaa gattaaatac agtggatttt
      841 agtttagagc ttaaaacttt aaaatcagct tcagaagcta tatccaaggt tccaatttta
      901 aattatgtaa ttttaggtaa aaatcaagaa attagcacaa acttaaaaat agatggaagt
      961 atagatgacc ctaaatttca taccgaaat
//
LOCUS       DAPOLW010000221          971 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.221, whole genome shotgun sequence.
ACCESSION   DAPOLW010000221 DAPOLW010000000
VERSION     DAPOLW010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.221"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..497
                     /locus_tag="ROE18_001789"
     CDS             <1..497
                     /locus_tag="ROE18_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDX3651938.1"
                     /translation="IINVMLKLNFTLLEDIILHNGDILGLIFKKELSKPQNTIYPIEL
                     FDNTAEKFSLNIQKLNNLLNNHNSIGIYGAGSQGCSLPCYINQANCIKIKKCFDLDAR
                     KHGMYLQNSSIIIQEPNIENFKDLKAIIIAAPLYEEEIIKSLRKKGYKGDIITMEKEI
                     FIIK"
     gene            complement(523..>971)
                     /locus_tag="ROE18_001790"
     CDS             complement(523..>971)
                     /locus_tag="ROE18_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDX3651939.1"
                     /translation="NKIFNEVQIGKIIDFFDLIAKKYKIISKNHSNLAKTKIQNHLAY
                     KLGQAIIDNSKSIWGYIKMPFVLFYIRYKHQKEQLDYIQRRKINPELVLPPLEDCSDY
                     EEALKIKNYFSYKLGEAFIKASKNWYKGGYIKFIFKDVPRLKRKLD"
BASE COUNT          371 a          131 c          107 g          362 t
ORIGIN      
        1 caattattaa tgtgatgtta aaacttaatt ttactttact agaagatata attttacata
       61 atggcgatat attaggctta atttttaaaa aagagttatc taaaccacaa aataccatat
      121 atccaataga attatttgat aatactgccg agaaatttag tttaaacatt caaaaattaa
      181 ataatttatt aaataaccat aactctatag gaatctatgg agctggttct caaggttgct
      241 ctttgccttg ctatatcaat caagcaaatt gtattaaaat taaaaaatgt tttgatcttg
      301 atgcaagaaa acatgggatg tatttgcaaa attcttcaat tatcattcaa gaaccaaata
      361 tagaaaattt taaagacctt aaagccatta tcatagcagc gcctttatat gaagaagaaa
      421 ttataaaatc tttgagaaaa aaaggatata aaggagatat tattaccatg gaaaaagaaa
      481 tttttattat aaaataaaaa atactcgaac taaaaagaac gcctaatcca atttcctctt
      541 caatctaggc acatctttga atataaattt gatataccca cctttatacc aatttttgct
      601 tgctttaata aaagcttcac ctaatttata tgaaaaataa ttcttaattt ttaatgcctc
      661 ttcataatca gaacaatctt ccaaaggagg taaaactaac tctggattta tttttcttct
      721 ttgaatataa tcaagctgtt ctttttgatg cttgtatcgt atatagaata agacaaaagg
      781 catttttata tatccccata tactttttga attatctatt atggcttgac ctaatttata
      841 tgctaagtga ttttgtattt ttgtttttgc taaattactg tgatttttag aaattatttt
      901 atatttctta gcaattaaat caaaaaaatc aataatttta ccaatctgaa cttcattaaa
      961 tatcttattt t
//
LOCUS       DAPOLW010000222          960 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.222, whole genome shotgun sequence.
ACCESSION   DAPOLW010000222 DAPOLW010000000
VERSION     DAPOLW010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..960
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.222"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..>960)
                     /locus_tag="ROE18_001791"
     CDS             complement(<1..>960)
                     /locus_tag="ROE18_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDX3651940.1"
                     /translation="LSLISENDLERHKNKKLLQENAPLLNLIECDEYLNAFGDISKSF
                     FIIDEILQRIINFEPKQSKKIKIESVLKDQDIFELIEPSTDINDIIMPENTKELLENI
                     LKQQDKKVLERLHSWGIKSNKNIEAKIIFYGPAGTGKTMSALAMAKSMKKSVLSFDCS
                     KILSKWVGESEQNVRKIFDTYKNIVQTCKQSPILLLNEADQFLSTRIDGSSGSDKMHN
                     QMQNIFLEQIERFSGVIIATTNFLESLDSAFSRRFDYKIEFKKPDFKDRLKIWEKFLP
                     KKALFEKDFDINILSNYELSGAQILMVVKNTALKVAVSKDGVFK"
BASE COUNT          316 a          158 c           99 g          387 t
ORIGIN      
        1 tttaaaaacc ccatcttttg atacagctac tttcaaagct gtattcttca ccaccattaa
       61 aatttgtgct ccacttaatt cataatttga taaaatattt atatcaaaat ctttttcaaa
      121 taatgctttt ttaggtagaa atttttccca aattttaagc ctatctttaa aatcaggttt
      181 tttaaattct atcttataat caaatcttct tgaaaatgca ctatctaagc tttctaaaaa
      241 atttgtcgta gcgataatca caccactaaa acgctcgatt tgctctaaaa atatattttg
      301 catttgatta tgcattttat cactaccact acttccatct atacgcgtac ttaaaaactg
      361 atcggcttca ttgagaagta aaataggact ttgtttgcaa gtttgcacga tatttttata
      421 agtatcaaaa atttttctta cattttgctc actctctcca acccatttgc tcaaaatttt
      481 agaacagtca aaactaagaa cagatttttt cattgattta gccatagcta aagctgacat
      541 agtttttcca gtaccagcag gaccataaaa aataatttta gcttctatat ttttattact
      601 ctttataccc caagaatgaa gtctttctag gactttttta tcttgttgtt ttaaaatatt
      661 ttctaaaagc tcttttgtat tttcaggcat aataatatca ttgatgtcag tgcttggttc
      721 tataagctcg aaaatatctt gatcttttaa aacactttca attttgattt ttttactttg
      781 ttttggttca aaatttataa ttctttgtaa aatttcatca ataataaaaa aacttttaga
      841 aatatctcca aaagcattta aatattcatc acactcgatt aagtttaaaa gaggagcatt
      901 ttcttgtaat aattttttgt ttttatgtct ttctaaatca ttttcactga ttaaagaaag
//
LOCUS       DAPOLW010000223          957 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.223, whole genome shotgun sequence.
ACCESSION   DAPOLW010000223 DAPOLW010000000
VERSION     DAPOLW010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 957)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 957)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..957
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.223"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..90)
                     /locus_tag="ROE18_001792"
     CDS             complement(<1..90)
                     /locus_tag="ROE18_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HDX3651941.1"
                     /translation="MQTKYFKFLAYFSFIISLIYGFYHIIKAFD"
     gene            complement(90..914)
                     /gene="msrP"
                     /locus_tag="ROE18_001793"
     CDS             complement(90..914)
                     /gene="msrP"
                     /locus_tag="ROE18_001793"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HDX3651942.1"
                     /translation="MSSSVLASKLSALNFTSDTNPNKLEISDEELATNYVNFYEFSTD
                     KRKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDILKFPLEERIYRFRCVETWSMVVP
                     WVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPDQDALFPTIDYPYVEGLRMDEAMH
                     PLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSIKSIVKIEFTKEQPKSTWESYAPS
                     EYGFYANVNPNVSHPRWSQANERALGDFFTKPTLMFNGYEKEVASLYKNMDLKVNF"
BASE COUNT          311 a          165 c          153 g          328 t
ORIGIN      
        1 atcaaaggct tttatgatat gataaaagcc atagattaaa cttatgataa agctaaaata
       61 agcaagaaat ttaaagtatt ttgtctgcat taaaaattca ctttcaagtc catgttttta
      121 tataaacttg ccacttcttt ttcataacca ttaaacatta aagtaggctt ggtaaagaag
      181 tctcctaaag ccctttcgtt agcttgagac catctaggat gagaaacatt aggattgaca
      241 ttggcataaa aaccatattc acttggagcg taactttccc aagtggattt aggctgttct
      301 ttagtaaatt ctattttaac tatagattta atacttttaa agccatattt ccaaggaaca
      361 acaagacgta ttggagcgcc attttgaggc tttaaggctt ttttatacat tcctactgca
      421 agcaaggtaa gaggatgcat agcttcatcc atgcgaagtc cttctacata aggatagtct
      481 atagttggaa ataaagcgtc ttgatcggga aattgactct tatctaaaag agtggtgaat
      541 ttaacaaatt ttgcctcgct tgtaggtttt gccatttcaa tcaaacgacg caattcaaag
      601 cctacccaag gtaccaccat agaccaagtt tcaacacagc gaaaacgata aattctctct
      661 tctagtggaa attttaaaat atcttccatg cttaaagtta aaggtttttc tatttctcca
      721 ctgatatcga ttttccaatt ttgagtattg aaattttgtg ccaatgatac agcctttctt
      781 ttatctgttg aaaattcata aaaattgaca taatttgtag ctagttcttc atcgctgatt
      841 tcaagtttgt ttggattagt atcgcttgtg aaatttaaag cagatagttt agaagcaagc
      901 acgcttgaac ttattaaagc acccgctcca agttttaaaa aatttctcct ttgttta
//
LOCUS       DAPOLW010000224          943 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.224, whole genome shotgun sequence.
ACCESSION   DAPOLW010000224 DAPOLW010000000
VERSION     DAPOLW010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.224"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..902
                     /locus_tag="ROE18_001794"
     CDS             <1..902
                     /locus_tag="ROE18_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651943.1"
                     /translation="TRESDPSKIYYTLTSKKISFFEVFNSIKENYKCKYATPLCFYNG
                     FNLVCYEEPYVAYSYLNNQSFGKKDTSVTPSVYPLYRKSSNLPYGRRDRWFALWDSFY
                     YLYVYEKSSKGILSFLAPIVTIILAVATWWIGGQGAWLGTLIGVSENVAAGITLGISL
                     GLAVGSLTGNKLFSILNAVWGLVNFLGAWGVNNWNLAADFTKNTAQAAQEMSTFESTL
                     NIIGNLLSGASKIYDVVQSITADTPDMINEQSDDSDNEGGNGSEAEELAKDAINPTLW
                     YNFETADILNEKIEKNRNLIFTF"
BASE COUNT          335 a          106 c          181 g          321 t
ORIGIN      
        1 aaactagaga gagtgatccg agtaaaatat attatacttt aacaagcaaa aagatatctt
       61 tttttgaagt atttaactca ataaaagaaa attataaatg caaatatgca actcctttat
      121 gtttttataa tgggtttaat ttagtttgtt atgaagagcc ttatgttgct tattcttacc
      181 tcaataatca aagctttgga aaaaaagata caagtgttac gccaagtgta tatccgttat
      241 atagaaaaag ttcaaattta ccttatgggc gtagagatag atggtttgca ttatgggata
      301 gtttttatta tctttatgta tacgaaaaat caagcaaagg aattttaagc tttttggcac
      361 ctattgttac tattattttg gctgtagcta cttggtggat tggcggacaa ggtgcatggc
      421 taggaacatt gataggagtg agtgagaatg tagctgcggg tatcacacta ggaattagct
      481 taggtttagc cgtgggttca cttactggaa ataaattatt ttcaattctt aatgctgttt
      541 ggggtttggt taatttttta ggtgcttggg gtgttaataa ttggaattta gctgcagatt
      601 ttacaaaaaa tacagcacaa gcagcacaag aaatgtcaac ttttgaatca actttaaata
      661 ttattggaaa tttactaagt ggagctagta agatttatga tgttgttcaa agcattacag
      721 cagatactcc tgatatgata aatgagcaaa gcgatgattc tgataatgaa ggtggaaatg
      781 gaagtgaagc tgaagaatta gcaaaagatg caattaatcc aactttatgg tataattttg
      841 aaactgcaga tatattaaat gaaaaaatag aaaaaaatag aaatcttatt tttacattct
      901 aaaaagttat tgacctatct attgactttg taaaaatata taa
//
LOCUS       DAPOLW010000225          939 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.225, whole genome shotgun sequence.
ACCESSION   DAPOLW010000225 DAPOLW010000000
VERSION     DAPOLW010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 939)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 939)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.225"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..>939
                     /locus_tag="ROE18_001795"
     CDS             <1..>939
                     /locus_tag="ROE18_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HDX3651944.1"
                     /translation="INSGKSVGISAKLTLWVGILVVLILAITSTVSYFDAKNHTYELL
                     KENQLKTMDDVKVTFENYSKSKQKAIEVLAYESAKKLEDENISLLLDSFKKAFDFDIV
                     FIAFDKNNKMLLSNGTILDKKSNFDITKQIWYQEAKNNKGITITQPYKSPIDQEIGIT
                     YVFPIYKNNQLIAFVGGDYNLDKFSKDVLSLGHSSTTYAAVYDSEGRIIFHEVLDRIL
                     TKNTLSVNIANAIKENPEYIDLNKRDILFPVFDDKGIKYEAMCDTSSNGLYRICAVTL
                     DSNYTSAVNSILMKQVIVGIIAIIIALILIRFLISR"
BASE COUNT          356 a          132 c          139 g          312 t
ORIGIN      
        1 caataaattc aggcaaatcc gttggaattt cagccaagct tacgctatgg gttggaattt
       61 tagttgtatt aattttagca atcacaagta ccgttagtta ctttgatgcc aaaaatcaca
      121 catatgaatt actaaaagaa aatcaattaa aaactatgga tgatgttaaa gtaacttttg
      181 aaaactattc caaaagcaag caaaaagcta tagaggttct agcatatgaa agtgctaaaa
      241 aattagaaga tgaaaatatt tcactgcttc tagattcttt taagaaggcg tttgattttg
      301 atattgtttt tattgcgttt gataaaaaca acaaaatgct tttgtcaaat ggaacaattt
      361 tagataaaaa atcaaatttt gacattacaa aacaaatttg gtatcaagaa gcaaaaaata
      421 acaaaggcat cacaataact caaccatata aatcccctat agatcaagag attggtataa
      481 cttatgtttt ccctatttat aaaaataatc aacttatagc tttcgttgga ggcgattaca
      541 atctagataa attttccaaa gatgtattat ctttaggaca ctcatcaact acttatgctg
      601 ctgtttatga ctctgaagga agaattattt ttcacgaagt gcttgataga attttaacaa
      661 aaaacacttt aagcgttaat attgctaacg ccataaaaga aaaccctgaa tatatagatc
      721 taaataagag agatattctt tttcctgtat ttgatgataa aggtatcaaa tatgaagcaa
      781 tgtgcgatac aagttccaat ggattatatc gtatttgtgc tgtaacttta gatagtaact
      841 atacttccgc tgttaattcc attttaatga aacaagttat agtcggtatt atagctataa
      901 tcatagcttt aatcttgatt agatttttaa tcagcagaa
//
LOCUS       DAPOLW010000226          928 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.226, whole genome shotgun sequence.
ACCESSION   DAPOLW010000226 DAPOLW010000000
VERSION     DAPOLW010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.226"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            28..>928
                     /locus_tag="ROE18_001796"
     CDS             28..>928
                     /locus_tag="ROE18_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDX3651945.1"
                     /translation="MSKNVKNLDTSFFGHPKPLLSLSLTELWERFSFYGIRPLLYLFM
                     IASFEKSGMNLKPEEASAIMGIFASCLYLAALPGGWLADNYLGQKRAILLGALTIAFG
                     HLCIAFSYFNNKMIFVGMVFLVIGTGLFKTCASVMVGMLYKKNDARRDSGFTLFYMCF
                     NFGAFVAPLICGFLQKEYGWHFGFGAGGIGMLLAVIIFYLKTMPDLKEFDEKVGIDST
                     WDRPSKKSKNAFYIIIVSGIVLLGAIFLILGGFIKLDAQVINKNIILTILACAGIYFL
                     YLFAFTSLKIEEKRNLIIFIVLFL"
BASE COUNT          286 a          114 c          163 g          365 t
ORIGIN      
        1 taaataaaaa tacacaaagg atataaattg agtaaaaatg taaaaaattt agatacttca
       61 ttttttggac atccaaaacc acttttatct ctttcactta ctgagctttg ggaaagattt
      121 tctttttacg gaattcgtcc cttgctttac ctttttatga tagcaagttt tgaaaaaagt
      181 ggaatgaact taaaacctga agaagcaagt gcaattatgg gaatttttgc aagttgttta
      241 tatcttgctg ctttgccagg tggatggctt gcggacaatt acttaggaca aaaaagagca
      301 attttactag gtgctttaac tatagcattt ggacatttgt gcatagcctt ttcttatttt
      361 aacaataaaa tgatttttgt tggtatggtt tttttggtta taggtacagg actttttaaa
      421 acttgtgctt ctgtaatggt tggaatgctt tataaaaaaa atgatgcaag gcgtgactct
      481 ggttttactc ttttttatat gtgctttaat tttggtgctt ttgtagctcc tttaatttgc
      541 ggctttttac aaaaagaata cggatggcat tttggttttg gtgcaggtgg gattggtatg
      601 cttttagcgg taattatttt ctacctaaaa actatgcctg atttaaaaga atttgatgaa
      661 aaagttggca tagactctac ttgggataga ccaagcaaaa aaagcaaaaa cgcattttac
      721 atcatcattg tatcaggtat tgttttgctt ggagcaatat ttttaatcct tggtggtttt
      781 ataaaattag atgcacaagt tattaataaa aatattattc taactatctt agcttgtgct
      841 ggaatttatt ttttatatct tttcgctttt acttctttaa aaatagaaga aaaaagaaat
      901 ttaattattt ttattgtttt atttttag
//
LOCUS       DAPOLW010000227          910 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.227, whole genome shotgun sequence.
ACCESSION   DAPOLW010000227 DAPOLW010000000
VERSION     DAPOLW010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 910)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 910)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.227"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..115)
                     /gene="tatA2"
                     /locus_tag="ROE18_001797"
     CDS             complement(<1..115)
                     /gene="tatA2"
                     /locus_tag="ROE18_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA2"
                     /protein_id="HDX3651946.1"
                     /translation="MVFLIPLLIIIGVIFGIDYVYFKNQDLKVQVKKEQKEL"
     gene            complement(128..466)
                     /locus_tag="ROE18_001798"
     CDS             complement(128..466)
                     /locus_tag="ROE18_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HDX3651947.1"
                     /translation="MNNLSSVLILAKEEYINDLKKAISEIPFCSVELCENEKIIVVIE
                     SENLEDELNSYKMLEKLPNIISINMVFSYQDLNDDIQKAINSGAIETIEKNENAENVR
                     YYGSVFNQFS"
     gene            complement(459..>910)
                     /locus_tag="ROE18_001799"
     CDS             complement(459..>910)
                     /locus_tag="ROE18_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HDX3651948.1"
                     /translation="NDAVLNEDKSRLIAGFESGEVELFDLKNWKMLKNYDKMHKDNIY
                     QVDFKNNVILSCGTDRRIGVVKNEEQNFLQKDFLIYTCALSPSGEFAVYSDNEAGVSE
                     VFSTSDFKPVKTFNNENLMSEFIIFLNNKDFIVSGFGDSIMFRSIDE"
BASE COUNT          330 a          169 c           67 g          344 t
ORIGIN      
        1 ttaattcttt ttgttctttt ttaacttgca cttttaaatc ttgattttta aaatacacat
       61 aatcaattcc aaaaataaca ccaattataa taagcaatgg gattaaaaat accatatact
      121 ttacacttta agaaaattga ttaaacacac taccatagta gcgaacattc tcagcatttt
      181 catttttttc tatcgtttct attgcgccac tattgattgc tttttggata tcatcattta
      241 aatcttgata agaaaaaacc atattaatac tgataatatt tggcaatttc tcaagcattt
      301 tataagagtt taactcatct tctaaatttt cactttcaat cacaactata atcttttcat
      361 tttcacaaag ttctacagaa caaaaaggaa tttcagatat agcctttttt aaatcattta
      421 tatattcttc ttttgctaaa atcaaaacac tagaaagatt attcatcaat actcctaaac
      481 attatactat caccaaagcc tgaaacgata aaatctttat tgtttaaaaa aataataaac
      541 tcactcatca aattttcatt attaaaagtt ttaacaggct taaaatcact tgtgctaaaa
      601 acttcactaa ctccagcttc attatcgcta taaacagcga attctccact aggacttaaa
      661 gcacaagtat atatcaaaaa atctttttgt aaaaaatttt gttcttcatt ttttacaact
      721 cctatacgcc tatccgttcc acaacttaaa ataacattat ttttaaaatc tacttgatag
      781 atattatctt tatgcatttt atcatagttt ttcaacatct tccaattttt caaatcaaaa
      841 agttctactt cgccactctc aaaacctgca attagtctac tcttatcttc atttaaaact
      901 gcatcattaa
//
LOCUS       DAPOLW010000228          908 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.228, whole genome shotgun sequence.
ACCESSION   DAPOLW010000228 DAPOLW010000000
VERSION     DAPOLW010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 908)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 908)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..908
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.228"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            221..493
                     /locus_tag="ROE18_001800"
     CDS             221..493
                     /locus_tag="ROE18_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HDX3651949.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGIVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
     gene            480..>908
                     /locus_tag="ROE18_001801"
     CDS             480..>908
                     /locus_tag="ROE18_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HDX3651950.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENEFEDGHALNYQ
                     DFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLD"
BASE COUNT          352 a          112 c          143 g          301 t
ORIGIN      
        1 tttaagcttc ttaaaatatg aaaaaaacga agaaattctg caacaatcat ttagaaactt
       61 aaatggaatt tttggtaaca aaaactttac agcttatgat ttaggattta gcatacaaaa
      121 taatgacgaa cctttttaat ttatttaaat ttcaagcctt aatttacctt tttttaaaca
      181 caatcacgct aaagtatata aaaattttta aggataaatt atgatgcctt ttagtgatga
      241 agagcttata aatcctgtta aagcaagttt agaaaagagc ttgcctatgc ttgaacgtga
      301 tggcggaggg cttgaatttt taggaattaa aaatgggatc gtttatgtcc atttaatagg
      361 agcttgtaaa ggctgtgcat cgagtggaac aacgctaaaa tacggtcttg aaaggcaact
      421 taagattgat attcatccgg aaatcactat aatcaattta aacggcggag cagacgaatt
      481 tgcaaaatta taaaaaactt ggaattgaac atttttacaa gaaagatttt aaaactgcaa
      541 aaatgtattt ttctatggct tatgaaaaac gcaaaaataa acgcttgcta aattttatct
      601 gcctttgtga tcttgcttta aaatctccta aagaagcttc tttacttttt gatttttata
      661 tagaacatta caaaatctct agcattgata aagacttaga agaaatttta agtacaattg
      721 aatttaaaaa acaagaaaac aaacaggaaa acgaatttga agatgggcat gcgttaaatt
      781 atcaagattt tttaaaaagc gaagaagaac ttggctttca aaaaagtttt gaaaatatca
      841 ttaacagcac taaattagtt attgataatc gtgatgattt tttagatttt ttggaaaaat
      901 tacttgat
//
LOCUS       DAPOLW010000229          903 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.229, whole genome shotgun sequence.
ACCESSION   DAPOLW010000229 DAPOLW010000000
VERSION     DAPOLW010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..903
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.229"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..571
                     /locus_tag="ROE18_001802"
     CDS             <1..571
                     /locus_tag="ROE18_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HDX3651951.1"
                     /translation="NQKSSYKKYQNFTLFKLDEKIFHKKHSLFYNFPLPFKNPHKEGI
                     LKLILYKDGRYEFQQSALKQNSNDILLLSDDKINSKSDNLYHKSSLRTFYNQHSYKWQ
                     QNLCYDIAFFNEKDELCEGSRTNLILEKNSQFYTPQIQSGMLNGVYRNFLINLGLIKE
                     KALFKQDLFEAENIYCINSVRGLKKVKLQ"
     gene            568..>903
                     /locus_tag="ROE18_001803"
     CDS             568..>903
                     /locus_tag="ROE18_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HDX3651952.1"
                     /translation="MKKILFIDNYDSFSYTIIYYLKELGFECKVIKNDAFKKAKELEK
                     FDFTHLIISPGPHSPKESKLSLKAIKYFKKNKKILGICLGHQCIAEIFGGRVSKMQNP
                     MHGKISKLYF"
BASE COUNT          362 a          127 c          110 g          304 t
ORIGIN      
        1 aaatcaaaaa agttcttata aaaaatatca aaattttaca ctttttaaac tcgatgaaaa
       61 aattttccac aaaaaacact ctttatttta taattttccc ctacccttta aaaatccaca
      121 taaagaagga attttaaagc ttattttata caaagacgga agatacgaat ttcaacaaag
      181 tgccttaaag caaaattcaa acgatatttt gcttttaagt gatgataaaa ttaactcaaa
      241 aagtgacaat ctctatcaca aaagctcttt gcgtactttt tataatcaac actcatacaa
      301 atggcagcaa aacttgtgtt atgacatagc tttttttaac gaaaaagatg aactttgcga
      361 aggctcaaga accaatctca tcttagaaaa aaactctcaa ttttatactc cacaaattca
      421 aagcggtatg ttaaatggag tatatagaaa tttcttaatc aatcttggtt tgataaaaga
      481 aaaagcatta tttaaacaag atttatttga agcagaaaat atttattgta ttaattccgt
      541 gcgtggttta aaaaaggtaa aattacaatg aagaaaattt tatttataga taattatgat
      601 tcttttagtt ataccatcat ctattatctt aaagaacttg gttttgaatg taaagtgata
      661 aaaaatgatg cctttaaaaa agctaaagaa ttagaaaaat ttgatttcac tcatcttatc
      721 atctctcctg gccctcattc tcctaaggaa tctaaattaa gcttaaaagc aatcaaatat
      781 tttaaaaaaa ataaaaaaat tttaggtata tgtttaggac atcagtgtat agctgaaatt
      841 tttggcggta gggtttctaa aatgcaaaat cccatgcatg gtaaaatttc taaactttat
      901 ttt
//
LOCUS       DAPOLW010000230          903 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.230, whole genome shotgun sequence.
ACCESSION   DAPOLW010000230 DAPOLW010000000
VERSION     DAPOLW010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..903
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.230"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..900)
                     /locus_tag="ROE18_001804"
     CDS             complement(<1..900)
                     /locus_tag="ROE18_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HDX3651953.1"
                     /translation="MKSVKLKVSLIANLIAVVCLIILGVVTFIFVKQAIFHEVVNAEI
                     NYVKTAKNSIESFKARNSLALESLAKSILKHPIEQLDSQDALMHYVGKDLKNFRDAGR
                     FLAVYIAQPNGELVVSDPDSDAKNLDFGTYGKADNYDARTREYYIEAVKTNKLYITPS
                     YIDVTTNLPCFTYSIPLYKDGKFIGVLAVDILAADLQAEFENLPGRTFVFDEENKVFV
                     STDKALLQKGYDISAIANLAKTKEDLEPFEYTRPKDGNERFAVCTKVSGIYTACVGEP
                     IEQIEAPVYKIAFIQTAIVIFTSI"
BASE COUNT          312 a          164 c          108 g          319 t
ORIGIN      
        1 aatacttgta aaaataacaa tcgcagtttg tataaatgca attttataaa ctggagcttc
       61 tatttgttct attggctctc caacgcaagc agtataaatt ccagaaacct ttgtgcatac
      121 agcaaatctt tcattaccat cttttggtct agtatactca aaaggttcaa gatcctcttt
      181 agttttagca agatttgcaa ttgcactaat atcataacct ttttgtaaaa gagctttgtc
      241 tgtagaaaca aatactttat tttcttcatc aaatacaaaa gttctacctg gtaaattttc
      301 aaattcagct tgcaaatctg ccgcaagaat atctacagcc aaaaccccta taaatttacc
      361 atctttataa agcggaatag aatatgtaaa gcaaggtaaa tttgtagtta catcaatata
      421 agatggggta atataaagtt tatttgtttt aactgcttct atataatact ctcttgttct
      481 agcatcataa ttatcagctt ttccataagt tccaaaatct aaatttttag catcagagtc
      541 tggatcgctt acaacaagtt cgccatttgg ttgagcaata taaactgcta agaatcttcc
      601 agcatctcta aaattcttta aatcttttcc aacataatgc attaaagcat cttgactatc
      661 taactgttct ataggatgct ttaaaatact tttagctaaa ctttcaagag ctaaagaatt
      721 tcttgcctta aaagactcta tagaattttt agccgtttta acataattta tttcagcatt
      781 cacaacttca tgaaaaattg cttgctttac aaatataaat gttacaacac ctaaaattat
      841 caaacacact actgcgatta aatttgcaat cagtgaaacc ttcaatttta cgcttttcat
      901 aat
//
LOCUS       DAPOLW010000231          893 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.231, whole genome shotgun sequence.
ACCESSION   DAPOLW010000231 DAPOLW010000000
VERSION     DAPOLW010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.231"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..>893
                     /locus_tag="ROE18_001805"
     CDS             <1..>893
                     /locus_tag="ROE18_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDX3651954.1"
                     /translation="TQYIEKENELNVFKIIGDNPQNIYKIYKYKNALASDKLEISKID
                     YIIFLDSDNYWELNCIEECVVRMQNVDVLWFDHACIYDDGIEDKGQKTRMNVFNFTQE
                     CTITPRDYAKQAIKVGSRDISFSWGGMIDFSFLKQLKLKFINKIINEDIHFGMVLFAS
                     ADSIYILPKRLYLCRLRANSISNHDKKVTKANVSEYFKDLYEFFGENAKEAKNYLKAA
                     SRMITALELIEFFKDQKNENSQAIKEAFLPFYVKKALMIKKFKKDPLNLKEKLPIIKP
                     FIQTKIPYDLWKIWQKIKGIL"
BASE COUNT          353 a           90 c          154 g          296 t
ORIGIN      
        1 aaacacaata tattgaaaaa gaaaatgaat taaatgtttt taagattatt ggcgataatc
       61 cacaaaatat ttataaaatt tataagtaca aaaatgcttt agcgagtgat aagctagaaa
      121 tttcaaagat tgattatatt atctttttag attctgataa ttattgggag ttaaactgca
      181 tagaagagtg tgttgtaaga atgcaaaatg tagatgtatt atggtttgac catgcttgta
      241 tttatgatga tggtatagaa gataagggtc aaaaaacaag gatgaatgta tttaatttta
      301 ctcaagaatg cactatcact ccaagagact atgctaagca agctataaaa gtaggttcga
      361 gggatatctc gtttagctgg ggtggtatga tagatttttc atttttaaaa caattaaaac
      421 ttaaatttat caacaaaatc atcaatgaag atattcattt tggcatggtt ttgtttgcga
      481 gtgctgatag tatctatatt ttaccaaaaa gattgtactt atgccgtttg agggcaaata
      541 gtatatcaaa tcatgataaa aaagttacaa aggcaaatgt gtcagagtat tttaaagact
      601 tgtatgaatt ttttggagaa aatgctaaag aggcaaaaaa ctatttaaaa gcagcaagta
      661 ggatgataac agctttggag ttgatagaat tttttaaaga tcaaaaaaat gaaaattctc
      721 aagccataaa agaggctttt ttgccttttt atgtaaaaaa ggctttgatg attaaaaaat
      781 ttaaaaaaga tcctttgaat ttaaaggaaa aattacctat aattaaacct tttatccaaa
      841 caaaaattcc ttatgatctt tggaaaattt ggcaaaaaat aaagggtatt tta
//
LOCUS       DAPOLW010000232          886 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.232, whole genome shotgun sequence.
ACCESSION   DAPOLW010000232 DAPOLW010000000
VERSION     DAPOLW010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 886)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 886)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.232"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..420
                     /locus_tag="ROE18_001806"
     CDS             <1..420
                     /locus_tag="ROE18_001806"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HDX3651955.1"
                     /translation="SGGLSGHAAMMSFFNVCGIGYLYHHMDLMKNRYIDYYHFSRIEN
                     LYSIITYGQYSLTQGMNNIGKYLTLINKIPILFLVRDPISRLKTGVNHPILNPKSMKE
                     ICLNNDYSDVFKNKMYVGDIGKNFYYSEKPSMKYLPR"
     gene            417..653
                     /locus_tag="ROE18_001807"
     CDS             417..653
                     /locus_tag="ROE18_001807"
                     /inference="COORDINATES: protein motif:HMM:NF022634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HDX3651956.1"
                     /translation="MINEDTMYQTSLCLLFSNRDITYIDMEEIKPAKAFDTMCDLANK
                     FGFKKPTDKKFFEGVMNGDLAGFIPINLFIDKKI"
     gene            653..>886
                     /locus_tag="ROE18_001808"
     CDS             653..>886
                     /locus_tag="ROE18_001808"
                     /inference="COORDINATES: protein motif:HMM:NF022634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HDX3651957.1"
                     /translation="MYNNKVIYKDNDSIHLQITSTNLIEIYKQSKEYINFTKEFFDKP
                     LKYENLGIFLKPQEFERLKQDSKLFDVAKRYLNN"
BASE COUNT          350 a           92 c          131 g          313 t
ORIGIN      
        1 tctggtggat tatctgggca tgctgcaatg atgtcatttt ttaatgtttg tggcattgga
       61 tatttgtatc atcatatgga tttaatgaaa aatagatata tagattatta ccatttttct
      121 aggattgaaa atttatattc aattataaca tatggacaat acagtttaac gcaaggaatg
      181 aataatatag gtaaatattt gactttaatt aataaaattc caattctttt tttggtaaga
      241 gatcccatat caagactaaa aaccggagta aatcatccta ttctaaatcc aaaaagtatg
      301 aaggagatat gtttaaacaa tgattatagt gatgtgttta agaataaaat gtatgttggc
      361 gatattggaa aaaattttta ctattcagaa aagccaagca tgaaatattt acctagatga
      421 ttaatgaaga tacaatgtat cagacatcgc tttgcttatt attttcaaat agagatatta
      481 cttatattga catggaagaa ataaaaccag caaaggcatt cgatacaatg tgtgatttag
      541 ctaacaaatt tggttttaag aaaccaacgg ataaaaaatt ttttgaagga gttatgaatg
      601 gagatttagc aggttttata cctattaatt tatttattga taaaaaaatt taatttataa
      661 taacaaagtt atttataaag ataatgatag catccatctt caaatcacat ctacaaattt
      721 aattgaaatt tataaacaat ctaaagaata tatcaacttt actaaagaat tttttgataa
      781 acctttgaaa tatgaaaatt tgggaatatt tttaaaacca caagaatttg agcgtttaaa
      841 gcaagattct aagctatttg atgttgctaa aagatatttg aataat
//
LOCUS       DAPOLW010000233          853 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.233, whole genome shotgun sequence.
ACCESSION   DAPOLW010000233 DAPOLW010000000
VERSION     DAPOLW010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 853)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 853)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..853
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.233"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            154..288
                     /gene="rpmH"
                     /locus_tag="ROE18_001809"
     CDS             154..288
                     /gene="rpmH"
                     /locus_tag="ROE18_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HDX3651958.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            285..611
                     /gene="rnpA"
                     /locus_tag="ROE18_001810"
     CDS             285..611
                     /gene="rnpA"
                     /locus_tag="ROE18_001810"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HDX3651959.1"
                     /translation="MKNFDKFSTNEEFSSVYKVGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFVAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            608..>853
                     /gene="yidD"
                     /locus_tag="ROE18_001811"
     CDS             608..>853
                     /gene="yidD"
                     /locus_tag="ROE18_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HDX3651960.1"
                     /translation="MICLKILRFYQKFLSPLKPAVCRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRILRCNPFFKGGFDYPRVSKNFYPINLCFKPI"
BASE COUNT          316 a          104 c          133 g          300 t
ORIGIN      
        1 tcaataattt taaattctga catttttaac cttttaaaaa taatttcaaa atttatcaaa
       61 agaatttaaa aattactctt aatcaaaagc aatttataag taagattaag ataaaataca
      121 agtttatttt ataatttttt aaggaaaaat caaatgaaaa gaacttatca gccgcatggt
      181 actccaagaa aacgcactca tggtttccgt gttcgtatga aaactaaaaa tggtcgcaaa
      241 gtgatcaatg caagacgcgc taaaggtaga aaaagacttg ctgtgtgaaa aattttgata
      301 aatttagcac aaacgaggaa ttttcatctg tatataaagt aggcaaaaaa tggcattgcg
      361 aaggtgtgat cattttttat ctgaatagtt atgaaaaaaa aatagcagtt gttgctagta
      421 aaaaagttgg aaaagcagtg gttagaaatc gttcaaaacg aattttaaga gctttgtttg
      481 ctaagtttga aagatatctt caagatggca aatatatttt tgtagctaaa aatgaaatca
      541 ctgaactttc tttttctagg ttagaaaaaa atctaaaatg gggattgaaa aaactagaat
      601 gtttcaaatg atatgcctaa aaatactccg tttttatcag aaattcttaa gccctttaaa
      661 acccgctgtt tgtaggtatt atcctagttg ttctgagtat gcgctttggc agtttcaaaa
      721 aaagaatttt tttctagctt ttttttctac tttttttaga attttaagat gcaacccttt
      781 ttttaaaggg ggttttgatt atcctagagt ttctaaaaat ttttatccta taaatttatg
      841 ttttaagcct ata
//
LOCUS       DAPOLW010000234          850 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.234, whole genome shotgun sequence.
ACCESSION   DAPOLW010000234 DAPOLW010000000
VERSION     DAPOLW010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..850
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.234"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..612)
                     /locus_tag="ROE18_001812"
     CDS             complement(<1..612)
                     /locus_tag="ROE18_001812"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HDX3651961.1"
                     /translation="MQFLYNKQAGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNF
                     LYNYTITNLTRNSCTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKL
                     HLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVD
                     FQGEQQSHFNEKELYFIGPEGGFNNDERLLFNRKISLKSSNILK"
     gene            complement(614..>850)
                     /locus_tag="ROE18_001813"
     CDS             complement(614..>850)
                     /locus_tag="ROE18_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651962.1"
                     /translation="IIFTGCLLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKA
                     RRFRKYATFRWISCLILPFEIFLLFLPFLIERYL"
BASE COUNT          306 a          113 c          100 g          331 t
ORIGIN      
        1 ttttagaata ttagagcttt taagagagat ttttcggtta aacaataatc tctcatcatt
       61 gttaaatcca ccttcaggac ctataaaata caattctttt tcattgaaat gactttgttg
      121 ttctccttga aaatcaacca taattgcatt tggaaatttt tgaacaaatt cttgagtgct
      181 ttggtggata attaaatcca ttttagtatt tctaccgcat tgttcacaag aagaaataat
      241 gattttttca aatctttcta aatcgatttt aaaatttctt tgtgaaaaat ttgtaaaaac
      301 caaatgtaac ttttttactc caagttcatt taagaaaggt agagtttttt ctaaaatttt
      361 aatatctata atggctaagg ctaagtttaa ttcactttgt tttatatttt gtgatttttt
      421 gtttaaaaat tttaaagtgc aagaatttct tgttaaattt gtgattgtat agttgtaaag
      481 aaaattatct tgtaaatttc taagatttag ctccgaattt tcctttactc ttcttacttt
      541 taaatggtta aagttttcac cttgaagttg tataaactct tctccagctt gcttgttata
      601 caaaaattgc attttataga tatctttcta ttaaaaaagg caaaaacaat aaaaaaattt
      661 caaaaggtaa aatcaaacaa ctaatccatc taaaagtggc atattttcta aatcttcttg
      721 cttttttaaa acaaacaaag tgaaaaattg ctaaggcaaa aattaagatc caagaaaaaa
      781 tcattaccca gatattgaca ttcatttgaa attgtttcat tgctgataac aaacaacctg
      841 taaaaataat
//
LOCUS       DAPOLW010000235          842 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.235, whole genome shotgun sequence.
ACCESSION   DAPOLW010000235 DAPOLW010000000
VERSION     DAPOLW010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.235"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..>842
                     /locus_tag="ROE18_001814"
     CDS             <1..>842
                     /locus_tag="ROE18_001814"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651963.1"
                     /translation="TIGARVYYEKFLLNYNFNTFHTQHLKSPKKIALCISGAMRGVEW
                     ELNLKKVIESFQFDVDVFLFTWDSKFLWPGLNGAGGNWAKRLLDETLLKSIPQEIMHK
                     NNLKQYFPNVFSKLNQEYSVRLDAERLENINNIKRVIIENQEDFLKKYPLDRNNLFIN
                     ASKIWYSNYQLLKSLVQYEAENNFQYDFIIKVRPDVEYNINFSIDKLEKLYINDLMIK
                     HHESLYGGLNDNFAAGRRGAMEIYLSLWKYGFLNKSIDFFKNFPNFNSAHNLLQQFCS
                     LMKI"
BASE COUNT          322 a           82 c          128 g          310 t
ORIGIN      
        1 gactatcggt gctagagttt attatgaaaa atttctatta aattataatt ttaatacttt
       61 tcatactcaa catttaaaat ctccaaaaaa aatcgcttta tgtataagtg gtgctatgag
      121 aggagtagag tgggaattaa atttaaaaaa agtgatagaa agttttcagt ttgatgttga
      181 tgttttttta tttacttggg attcaaaatt tttgtggcca ggtttaaatg gagcaggagg
      241 aaattgggct aaaagattat tagatgaaac attattaaaa tctattcctc aggaaattat
      301 gcataaaaat aatttaaaac aatattttcc aaatgttttt tctaaattaa atcaagaata
      361 ttccgttcgg ctcgatgctg aaaggttgga aaatataaat aacattaaac gagtaattat
      421 agaaaatcaa gaagattttt taaaaaaata tcctttagat agaaacaatt tatttattaa
      481 tgcttcgaaa atatggtatt ctaattatca attattaaaa tcattggttc agtatgaagc
      541 ggaaaataat tttcaatacg attttattat taaagttagg cctgatgtag agtataatat
      601 aaatttttca atcgataaac ttgaaaaatt atatataaat gatcttatga taaagcacca
      661 tgaaagttta tatggtggac ttaacgataa ttttgctgct ggacgaagag gagcaatgga
      721 aatttattta tcactatgga aatatggttt tttgaataaa tccatagatt tttttaaaaa
      781 ttttcctaat tttaattcag ctcataatct tttgcagcaa ttttgttctt taatgaaaat
      841 aa
//
LOCUS       DAPOLW010000236          834 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.236, whole genome shotgun sequence.
ACCESSION   DAPOLW010000236 DAPOLW010000000
VERSION     DAPOLW010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 834)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 834)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..834
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.236"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..788
                     /locus_tag="ROE18_001815"
     CDS             <1..788
                     /locus_tag="ROE18_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HDX3651964.1"
                     /translation="EFQSPNDGDEKSIETLSLKDLQNFYKNFIHLSDLVVILGGDLEE
                     KQAKEDLLKLLSKLQIGKKNTPKKYELGKNIKDEILVRPESEQAYIYFATPFFADFKD
                     KDLYLAKIALFVLGQGGFGSRIMEEIRVKRGLAYSAYAMLDMNMSFSRVFGYLQTKNE
                     SAKEAKKIVKELFEDFIKNGMTQNELDQAKNFLIGSTPLRYESLSKRLSMSFNEFYQG
                     LNLGYYKEELKLMEKVKLETINAYIKKHQELLNISFASIQNEN"
BASE COUNT          331 a           92 c          139 g          272 t
ORIGIN      
        1 aagaatttca aagtccaaat gatggagatg aaaaaagtat agaaactttg tctttaaaag
       61 atttgcaaaa tttttataaa aattttatcc atcttagtga tttggttgtg attttaggag
      121 gagatttaga agaaaaacaa gccaaggaag atcttttaaa actcttatca aaacttcaaa
      181 taggcaaaaa aaatactcca aaaaaatatg agttaggcaa aaacatcaaa gatgaaattt
      241 tggtacgccc agaaagtgaa caagcttata tttattttgc tacgcctttt tttgctgatt
      301 ttaaagataa ggatttatat cttgcaaaaa ttgccttatt tgtgctaggg caaggaggat
      361 ttggttcaag gattatggaa gaaattcgtg ttaaaagagg tcttgcatac tcagcttatg
      421 ctatgcttga tatgaatatg tctttttcta gagtttttgg atatttacaa actaaaaatg
      481 aaagcgctaa agaagctaaa aaaatcgtaa aagagctttt tgaagatttt ataaaaaatg
      541 gcatgactca aaatgaactt gatcaagcta aaaattttct cataggatca actcctttgc
      601 gttatgaaag cttaagcaag cgtttatcta tgtcttttaa cgaattttat caaggtttaa
      661 atttgggata ttataaagaa gagttaaaac ttatggaaaa ggttaaactt gaaaccataa
      721 atgcttatat taaaaaacat caagagcttt taaatataag ttttgcaagc atacaaaatg
      781 aaaattaaag aaagtgattt tgaatttttt aaaaaattaa aaattagaag tgct
//
LOCUS       DAPOLW010000237          826 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.237, whole genome shotgun sequence.
ACCESSION   DAPOLW010000237 DAPOLW010000000
VERSION     DAPOLW010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.237"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..>826
                     /locus_tag="ROE18_001816"
     CDS             <1..>826
                     /locus_tag="ROE18_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDX3651965.1"
                     /translation="IDEIHRLSKTQQEMLLIPMENYRLILIGASTENPYFVLSSGIRS
                     RSMLFEFKSLGAKELETLLLRVQEKMKFSIDKEAKDFLLKSADARAMLNLLEFVLVLD
                     EKHISLENLKKLRNTINSEGVSSKDTHYILASAMIKSLRGSDVDAAIYYLARLIDAGE
                     SADFIARRLVIFSSEDVGNADPNALNLAVSTLDAVKNIGYPEARIILAQCVVYLASTI
                     KSNASYKAINEALNYVKNNEALEIPNYLNNNHQEKQNYLYPHDFGGWVEQKYLGKNL"
BASE COUNT          297 a          124 c          144 g          261 t
ORIGIN      
        1 attgatgaaa ttcaccgcct tagcaaaacc caacaagaaa tgcttttaat tcctatggaa
       61 aattaccgtt taattttaat tggtgcaagc actgaaaatc cctattttgt tttaagttct
      121 ggtataagaa gtcgttccat gctttttgaa tttaaatctt taggggcaaa ggaacttgaa
      181 actttactct tacgcgtaca ggaaaaaatg aaatttagta ttgataaaga agctaaagat
      241 tttctactta aaagtgctga tgcaagagct atgctaaatt tgcttgaatt tgtcttggtt
      301 ttagatgaaa aacatatcag tcttgaaaat cttaaaaaac ttcgcaacac cataaatagt
      361 gaaggtgtta gctcaaaaga tacacattat attttagcaa gtgcaatgat aaaaagttta
      421 cgcggaagtg acgttgatgc agctatttat tatcttgcaa gacttattga tgcaggagaa
      481 agtgcggatt ttatcgctag gcgtttggtg attttttcaa gtgaagatgt cggaaatgcc
      541 gatccaaatg ctttaaattt agcagtttcg actctagatg ctgttaaaaa tataggttat
      601 cctgaagcaa gaattatcct agcccaatgc gtagtttatt tagcaagcac aatcaaatcc
      661 aatgcaagct acaaagctat caatgaagct ttaaactatg taaaaaataa tgaagcttta
      721 gaaataccta attatcttaa caacaatcat caagaaaaac aaaactatct ttatccacat
      781 gattttggtg gctgggtaga gcaaaaatat cttggtaaaa atttaa
//
LOCUS       DAPOLW010000238          821 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.238, whole genome shotgun sequence.
ACCESSION   DAPOLW010000238 DAPOLW010000000
VERSION     DAPOLW010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 821)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 821)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.238"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..>821
                     /locus_tag="ROE18_001817"
     CDS             <1..>821
                     /locus_tag="ROE18_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDX3651966.1"
                     /translation="WTKMAIGFGVCLLFVFILMLLLGRRIEKNFNKILDFLDSIGDHK
                     VVILEKGIFKEFNLLNEKLLKTKDKILKNTQKNKKQSDKITLKNTQLASVISAISHEL
                     KNPLSVIDLSLEMLKDEKLEDKKLKKELLEKISRQSVKLNALTHKLNFVFNLNSEALQ
                     MQEFDLFSLCEKITKNPGFERVALQGKSTKVKADEFLIEQVIINLLSNALKYSQKKVI
                     LTARDQKIIVQDFGKGIEEDKIKLITKKFYKIDVKSDNSFGLGLFLVKKILNIHK"
BASE COUNT          335 a           82 c          135 g          269 t
ORIGIN      
        1 tttggacaaa aatggcaatc ggttttggag tatgcttgct gtttgttttt attttaatgt
       61 tgttgttagg tagaagaata gagaaaaatt ttaataaaat tttggatttt ttggattcta
      121 taggggatca taaagttgtt atattagaaa aaggaatctt taaagaattt aatttactaa
      181 atgagaaact tttaaaaact aaggataaaa ttctaaagaa tacccaaaaa aataaaaaac
      241 aaagcgataa aatcacttta aaaaatactc agcttgctag cgtgatttct gctatttctc
      301 atgagcttaa aaatccatta agcgtgattg atcttagctt agagatgcta aaagatgaga
      361 aattggaaga taaaaaatta aaaaaggaat tactagaaaa aatttcacgt caaagcgtta
      421 aacttaatgc tttaacccat aagcttaatt ttgtttttaa tcttaatagt gaagccttgc
      481 agatgcaaga attcgatctt ttttctctat gtgaaaaaat cactaaaaac ccaggctttg
      541 aaagagttgc attgcaaggt aaaagcacga aagttaaggc tgatgaattt ttaatcgagc
      601 aagtgattat aaatttgctt tctaatgctt taaaatatag tcaaaaaaaa gtcattttaa
      661 cggcaagaga tcaaaagata atagtgcaag attttggaaa aggcatagaa gaagataaaa
      721 taaaattgat tacaaaaaaa ttttataaaa ttgatgtaaa aagtgataat tcttttggtt
      781 tgggactttt tttagtaaag aaaattttaa atatacataa a
//
LOCUS       DAPOLW010000239          783 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.239, whole genome shotgun sequence.
ACCESSION   DAPOLW010000239 DAPOLW010000000
VERSION     DAPOLW010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 783)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.239"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..>783)
                     /locus_tag="ROE18_001818"
     CDS             complement(<1..>783)
                     /locus_tag="ROE18_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDX3651967.1"
                     /translation="DEYLLLVYKLGKYDFLLQNFDYINKLSLFLGIDSKDLYDFMSLC
                     LKQKSINENFLSGKYKTSYIGFLSSRLDIINYEDCQLFLKILNEVRNSQDLILQSFFL
                     KNSIDFFYINSSNIFFRDGIYFIMLEIIYSNFLNTLGGRLYYDKLRVIAGEYFYQKKS
                     YSGSRIALCLNGQLRPGWRDSIKALIDSFSHLGNIDVFIYSWNMENLWPGSGGNGIGW
                     IRRFFHPMLHRCPPELIMSNIDFSKKFPNVFNVISKELNKTI"
BASE COUNT          327 a          114 c           72 g          270 t
ORIGIN      
        1 aaattgtttt attcaattct tttgaaatta cattaaaaac attcggaaat ttcttagaaa
       61 aatcgatatt agacattatg agttcaggag gacatctatg aagcatagga tgaaaaaatc
      121 ttctaatcca tcctatacca tttccaccag aacctggcca tagattttcc atattccaag
      181 agtatataaa aacatcaata ttgccaagat gagagaaaga atcaattaac gctttaatac
      241 tatcacgcca accaggtctt aactgcccat ttagacataa agctatccta cttcctgaat
      301 aagatttttt ttgataaaaa tattctcctg caataactct taatttatca taatacaatc
      361 ttccacctaa agtatttaaa aaattactgt atataatttc tagcataata aaataaattc
      421 catctctaaa aaaaatatta cttgaattga tgtaaaaaaa atctattgaa ttttttaaaa
      481 aaaaagactg taagattaaa tcttgagaat ttcttacttc atttaaaatt tttaaaaata
      541 gttggcaatc ttcataattt ataatatcta aacgagaaga taaaaatcct atatatgaag
      601 tcttatattt accagataag aaattctcat ttatagactt ttgctttaaa cataaagaca
      661 taaaatcata taagtcttta gaatcaatac ctaaaaataa tgataattta ttaatataat
      721 caaaattttg taataaaaaa tcatatttcc ctaatttata tactaaaagt aaatattcat
      781 cag
//
LOCUS       DAPOLW010000240          776 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.240, whole genome shotgun sequence.
ACCESSION   DAPOLW010000240 DAPOLW010000000
VERSION     DAPOLW010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 776)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.240"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..649
                     /locus_tag="ROE18_001819"
     CDS             <1..649
                     /locus_tag="ROE18_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HDX3651968.1"
                     /translation="NLVKPYYDTQNFLKFFFKKNNHQWLIYTNSSFKNPNSMDDYPNL
                     KKHLDKFQNVITSDNKPYGLHRARDEKFFTGSPRIVALRKCVGEPKFSYVDFDCYVSA
                     TFYVIKTQRINVKYLTTILNSKLIAFWLKHKGKMQGNNYQIDKEPLLNIPIVTINSKN
                     QKIADELINLVDEILKVKEQDKNANTQELENKINSLVYKLYNLNEEEIKTIEGKQ"
BASE COUNT          331 a           95 c          105 g          245 t
ORIGIN      
        1 taatcttgta aaaccttatt atgatactca aaatttttta aagttctttt ttaaaaaaaa
       61 taatcatcaa tggcttattt atacaaattc atcttttaaa aatccaaatt ctatggatga
      121 ttatccgaat ttaaaaaaac atttagataa atttcaaaat gttatcactt ctgataataa
      181 accttatggt ttgcaccgag caagagatga aaaatttttt acaggaagtc ctagaatagt
      241 agcacttaga aaatgcgtag gtgagcctaa atttagctat gttgattttg attgttatgt
      301 gtcagcaact ttttatgtga ttaaaactca aagaattaat gttaaatatt taactactat
      361 tttaaattca aagcttatag cattttggtt gaaacataaa ggaaaaatgc aaggcaataa
      421 ttatcaaatt gacaaagagc ctttactaaa tatccctata gtaactataa attccaaaaa
      481 tcaaaaaata gctgatgagc ttataaattt agtcgatgag attttaaaag tcaaagaaca
      541 agacaaaaac gcaaacaccc aagaactaga aaacaaaatc aattctttgg tttataaact
      601 ttacaaccta aacgaagaag aaataaaaac tatagaagga aagcaatgaa agaactaata
      661 gtaatagcag atatagctga aaatttagga atatctaaag agaatgtaag ttttgataat
      721 ataaataaaa cttatgttat agctaaaaaa gctgatggta agccttgcga tatttt
//
LOCUS       DAPOLW010000241          723 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.242, whole genome shotgun sequence.
ACCESSION   DAPOLW010000241 DAPOLW010000000
VERSION     DAPOLW010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.242"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            27..>723
                     /locus_tag="ROE18_001820"
     CDS             27..>723
                     /locus_tag="ROE18_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HDX3651969.1"
                     /translation="MKVKWSRDFSIKNMQLDKQHELIFEITNLANDLALNIQDNNTQH
                     KNDLKQILVKLFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKELLEHSNDI
                     VKMSQELSILTKDWILDHFANEDLWIANFTKKTLHLQEIHYTLEQYIKLKSIKQDLRA
                     EKTHDYICNCSLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNA
                     TFEDALQNHHFTTQ"
BASE COUNT          309 a          107 c           89 g          218 t
ORIGIN      
        1 aataatttat atcgcaagga aaaaatatga aagttaaatg gagtagagat tttagcatta
       61 aaaatatgca attagacaaa caacacgaac taatttttga aattaccaat cttgcaaatg
      121 atttagctct aaacattcaa gataataata cacaacacaa aaatgattta aaacaaattc
      181 ttgtaaagct atttcaatac atcaaaattc attttaaaga tgaagaaaaa tttatggaaa
      241 gcattgattt tcctttgatt gaagaacata aaaaatctca tcaaatatta gtagaaaaaa
      301 ctaaagagct tttagaacac tcaaatgata ttgtaaaaat gtctcaagaa ctttccatat
      361 taaccaaaga ttggatttta gatcattttg ctaatgaaga tttatggata gctaatttta
      421 caaaaaaaac cctacacctt caagaaatcc attatacctt agaacaatac ataaaactaa
      481 aatcaatcaa acaagaccta agggctgaaa aaactcatga ttatatttgc aattgttctt
      541 tgcgtatcca tgcagttcca cagactatac atcaagagct tgttagcaaa gaaaatacct
      601 taaagtgcga aaaatgtggg caaattttag ttcatttgga ttattttgat ttgaatcaaa
      661 atttcgaaaa attcaatgct acttttgaag atgcactaca aaatcaccat ttcacgactc
      721 aaa
//
LOCUS       DAPOLW010000242          721 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.243, whole genome shotgun sequence.
ACCESSION   DAPOLW010000242 DAPOLW010000000
VERSION     DAPOLW010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 721)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.243"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            15..>721
                     /locus_tag="ROE18_001821"
     CDS             15..>721
                     /locus_tag="ROE18_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HDX3651970.1"
                     /translation="MNSIFSIIEYQAFSKEDLKEIFKEKAEGFYKELEDFAKNNENLL
                     GFKNKNSLKAKNYVGIIQTKSGVLEILPKCTNLDSYKKEDSSSNHDKEKLRRCYELDN
                     ISKNNDFYEKDFKFNPKNLLINMLKTLKNSPFKKSQISSLQSSKIPLFEVFITMFLDE
                     FDSVYKKGLMRSYLSCEENRAFLKGKLLFNEHIKRNLIHKERFFTSNDEFVLDIAPNR
                     LIKSTLNFLKSKTSLNK"
BASE COUNT          304 a           84 c          103 g          230 t
ORIGIN      
        1 attaaaaaac gaaaatgaat agtatttttt ccatcatcga ataccaagct ttttctaaag
       61 aagatttaaa agaaattttc aaagaaaagg ccgaagggtt ttataaagag ctagaagact
      121 ttgcaaaaaa taatgaaaat cttctaggct ttaaaaacaa aaattcctta aaagctaaaa
      181 attatgtcgg cattatacag actaaaagcg gggttttgga gattttgcca aaatgcacga
      241 atttagatag ttataaaaaa gaagatagtt cttcaaatca tgacaaagaa aaactaagaa
      301 gatgttatga attagacaat atttctaaaa ataatgattt ttatgaaaaa gattttaaat
      361 ttaatcctaa aaatcttttg ataaatatgc taaaaacctt aaaaaactcc ccgtttaaaa
      421 aatcgcaaat ttcatctttg caaagttcta aaattccttt atttgaagtg tttatcacta
      481 tgtttttaga tgaatttgat agcgtatata aaaaaggctt gatgagatct tatctaagtt
      541 gcgaagaaaa tagggctttt ttaaagggaa aattactatt taacgagcat atcaagcgaa
      601 atttgataca caaagaaaga ttttttacaa gcaatgatga gtttgtttta gatatagcac
      661 ccaatcgttt gataaaatca acgctaaatt ttttaaaatc aaaaacaagt ttgaataaat
      721 t
//
LOCUS       DAPOLW010000243          713 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.244, whole genome shotgun sequence.
ACCESSION   DAPOLW010000243 DAPOLW010000000
VERSION     DAPOLW010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.244"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            393..713
                     /locus_tag="ROE18_001822"
                     /pseudo
     CDS             393..713
                     /locus_tag="ROE18_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855892.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
BASE COUNT          313 a           91 c           91 g          218 t
ORIGIN      
        1 atggaaaatt tgactttagt gaagaaatta aacttataca aaatgaaaat attacaattg
       61 acaaagaata tgattttact tatttagttc ctccagtaga ggattataaa acagctatag
      121 aagaatataa ttttagaatg gatccagtta aattagttcc tttgcaaaaa caaatcaaag
      181 aaaaagataa tatcatctct actttaaatc aagaaaaaac aaccctacaa aatgaactta
      241 attcttttcc tattaaaaaa caacgtttag aattagctaa tctagaacaa gatttgatta
      301 ttaaaaaatt agaaagtaaa aaacttgcta aatctttggg tataaaaatg agcataataa
      361 atcctaaaat tacttttatt caagctaatt cagctaaagc tcgtattcaa aaccatctgt
      421 cctataaact aggacaagct ttaatcgcta attcaaaaag tatattagga tatataagaa
      481 taccttatgt attatcttat ataaaagaca aacataaatt tgaacaaaaa gcctatgaag
      541 aaaaaataaa agaaaatcca aatttagctt tacctccttt agaaacttat cctgactata
      601 atgaagcttt aaaagaaaaa gaatgtttta cttataaact aggcgaagct ttaatgcagg
      661 ctaataaaaa ttggtatggg ggggggtata tcaaatttat attcaaagat gtg
//
LOCUS       DAPOLW010000244          698 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.246, whole genome shotgun sequence.
ACCESSION   DAPOLW010000244 DAPOLW010000000
VERSION     DAPOLW010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.246"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..>698
                     /locus_tag="ROE18_001823"
     CDS             <1..>698
                     /locus_tag="ROE18_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651971.1"
                     /translation="IQNSLKDIAEFNSAYNGNGNNEEMSIKDMIEDIKISQKDIDEIY
                     WKIFDIQSDNKNESSALIEIEKAKEYANKMQNDYMKFYDQEDSQGNITEGIISKLKQA
                     CDDIEENKDKIEKFEKFYNEIFIGVEADENGKGGKLSLEKYLNEKRTEINNLISSKKQ
                     ELENCLNGYKDKFENLYKEKNDEIDELLPGATSAGLAEAYKDEREVAQTNIKTWNIIF
                     GVSIFVFIIVFGIY"
BASE COUNT          304 a           53 c          123 g          218 t
ORIGIN      
        1 ctatacaaaa ttcattgaaa gatattgcgg aatttaattc tgcttataat ggaaatggca
       61 ataatgagga aatgtctata aaagatatga ttgaagatat aaaaatatct caaaaagata
      121 tagatgaaat ttattggaaa atttttgata ttcaatctga taataaaaat gaaagtagtg
      181 ctttaatcga gatagagaaa gctaaagaat atgcaaataa aatgcaaaat gattatatga
      241 aattttatga tcaggaagat tctcaaggca atattaccga agggattatt tcgaagttga
      301 aacaagcttg tgatgatatc gaagaaaata aagataaaat agaaaaattt gaaaaatttt
      361 acaatgaaat ttttattggt gttgaagcag atgaaaatgg aaaaggtgga aagttatctc
      421 ttgaaaaata tttaaatgaa aaacggactg aaataaacaa tttaatttct agtaaaaaac
      481 aagaattaga aaattgttta aatggctata aagataaatt tgaaaatttg tataaagaaa
      541 aaaatgatga aatagatgaa ttattaccag gtgcaacttc tgcgggatta gccgaggctt
      601 ataaagatga aagagaggtt gcacaaacaa atatcaaaac ttggaatata atttttggag
      661 tgtctatatt cgtttttatt attgtttttg gtatttat
//
LOCUS       DAPOLW010000245          666 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.247, whole genome shotgun sequence.
ACCESSION   DAPOLW010000245 DAPOLW010000000
VERSION     DAPOLW010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 666)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.247"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            44..666
                     /gene="wlaN"
                     /locus_tag="ROE18_001824"
                     /pseudo
     CDS             44..666
                     /gene="wlaN"
                     /locus_tag="ROE18_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344532.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,3 galactosyltransferase"
BASE COUNT          292 a           68 c           98 g          208 t
ORIGIN      
        1 aaatttatag tataattata tcaaaaaaaa ataaagagct aaaatgagtc aaatttccat
       61 catactacca acttataatg tggaaaaata tattgctaga gcattagaaa gttgcattaa
      121 ccaaactttt aaagatatag aaatcattgt agtagatgat tgtggtaatg ataaaagtat
      181 agatatagct aaagagtatg ctagtaaaga tgatagaata aaaatcatac ataatgaaga
      241 gaatttaaag cttttaagag caagatatga aggtgctaaa gtagcaactt caccttatat
      301 catgttttta gattctgatg attatttaga acttaatgct tgcgaagaat gtattaaaat
      361 tttggatatg ggtggggggg gtaaaattga tttgttgtgt tttgaagctt ttattaccaa
      421 tgcaaaaaaa tcaataaaaa aattaaatat ataacaagga aaatacaaca acaaagaatt
      481 tacaatgcaa atacttaaaa ctaaaaatcc attttggaca atgtgggcta aaataatcaa
      541 aaaagatatt tatttaaaag ccttcaacat gttaaatctc aaaaaagaaa tcaaaataaa
      601 tatggcagaa gatgccttat tatattatcc tttgacaata ttatctaatg aaatatttta
      661 cttaac
//
LOCUS       DAPOLW010000246          660 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.248, whole genome shotgun sequence.
ACCESSION   DAPOLW010000246 DAPOLW010000000
VERSION     DAPOLW010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.248"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            17..>660
                     /locus_tag="ROE18_001825"
     CDS             17..>660
                     /locus_tag="ROE18_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class D beta-lactamase"
                     /protein_id="HDX3651972.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMICLKNMENLELFGKTGFNDEQKIAWIVGFVYL"
BASE COUNT          238 a           75 c          112 g          235 t
ORIGIN      
        1 aatagaaaga tattttatga aaaaaataac tttattttta cttttcttaa atttagtgtt
       61 tgggcaagat aagatattaa ataattggtt taaagagtat aatacaagcg gcacttttgt
      121 tttttatgat ggaaaaactt gggcgagtaa cgacttttca agggctatgg agactttctc
      181 tcccgcttcc acttttaaaa tttttaatgc tctaattgca cttgatagtg gtgtgataaa
      241 aactaaaaaa gaaatttttt atcactatag aggtgaaaaa gtatttttat cttcttgggc
      301 gcaagatatg aatttaagtt cagctataaa atattctaat gttcttgctt ttaaagaagt
      361 ggcaagaaga attggtatca aaactatgca agaatattta aacaagcttc attatggtaa
      421 tgctaaaatt tccaagatcg atactttttg gcttgacaac tcactaaaaa taagcgctaa
      481 agaacaagca attttgcttt ttagactttc acaaaatagc ttaccttttt ctcaagaagc
      541 aatgaatagt gttaaggaaa tgatttgttt aaaaaatatg gaaaatttag agctttttgg
      601 aaaaacaggt tttaatgatg agcaaaaaat tgcttggatt gtaggttttg tgtatttaaa
//
LOCUS       DAPOLW010000247          651 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.249, whole genome shotgun sequence.
ACCESSION   DAPOLW010000247 DAPOLW010000000
VERSION     DAPOLW010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 651)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.249"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..93
                     /locus_tag="ROE18_001826"
     CDS             <1..93
                     /locus_tag="ROE18_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDX3651973.1"
                     /translation="NFYESLNAKHLKQWRNYRLSGENLEKLCDL"
     gene            90..>651
                     /locus_tag="ROE18_001827"
     CDS             90..>651
                     /locus_tag="ROE18_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HDX3651974.1"
                     /translation="MIRSLYYLKAMGFNFVDTHTNHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFSLMEPKIKNAKLLILDVFGQKSENESGILLNSKKGEKLKHYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWNELKLIQPAFLLCLGEYTFKSLGFKDYHIL
                     KGEVFAYKNFFIMPSYDLDFIEKNPSY"
BASE COUNT          243 a           75 c           93 g          240 t
ORIGIN      
        1 aatttttatg aaagtttaaa cgctaaacat cttaaacaat ggagaaatta tcgtctaagt
       61 ggagaaaatt tagaaaaatt atgtgattta tgataagaag tctttattat ttaaaagcta
      121 tgggatttaa ctttgttgat acacatacaa accactttga acaagtacaa aattttcaag
      181 aattaaaaca acttgtttca tcttgcacct tatgccaatt ttccaaaaca agaaaattta
      241 gtcttatgga gcctaagata aaaaatgcca aattgctaat tcttgatgtt tttgggcaaa
      301 agagtgaaaa tgaaagcgga attttactta attcaaaaaa aggtgaaaaa ttaaaacact
      361 atatttatca aattttaggg ctttgcgatg aagattttta tttttcttat ttatttaaat
      421 gtttttgtaa tggaaaattt gatgattttt cgctacaatc ttgcttacca tttttctgga
      481 acgaactaaa actgattcaa cctgcttttt tactttgtct aggagaatat acatttaaaa
      541 gcttgggatt taaagattat cacattttaa aaggtgaagt ttttgcttat aaaaattttt
      601 tcataatgcc aagttatgat ttagatttta tagaaaaaaa tccaagttat g
//
LOCUS       DAPOLW010000248          648 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.250, whole genome shotgun sequence.
ACCESSION   DAPOLW010000248 DAPOLW010000000
VERSION     DAPOLW010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.250"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            1..613
                     /locus_tag="ROE18_001828"
                     /pseudo
     CDS             1..613
                     /locus_tag="ROE18_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343817.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          255 a           88 c           72 g          233 t
ORIGIN      
        1 gaaataaaat ttccctgaaa gtttataatt atatgcaaga gcactccact tctccaaaag
       61 atttaagtct tatttgtcta agagaaaata aacatattga attttttcaa atattttaca
      121 aggctctcgc ttattttgta gcctttagaa aaaaacttga tggagaacaa aaaattaaaa
      181 atttgatttc aaatatcaat gactgttttg gctatcattt cttgaattct gactttaaca
      241 atcttcaaaa ttttcaaaaa agcgatttgt tcaccttacc tgaaaaacat cttaaatatt
      301 ttcacttcgc catgattcat ctttgtttca tggttttaaa tcctttaaat tttaaagact
      361 ctaatcggca tcttgataaa gcgattaatt atcttgtcga tggaactttt gaaatttatg
      421 agctcatctt taaagaatat tttttattgt tttcaaaaga taaagagctc aaggatgaac
      481 ttagaaaatt aaaaaaatta gaattaaaat tctaatgcaa gaaacttcaa aaattaaact
      541 acttaatcat tataaagaat tttgcgaaga aatattctac aatatagaac ttgaaaaaat
      601 cacacaaaat taatcctgta ttaacattgt tatagtttaa taataaaa
//
LOCUS       DAPOLW010000249          623 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.251, whole genome shotgun sequence.
ACCESSION   DAPOLW010000249 DAPOLW010000000
VERSION     DAPOLW010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 623)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.251"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..>623)
                     /locus_tag="ROE18_001829"
     CDS             complement(<1..>623)
                     /locus_tag="ROE18_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDX3651975.1"
                     /translation="NNFNKNLKALSGFEYNDLRKKLEDLKELREFTFTQGKDNLDINI
                     IKKRNLKKMYQDPIKELEKNLEYFKDFTRYPVLFFYGFGNGILYKILLQNQALKRIII
                     FEKELELIFLALNFIDFSKDLSLGRLIILHHDDINLPKMDKVFRLIGDLFYRSYNLHI
                     ANDFYEHYKEDILKLNKLNMQIIKNHNLMRGNDPKDAMQGIEQFVYNL"
BASE COUNT          218 a           82 c           78 g          245 t
ORIGIN      
        1 agattataaa caaattgttc tataccttgc atggcatctt taggatcatt accacgcata
       61 agattgtgat ttttgatgat ttgcatgttg agtttattaa gttttaaaat atcttcttta
      121 tagtgttcat aaaaatcatt agcaatgtgt agattataag aacgataaaa caaatcccct
      181 atcaaacgaa aaactttatc cattttagga agattaatat catcatgatg taaaataatg
      241 agtcgcccta agcttaaatc tttgctaaaa tctatgaaat ttaaagccaa aaagataagt
      301 tctaattctt tttcaaagat gattattctt ttaagtgctt gattttgaag tagaatttta
      361 tataaaattc catttccaaa accataaaaa aaaagcacag gatagcgtgt aaaatcttta
      421 aaatattcta aatttttttc aagctctttg atgggatctt gatacatttt ttttaaattt
      481 ctttttttta tgatattgat atcaagatta tcttttcctt gagtgaaagt aaattctcta
      541 agctctttta gatcctcaag ttttttgcgt aagtcgttat actcaaaacc gcttaaagct
      601 tttaaatttt tgttaaaatt att
//
LOCUS       DAPOLW010000250          613 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.252, whole genome shotgun sequence.
ACCESSION   DAPOLW010000250 DAPOLW010000000
VERSION     DAPOLW010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 613)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.252"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..210
                     /locus_tag="ROE18_001830"
     CDS             <1..210
                     /locus_tag="ROE18_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HDX3651976.1"
                     /translation="EFYKEERKKIINECEILNFMRINPDILMKYKNKLDKELVHIKQH
                     RPDIVASWKYYQEFEKMCQELDGNI"
     gene            266..>613
                     /locus_tag="ROE18_001831"
     CDS             266..>613
                     /locus_tag="ROE18_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HDX3651977.1"
                     /translation="MHNPNSAIERIKNHLAYKLGKVMIDFSHQRNNYKYGGGYIALFK
                     KLYQINKQHKKEQKIYQQTIQVFPQLKYPNLETCSDYEQALKYKFHLSYMLGEVLIQT
                     FQNLHKGSMFKLAK"
BASE COUNT          272 a           70 c           81 g          190 t
ORIGIN      
        1 gagttttata aagaagaaag aaaaaaaata attaatgaat gcgaaatttt aaattttatg
       61 agaataaatc ctgatatttt aatgaaatac aagaacaaat tagataaaga acttgttcat
      121 attaaacaac atcgtccaga tatagtagca tcttggaaat actatcaaga atttgaaaaa
      181 atgtgtcaag agttggatgg taatatttag tataaatgag ttataattaa ttataagata
      241 tttattttaa acaaggatgc cccttatgca taacccaaac tcagccatag aaagaataaa
      301 aaatcattta gcttataaat taggcaaagt tatgattgac tttagtcatc aaagaaataa
      361 ttataaatat gggggggggt atatagcatt atttaaaaaa ctttatcaaa taaacaaaca
      421 acacaaaaaa gaacaaaaaa tttatcaaca aaccatacaa gtttttcctc aactcaaata
      481 tccaaattta gaaacatgca gcgattatga gcaggcttta aaatataaat ttcatttatc
      541 ttatatgctt ggtgaagttc ttatacaaac ttttcaaaat ttacataaag gaagtatgtt
      601 taaattagct aaa
//
LOCUS       DAPOLW010000251          604 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.253, whole genome shotgun sequence.
ACCESSION   DAPOLW010000251 DAPOLW010000000
VERSION     DAPOLW010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.253"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..>604)
                     /locus_tag="ROE18_001832"
     CDS             complement(<1..>604)
                     /locus_tag="ROE18_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDX3651978.1"
                     /translation="YLALLIAKIAPWYVDGVIDNSGTVLPLLECIIGKDLSRPEFFFS
                     DLNKLVGMFIKTYWTREDERLSYFFTNENYMIRSLLNSSHLTIQASVNKNIILVSYHS
                     LKDPFNTAKDKQTLFLAYKELGYDATLHLIKDESEIDGRFIKDLNHGMRITDKALFRK
                     ELPLMLEKLQGRKSFMQENSISYPCGNKVFTFKDVENQLK"
BASE COUNT          211 a           99 c           71 g          223 t
ORIGIN      
        1 aattttaact gattttctac atctttaaaa gtaaacactt tatttccaca aggataagag
       61 atggaatttt cttgcatgaa agattttctt ccttgtagtt tttcaagcat taaaggaagt
      121 tcttttctaa ataaggcttt atcagtaatc ctcataccat gatttaaatc ttttataaat
      181 cttccatcaa tctcactttc gtcttttatt aaatgtaaag tggcgtcata tcctagctct
      241 ttatacgcta aaaaaagagt ttgtttatct tttgctgtat taaatggatc ttttaaacta
      301 tgataagata ctaaaataat atttttattg acactagctt gtatagttaa atgggaagaa
      361 tttaacaaag aacgaatcat ataattttca ttagtaaaaa aataagataa tctttcatct
      421 tctctagtcc agtacgtttt aataaacatg cctaccaatt tatttaaatc actaaaaaaa
      481 aattcgggtc tacttaaatc ttttcctatt atacattcca ataatggcaa aacagttcct
      541 gaattatcaa tcacgccatc cacataccaa ggagctatct ttgctatgag caaggctaag
      601 tatc
//
LOCUS       DAPOLW010000252          599 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.255, whole genome shotgun sequence.
ACCESSION   DAPOLW010000252 DAPOLW010000000
VERSION     DAPOLW010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.255"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..213)
                     /locus_tag="ROE18_001833"
     CDS             complement(<1..213)
                     /locus_tag="ROE18_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDX3651979.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDA"
     gene            complement(359..>599)
                     /locus_tag="ROE18_001834"
     CDS             complement(359..>599)
                     /locus_tag="ROE18_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDX3651980.1"
                     /translation="TNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFA
                     AESANYSKANILAQSGSYAMAQANSVQQNVLRLLQ"
BASE COUNT          182 a          104 c          108 g          205 t
ORIGIN      
        1 agcatcatta ccattgttga tagcttgacc taaagtagct gcttgtgaac gcaaagaatc
       61 tgctatagcc atccctgaag catcatctgc tgcggagttg attctaagac ctgaactaag
      121 tctgcttaaa gacttatcca gttctctagc attaacaact gaatttgcat gtgcgtttaa
      181 tgcaccgatg ttagtgttta tcctaaaacc cattttaaat cctttcaaaa tattgcatcg
      241 aaaagattaa agcaagaagt gttccaagtt ttagtttaat taaaaatttt agagtttaaa
      301 ataaaaaagc ctagttctaa actaggcttg gatttgtata tattgcagct ttattaaatt
      361 actgtagcaa tcttaaaaca ttttgctgaa cagaattagc ctgtgccatg gcataagagc
      421 cactttgagc taagatattt gctttagagt agtttgcact ctcggctgca aagtctacat
      481 cacggatttg tgactcagct gctttaacgt ttacttgagt aacggtaatg ttgtttatag
      541 ttgatgtaac ttgattttgc actgaaccaa tgtcagctct gatttgatca agatttgtt
//
LOCUS       DAPOLW010000253          584 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.256, whole genome shotgun sequence.
ACCESSION   DAPOLW010000253 DAPOLW010000000
VERSION     DAPOLW010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.256"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..575)
                     /locus_tag="ROE18_001835"
     CDS             complement(<1..575)
                     /locus_tag="ROE18_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651981.1"
                     /translation="MKFFLLVFCFVNLALAKVYKGELHFYHLQDKEIFAIVYDNAPMT
                     PLFDRDKNQTSSSFLIVDDINGNLEIPLVKINDFWQDERKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFNDDFKEFHPVHKGVFSFEQIRQKPIFLQD
                     GKISFEEWYYFYEDGMSRAILELNNFVYDINA"
BASE COUNT          222 a          101 c           58 g          203 t
ORIGIN      
        1 gcattaatat cataaacaaa attattcaac tctaaaatag cacgactcat accatcttca
       61 taaaaataat accattcttc aaaactaatt tttccatctt gtaaaaaaat aggtttttgg
      121 cgaatttgtt caaaactaaa tacaccctta tgaacaggat gaaattcttt aaaatcatca
      181 ttaaaaccta taaaatcaag actacgcttt atacgaatgc catcttgcgt ttcgacaagt
      241 tctaaagtag ttgttcctaa attttctcct tgaaaatttt tattatcata tgtaagcatt
      301 ttagaagaat tgattttata ttttttacgc tcatcttgcc aaaaatcatt tatcttaacg
      361 agtggaatct ctaaatttcc atttatatca tcaacaatta aaaaactaga acttgtttga
      421 tttttatccc tgtcaaaaag tggagtcata ggtgcattat cataaactat ggcaaaaatt
      481 tctttatcct gtaaatgata aaaatgcaat tcacctttat aaactttcgc taaagctaga
      541 tttacaaagc aaaataccag taaaaaaaat ttcaaactct atcc
//
LOCUS       DAPOLW010000254          574 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.257, whole genome shotgun sequence.
ACCESSION   DAPOLW010000254 DAPOLW010000000
VERSION     DAPOLW010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 574)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.257"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..>574)
                     /gene="pif1"
                     /locus_tag="ROE18_001836"
     CDS             complement(<1..>574)
                     /gene="pif1"
                     /locus_tag="ROE18_001836"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HDX3651982.1"
                     /translation="KKVNNINQEKLSKLETPLVCFKAQVKKEDKRIKDEELDSWIRSL
                     NILEELNIKIGARIIFCVNNWDKNYYNGEQGIIEDILYEEEKIYISIIKNNGMKILLE
                     PYTFFMEELEQSGKDFVVNILASVTQFPIKLAYAITIHKSQGMSIEKLVCDIDHIFEN
                     GQLYVALSRATNPNTLKIYSTKKINFGFYFA"
BASE COUNT          193 a           95 c           64 g          222 t
ORIGIN      
        1 gcaaaataaa atccaaaatt tatctttttt gtagaataaa tttttaaagt atttgggttt
       61 gtagcgcgag aaagagcgac ataaagctgt ccattttcaa aaatatgatc aatatcacac
      121 actaattttt caatactcat accttgtgat ttgtgtatag taatagcata agctaattta
      181 ataggaaact gtgtaacact tgcgagaata ttaacaacaa aatctttacc tgattgctca
      241 agttcttcca tgaaaaaagt ataaggttca agtaaaattt tcatcccatt atttttaata
      301 atgctaatat aaattttctc ctcttcataa agaatatctt ctataatgcc ttgctctcca
      361 ttataataat tcttatccca attatttacg caaaaaataa tacgagcgcc tattttaata
      421 tttaattctt ccaatatatt taagcttcta atccaagaat caagctcttc atcttttatt
      481 ctcttatctt cttttttaac ctgagcctta aagcatacaa gcggggtctc aagtttgctt
      541 aatttttctt gattgatatt gtttactttt ttat
//
LOCUS       DAPOLW010000255          565 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.258, whole genome shotgun sequence.
ACCESSION   DAPOLW010000255 DAPOLW010000000
VERSION     DAPOLW010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.258"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..>565
                     /locus_tag="ROE18_001837"
     CDS             <1..>565
                     /locus_tag="ROE18_001837"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651983.1"
                     /translation="LSLVVFISILMIKDDKYSKIQYEREKFIYEDFEKYTQELKSNYY
                     ILTNKIPQIIGDLIEGETKHLLLAGNNIVELKSKNDYMENFERTWDRLNLWWRYDKVE
                     AFFEACFATFIYLIALTVLQFILIKTTNPFHLIFEFKKMFIVSILVYSILIGYGLVTY
                     VNAEYVTLKPVSDNLELGYVPSNFIEVS"
BASE COUNT          218 a           51 c           84 g          212 t
ORIGIN      
        1 ttaagtttag tggtttttat ttctattcta atgataaaag atgataaata tagtaaaatt
       61 caatatgaaa gagaaaaatt tatatatgaa gattttgaaa aatataccca agaacttaaa
      121 agtaattatt atatattaac aaataaaata ccacagatta taggagattt aatagaaggt
      181 gaaaccaaac atcttctatt agctggtaat aatattgttg aattaaagtc aaaaaatgac
      241 tacatggaaa attttgagag aacatgggat agacttaatc tttggtggag atatgataaa
      301 gttgaagctt tttttgaagc atgttttgca acatttattt atttgattgc tttgactgtt
      361 ttgcaattta ttttaattaa aaccacaaat ccattccatt taatttttga atttaaaaaa
      421 atgtttattg tatcaatttt agtttactct atattaattg gctatggatt agtaacttat
      481 gtaaatgcag aatatgtaac acttaaaccc gttagcgata atttagaatt aggttatgtg
      541 cctagtaatt ttatagaagt aagtg
//
LOCUS       DAPOLW010000256          551 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.259, whole genome shotgun sequence.
ACCESSION   DAPOLW010000256 DAPOLW010000000
VERSION     DAPOLW010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.259"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
BASE COUNT          260 a           67 c           57 g          167 t
ORIGIN      
        1 atttatttca ataaatttaa gttttatctt gttttataca atttttaata taatctaaaa
       61 ttataatttt aaatgagaaa tcaggagctt gctaatgtta cttaacacgc cttgcagggg
      121 gataatagat acaaattttg aaagcaaaag aattagcata acttcaactt taaaatttca
      181 agaaaaaaag aaaaagtaga agctaaggct gagaaagaag aagcaaataa agacaatagc
      241 aattctacaa acacaaatac caataaaaaa gataaacttt tggatatatc tgcttagtct
      301 aaaatatact atagctatat ctccttaaag aatacgcaat aaatgatttt ttgattttta
      361 ttaagctttt aaaacatcga aaaaaggaaa aattaaaaaa cacaaaaaca atatcccaaa
      421 gtccatagct tagaagaaga ccttgcgata cttaaaaaca acccatatta aatcacaaaa
      481 ataaaatata tttaaatatt tattaaaata cattttataa tttaataaaa aaatattatc
      541 aatataaaag c
//
LOCUS       DAPOLW010000257          544 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.260, whole genome shotgun sequence.
ACCESSION   DAPOLW010000257 DAPOLW010000000
VERSION     DAPOLW010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 544)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.260"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            1..244
                     /locus_tag="ROE18_001838"
                     /pseudo
     CDS             1..244
                     /locus_tag="ROE18_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344804.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="capsular biosynthesis protein"
BASE COUNT          203 a           63 c           79 g          199 t
ORIGIN      
        1 ctataatttt aattatttta tacaaaattt tgatcttata gaagaatggc tattatcaaa
       61 tgattttaat gaaaaatata aaaaagaaaa ccatccttac ccttcattat ttgatcctaa
      121 aaaactaaat gatgaaaaag aaaaaataaa ctataaaaac atatcagctg aacttgcttg
      181 ggaaatgaat ctacctttac ctgataatta tgaatttgtg tttttgttgg ttcatggtgc
      241 tggaacaact gctatgacaa gatacttaag gttatgtgac attaatgtta atagacattg
      301 gggagatccg ttatttcagt atatagattc ttatcgtatg cttgtgaact caaaggctta
      361 taatgcaatt attcttgctg gatgtttaaa taagtatagt ttcaattttg gaattaagtt
      421 ttataatttg attcaaaaga aaattcctgc aatttgtgtt atgagagatc ccatatcagt
      481 tttaagacct attgtaaatc attatggaaa tttaaaacat cctaaagata aaatttgtaa
      541 ttat
//
LOCUS       DAPOLW010000258          531 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.261, whole genome shotgun sequence.
ACCESSION   DAPOLW010000258 DAPOLW010000000
VERSION     DAPOLW010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.261"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            21..473
                     /locus_tag="ROE18_001839"
     CDS             21..473
                     /locus_tag="ROE18_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HDX3651984.1"
                     /translation="MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCSLLDLAK
                     YELDLYFTHKLRKFSIPVLIQGTDFESKVYKALMEIPYGKIATYKDIAEKINHPKAFR
                     AVGNANSKNQIPIFIPCHRVIASNGIGGYNGGLEIKRFLLENEGVNLK"
BASE COUNT          195 a           58 c           88 g          190 t
ORIGIN      
        1 agctctttga aggataaaaa atgtttaaag tttattataa aatgccttta tgttacctat
       61 ctttacatag tgatggaaaa tttttaacta gagtcgattt ttgtgataat aaaagatcag
      121 aaaaaaattg tagtttgctt gacttagcaa aatatgaact tgatttatat tttactcata
      181 agcttagaaa atttagcatt cctgttttga tacaaggtac ggattttgaa tcaaaggttt
      241 acaaggcttt aatggaaatt ccttatggca aaatagctac ttataaagat atagcagaaa
      301 aaattaatca tccaaaagct tttagagctg ttggaaatgc aaattctaaa aatcaaattc
      361 ctatttttat accttgtcat agagttattg caagcaatgg cataggagga tataatggag
      421 ggcttgaaat aaaaagattt ttgcttgaaa atgaaggagt gaatttaaaa taagcttggg
      481 gtttgatttt ctttgttttc aaattcttgc tcaaaaatat cataattttc a
//
LOCUS       DAPOLW010000259          518 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.262, whole genome shotgun sequence.
ACCESSION   DAPOLW010000259 DAPOLW010000000
VERSION     DAPOLW010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.262"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..>518
                     /locus_tag="ROE18_001840"
     CDS             <1..>518
                     /locus_tag="ROE18_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDX3651985.1"
                     /translation="LKNKTQTIKENSLIEFNIEGNNPYEIYTVYKSYKAFNNEQDLTN
                     FTYPIIDYIIFLDSDDYWELNCIEECVPRMDGVDVVWFDSIEYHDIEKSYFKHHSRLK
                     DINIKKECRINPIEWLKLLRQNKIKDFAFAWSGIIDFDYIKDKKMKFKDAIFAEDHLF
                     GILLFSQAKNIY"
BASE COUNT          209 a           48 c           80 g          181 t
ORIGIN      
        1 aactcaaaaa taaaactcaa actataaaag aaaattcttt aatagaattt aacatagaag
       61 gtaataatcc ttatgaaata tatactgtat ataaaagcta taaagctttt aataatgaac
      121 aagatttaac taactttact tatcctatta tagattatat catcttttta gattctgatg
      181 attattggga attaaactgc atagaagaat gtgtacctag aatggatggg gtagatgtgg
      241 tttggtttga tagtattgaa tatcatgata tagaaaaaag ttatttcaag catcatagtc
      301 gtttaaaaga tattaatata aagaaagaat gtagaataaa tcctatagag tggcttaagc
      361 ttctaaggca aaataaaatt aaagactttg catttgcgtg gagtggcata attgattttg
      421 attatataaa agataaaaaa atgaaattta aagacgctat ttttgctgaa gatcatttat
      481 ttggaatttt gcttttttcg caagctaaaa atatttat
//
LOCUS       DAPOLW010000260          508 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.264, whole genome shotgun sequence.
ACCESSION   DAPOLW010000260 DAPOLW010000000
VERSION     DAPOLW010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.264"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..>508)
                     /locus_tag="ROE18_001841"
     CDS             complement(<1..>508)
                     /locus_tag="ROE18_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDX3651986.1"
                     /translation="YSAYKYFQEEDIENIKNLLNQFHFSYGEINNDNALFLANSLVKH
                     VENLKMQNKLDHNFKLNFTSTFIPPNGDYQNYGIMAAIDHINALKDLVKRFPKFADLP
                     KIYGGGSYGGYLSLLIAKIAPWYVDGVIDNSGSALPPLNYILGREMEHSYGDYYEDFP
                     HNRIIFFLK"
BASE COUNT          182 a           83 c           64 g          179 t
ORIGIN      
        1 tttttagaaa aaaaataatc ctattatgtg gaaaatcttc ataataatca ccgtaactat
       61 gttccatttc tcttcctaaa atataattta aaggtggcaa agccgaaccc gaattatcaa
      121 tcacaccatc cacataccaa ggagctatct ttgctatgag taaagatagg tatcctccat
      181 aagacccccc cccataaatt tttggtaaat ctgcaaattt tggaaagcgt ttaactagat
      241 cttttaaagc attgatatga tcaatagctg ccataatgcc atagttttga taatctccat
      301 taggtgggat aaaagttgaa gtaaaattta gtttaaagtt atgatcgagt ttattttgca
      361 tttttaaatt ttctacatgt ttcactaaag aattcgctaa aaaaagcgca ttatcattat
      421 ttatttcacc ataagaaaaa tgaaactgat ttaataaatt tttaatattt tcaatatctt
      481 cctcttgaaa atatttgtat gcactata
//
LOCUS       DAPOLW010000261          492 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.266, whole genome shotgun sequence.
ACCESSION   DAPOLW010000261 DAPOLW010000000
VERSION     DAPOLW010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 492)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 492)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.266"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..212)
                     /locus_tag="ROE18_001842"
     CDS             complement(<1..212)
                     /locus_tag="ROE18_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDX3651987.1"
                     /translation="MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAG
                     SGKTTFARVVAKEFGLDFYEFDGGNF"
     gene            complement(212..>492)
                     /locus_tag="ROE18_001843"
     CDS             complement(212..>492)
                     /locus_tag="ROE18_001843"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651988.1"
                     /translation="LDLKIQNLILEKNKQNISLQGNLNINNSYQAKLQVISSDEPDEI
                     FPWTKDYGGLNQYFLKENNNFFLNLSYDSLANPQLKINGSEFSNMDLN"
BASE COUNT          174 a           69 c           62 g          187 t
ORIGIN      
        1 ttaaaatttc ctccatcaaa ttcataaaaa tctaagccaa attcttttgc tacaactcta
       61 gcaaaagttg tttttccaga acctgctgtt ccaaaaaaaa tactatgagg aagtttttgt
      121 aaagcagtaa attttttgaa aatttctata agctcatatt gtcctaaaat atcatcaaaa
      181 ttttcagggc gaaaggtcaa agctaggctc attaatttaa atccatattt gaaaattcac
      241 taccattaat ttttagttga ggattggcca agctatcata agataaattt agaaaaaagt
      301 tattattttc ttttaaaaaa tattgattta aacctccata atcctttgtc caaggaaaaa
      361 tttcatcagg ctcgtctgaa ctgataactt gtaattttgc ttgataagag ttgttaatat
      421 ttaaattgcc ttgtaaactg atattttgtt tatttttttc aaggattaaa ttttgtattt
      481 ttagatcaag at
//
LOCUS       DAPOLW010000262          461 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.269, whole genome shotgun sequence.
ACCESSION   DAPOLW010000262 DAPOLW010000000
VERSION     DAPOLW010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 461)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.269"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..455
                     /locus_tag="ROE18_001844"
     CDS             <1..455
                     /locus_tag="ROE18_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HDX3651989.1"
                     /translation="PKFIINIKDKKLKIHFLIANPYLKHLAFMAFDEVAMIKKELRSL
                     GAKTVVLNSGVPTTLSALKQNISYEKYETTRVNGKKLCHKDFLNYAIKLFHMEEKKAI
                     KEVGMMRKNYLSAGCLLFYALFDKHKLLVIDEGLREGVCLASMKNIKF"
BASE COUNT          169 a           46 c           82 g          164 t
ORIGIN      
        1 atcctaaatt tatcatcaat attaaagata aaaaacttaa aattcatttt ttaattgcaa
       61 atccctattt aaagcattta gcttttatgg cttttgatga ggtggctatg attaaaaagg
      121 aacttcgttc tttaggggct aaaacggtgg ttttaaattc cggagttcct actacactta
      181 gcgcattaaa acaaaatata agctatgaaa agtatgaaac aactagagta aatggtaaaa
      241 aactttgcca taaggatttt ttaaattatg ctattaaact ttttcatatg gaagaaaaaa
      301 aggctataaa agaagtaggt atgatgagaa aaaattattt gagtgcaggt tgtttattgt
      361 tttatgcttt gtttgataaa cataaacttc tagtcattga tgagggttta agagaggggg
      421 tttgtttagc gagtatgaaa aatataaaat tttagttttt t
//
LOCUS       DAPOLW010000263          454 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.270, whole genome shotgun sequence.
ACCESSION   DAPOLW010000263 DAPOLW010000000
VERSION     DAPOLW010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.270"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(46..>454)
                     /locus_tag="ROE18_001845"
     CDS             complement(46..>454)
                     /locus_tag="ROE18_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDX3651990.1"
                     /translation="SKDESFQKFLNEDFLKLYKNNGYLINENLQNLKNTMQDIMIYYK
                     LRYSFSKDVKDMSKNKNLDILNIDEKDGGTLLYKINNQACVGIELTRHDSRMAMKIYG
                     IENLDKECKLFIQSPSFKDLFYTKKDFKWYYLE"
BASE COUNT          154 a           60 c           44 g          196 t
ORIGIN      
        1 aagtgtggtt tttaaaaatt tttatttaaa aattaaagca tttatttatt ctaaataata
       61 ccacttaaaa tccttttttg tgtagaaaag atctttaaaa gaaggtgatt ggataaatag
      121 tttgcactct ttatccaaat tttctatccc gtatattttc atagccattc ttgagtcatg
      181 tcttgtaagt tctattccaa cacaagcttg attgttgatt ttgtaaagta aagtgccacc
      241 atctttttca tctatattta aaatatccaa attcttattt ttactcatat cttttacatc
      301 tttactaaaa gaatatcgga gtttataata tatcataata tcctgcatgg tatttttcaa
      361 attttgtaaa ttttcattaa tcaaatatcc attattttta taaagtttta aaaaatcttc
      421 attaagaaat ttttgaaaac tttcatcttt agat
//
LOCUS       DAPOLW010000264          424 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.272, whole genome shotgun sequence.
ACCESSION   DAPOLW010000264 DAPOLW010000000
VERSION     DAPOLW010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.272"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..>424)
                     /locus_tag="ROE18_001846"
     CDS             complement(<1..>424)
                     /locus_tag="ROE18_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="chemotaxis protein CheR"
                     /protein_id="HDX3651991.1"
                     /translation="ALKLNKFLEGTNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYF
                     LRELAQLKEIIYYAKSLEKRVNILSAPCSSGEEVYSLALLAAQNFIKDMYILGVDINS
                     SVIEKAKLGKYQGRTLQRLSESEKRRFFLESEDKFYTIN"
BASE COUNT          135 a           76 c           43 g          170 t
ORIGIN      
        1 attaatagta taaaatttat cttcgctttc taaaaaaaac cttctttttt cactctcgct
       61 caatcgctgt aaagttcttc cttgatattt tccaagtttt gctttttcaa tcacacttga
      121 attaatatca acgcctaaaa tatacatatc tttaataaaa ttctgtgcag ccaataatgc
      181 caaagaatat acttcttctc cacttgaaca aggggcgctt aggatattta ctctcttttc
      241 taagcttttg gcataataaa ttatttcttt caattgagcc aattctctta aaaaataagt
      301 ttcacctatg gttacaaaat ctaaagtttc ttgtttaagt tgtctattgc tttttaattt
      361 tcccaaaaat tcggaaaaat ttttagtatt agttccttca agaaatttat tcaactttaa
      421 agct
//
LOCUS       DAPOLW010000265          411 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.273, whole genome shotgun sequence.
ACCESSION   DAPOLW010000265 DAPOLW010000000
VERSION     DAPOLW010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 411)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 411)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.273"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
BASE COUNT          176 a           43 c           51 g          141 t
ORIGIN      
        1 attatgtata atcttggaaa aaatattgca cataatatag agaattttta tcctcctaga
       61 atactgaata tgtgtaaaat taaccccaac ttttctattt gtaccccaga tatgtttata
      121 tgcgataaag aagatataat tttaacagag gaaaaagatt tacaacatag agaaaaagta
      181 tattatttaa aaaatgatat aaaattacaa tttccacata ctttcattaa ttattatata
      241 tgtgcaatac atgtatggaa taaggtaaaa tatgctaaaa ctaatgatca gattagaaaa
      301 acttattcta gcatagttat acaaaatcta aaaaaaagta tagttaagaa tgcagcggct
      361 tataattatt gttttggatt ttatgaaact aattttataa ttgataagca a
//
LOCUS       DAPOLW010000266          396 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.275, whole genome shotgun sequence.
ACCESSION   DAPOLW010000266 DAPOLW010000000
VERSION     DAPOLW010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.275"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..>396)
                     /locus_tag="ROE18_001847"
     CDS             complement(<1..>396)
                     /locus_tag="ROE18_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl transferase family 2"
                     /protein_id="HDX3651992.1"
                     /translation="EEILKNNNYSLAFNKKGFKNQRSIFLAKCVYKFSKLTKKFFKKS
                     QLVKGSKTCNMSFYKSDFEAIEGFNEKFIGWGREDSEFVARFLFNDGVFKRLKFNALA
                     YHIYHEENSKNMLEINHQIYLETIKNEKTT"
BASE COUNT          133 a           61 c           35 g          167 t
ORIGIN      
        1 gttgtttttt cattttttat agtttcaaga taaatttgat gattgatttc gagcatattt
       61 ttgctatttt cttcatgata gatatgataa gccagagcat taaatttaag ccttttaaac
      121 actccatcat taaataaaaa tctagctaca aactcactat cttccctacc ccagcctata
      181 aatttttcat taaatccctc aatggcttca aaatcacttt tataaaaact catattgcaa
      241 gttttactac ctttaacaag ttgtgatttt ttaaaaaatt tcttagttag ttttgaaaat
      301 ttatatacac atttagctaa aaaaatactt ctttgatttt taaaaccttt tttattaaaa
      361 gctaaactat aattattgtt ttttaagatt tcttcg
//
LOCUS       DAPOLW010000267          391 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.276, whole genome shotgun sequence.
ACCESSION   DAPOLW010000267 DAPOLW010000000
VERSION     DAPOLW010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 391)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.276"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..>391
                     /locus_tag="ROE18_001848"
     CDS             <1..>391
                     /locus_tag="ROE18_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDX3651993.1"
                     /translation="KAMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEEL
                     DNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKATIGATQSSKIGLTRFETGGRIS
                     SSGEVQFTLKNYNGIDDFQFQKVVISTS"
BASE COUNT          150 a           64 c           66 g          111 t
ORIGIN      
        1 ataaggctat ggatgagcaa cttaaaatct tagatactat taaaactaag gcaactcaag
       61 cggctcaaga tggacaaagt ttaaaaacaa gaaccatgct tcaagcagat atcaaccgtt
      121 taatggaaga acttgacaat atcgcaaata ctacttcatt taacggtaag caacttttaa
      181 gtggaaattt tatcaatcaa gaatttcaaa tcggtgctag ttcaaatcaa actgtaaaag
      241 ctaccatagg agcaacccaa tcttctaaga taggtttaac acgctttgaa acaggaggaa
      301 gaatttcatc tagtggtgaa gtgcaattta ctcttaaaaa ttacaatggt atagatgatt
      361 ttcagtttca aaaagtggtt atttcaactt c
//
LOCUS       DAPOLW010000268          390 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.277, whole genome shotgun sequence.
ACCESSION   DAPOLW010000268 DAPOLW010000000
VERSION     DAPOLW010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.277"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..>390)
                     /locus_tag="ROE18_001849"
     CDS             complement(<1..>390)
                     /locus_tag="ROE18_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDX3651994.1"
                     /translation="LGELKNDSKIYYGIYQVYKSMEEYEKQNNFKYDFIIRVRPDYVI
                     EKNDIKIEDLHLLELNDIYDARYFCGLDGSLQIGRRNAMEIYMKTWAYAKENKENPYF
                     NTFLKNFPQTCMSPGNGFLSHYFLSQWV"
BASE COUNT          135 a           68 c           32 g          155 t
ORIGIN      
        1 acccattggc ttaaaaaata atgcgataaa aatccatttc ctggactcat acaagtttgc
       61 ggaaaatttt taagaaatgt attaaaataa ggattttctt tattttcttt agcatatgcc
      121 caagttttca tataaatttc cattgcattt cttctaccta tttgcaaact tccatctaga
      181 ccacaaaaat accttgcatc atagatatca tttaactcta ataaatgcaa gtcttcaatt
      241 tttatatcat tcttttctat aacataatca ggtctaacac gtataataaa atcatattta
      301 aaattatttt gcttttcata ttcttccata cttttataaa cttggtagat tccataatat
      361 attttagaat cattttttaa ttcccctaaa
//
LOCUS       DAPOLW010000269          385 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.279, whole genome shotgun sequence.
ACCESSION   DAPOLW010000269 DAPOLW010000000
VERSION     DAPOLW010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.279"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(6..81)
                     /locus_tag="ROE18_001850"
     tRNA            complement(6..81)
                     /locus_tag="ROE18_001850"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(46..48),aa:Lys,seq:ttt)
     gene            complement(86..162)
                     /locus_tag="ROE18_001851"
     tRNA            complement(86..162)
                     /locus_tag="ROE18_001851"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(126..128),aa:Asp,seq:gtc)
     gene            complement(214..289)
                     /locus_tag="ROE18_001852"
     tRNA            complement(214..289)
                     /locus_tag="ROE18_001852"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(254..256),aa:Val,seq:tac)
     gene            complement(296..371)
                     /locus_tag="ROE18_001853"
     tRNA            complement(296..371)
                     /locus_tag="ROE18_001853"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(336..338),aa:Arg,seq:tct)
BASE COUNT          111 a           97 c           93 g           84 t
ORIGIN      
        1 aaaaatggtg tcccgtgttg gattcgaacc aacggccccc tccttaaaag ggagatgctc
       61 taccggctga gctaacgaga caatatggcg cagcggacgg ggctcgaacc cgcgacctcc
      121 gccgtgacag ggcggcattc taaccagctg aactaccgct gcatccaaag taaagaagta
      181 gagattataa aacctattta tgattttata aaatggtggt cactataaga ctcgaactta
      241 tgacatccac cttgtaaggg tggcgctcta ccaactgagc taagcgacct atgattggcg
      301 acccctagag gatttgaacc tctgtttcca cacagagaga gtgttgtcct gggccactag
      361 acgaaagggt cataacccta acaat
//
LOCUS       DAPOLW010000270          384 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.280, whole genome shotgun sequence.
ACCESSION   DAPOLW010000270 DAPOLW010000000
VERSION     DAPOLW010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 384)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.280"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..>384)
                     /locus_tag="ROE18_001854"
     CDS             complement(<1..>384)
                     /locus_tag="ROE18_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HDX3651995.1"
                     /translation="EKIFNIQVPYAYPDENGKPTLNTVKEYADDKYGNFYILNIKIKE
                     LQNVIKKIYYLDMIDIMPENSFKTLTRLSQILHFNPPESSVLFSSKLNSSDNHVDYLF
                     FPKTFYMEYEGNRIEFEVTKYKLSSD"
BASE COUNT          141 a           54 c           45 g          144 t
ORIGIN      
        1 atctgaagat aatttatatt ttgtaacttc aaattctatt ctatttcctt catactccat
       61 ataaaatgtc tttggaaaaa acaaataatc aacatgatta tcagacgaat ttaactttga
      121 actaaacaaa acagaagact ctggcggatt aaaatgaagt atttgagaca accgagttaa
      181 agttttgaaa gaattttcag gcatgatatc aatcatatct aaataatata ttttcttaat
      241 tacattttgc aattctttaa ttttaatatt tagaatataa aaatttccat atttatcatc
      301 tgcatattct ttaacggtat tcaaggttgg cttaccattc tcatctggat atgcgtaagg
      361 gacttgaata ttaaaaattt tctc
//
LOCUS       DAPOLW010000271          334 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.285, whole genome shotgun sequence.
ACCESSION   DAPOLW010000271 DAPOLW010000000
VERSION     DAPOLW010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 334)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 334)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.285"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            3..>334
                     /locus_tag="ROE18_001855"
     CDS             3..>334
                     /locus_tag="ROE18_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HDX3651996.1"
                     /translation="MTKENLENELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVKS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFIATNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPY"
BASE COUNT          128 a           49 c           45 g          112 t
ORIGIN      
        1 tcttgactaa agagaattta gaaaatgagt taaaaactct tcctaatagc actggcgttt
       61 atcaatactt caatcaagaa ggaaagcttt tatatgtagg caaggctaaa aatcttaaaa
      121 atcgtgtcaa atcttatttt gcctttactc caaatttaca tgcaaatcca agaaattctt
      181 taagaattca aaaaatgatt gaagaaacag tgcatttgga atttattgct actaattcag
      241 aggctgatgc tttgatttta gaaaattctt ttatcaaaca actgcatcca aaatataata
      301 ttttgctaag agatgataaa acttatcctt atat
//
LOCUS       DAPOLW010000272          321 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.286, whole genome shotgun sequence.
ACCESSION   DAPOLW010000272 DAPOLW010000000
VERSION     DAPOLW010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 321)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 321)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..321
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.286"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..>321)
                     /locus_tag="ROE18_001856"
     CDS             complement(<1..>321)
                     /locus_tag="ROE18_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDX3651997.1"
                     /translation="MGFGSVNKGVMLAGYSSVSAYMSSAGSGFSSGSGYSVGSGKNYS
                     TGFANAIAISAASQLSAVYNVSAGSGFSSQSGLSQFATMKTTAFGVKDETAGVTTLKG
                     AMAV"
BASE COUNT          109 a           77 c           53 g           82 t
ORIGIN      
        1 tcactgccat agcaccctta agtgtggtaa cacctgcggt ttcatctttt actccaaaag
       61 cagttgtttt catagttgca aactgagaaa gtccgctttg actagaaaaa cctgaacctg
      121 cagaaacatt atataccgca gaaagttgcg aagcagctga aatagctata gcgtttgcaa
      181 aacctgtgga ataattttta ccgctaccta cagaataacc tgaacctgaa gaaaatccac
      241 ttcctgcgct actcatataa gcgctaacag aagaataacc agctaacata actcctttgt
      301 ttacagaacc aaatcccata g
//
LOCUS       DAPOLW010000273          298 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.287, whole genome shotgun sequence.
ACCESSION   DAPOLW010000273 DAPOLW010000000
VERSION     DAPOLW010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.287"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            complement(<1..>298)
                     /locus_tag="ROE18_001857"
     CDS             complement(<1..>298)
                     /locus_tag="ROE18_001857"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDX3651998.1"
                     /translation="KNPKDQIFNRSLDYNFSYFFDTYNRQFKITNDTKILNNGVNNIN
                     LISFFLASPEGNYHTEEIDLEALANENIEIPKEYNFNHLIPPIELYKEIIDEYCS"
BASE COUNT           99 a           30 c           45 g          124 t
ORIGIN      
        1 tagaacaata ctcatctata atttctttat ataattctat aggaggaatt aaatgattaa
       61 aattatattc ttttggtatt tctatgtttt cattagctaa agcttcaaga tctatttctt
      121 ctgtatggta attaccttca ggggaagcta ggaagaagga gatgagatta atattgttta
      181 ccccattatt taaaatttta gtatcattag tgattttaaa ttgtctattg tatgtgtcaa
      241 aaaagtatga gaagttataa tctaaacttc gattgaaaat ttgatctttt ggattttt
//
LOCUS       DAPOLW010000274          288 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.288, whole genome shotgun sequence.
ACCESSION   DAPOLW010000274 DAPOLW010000000
VERSION     DAPOLW010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 288)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 288)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..288
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.288"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
BASE COUNT          116 a           24 c           48 g          100 t
ORIGIN      
        1 gtctatcttt ttggggcgca tttattctcc cagtacctag tttttaaagg gttaaaaacc
       61 aataaaattg tgaatatttt agacaatgac ttaaataaac aaggaaaaag actatatggt
      121 actagcttta tggttgaatg tccaaaaaat ttaaaacata atgataattg tttagttatt
      181 ttaaatgctg gtatttataa tgatgagata gaaaaggata ttataagaaa cattaatagt
      241 aatgtagaga ttataaaatg ttaaatataa ataatgtgga cagtttag
//
LOCUS       DAPOLW010000275          284 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.289, whole genome shotgun sequence.
ACCESSION   DAPOLW010000275 DAPOLW010000000
VERSION     DAPOLW010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 284)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 284)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.289"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            <1..>284
                     /locus_tag="ROE18_001858"
     CDS             <1..>284
                     /locus_tag="ROE18_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDX3651999.1"
                     /translation="ANGALVAAINSVKDTTGVEASIDANGQLLLSSREGRGIKIEGSI
                     GRGAFINPNMMENYGRLSLVKNDGKDILVSGTGLSFAGFGANSFISQASV"
BASE COUNT           87 a           37 c           65 g           95 t
ORIGIN      
        1 atgctaatgg agccttagtt gctgcaatca attcggttaa agataccact ggagttgaag
       61 cttcaatcga tgctaatgga caacttttac ttagctcaag agagggaaga ggaattaaaa
      121 tcgaaggaag tattggtaga ggtgctttta tcaatccaaa tatgatggaa aattatggtc
      181 gtttatcttt agttaaaaat gatggtaaag atattttagt aagtggtaca ggtctttctt
      241 ttgcaggttt tggagcaaac agttttatct ctcaggcttc tgtt
//
LOCUS       DAPOLW010000276          272 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.denovo.291, whole genome shotgun sequence.
ACCESSION   DAPOLW010000276 DAPOLW010000000
VERSION     DAPOLW010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..272
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.denovo.291"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            90..>272
                     /locus_tag="ROE18_001859"
     CDS             90..>272
                     /locus_tag="ROE18_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDX3652000.1"
                     /translation="MHQPTLRVLNILELLAKEKLTLSAIAKKLNIPAGTLWPILQTLQ
                     EKKYIKCDLKNKSYYLD"
BASE COUNT          124 a           32 c           30 g           86 t
ORIGIN      
        1 attaataaat aataaaaatt atgattttat gttactaaaa gtaaaaaata tgctaaaatt
       61 tataaaaata aaacaaggat aaagacaata tgcatcagcc cactcttaga gtgttaaata
      121 ttctagaatt acttgcaaaa gaaaagctta ccttaagtgc tatagctaaa aaattaaaca
      181 ttcctgctgg aactctttgg cctattttac aaactcttca agaaaaaaaa tatatcaaat
      241 gtgatttaaa aaataaaagt tattatttgg at
//
LOCUS       DAPOLW010000277          699 bp    DNA     linear   BCT 20-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni strain 18Q1101H1
            SAMN13413841-rid19058543.guided.245, whole genome shotgun sequence.
ACCESSION   DAPOLW010000277 DAPOLW010000000
VERSION     DAPOLW010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN13413841
            Sequence Read Archive: SRR25377013
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001755938.3
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001755938.3
            Genome Coverage       :: 108x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/11/2023 12:43:43
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,770
            CDSs (with protein)               :: 1,770
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 34 of 47
            Pseudo Genes (incomplete)         :: 10 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 10 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN13413841-rid19058543.guided.245"
                     /strain="18Q1101H1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Australia: QLD"
                     /lat_lon="23 S 143 E"
                     /collection_date="2018"
                     /collected_by="Queensland Health"
     gene            17..>699
                     /gene="blaOXA"
                     /locus_tag="ROE18_001860"
     CDS             17..>699
                     /gene="blaOXA"
                     /locus_tag="ROE18_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class D beta-lactamase"
                     /protein_id="HDX3652001.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMICLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNL"
BASE COUNT          255 a           79 c          119 g          246 t
ORIGIN      
        1 aatagaaaga tattttatga aaaaaataac tttattttta cttttcttaa atttagtgtt
       61 tgggcaagat aagatattaa ataattggtt taaagagtat aatacaagcg gcacttttgt
      121 tttttatgat ggaaaaactt gggcgagtaa cgacttttca agggctatgg agactttctc
      181 tcccgcttcc acttttaaaa tttttaatgc tctaattgca cttgatagtg gtgtgataaa
      241 aactaaaaaa gaaatttttt atcactatag aggtgaaaaa gtatttttat cttcttgggc
      301 gcaagatatg aatttaagtt cagctataaa atattctaat gttcttgctt ttaaagaagt
      361 ggcaagaaga attggtatca aaactatgca agaatattta aacaagcttc attatggtaa
      421 tgctaaaatt tccaagatcg atactttttg gcttgacaac tcactaaaaa taagcgctaa
      481 agaacaagca attttgcttt ttagactttc acaaaatagc ttaccttttt ctcaagaagc
      541 aatgaatagt gttaaggaaa tgatttgttt aaaaaatatg gaaaatttag agctttttgg
      601 aaaaacaggt tttaatgatg agcaaaaaat tgcttggatt gtaggttttg tgtatttaaa
      661 agatgaaaat aaatataagg ctttcgcgct aaatttaga
//
